HHsearch alignment for GI: 254780334 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.45 E-value=0.0023 Score=44.04 Aligned_cols=135 Identities=15% Similarity=0.262 Sum_probs=70.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------ 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------ 153 (479)
T Consensus 22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~-~p~~G~I~~~g~~i~-~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~ 99 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIYIGGRDVT-DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECC-CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 98699899999999880999999997699-998639999999999-9997678878994587646547099999989998
Q ss_pred -------------------CHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH-H
Q ss_conf -------------------8899-----------------99999731698289972168766542044556367999-9
Q gi|254780334|r 154 -------------------NVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR-T 196 (479)
Q Consensus 154 -------------------~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr-e 196 (479)
T Consensus 100 ~~~~~~e~~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl-~~~P~lLLlDEP~----saLD------~~~r~~ 168 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAI-VREPKVFLMDEPL----SNLD------AKLRVQ 168 (213)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC------HHHHHH
T ss_conf 5999899999999999875992465099556999999999999998-7599989983887----6429------899999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 169 i~~~l~~~~~~~~~T~i~vTHd~~--------ea~~l~dri~vm~ 205 (213)
T cd03301 169 MRAELKRLQQRLGTTTIYVTHDQV--------EAMTMADRIAVMN 205 (213)
T ss_pred HHHHHHHHHHHHCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf 999999999974998999999989--------9999699899998