HHsearch alignment for GI: 254780334 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.54 E-value=0.0029 Score=43.35 Aligned_cols=137 Identities=20% Similarity=0.323 Sum_probs=76.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC--CCC-H----------HEE--
Q ss_conf 8578708999549875188999999999850398199998646304788887520157--751-0----------000--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI--NSS-V----------YIA-- 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~--~~~-i----------~~~-- 150 (479)
T Consensus 43 ~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~-I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~~~ltv~e~l~~~~~ 121 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE-VRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA 121 (236)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECCCCHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 88489599999999830999999996494887159-99999985104098884379995775424679939999999999
Q ss_pred -----------------CCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf -----------------34788999-----------------99997316982899721687665420445563679999
Q gi|254780334|r 151 -----------------IETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT 196 (479)
Q Consensus 151 -----------------~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre 196 (479)
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~rqrv~ia~a-L~~~P~lllLDEPt----~gLD-----~~~~~~ 191 (236)
T cd03267 122 IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAA-LLHEPEILFLDEPT----IGLD-----VVAQEN 191 (236)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HHHHHH
T ss_conf 8573899999999999997486877549345699999999999999-96799999997987----6889-----999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 192 i~~~l~~l~~~~g~till~tH~l~--------ev~~~~Drv~vl~ 228 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMK--------DIEALARRVLVID 228 (236)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf 999999999738989999888789--------9999799999998