Query gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 479
No_of_seqs 297 out of 2240
Neff 5.8
Searched_HMMs 39220
Date Sun May 29 15:24:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780334.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00416 sms DNA repair prote 100.0 0 0 1235.9 24.4 450 1-454 1-481 (481)
2 PRK11823 DNA repair protein Ra 100.0 0 0 1184.5 41.0 453 1-459 1-453 (454)
3 COG1066 Sms Predicted ATP-depe 100.0 0 0 1159.3 40.4 452 1-459 1-455 (456)
4 cd01121 Sms Sms (bacterial rad 100.0 0 0 1019.0 31.5 372 8-384 1-372 (372)
5 cd01394 radB RadB. The archaea 100.0 0 0 363.5 21.4 203 72-278 1-218 (218)
6 PRK09361 radB DNA repair and r 100.0 2.8E-43 0 335.3 18.2 207 69-281 2-224 (224)
7 cd01123 Rad51_DMC1_radA Rad51_ 100.0 1E-31 2.6E-36 250.9 20.8 202 72-278 1-235 (235)
8 TIGR00763 lon ATP-dependent pr 100.0 1.3E-32 3.3E-37 257.5 9.4 391 62-458 409-941 (941)
9 PRK10787 DNA-binding ATP-depen 100.0 1.3E-30 3.3E-35 242.9 14.3 375 71-461 329-774 (784)
10 pfam06745 KaiC KaiC. This fami 100.0 9.9E-30 2.5E-34 236.4 18.6 202 72-281 1-228 (231)
11 PRK04328 hypothetical protein; 100.0 1.6E-29 4.1E-34 234.9 17.9 205 69-283 3-238 (250)
12 PRK09302 circadian clock prote 100.0 3.3E-29 8.4E-34 232.6 19.4 207 68-281 2-233 (501)
13 PRK09302 circadian clock prote 100.0 1.2E-28 3E-33 228.6 20.4 206 67-284 243-468 (501)
14 COG0466 Lon ATP-dependent Lon 100.0 9.8E-30 2.5E-34 236.5 10.7 381 69-460 328-775 (782)
15 TIGR02902 spore_lonB ATP-depen 100.0 5.3E-29 1.4E-33 231.1 12.7 372 54-458 57-532 (532)
16 TIGR02903 spore_lon_C ATP-depe 100.0 3.5E-28 8.8E-33 225.2 16.2 188 270-457 417-615 (616)
17 PRK06067 flagellar accessory p 99.9 3.1E-25 7.8E-30 203.7 17.6 206 65-281 7-235 (241)
18 cd01120 RecA-like_NTPases RecA 99.9 2.1E-25 5.3E-30 204.9 15.5 150 92-241 1-164 (165)
19 pfam08423 Rad51 Rad51. Rad51 i 99.9 3.6E-24 9.2E-29 195.9 19.3 210 66-281 19-261 (261)
20 cd00984 DnaB_C DnaB helicase C 99.9 4.5E-24 1.2E-28 195.2 19.0 190 77-269 1-238 (242)
21 cd01122 GP4d_helicase GP4d_hel 99.9 1.9E-23 4.9E-28 190.6 20.7 204 68-273 9-262 (271)
22 TIGR03600 phage_DnaB phage rep 99.9 8.1E-24 2.1E-28 193.3 17.3 198 68-269 173-419 (421)
23 cd01393 recA_like RecA is a b 99.9 2.5E-23 6.3E-28 189.8 18.3 193 72-267 1-224 (226)
24 PRK04301 radA DNA repair and r 99.9 7.6E-23 2E-27 186.2 19.0 207 67-279 80-317 (318)
25 PRK07004 replicative DNA helic 99.9 8.9E-23 2.3E-27 185.7 17.5 200 68-270 192-440 (460)
26 PRK06749 replicative DNA helic 99.9 2.3E-22 5.9E-27 182.7 19.6 202 67-270 164-416 (428)
27 PRK08840 replicative DNA helic 99.9 7.5E-23 1.9E-27 186.3 16.9 199 69-270 197-445 (464)
28 PRK09165 replicative DNA helic 99.9 7.1E-23 1.8E-27 186.5 16.6 202 68-270 184-464 (484)
29 PRK05595 replicative DNA helic 99.9 1.9E-22 4.8E-27 183.4 18.5 200 68-270 180-427 (444)
30 PRK08082 consensus 99.9 1.1E-22 2.8E-27 185.0 17.3 200 68-269 182-429 (453)
31 PRK08760 replicative DNA helic 99.9 1.4E-22 3.7E-27 184.2 17.6 200 68-270 208-456 (476)
32 PRK05636 replicative DNA helic 99.9 1.4E-22 3.5E-27 184.3 17.2 201 69-272 247-495 (507)
33 PRK08006 replicative DNA helic 99.9 1.6E-22 4.1E-27 183.9 17.4 199 69-270 204-452 (471)
34 PRK08694 consensus 99.9 2.7E-22 6.9E-27 182.2 17.5 199 68-270 197-446 (468)
35 PRK05748 replicative DNA helic 99.9 3.2E-22 8.3E-27 181.6 17.8 201 68-270 182-431 (448)
36 PRK07263 consensus 99.9 3.9E-22 1E-26 181.0 18.2 200 67-270 181-436 (453)
37 PRK06321 replicative DNA helic 99.9 3E-22 7.6E-27 181.9 17.3 201 69-270 206-454 (472)
38 PRK06904 replicative DNA helic 99.9 5.4E-22 1.4E-26 180.0 18.3 214 69-285 201-467 (472)
39 KOG2004 consensus 99.9 1.5E-22 3.9E-27 184.0 15.1 175 287-462 708-901 (906)
40 COG0468 RecA RecA/RadA recombi 99.9 2.2E-21 5.6E-26 175.6 19.4 216 64-282 34-269 (279)
41 PRK08506 replicative DNA helic 99.9 5.9E-22 1.5E-26 179.7 16.4 204 69-275 173-446 (473)
42 pfam05362 Lon_C Lon protease ( 99.9 1.9E-22 4.8E-27 183.3 13.7 181 275-458 5-203 (205)
43 PRK09862 putative ATP-dependen 99.9 7.1E-22 1.8E-26 179.1 16.1 164 297-465 4-175 (506)
44 PTZ00035 Rad51; Provisional 99.9 2.4E-21 6.2E-26 175.3 18.6 211 66-282 106-349 (350)
45 COG0467 RAD55 RecA-superfamily 99.9 2.7E-21 6.9E-26 174.9 18.0 206 69-282 2-235 (260)
