HHsearch alignment for GI: 254780334 and conserved domain: cd03265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00069 Score=47.89 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=80.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC--------------
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003--------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI-------------- 151 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~-------------- 151 (479)
T Consensus 22 ~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~-i~i~G~~~~~~~~~~r~~ig~~pq~~~l~~~lTv~e~l~~~~~l 100 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR-ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARL 100 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 98898399999999871999999997697889628-99999998839899982838990787679889999999999998
Q ss_pred -----------------CCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -----------------4788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 152 -----------------ETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 152 -----------------e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
T Consensus 101 ~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ia~A-l~~~P~lliLDEPt----~gLD-----p~~~~~i 170 (220)
T cd03265 101 YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARS-LVHRPEVLFLDEPT----IGLD-----PQTRAHV 170 (220)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHH-HHCCCCEEEECCCC----CCCC-----HHHHHHH
T ss_conf 199999999999999997799679737043479999999999999-85699989980886----6889-----9999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 171 ~~~i~~l~~~~g~tiilssH~l~--------eve~l~dri~il~ 206 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYME--------EAEQLCDRVAIID 206 (220)
T ss_pred HHHHHHHHHHCCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf 99999999838979999888889--------9998699999997