HHsearch alignment for GI: 254780334 and conserved domain: cd03298

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54  E-value=0.0012  Score=46.17  Aligned_cols=136  Identities=14%  Similarity=0.277  Sum_probs=72.6

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC--------------
Q ss_conf             857870899954987518899999999985039819999864630478888752015775100003--------------
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI--------------  151 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~--------------  151 (479)
T Consensus        20 ~i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~sG~-I~i~G~di~-~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~   97 (211)
T cd03298          20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR-VLINGVDVT-AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP   97 (211)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECC-CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             98899899999999955999999997699988529-999999999-9998898679995388668999499998758864


Q ss_pred             -----------------CCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             -----------------4788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r  152 -----------------ETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS  197 (479)
Q Consensus       152 -----------------e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~  197 (479)
T Consensus        98 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiARAL-~~~P~ilLlDEPt----s~LD~-----~~~~~l  167 (211)
T cd03298          98 GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVL-VRDKPVLLLDEPF----AALDP-----ALRAEM  167 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCCH-----HHHHHH
T ss_conf             6888299999999999876998787289455898999999999998-6599999971887----65598-----999999


Q ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             99999975307978999863036654331145787753027851
Q gi|254780334|r  198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       168 ~~~l~~l~~~~~~Tvi~vTH--------d~~ea~~~adriivl~  203 (211)
T cd03298         168 LDLVLDLHAETKMTVLMVTH--------QPEDAKRLAQRVVFLD  203 (211)
T ss_pred             HHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf             99999999974998999988--------9999999699999998