46 TIGR02237 recomb_radB DNA repa 99.9 3E-21 7.6E-26 174.6 17.4 197 79-278 1-223 (223)
47 cd00983 recA RecA is a bacter 99.9 8E-21 2E-25 171.5 19.1 231 55-288 19-275 (325)
48 pfam00154 RecA recA bacterial 99.9 1.4E-20 3.5E-25 169.8 19.6 231 55-288 16-272 (322)
49 PRK09354 recA recombinase A; P 99.9 1.6E-20 4.1E-25 169.2 19.6 225 54-280 23-272 (350)
50 cd01124 KaiC KaiC is a circadi 99.9 3.4E-21 8.6E-26 174.2 13.9 166 92-266 1-186 (187)
51 pfam03796 DnaB_C DnaB-like hel 99.9 4.3E-21 1.1E-25 173.4 13.5 150 72-222 2-184 (186)
52 PRK08533 flagellar accessory p 99.9 6E-20 1.5E-24 165.1 17.5 198 68-273 2-217 (230)
53 TIGR00368 TIGR00368 Mg chelata 99.8 6.3E-21 1.6E-25 172.2 9.2 158 306-470 8-178 (505)
54 PRK07773 replicative DNA helic 99.8 1.1E-19 2.7E-24 163.3 14.8 266 67-347 181-504 (868)
55 PRK13765 ATP-dependent proteas 99.8 8E-19 2E-23 156.9 14.2 165 295-459 427-603 (637)
56 COG0305 DnaB Replicative DNA h 99.8 2.4E-18 6.1E-23 153.4 15.2 198 69-269 176-421 (435)
57 TIGR02236 recomb_radA DNA repa 99.8 7.5E-18 1.9E-22 149.8 15.7 209 65-279 71-333 (333)
58 PRK09519 recA recombinase A; R 99.8 1.1E-17 2.7E-22 148.7 14.9 172 54-227 23-206 (790)
59 COG1067 LonB Predicted ATP-dep 99.8 1.7E-17 4.4E-22 147.2 12.0 125 338-462 475-623 (647)
60 TIGR02012 tigrfam_recA protein 99.7 7.9E-17 2E-21 142.3 13.7 229 54-285 18-273 (322)
61 PRK05973 replicative DNA helic 99.7 1.5E-16 3.9E-21 140.2 13.3 135 83-223 57-197 (237)
62 KOG1434 consensus 99.7 8.5E-17 2.2E-21 142.1 11.5 210 66-281 91-334 (335)
63 COG0606 Predicted ATPase with 99.7 2E-17 5.1E-22 146.7 7.7 151 309-468 2-165 (490)
64 KOG1564 consensus 99.6 1.4E-14 3.5E-19 126.0 10.7 152 70-221 82-265 (351)
65 TIGR02238 recomb_DMC1 meiotic 99.5 2.4E-14 6.1E-19 124.2 8.3 207 66-279 72-313 (314)
66 COG2874 FlaH Predicted ATPases 99.5 4E-12 1E-16 108.0 16.0 193 70-273 7-222 (235)
67 TIGR02655 circ_KaiC circadian 99.5 3.1E-12 7.8E-17 108.8 14.4 268 70-351 1-306 (484)
68 cd01125 repA Hexameric Replica 99.5 4.6E-12 1.2E-16 107.6 14.4 181 90-276 1-235 (239)
69 KOG1433 consensus 99.3 1.4E-11 3.6E-16 104.0 10.9 207 65-277 86-319 (326)
70 TIGR00665 DnaB replicative DNA 99.3 1.9E-11 4.7E-16 103.1 11.1 204 66-270 192-457 (465)
71 TIGR02655 circ_KaiC circadian 99.3 2.5E-12 6.3E-17 109.5 5.0 200 65-278 238-460 (484)
72 KOG2373 consensus 99.3 3.3E-11 8.5E-16 101.3 9.2 201 74-278 258-492 (514)
73 COG3598 RepA RecA-family ATPas 99.2 2.6E-10 6.8E-15 94.7 11.5 145 74-222 68-245 (402)
74 TIGR02239 recomb_RAD51 DNA rep 99.2 5E-11 1.3E-15 100.0 7.2 210 65-280 71-315 (317)
75 TIGR00764 lon_rel ATP-dependen 99.2 1.7E-10 4.4E-15 96.0 9.3 172 292-463 459-652 (662)
76 COG1750 Archaeal serine protea 99.0 9.4E-09 2.4E-13 83.4 13.0 155 306-463 44-213 (579)
77 pfam07088 GvpD GvpD gas vesicl 98.9 1.7E-08 4.4E-13 81.5 11.2 161 88-260 8-192 (484)
78 PRK12377 putative replication 98.7 1E-06 2.6E-11 68.5 12.8 150 83-258 93-248 (248)
79 smart00382 AAA ATPases associa 98.7 2.7E-07 6.8E-12 72.8 9.4 144 89-240 1-144 (148)
80 cd03115 SRP The signal recogni 98.4 6.8E-06 1.7E-10 62.5 12.1 84 91-176 1-91 (173)
81 PRK07952 DNA replication prote 98.4 3.5E-06 8.9E-11 64.7 10.3 146 73-245 83-233 (242)
82 pfam00448 SRP54 SRP54-type pro 98.4 1.6E-05 4.1E-10 59.8 12.1 84 91-176 2-92 (196)
83 PRK06526 transposase; Provisio 98.3 9.4E-06 2.4E-10 61.5 10.7 165 59-261 68-242 (254)
84 cd00009 AAA The AAA+ (ATPases 98.3 6.7E-06 1.7E-10 62.6 9.8 80 88-179 17-96 (151)
85 PRK08181 transposase; Validate 98.3 1.1E-05 2.7E-10 61.2 10.7 159 57-243 73-242 (269)
86 pfam01695 IstB IstB-like ATP b 98.3 1.5E-05 3.7E-10 60.1 10.0 153 59-239 17-173 (178)
87 PRK12724 flagellar biosynthesi 98.2 7.9E-05 2E-09 54.8 13.7 118 85-216 218-340 (432)
88 TIGR02653 Lon_rel_chp conserve 98.2 1.9E-05 4.9E-10 59.2 10.0 157 293-454 494-670 (677)
89 cd03246 ABCC_Protease_Secretio 98.2 3.5E-05 8.8E-10 57.4 11.2 135 86-241 24-169 (173)
90 PRK10247 putative ABC transpor 98.2 2.6E-05 6.7E-10 58.3 10.4 134 86-242 29-212 (225)
91 PRK09183 transposase/IS protei 98.2 1.9E-05 4.9E-10 59.3 9.5 158 59-243 71-239 (258)
92 cd03290 ABCC_SUR1_N The SUR do 98.2 6.4E-05 1.6E-09 55.4 11.9 38 86-123 23-60 (218)
93 PRK08116 hypothetical protein; 98.1 3.4E-05 8.6E-10 57.5 10.1 134 89-244 107-244 (262)
