HHsearch alignment for GI: 254780334 and conserved domain: cd03369
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.84 E-value=0.00037 Score=49.85 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=70.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHCCCCCCCHHE-----------ECCC
Q ss_conf 8578708999549875188999999999850398199998646304-788887520157751000-----------0347
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRAQRLNTINSSVYI-----------AIET 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra~Rl~~~~~~i~~-----------~~e~ 153 (479)
T Consensus 30 ~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~idg~di~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~ 108 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY 108 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC-EEEECCEECCCCCHHHHHHHCEEEECCCEECCCCHHHHCCCCCCC
T ss_conf 9869999999999998799999999987288887-899999995407999999515377035633275499873803335
Q ss_pred CHHHH----------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 88999----------------------99997316982899721687665420445563679999999999975307978
Q gi|254780334|r 154 NVEDI----------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVA 211 (479)
Q Consensus 154 ~l~~i----------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~ 211 (479)
T Consensus 109 ~~~~i~~~l~~~~~g~~LSgGqkQrl~iARal-~~~p~ililDEpt----s~LD~--~~~---~~i~~~i~~~~--~~~T 176 (207)
T cd03369 109 SDEEIYGALRVSEGGLNLSQGQRQLLCLARAL-LKRPRVLVLDEAT----ASIDY--ATD---ALIQKTIREEF--TNST 176 (207)
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCCH--HHH---HHHHHHHHHHC--CCCE
T ss_conf 89999999860478888698999999999999-7089999981634----44898--999---99999999975--9999
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999863036654331145787753027851
Q gi|254780334|r 212 MVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 212 vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
T Consensus 177 vi~itH~--------l~~~~~-~D~Iivl~ 197 (207)
T cd03369 177 ILTIAHR--------LRTIID-YDKILVMD 197 (207)
T ss_pred EEEEECC--------HHHHHH-CCEEEEEE
T ss_conf 9999079--------999985-99999998