HHsearch alignment for GI: 254780334 and conserved domain: cd03269
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.0038 Score=42.51 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=71.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH-----------------------------
Q ss_conf 857870899954987518899999999985039819999864630478888-----------------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLR----------------------------- 136 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~R----------------------------- 136 (479)
T Consensus 22 ~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~-i~i~G~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~l~g~ 100 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL 100 (210)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 88799599999899984999999996002668998-99999868844360199964766679999999999999997499
Q ss_pred ------------HHHCCCCCCCHHEECCCCHH--H--HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ------------75201577510000347889--9--9999973169828997216876654204455636799999999
Q gi|254780334|r 137 ------------AQRLNTINSSVYIAIETNVE--D--IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 137 ------------a~Rl~~~~~~i~~~~e~~l~--~--il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~ 200 (479)
T Consensus 101 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~la~al-~~~p~lllLDEPt----~gLD--p~~---~~~i~~~ 170 (210)
T cd03269 101 KKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV-IHDPELLILDEPF----SGLD--PVN---VELLKDV 170 (210)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCHHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCC--HHH---HHHHHHH
T ss_conf 9999999999999986997054880577899899999999999-5799899992886----6799--999---9999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99975307978999863036654331145787753027851
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 171 i~~~-~~~g~til~ssH~l~e--------~~~~~d~i~vl~ 202 (210)
T cd03269 171 IREL-ARAGKTVILSTHQMEL--------VEELCDRVLLLN 202 (210)
T ss_pred HHHH-HHCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf 9999-9689899998884899--------999699999998