94 PRK12726 flagellar biosynthesi 98.1 2.8E-05 7.2E-10 58.0 9.4 100 75-176 183-294 (407)
95 TIGR02982 heterocyst_DevA ABC 98.1 5.9E-05 1.5E-09 55.7 10.8 137 86-241 27-215 (220)
96 TIGR03499 FlhF flagellar biosy 98.1 3.5E-05 8.8E-10 57.4 9.6 82 89-175 193-280 (282)
97 PRK05703 flhF flagellar biosyn 98.1 0.00014 3.7E-09 52.9 12.7 84 88-176 208-297 (412)
98 PRK06921 hypothetical protein; 98.1 3.4E-05 8.6E-10 57.5 9.5 134 90-245 116-255 (265)
99 TIGR03015 pepcterm_ATPase puta 98.1 2.8E-05 7.2E-10 58.0 8.7 129 79-219 32-166 (269)
100 PRK06835 DNA replication prote 98.1 5.6E-05 1.4E-09 55.9 9.8 131 90-243 183-317 (330)
101 PRK10584 putative ABC transpor 98.1 8.6E-05 2.2E-09 54.5 10.6 136 86-241 32-220 (228)
102 COG1484 DnaC DNA replication p 98.1 2.5E-05 6.4E-10 58.4 7.9 75 89-178 104-178 (254)
103 PRK10575 iron-hydroxamate tran 98.0 0.00023 6E-09 51.3 12.7 151 85-267 32-235 (265)
104 PRK13648 cbiO cobalt transport 98.0 6.8E-05 1.7E-09 55.2 9.9 136 86-241 31-216 (269)
105 COG3480 SdrC Predicted secrete 98.0 1.2E-05 3.1E-10 60.7 6.0 149 294-460 174-341 (342)
106 pfam05621 TniB Bacterial TniB 98.0 0.0002 5.1E-09 51.9 12.2 134 75-217 45-188 (302)
107 cd03228 ABCC_MRP_Like The MRP 98.0 5.9E-05 1.5E-09 55.7 9.4 134 86-241 24-168 (171)
108 PRK09281 F0F1 ATP synthase sub 98.0 0.00019 4.8E-09 52.1 11.7 109 69-179 143-266 (502)
109 cd01133 F1-ATPase_beta F1 ATP 98.0 0.00044 1.1E-08 49.3 13.6 170 69-242 50-251 (274)
110 cd03214 ABC_Iron-Siderophores_ 98.0 4.8E-05 1.2E-09 56.4 8.5 134 86-241 21-172 (180)
111 cd03229 ABC_Class3 This class 98.0 0.00013 3.3E-09 53.2 10.6 137 86-241 22-175 (178)
112 cd03230 ABC_DR_subfamily_A Thi 98.0 0.00024 6.1E-09 51.3 12.0 136 86-241 22-169 (173)
113 cd03262 ABC_HisP_GlnQ_permease 98.0 0.00016 4E-09 52.6 11.0 136 86-241 22-209 (213)
114 PRK06731 flhF flagellar biosyn 98.0 5.5E-05 1.4E-09 55.9 8.6 98 77-176 59-163 (270)
115 COG1124 DppF ABC-type dipeptid 98.0 0.00022 5.7E-09 51.5 11.6 137 86-241 29-216 (252)
116 pfam05625 PAXNEB PAXNEB protei 98.0 0.00065 1.7E-08 48.1 13.9 60 68-127 22-84 (353)
117 cd03247 ABCC_cytochrome_bd The 98.0 0.00015 3.8E-09 52.8 10.6 134 86-241 24-170 (178)
118 cd03225 ABC_cobalt_CbiO_domain 98.0 0.00027 6.8E-09 50.9 11.8 136 86-241 23-208 (211)
119 PRK13647 cbiO cobalt transport 98.0 0.00026 6.7E-09 51.0 11.7 148 73-241 15-212 (273)
120 PRK10253 iron-enterobactin tra 98.0 0.00033 8.5E-09 50.2 12.2 137 86-241 29-218 (265)
121 PRK13634 cbiO cobalt transport 98.0 0.00015 3.8E-09 52.8 10.3 137 86-241 16-207 (276)
122 PRK12723 flagellar biosynthesi 97.9 0.00036 9.1E-09 50.0 12.2 83 89-176 173-263 (388)
123 cd00267 ABC_ATPase ABC (ATP-bi 97.9 0.0003 7.5E-09 50.6 11.7 133 86-241 21-154 (157)
124 PRK13548 hmuV hemin importer A 97.9 0.00064 1.6E-08 48.1 13.4 137 86-241 24-214 (257)
125 pfam09848 DUF2075 Uncharacteri 97.9 0.00015 4E-09 52.6 10.2 201 91-305 2-223 (348)
126 PRK08939 primosomal protein Dn 97.9 0.00021 5.4E-09 51.7 10.8 133 58-217 124-260 (306)
127 PRK10419 nikE nickel transport 97.9 0.00027 6.8E-09 50.9 11.1 153 86-270 34-242 (266)
128 PRK13632 cbiO cobalt transport 97.9 9.9E-05 2.5E-09 54.0 8.9 137 85-241 31-217 (273)
129 cd03257 ABC_NikE_OppD_transpor 97.9 0.00022 5.7E-09 51.5 10.6 137 86-241 27-220 (228)
130 PRK13636 cbiO cobalt transport 97.9 0.00047 1.2E-08 49.1 12.3 150 72-241 15-216 (285)
131 pfam00006 ATP-synt_ab ATP synt 97.9 0.0012 3.1E-08 46.1 14.4 161 74-241 1-194 (213)
132 PRK11889 flhF flagellar biosyn 97.9 0.00023 5.9E-09 51.4 10.7 85 90-176 241-329 (436)
133 CHL00059 atpA ATP synthase CF1 97.9 0.00019 4.9E-09 51.9 10.3 167 70-242 145-347 (501)
134 cd03261 ABC_Org_Solvent_Resist 97.9 0.00019 4.9E-09 52.0 10.2 136 86-241 22-211 (235)
135 cd03233 ABC_PDR_domain1 The pl 97.9 0.00022 5.7E-09 51.5 10.5 142 79-241 23-194 (202)
136 cd03216 ABC_Carb_Monos_I This 97.9 0.00034 8.7E-09 50.2 11.4 134 86-241 22-156 (163)
137 cd03256 ABC_PhnC_transporter A 97.9 0.00044 1.1E-08 49.4 11.9 137 86-241 23-219 (241)
138 cd01132 F1_ATPase_alpha F1 ATP 97.9 0.001 2.6E-08 46.7 13.8 168 68-241 49-252 (274)
139 PRK10895 putative ABC transpor 97.9 0.00063 1.6E-08 48.2 12.7 136 86-241 25-211 (241)
140 PRK11831 putative ABC transpor 97.9 0.00037 9.4E-09 49.9 11.4 137 86-241 30-219 (269)
