HHsearch alignment for GI: 254780334 and conserved domain: cd03267

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.54  E-value=0.0029  Score=43.35  Aligned_cols=137  Identities=20%  Similarity=0.323  Sum_probs=76.9

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC--CCC-H----------HEE--
Q ss_conf             8578708999549875188999999999850398199998646304788887520157--751-0----------000--
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI--NSS-V----------YIA--  150 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~--~~~-i----------~~~--  150 (479)
T Consensus        43 ~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~-I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~~~ltv~e~l~~~~~  121 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE-VRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA  121 (236)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECCCCHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             88489599999999830999999996494887159-99999985104098884379995775424679939999999999


Q ss_pred             -----------------CCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             -----------------34788999-----------------99997316982899721687665420445563679999
Q gi|254780334|r  151 -----------------IETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT  196 (479)
Q Consensus       151 -----------------~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre  196 (479)
T Consensus       122 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~rqrv~ia~a-L~~~P~lllLDEPt----~gLD-----~~~~~~  191 (236)
T cd03267         122 IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAA-LLHEPEILFLDEPT----IGLD-----VVAQEN  191 (236)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HHHHHH
T ss_conf             8573899999999999997486877549345699999999999999-96799999997987----6889-----999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             999999975307978999863036654331145787753027851
Q gi|254780334|r  197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       192 i~~~l~~l~~~~g~till~tH~l~--------ev~~~~Drv~vl~  228 (236)
T cd03267         192 IRNFLKEYNRERGTTVLLTSHYMK--------DIEALARRVLVID  228 (236)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf             999999999738989999888789--------9999799999998