HHsearch alignment for GI: 254780334 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.0011 Score=46.49 Aligned_cols=138 Identities=18% Similarity=0.224 Sum_probs=73.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH---------------------H-HHHH--------
Q ss_conf 857870899954987518899999999985039819999864630---------------------4-7888--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI---------------------G-QIRL-------- 135 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~---------------------~-Qi~~-------- 135 (479)
T Consensus 26 ~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~-I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~~~l~~~~~~ 104 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE-VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP 104 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 98799899999999957999999997599988738-99999967888988799924885377887999998899865999
Q ss_pred ------H----HHHCCCCCCCHHEECCCCHHH----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ------8----752015775100003478899----99999731698289972168766542044556367999999999
Q gi|254780334|r 136 ------R----AQRLNTINSSVYIAIETNVED----IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 136 ------R----a~Rl~~~~~~i~~~~e~~l~~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L 201 (479)
T Consensus 105 ~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL-~~~P~llllDEPt----s~LD~-----~~~~~i~~~l 174 (220)
T cd03293 105 KAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL-AVDPDVLLLDEPF----SALDA-----LTREQLQEEL 174 (220)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCCH-----HHHHHHHHHH
T ss_conf 899999999999987895476189312999999999999998-6699999980887----65699-----9999999999
Q ss_pred HHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 99753079789998630366543311457877530278515
Q gi|254780334|r 202 IQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 202 ~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
T Consensus 175 ~~l~~~~g~tii~vTHd--------l~~a~~laDri~vm~~ 207 (220)
T cd03293 175 LDIWRETGKTVLLVTHD--------IDEAVFLADRVVVLSA 207 (220)
T ss_pred HHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEEC
T ss_conf 99998519999998888--------9999996999999858