141 PRK03992 proteasome-activating 97.9 0.0002 5E-09 51.9 10.0 83 86-186 162-244 (390)
142 COG1123 ATPase components of v 97.9 0.00045 1.1E-08 49.3 11.7 122 86-217 31-213 (539)
143 KOG3949 consensus 97.9 6.2E-05 1.6E-09 55.6 7.2 59 68-126 25-84 (360)
144 cd03238 ABC_UvrA The excision 97.9 0.00019 4.9E-09 51.9 9.8 135 86-241 17-162 (176)
145 cd03258 ABC_MetN_methionine_tr 97.9 0.00041 1.1E-08 49.5 11.5 136 86-241 27-215 (233)
146 COG4608 AppF ABC-type oligopep 97.9 0.0003 7.5E-09 50.6 10.7 137 86-240 35-183 (268)
147 cd03217 ABC_FeS_Assembly ABC-t 97.9 0.00049 1.2E-08 49.0 11.7 136 86-241 22-179 (200)
148 PRK06995 flhF flagellar biosyn 97.9 0.00049 1.2E-08 49.0 11.7 84 88-176 174-263 (404)
149 PRK13652 cbiO cobalt transport 97.9 0.00022 5.6E-09 51.5 9.8 138 85-241 25-212 (277)
150 cd03369 ABCC_NFT1 Domain 2 of 97.8 0.00037 9.5E-09 49.9 10.8 134 86-241 30-197 (207)
151 PRK11124 artP arginine transpo 97.8 0.00093 2.4E-08 46.9 12.7 136 86-241 24-215 (242)
152 cd03248 ABCC_TAP TAP, the Tran 97.8 0.00027 6.8E-09 50.9 9.8 41 86-127 36-76 (226)
153 PRK13642 cbiO cobalt transport 97.8 0.00013 3.4E-09 53.1 8.3 136 86-241 29-214 (277)
154 TIGR03324 alt_F1F0_F1_al alter 97.8 0.00074 1.9E-08 47.7 12.0 169 70-244 144-348 (497)
155 PRK11231 fecE iron-dicitrate t 97.8 0.00089 2.3E-08 47.1 12.4 136 86-241 24-212 (255)
156 TIGR03608 L_ocin_972_ABC putat 97.8 0.00024 6.2E-09 51.2 9.5 121 86-218 20-193 (206)
157 PRK13635 cbiO cobalt transport 97.8 0.0002 5.1E-09 51.8 9.1 136 86-241 29-214 (279)
158 PRK10619 histidine/lysine/argi 97.8 0.0012 2.9E-08 46.3 13.0 58 166-241 169-226 (257)
159 PRK13637 cbiO cobalt transport 97.8 0.00028 7.2E-09 50.7 9.8 137 86-241 29-219 (287)
160 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00043 1.1E-08 49.4 10.6 117 85-221 254-370 (491)
161 cd03299 ABC_ModC_like Archeal 97.8 0.00046 1.2E-08 49.2 10.8 136 86-241 21-204 (235)
162 cd03265 ABC_DrrA DrrA is the A 97.8 0.00069 1.8E-08 47.9 11.7 137 86-241 22-206 (220)
163 cd03253 ABCC_ATM1_transporter 97.8 0.00029 7.3E-09 50.7 9.7 41 86-127 23-63 (236)
164 cd03213 ABCG_EPDR ABCG transpo 97.8 0.00075 1.9E-08 47.7 11.8 142 79-241 25-186 (194)
165 cd03288 ABCC_SUR2 The SUR doma 97.8 0.00049 1.2E-08 49.0 10.8 43 84-127 41-83 (257)
166 cd03292 ABC_FtsE_transporter F 97.8 0.00087 2.2E-08 47.2 12.1 149 71-241 9-210 (214)
167 cd03268 ABC_BcrA_bacitracin_re 97.8 0.00086 2.2E-08 47.2 12.0 135 86-241 22-200 (208)
168 cd03223 ABCD_peroxisomal_ALDP 97.8 0.00026 6.7E-09 51.0 9.4 135 84-243 21-163 (166)
169 PRK13650 cbiO cobalt transport 97.8 0.00018 4.6E-09 52.1 8.5 136 86-241 26-211 (276)
170 PRK13640 cbiO cobalt transport 97.8 0.0002 5.1E-09 51.8 8.8 137 86-241 30-218 (283)
171 cd01135 V_A-ATPase_B V/A-type 97.8 0.00093 2.4E-08 47.0 12.1 168 69-242 50-256 (276)
172 cd03260 ABC_PstB_phosphate_tra 97.8 0.0032 8.2E-08 43.0 14.8 29 86-114 22-50 (227)
173 cd03245 ABCC_bacteriocin_expor 97.8 0.00037 9.3E-09 49.9 10.0 40 86-126 26-65 (220)
174 PRK05800 cobU adenosylcobinami 97.8 0.00096 2.5E-08 46.9 12.1 117 90-216 1-123 (170)
175 PRK11247 ssuB aliphatic sulfon 97.8 0.00097 2.5E-08 46.8 12.1 136 86-241 34-208 (257)
176 PRK13649 cbiO cobalt transport 97.8 0.00093 2.4E-08 47.0 12.0 136 86-241 29-219 (280)
177 pfam01637 Arch_ATPase Archaeal 97.8 0.0011 2.7E-08 46.5 12.3 131 78-216 10-153 (223)
178 cd03224 ABC_TM1139_LivF_branch 97.8 0.0011 2.7E-08 46.5 12.2 136 86-241 22-206 (222)
179 cd03266 ABC_NatA_sodium_export 97.8 0.00078 2E-08 47.5 11.5 135 86-241 27-210 (218)
180 COG1136 SalX ABC-type antimicr 97.8 0.00058 1.5E-08 48.4 10.8 136 86-241 27-216 (226)
181 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.8 0.00042 1.1E-08 49.5 10.0 41 86-127 25-65 (238)
182 COG1419 FlhF Flagellar GTP-bin 97.8 0.0013 3.4E-08 45.8 12.5 130 88-239 201-337 (407)
183 TIGR03574 selen_PSTK L-seryl-t 97.8 0.00027 7E-09 50.8 9.0 98 92-216 1-101 (249)
184 TIGR03420 DnaA_homol_Hda DnaA 97.8 0.00034 8.7E-09 50.1 9.5 95 90-218 38-132 (226)
185 PRK04195 replication factor C 97.8 0.0006 1.5E-08 48.4 10.7 63 57-124 9-71 (403)
186 PRK13657 cyclic beta-1,2-gluca 97.8 0.00039 9.9E-09 49.7 9.7 42 84-126 355-396 (585)
