HHsearch alignment for GI: 254780334 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.0012 Score=46.11 Aligned_cols=137 Identities=16% Similarity=0.300 Sum_probs=74.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECCCC-HHHH-
Q ss_conf 8578708999549875188999999999850398199998646----30478-888752015775100003478-8999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIETN-VEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~~-l~~i- 158 (479)
T Consensus 46 ~i~~GE~~~ivG~SGsGKSTLLr~i~GL~-~p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~~aL~P~ltV~eNV~ 124 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA 124 (269)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 88899999999899848999999997599-99975999999999999989998852564699961575476787999986
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
T Consensus 125 ~~L~~~~~~~~e~~~rv~e~L~~vgL~~~~~~~P~qLSGGq~QRVaIARAL-a~~P~iLLlDEPts----aLD~-----~ 194 (269)
T cd03294 125 FGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL-AVDPDILLMDEAFS----ALDP-----L 194 (269)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHCHHHHHHHHHHHHH-HCCCCEEEECCCCC----CCCH-----H
T ss_conf 888852899789999999999867986777569678494888899999998-63998999758754----2599-----9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 195 ~~~~i~~~l~~l~~~~~~T~i~VTHD--------~~eA~~laDrI~vm~ 235 (269)
T cd03294 195 IRREMQDELLRLQAELQKTIVFITHD--------LDEALRLGDRIAIMK 235 (269)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 99999999999999749999999998--------999999799899998