HHsearch alignment for GI: 254780334 and conserved domain: cd03269

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48  E-value=0.0038  Score=42.51  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=71.4

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH-----------------------------
Q ss_conf             857870899954987518899999999985039819999864630478888-----------------------------
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLR-----------------------------  136 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~R-----------------------------  136 (479)
T Consensus        22 ~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~-i~i~G~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~l~g~  100 (210)
T cd03269          22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL  100 (210)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             88799599999899984999999996002668998-99999868844360199964766679999999999999997499


Q ss_pred             ------------HHHCCCCCCCHHEECCCCHH--H--HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             ------------75201577510000347889--9--9999973169828997216876654204455636799999999
Q gi|254780334|r  137 ------------AQRLNTINSSVYIAIETNVE--D--IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA  200 (479)
Q Consensus       137 ------------a~Rl~~~~~~i~~~~e~~l~--~--il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~  200 (479)
T Consensus       101 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~la~al-~~~p~lllLDEPt----~gLD--p~~---~~~i~~~  170 (210)
T cd03269         101 KKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV-IHDPELLILDEPF----SGLD--PVN---VELLKDV  170 (210)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHCCHHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCC--HHH---HHHHHHH
T ss_conf             9999999999999986997054880577899899999999999-5799899992886----6799--999---9999999


Q ss_pred             HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             99975307978999863036654331145787753027851
Q gi|254780334|r  201 MIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       201 L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       171 i~~~-~~~g~til~ssH~l~e--------~~~~~d~i~vl~  202 (210)
T cd03269         171 IREL-ARAGKTVILSTHQMEL--------VEELCDRVLLLN  202 (210)
T ss_pred             HHHH-HHCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf             9999-9689899998884899--------999699999998