187 PRK10908 cell division protein 97.8 0.00089 2.3E-08 47.1 11.5 136 86-241 24-211 (222)
188 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00067 1.7E-08 48.0 10.9 127 86-243 21-148 (177)
189 PRK11614 livF leucine/isoleuci 97.8 0.0013 3.4E-08 45.8 12.4 136 86-241 27-211 (237)
190 cd03237 ABC_RNaseL_inhibitor_d 97.8 0.00072 1.8E-08 47.8 11.0 142 83-243 18-192 (246)
191 PRK13343 F0F1 ATP synthase sub 97.7 0.00063 1.6E-08 48.2 10.7 167 69-241 143-345 (502)
192 cd03254 ABCC_Glucan_exporter_l 97.7 0.00041 1.1E-08 49.5 9.7 41 86-127 25-65 (229)
193 cd03297 ABC_ModC_molybdenum_tr 97.7 0.00046 1.2E-08 49.2 9.9 134 89-241 22-206 (214)
194 cd03252 ABCC_Hemolysin The ABC 97.7 0.00051 1.3E-08 48.9 10.1 40 86-126 24-63 (237)
195 PRK10789 putative multidrug tr 97.7 0.00061 1.6E-08 48.3 10.5 42 85-127 336-377 (569)
196 COG1122 CbiO ABC-type cobalt t 97.7 0.00044 1.1E-08 49.3 9.7 136 84-241 24-213 (235)
197 TIGR03410 urea_trans_UrtE urea 97.7 0.0015 3.9E-08 45.4 12.4 137 86-241 22-206 (230)
198 PRK13547 hmuV hemin importer A 97.7 0.0015 3.7E-08 45.5 12.3 59 166-241 172-230 (273)
199 PRK11308 dppF dipeptide transp 97.7 0.00039 9.8E-09 49.7 9.4 137 86-241 37-229 (327)
200 pfam00004 AAA ATPase family as 97.7 0.00049 1.3E-08 49.0 9.9 73 93-183 1-73 (131)
201 PRK09473 oppD oligopeptide tra 97.7 0.00044 1.1E-08 49.3 9.7 138 86-241 38-236 (330)
202 PRK13641 cbiO cobalt transport 97.7 0.0012 3.1E-08 46.1 11.9 137 85-241 28-219 (286)
203 PRK09700 D-allose transporter 97.7 0.0019 4.8E-08 44.7 12.7 42 86-128 27-68 (510)
204 TIGR03269 met_CoM_red_A2 methy 97.7 0.0015 3.8E-08 45.5 12.2 44 165-217 184-227 (520)
205 cd03263 ABC_subfamily_A The AB 97.7 0.0018 4.7E-08 44.8 12.6 135 86-241 24-206 (220)
206 TIGR02211 LolD_lipo_ex lipopro 97.7 0.00058 1.5E-08 48.5 10.0 127 86-227 27-207 (221)
207 PRK11629 lolD lipoprotein tran 97.7 0.00054 1.4E-08 48.7 9.8 138 86-242 31-221 (233)
208 pfam03266 DUF265 Protein of un 97.7 0.00043 1.1E-08 49.4 9.3 112 93-221 2-137 (168)
209 COG1131 CcmA ABC-type multidru 97.7 0.00056 1.4E-08 48.6 9.8 144 78-241 20-211 (293)
210 cd00544 CobU Adenosylcobinamid 97.7 0.0015 3.8E-08 45.5 12.0 116 92-216 1-123 (169)
211 PRK13639 cbiO cobalt transport 97.7 0.0014 3.6E-08 45.6 11.8 137 85-241 23-211 (275)
212 cd03226 ABC_cobalt_CbiO_domain 97.7 0.0016 4E-08 45.3 12.1 134 86-241 22-200 (205)
213 PRK10418 nikD nickel transport 97.7 0.00051 1.3E-08 48.9 9.5 136 86-241 25-215 (254)
214 cd03251 ABCC_MsbA MsbA is an e 97.7 0.00066 1.7E-08 48.1 10.1 41 86-127 24-64 (234)
215 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 0.00044 1.1E-08 49.3 9.2 136 86-241 26-214 (218)
216 PRK10762 D-ribose transporter 97.7 0.00087 2.2E-08 47.2 10.6 41 86-127 26-66 (501)
217 cd03296 ABC_CysA_sulfate_impor 97.7 0.00086 2.2E-08 47.2 10.5 136 86-241 24-211 (239)
218 PRK13646 cbiO cobalt transport 97.7 0.00085 2.2E-08 47.2 10.5 137 86-241 29-220 (286)
219 PRK05642 DNA replication initi 97.7 0.00074 1.9E-08 47.7 10.1 99 85-218 41-139 (234)
220 PRK06315 type III secretion sy 97.7 0.0025 6.4E-08 43.8 12.8 108 69-179 145-267 (442)
221 cd01136 ATPase_flagellum-secre 97.7 0.0023 5.9E-08 44.1 12.6 107 69-179 50-171 (326)
222 PRK11153 metN DL-methionine tr 97.7 0.0015 3.7E-08 45.5 11.6 137 86-241 27-215 (343)
223 PRK13549 xylose transporter AT 97.7 0.0021 5.4E-08 44.4 12.4 41 86-127 27-69 (513)
224 pfam07015 VirC1 VirC1 protein. 97.7 0.00065 1.7E-08 48.1 9.7 84 92-176 4-92 (231)
225 PRK08084 DNA replication initi 97.7 0.0011 2.7E-08 46.5 10.8 97 88-218 43-140 (235)
226 PRK11144 modC molybdate transp 97.7 0.0015 3.9E-08 45.4 11.6 137 86-241 20-203 (352)
227 PRK13645 cbiO cobalt transport 97.7 0.0008 2.1E-08 47.4 10.2 145 77-241 25-225 (289)
228 COG1703 ArgK Putative periplas 97.7 0.0014 3.7E-08 45.6 11.3 121 91-241 52-172 (323)
229 PRK11176 lipid transporter ATP 97.7 0.00087 2.2E-08 47.2 10.2 41 85-126 363-403 (581)
230 cd03300 ABC_PotA_N PotA is an 97.7 0.00088 2.2E-08 47.1 10.2 135 86-241 22-205 (232)
231 PRK09493 glnQ glutamine ABC tr 97.7 0.0032 8.2E-08 43.0 13.1 136 86-241 23-210 (240)
232 PRK08727 hypothetical protein; 97.6 0.0006 1.5E-08 48.3 9.3 96 89-218 40-135 (233)
233 COG1618 Predicted nucleotide k 97.6 0.00042 1.1E-08 49.4 8.5 111 92-219 7-140 (179)
