HHsearch alignment for GI: 254780334 and conserved domain: cd03301

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.45  E-value=0.0023  Score=44.04  Aligned_cols=135  Identities=15%  Similarity=0.262  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------
Q ss_conf             85787089995498751889999999998503981999986463047888875201577510000347------------
Q gi|254780334|r   86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------  153 (479)
Q Consensus        86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------  153 (479)
T Consensus        22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~-~p~~G~I~~~g~~i~-~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~   99 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIYIGGRDVT-DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL   99 (213)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECC-CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             98699899999999880999999997699-998639999999999-9997678878994587646547099999989998


Q ss_pred             -------------------CHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH-H
Q ss_conf             -------------------8899-----------------99999731698289972168766542044556367999-9
Q gi|254780334|r  154 -------------------NVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR-T  196 (479)
Q Consensus       154 -------------------~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr-e  196 (479)
T Consensus       100 ~~~~~~e~~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl-~~~P~lLLlDEP~----saLD------~~~r~~  168 (213)
T cd03301         100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAI-VREPKVFLMDEPL----SNLD------AKLRVQ  168 (213)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC------HHHHHH
T ss_conf             5999899999999999875992465099556999999999999998-7599989983887----6429------899999


Q ss_pred             HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             999999975307978999863036654331145787753027851
Q gi|254780334|r  197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE  241 (479)
Q Consensus       197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e  241 (479)
T Consensus       169 i~~~l~~~~~~~~~T~i~vTHd~~--------ea~~l~dri~vm~  205 (213)
T cd03301         169 MRAELKRLQQRLGTTTIYVTHDQV--------EAMTMADRIAVMN  205 (213)
T ss_pred             HHHHHHHHHHHHCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf             999999999974998999999989--------9999699899998