HHsearch alignment for GI: 254780334 and conserved domain: cd03262
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.99 E-value=0.00016 Score=52.56 Aligned_cols=136 Identities=22% Similarity=0.345 Sum_probs=74.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHCCCCCCCHHEECCCC-HHHH---
Q ss_conf 8578708999549875188999999999850398199998646---30478888752015775100003478-8999---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE---AIGQIRLRAQRLNTINSSVYIAIETN-VEDI--- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE---s~~Qi~~Ra~Rl~~~~~~i~~~~e~~-l~~i--- 158 (479)
T Consensus 22 ~i~~Ge~~~ivGpSGsGKSTLL~~i~g-L~~p~~G~i~i~g~~i~~~~~~~~~~rr~iG~VFQ~~~L~p~ltv~eNV~~~ 100 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINL-LEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA 100 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEECCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf 988998999999998449999999981-9999864999999999998156999867827996798758999199999999
Q ss_pred ---------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ---------------------------------------------99997316982899721687665420445563679
Q gi|254780334|r 159 ---------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 159 ---------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
T Consensus 101 l~~~~~~~~~e~~~~a~~~L~~vgL~~~~~~~P~~LSGGqqQRVAIARAL-a~~P~ilL~DEPt----s~LD~~-----~ 170 (213)
T cd03262 101 PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-AMNPKVMLFDEPT----SALDPE-----L 170 (213)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHH-CCCCCEEEECCCC----CCCCHH-----H
T ss_conf 99976999999999999999868997887499444692999999999996-3799999970888----877989-----9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 171 ~~~i~~ll~~l~~~-g~T~i~VTH--------D~~~a~~~aDri~~l~ 209 (213)
T cd03262 171 VGEVLDVMKDLAEE-GMTMVVVTH--------EMGFAREVADRVIFMD 209 (213)
T ss_pred HHHHHHHHHHHHHC-CCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 99999999999862-999999998--------9999999689899997