234 PRK11174 cysteine/glutathione 97.6 0.0011 2.8E-08 46.4 10.6 39 86-126 372-410 (588)
235 PRK09536 btuD corrinoid ABC tr 97.6 0.0025 6.5E-08 43.8 12.5 159 86-281 24-235 (409)
236 cd03259 ABC_Carb_Solutes_like 97.6 0.0017 4.3E-08 45.1 11.6 136 86-241 22-205 (213)
237 PRK13651 cobalt transporter AT 97.6 0.0023 5.8E-08 44.1 12.2 38 86-123 29-66 (304)
238 PRK13849 putative crown gall t 97.6 0.00078 2E-08 47.5 9.8 84 92-176 4-92 (231)
239 PRK00771 signal recognition pa 97.6 0.0044 1.1E-07 42.1 13.6 99 76-176 80-186 (433)
240 PRK13537 lipooligosaccharide t 97.6 0.0024 6.2E-08 43.9 12.2 136 86-241 27-210 (304)
241 TIGR03029 EpsG chain length de 97.6 0.00055 1.4E-08 48.6 8.9 54 81-136 97-150 (274)
242 PRK13643 cbiO cobalt transport 97.6 0.002 5.1E-08 44.5 11.8 39 85-123 27-65 (288)
243 PRK10535 macrolide transporter 97.6 0.0033 8.4E-08 42.9 12.9 136 85-241 29-217 (648)
244 cd03293 ABC_NrtD_SsuB_transpor 97.6 0.0011 2.8E-08 46.5 10.4 138 86-242 26-207 (220)
245 PRK13633 cobalt transporter AT 97.6 0.00041 1E-08 49.6 8.1 136 86-241 33-219 (281)
246 cd03218 ABC_YhbG The ABC trans 97.6 0.0031 7.9E-08 43.2 12.6 136 86-241 22-207 (232)
247 cd03215 ABC_Carb_Monos_II This 97.6 0.0012 3E-08 46.2 10.4 136 86-241 22-178 (182)
248 PRK10982 galactose/methyl gala 97.6 0.0014 3.5E-08 45.7 10.7 41 86-127 20-60 (491)
249 cd03289 ABCC_CFTR2 The CFTR su 97.6 0.0013 3.4E-08 45.8 10.6 39 86-126 26-64 (275)
250 pfam05729 NACHT NACHT domain. 97.6 0.00058 1.5E-08 48.4 8.8 120 91-218 1-128 (165)
251 PRK13409 putative ATPase RIL; 97.6 0.0029 7.3E-08 43.4 12.3 31 87-117 96-126 (590)
252 KOG0734 consensus 97.6 0.00019 4.9E-09 52.0 6.3 76 83-179 332-408 (752)
253 PRK13631 cbiO cobalt transport 97.6 0.002 5.2E-08 44.5 11.5 37 86-122 48-84 (320)
254 COG1245 Predicted ATPase, RNas 97.6 0.0026 6.7E-08 43.6 12.1 58 55-114 66-124 (591)
255 TIGR03415 ABC_choXWV_ATP choli 97.6 0.00052 1.3E-08 48.8 8.5 122 86-218 46-224 (382)
256 PRK13539 cytochrome c biogenes 97.6 0.0017 4.2E-08 45.1 11.0 45 85-130 23-67 (206)
257 cd03244 ABCC_MRP_domain2 Domai 97.6 0.002 5E-08 44.6 11.3 40 86-126 26-65 (221)
258 TIGR03305 alt_F1F0_F1_bet alte 97.6 0.0023 5.9E-08 44.1 11.6 108 69-178 119-243 (449)
259 cd03294 ABC_Pro_Gly_Bertaine T 97.6 0.0012 3.1E-08 46.1 10.2 137 86-241 46-235 (269)
260 PRK10771 thiQ thiamine transpo 97.6 0.0023 5.9E-08 44.1 11.6 135 86-241 21-204 (233)
261 PRK11701 phnK phosphonates tra 97.6 0.0014 3.6E-08 45.6 10.5 138 86-241 28-226 (258)
262 PRK09280 F0F1 ATP synthase sub 97.6 0.0075 1.9E-07 40.4 14.1 108 69-178 126-250 (466)
263 cd01130 VirB11-like_ATPase Typ 97.6 0.00046 1.2E-08 49.2 7.9 148 79-242 14-174 (186)
264 PRK13695 putative NTPase; Prov 97.6 0.00061 1.5E-08 48.3 8.5 34 92-125 5-39 (174)
265 PRK09544 znuC high-affinity zi 97.6 0.0011 2.8E-08 46.4 9.8 139 86-242 26-196 (251)
266 cd00550 ArsA_ATPase Oxyanion-t 97.6 0.0026 6.7E-08 43.7 11.7 38 91-128 1-38 (254)
267 TIGR03522 GldA_ABC_ATP gliding 97.6 0.004 1E-07 42.3 12.6 135 86-241 24-206 (301)
268 TIGR02142 modC_ABC molybdate A 97.6 0.0004 1E-08 49.6 7.5 192 88-299 20-274 (361)
269 PRK13536 nodulation factor exp 97.6 0.0036 9.1E-08 42.7 12.2 136 86-241 29-212 (306)
270 KOG0736 consensus 97.6 0.00021 5.4E-09 51.6 5.9 70 68-140 402-489 (953)
271 PRK07196 fliI flagellum-specif 97.6 0.0026 6.5E-08 43.7 11.4 108 69-179 136-257 (434)
272 COG1435 Tdk Thymidine kinase [ 97.5 0.00089 2.3E-08 47.1 9.1 151 88-257 2-161 (201)
273 CHL00060 atpB ATP synthase CF1 97.5 0.0065 1.7E-07 40.8 13.5 58 70-129 137-196 (480)
274 KOG0733 consensus 97.5 0.00064 1.6E-08 48.2 8.2 117 85-222 218-340 (802)
275 pfam00308 Bac_DnaA Bacterial d 97.5 0.00064 1.6E-08 48.2 8.2 103 91-218 35-139 (219)
276 cd03267 ABC_NatA_like Similar 97.5 0.0029 7.4E-08 43.4 11.6 137 86-241 43-228 (236)
277 cd03298 ABC_ThiQ_thiamine_tran 97.5 0.0012 3E-08 46.2 9.6 136 86-241 20-203 (211)
278 PRK00149 dnaA chromosomal repl 97.5 0.0006 1.5E-08 48.3 8.0 101 91-216 146-248 (447)
279 PRK12422 chromosomal replicati 97.5 0.00063 1.6E-08 48.2 8.1 100 92-216 143-242 (455)
280 pfam09807 DUF2348 Uncharacteri 97.5 0.011 2.9E-07 39.1 16.6 173 76-254 2-224 (249)
281 COG4178 ABC-type uncharacteriz 97.5 0.00098 2.5E-08 46.8 9.1 142 74-242 407-588 (604)
