HHsearch alignment for GI: 254780334 and conserved domain: cd03265

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81  E-value=0.00069  Score=47.89  Aligned_cols=137  Identities=17%  Similarity=0.240  Sum_probs=80.0

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC--------------
Q ss_conf             857870899954987518899999999985039819999864630478888752015775100003--------------
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI--------------  151 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~--------------  151 (479)
T Consensus        22 ~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~-i~i~G~~~~~~~~~~r~~ig~~pq~~~l~~~lTv~e~l~~~~~l  100 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR-ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARL  100 (220)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             98898399999999871999999997697889628-99999998839899982838990787679889999999999998


Q ss_pred             -----------------CCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             -----------------4788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r  152 -----------------ETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS  197 (479)
Q Consensus       152 -----------------e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~  197 (479)
T Consensus       101 ~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ia~A-l~~~P~lliLDEPt----~gLD-----p~~~~~i  170 (220)
T cd03265         101 YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARS-LVHRPEVLFLDEPT----IGLD-----PQTRAHV  170 (220)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHH-HHCCCCEEEECCCC----CCCC-----HHHHHHH
T ss_conf             199999999999999997799679737043479999999999999-85699989980886----6889-----9999999


Q ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             99999975307978999863036654331145787753027851
Q gi|254780334|r  198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       171 ~~~i~~l~~~~g~tiilssH~l~--------eve~l~dri~il~  206 (220)
T cd03265         171 WEYIEKLKEEFGMTILLTTHYME--------EAEQLCDRVAIID  206 (220)
T ss_pred             HHHHHHHHHHCCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf             99999999838979999888889--------9998699999997