HHsearch alignment for GI: 254780334 and conserved domain: cd03298
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.0012 Score=46.17 Aligned_cols=136 Identities=14% Similarity=0.277 Sum_probs=72.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC--------------
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003--------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI-------------- 151 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~-------------- 151 (479)
T Consensus 20 ~i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~sG~-I~i~G~di~-~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~ 97 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR-VLINGVDVT-AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP 97 (211)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECC-CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 98899899999999955999999997699988529-999999999-9998898679995388668999499998758864
Q ss_pred -----------------CCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -----------------4788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 152 -----------------ETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 152 -----------------e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
T Consensus 98 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiARAL-~~~P~ilLlDEPt----s~LD~-----~~~~~l 167 (211)
T cd03298 98 GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVL-VRDKPVLLLDEPF----AALDP-----ALRAEM 167 (211)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCCH-----HHHHHH
T ss_conf 6888299999999999876998787289455898999999999998-6599999971887----65598-----999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 168 ~~~l~~l~~~~~~Tvi~vTH--------d~~ea~~~adriivl~ 203 (211)
T cd03298 168 LDLVLDLHAETKMTVLMVTH--------QPEDAKRLAQRVVFLD 203 (211)
T ss_pred HHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 99999999974998999988--------9999999699999998