282 PRK08903 hypothetical protein; 97.5 0.0012 3.1E-08 46.2 9.5 97 79-216 32-128 (227)
283 PRK13545 tagH teichoic acids e 97.5 0.0031 7.9E-08 43.1 11.5 150 86-267 46-230 (549)
284 TIGR02673 FtsE cell division A 97.5 0.0015 3.8E-08 45.4 9.9 135 70-217 9-195 (215)
285 PRK12597 F0F1 ATP synthase sub 97.5 0.008 2E-07 40.2 13.6 108 69-178 122-246 (459)
286 pfam02283 CobU Cobinamide kina 97.5 0.0037 9.3E-08 42.6 11.8 114 93-216 1-120 (166)
287 cd03219 ABC_Mj1267_LivG_branch 97.5 0.0043 1.1E-07 42.1 12.1 42 86-128 22-63 (236)
288 cd03114 ArgK-like The function 97.5 0.0006 1.5E-08 48.3 7.8 38 93-130 2-39 (148)
289 TIGR03498 FliI_clade3 flagella 97.5 0.0066 1.7E-07 40.7 13.0 164 69-241 121-319 (418)
290 PRK09112 DNA polymerase III su 97.5 0.0019 4.8E-08 44.7 10.2 212 63-318 12-257 (352)
291 PRK11288 araG L-arabinose tran 97.5 0.003 7.8E-08 43.2 11.3 51 76-128 17-67 (501)
292 PRK13644 cbiO cobalt transport 97.5 0.0026 6.7E-08 43.7 10.9 56 72-129 11-66 (274)
293 cd03235 ABC_Metallic_Cations A 97.5 0.0029 7.5E-08 43.3 11.1 133 86-242 21-207 (213)
294 PRK12727 flagellar biosynthesi 97.5 0.0022 5.6E-08 44.2 10.4 86 86-176 344-435 (557)
295 TIGR03375 type_I_sec_LssB type 97.5 0.00085 2.2E-08 47.2 8.3 88 326-422 520-616 (694)
296 PRK11264 putative amino-acid A 97.5 0.0041 1.1E-07 42.2 11.8 137 86-241 23-216 (248)
297 PRK06893 DNA replication initi 97.5 0.002 5E-08 44.6 10.1 94 89-216 38-131 (229)
298 PRK11248 tauB taurine transpor 97.5 0.0024 6.2E-08 43.9 10.6 137 86-241 23-203 (255)
299 cd03269 ABC_putative_ATPase Th 97.5 0.0038 9.7E-08 42.5 11.6 136 86-241 22-202 (210)
300 PRK07960 fliI flagellum-specif 97.5 0.0048 1.2E-07 41.8 12.1 107 69-179 156-277 (455)
301 PRK10261 glutathione transport 97.5 0.0015 3.8E-08 45.4 9.5 32 86-117 38-69 (623)
302 cd03264 ABC_drug_resistance_li 97.5 0.0051 1.3E-07 41.6 12.1 134 86-241 22-203 (211)
303 PRK13538 cytochrome c biogenes 97.5 0.0045 1.2E-07 41.9 11.9 38 86-123 23-60 (204)
304 PRK13543 cytochrome c biogenes 97.5 0.0041 1E-07 42.3 11.6 138 85-242 32-212 (214)
305 PRK11650 ugpC glycerol-3-phosp 97.5 0.0033 8.3E-08 43.0 11.1 135 86-241 26-209 (358)
306 PRK11022 dppD dipeptide transp 97.5 0.002 5.1E-08 44.5 10.0 137 86-241 29-228 (327)
307 cd03232 ABC_PDR_domain2 The pl 97.5 0.0044 1.1E-07 42.0 11.7 136 84-241 27-183 (192)
308 PRK07594 type III secretion sy 97.5 0.01 2.5E-07 39.4 13.5 107 69-179 136-257 (433)
309 PRK13549 xylose transporter AT 97.5 0.0055 1.4E-07 41.3 12.2 43 165-217 159-201 (513)
310 cd03234 ABCG_White The White s 97.5 0.0021 5.4E-08 44.4 10.0 31 84-114 27-57 (226)
311 PRK07721 fliI flagellum-specif 97.5 0.0093 2.4E-07 39.7 13.3 108 69-180 137-259 (435)
312 PRK10416 cell division protein 97.5 0.0035 8.9E-08 42.8 11.1 84 90-176 295-386 (499)
313 cd03301 ABC_MalK_N The N-termi 97.4 0.0023 6E-08 44.0 10.1 135 86-241 22-205 (213)
314 PRK10790 putative multidrug tr 97.4 0.0013 3.4E-08 45.8 8.9 48 77-126 355-402 (593)
315 PRK10733 hflB ATP-dependent me 97.4 0.0021 5.2E-08 44.4 9.8 117 82-222 179-301 (644)
316 PRK09841 cryptic autophosphory 97.4 0.0033 8.5E-08 42.9 10.8 15 415-429 632-646 (726)
317 PRK04841 transcriptional regul 97.4 0.0056 1.4E-07 41.3 12.0 123 79-217 22-160 (903)
318 cd03250 ABCC_MRP_domain1 Domai 97.4 0.0011 2.8E-08 46.5 8.2 136 86-241 27-201 (204)
319 PRK08927 fliI flagellum-specif 97.4 0.012 3.2E-07 38.8 13.6 107 69-179 139-260 (441)
320 PRK10522 multidrug transporter 97.4 0.00082 2.1E-08 47.4 7.6 41 86-127 345-385 (547)
321 PRK08472 fliI flagellum-specif 97.4 0.0059 1.5E-07 41.1 11.9 165 69-241 139-335 (435)
322 KOG0780 consensus 97.4 0.005 1.3E-07 41.7 11.5 148 74-236 78-242 (483)
323 CHL00176 ftsH cell division pr 97.4 0.0013 3.2E-08 46.0 8.4 78 83-180 205-282 (631)
324 KOG0060 consensus 97.4 0.0029 7.5E-08 43.3 10.3 141 82-245 453-644 (659)
325 TIGR01241 FtsH_fam ATP-depende 97.4 0.00028 7E-09 50.8 5.0 41 82-127 86-126 (505)
326 PHA02518 ParA-like protein; Pr 97.4 0.00082 2.1E-08 47.4 7.4 79 94-176 5-85 (211)
327 PRK11160 cysteine/glutathione 97.4 0.002 5.2E-08 44.5 9.4 41 86-127 363-403 (575)
328 PRK13894 conjugal transfer ATP 97.4 0.0052 1.3E-07 41.5 11.4 145 80-241 139-293 (320)
329 PRK10070 glycine betaine trans 97.4 0.0021 5.4E-08 44.3 9.4 137 86-241 50-239 (400)
330 PRK06002 fliI flagellum-specif 97.4 0.011 2.7E-07 39.2 13.0 164 69-241 146-343 (450)
331 PRK08149 ATP synthase SpaL; Va 97.4 0.0052 1.3E-07 41.5 11.4 107 69-179 131-252 (427)
332 KOG1969 consensus 97.4 0.0021 5.4E-08 44.4 9.4 59 77-138 312-373 (877)
333 COG4088 Predicted nucleotide k 97.4 0.0014 3.5E-08 45.8 8.3 126 91-236 2-137 (261)
334 TIGR03497 FliI_clade2 flagella 97.4 0.009 2.3E-07 39.8 12.5 108 68-179 117-239 (413)
335 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 0.006 1.5E-07 41.0 11.6 139 85-242 25-214 (254)
336 PRK10636 putative ABC transpor 97.4 0.0032 8.1E-08 43.1 10.2 32 86-117 23-54 (638)
337 CHL00131 ycf16 sulfate ABC tra 97.4 0.0099 2.5E-07 39.5 12.6 27 86-112 28-54 (252)
338 PRK09099 type III secretion sy 97.4 0.0095 2.4E-07 39.6 12.5 106 70-179 145-265 (441)
339 COG1341 Predicted GTPase or GT 97.4 0.0024 6.2E-08 43.9 9.5 131 87-242 70-209 (398)
340 COG1123 ATPase components of v 97.4 0.0085 2.2E-07 39.9 12.2 138 86-241 313-504 (539)
341 cd01134 V_A-ATPase_A V/A-type 97.4 0.016 4.2E-07 37.9 13.6 169 67-242 136-349 (369)
342 COG3854 SpoIIIAA ncharacterize 97.4 0.00069 1.7E-08 47.9 6.6 122 70-220 118-254 (308)
343 PRK11607 potG putrescine trans 97.4 0.0013 3.4E-08 45.8 8.1 127 78-218 34-209 (377)
344 PRK13546 teichoic acids export 97.4 0.0055 1.4E-07 41.3 11.2 143 78-241 39-217 (264)
345 PRK13540 cytochrome c biogenes 97.4 0.0067 1.7E-07 40.7 11.6 38 86-123 23-60 (200)
346 PRK13542 consensus 97.4 0.0059 1.5E-07 41.1 11.3 66 55-127 15-80 (224)
347 PRK13900 type IV secretion sys 97.4 0.0049 1.3E-07 41.7 10.9 142 87-241 157-310 (332)
348 PRK06793 fliI flagellum-specif 97.4 0.018 4.7E-07 37.5 13.8 108 69-179 137-258 (432)
349 PRK09984 phosphonate/organopho 97.4 0.016 4.1E-07 37.9 13.5 59 166-241 169-227 (262)
350 pfam08433 KTI12 Chromatin asso 97.3 0.0011 2.7E-08 46.5 7.4 98 92-216 1-102 (266)
351 TIGR02546 III_secr_ATP type II 97.3 0.0011 2.9E-08 46.3 7.5 67 56-127 123-189 (430)
352 PRK10851 sulfate/thiosulfate t 97.3 0.0031 7.9E-08 43.1 9.7 38 86-123 24-61 (352)
353 PRK13541 cytochrome c biogenes 97.3 0.0033 8.4E-08 43.0 9.8 127 83-221 19-185 (195)
354 PRK07165 F0F1 ATP synthase sub 97.3 0.0073 1.9E-07 40.4 11.5 170 70-246 125-326 (507)
355 PRK11300 livG leucine/isoleuci 97.3 0.009 2.3E-07 39.8 11.9 133 86-241 27-228 (255)
356 PRK06936 type III secretion sy 97.3 0.0079 2E-07 40.2 11.6 106 69-179 143-264 (439)
357 pfam03308 ArgK ArgK protein. T 97.3 0.0052 1.3E-07 41.5 10.6 134 77-241 17-150 (267)
358 COG2909 MalT ATP-dependent tra 97.3 0.0017 4.2E-08 45.1 8.0 119 79-210 28-162 (894)
359 PRK12402 replication factor C 97.3 0.0016 4.1E-08 45.3 7.9 52 57-115 10-61 (337)
360 PRK11147 ABC transporter ATPas 97.3 0.0051 1.3E-07 41.6 10.4 30 86-115 25-54 (632)
361 COG1134 TagH ABC-type polysacc 97.3 0.011 2.8E-07 39.2 12.1 138 86-242 49-222 (249)
362 TIGR02315 ABC_phnC phosphonate 97.3 0.0045 1.2E-07 41.9 10.1 133 72-217 11-214 (253)
363 PRK03695 vitamin B12-transport 97.3 0.014 3.6E-07 38.4 12.6 42 84-127 17-58 (245)
364 KOG0730 consensus 97.3 0.0022 5.5E-08 44.3 8.4 129 71-221 197-330 (693)
365 PRK10867 signal recognition pa 97.3 0.019 4.9E-07 37.3 13.2 99 76-176 79-192 (453)
366 PRK11519 tyrosine kinase; Prov 97.3 0.0049 1.3E-07 41.7 10.2 14 416-429 628-641 (720)
367 PRK09435 arginine/ornithine tr 97.3 0.0069 1.8E-07 40.6 10.9 134 77-241 37-170 (325)
368 COG1120 FepC ABC-type cobalami 97.3 0.0028 7.1E-08 43.5 8.9 137 86-241 24-213 (258)
369 PRK06820 type III secretion sy 97.3 0.0088 2.2E-07 39.8 11.4 107 69-179 144-265 (445)
370 cd03295 ABC_OpuCA_Osmoprotecti 97.3 0.0019 4.7E-08 44.8 7.9 136 86-241 23-210 (242)
371 PRK05922 type III secretion sy 97.3 0.0066 1.7E-07 40.7 10.7 106 69-179 138-259 (434)
372 COG1222 RPT1 ATP-dependent 26S 97.3 0.0033 8.3E-08 43.0 9.0 111 72-205 169-279 (406)
373 PRK11000 maltose/maltodextrin 97.3 0.0016 4.1E-08 45.3 7.4 41 86-127 25-65 (369)
374 PRK09452 potA putrescine/sperm 97.3 0.0016 4E-08 45.3 7.4 129 76-217 30-206 (378)
375 COG1126 GlnQ ABC-type polar am 97.3 0.0051 1.3E-07 41.6 10.0 136 86-241 24-210 (240)
376 TIGR00635 ruvB Holliday juncti 97.3 0.00064 1.6E-08 48.2 5.4 24 93-116 33-56 (305)
377 PRK13768 GTPase; Provisional 97.3 0.0012 3E-08 46.2 6.7 85 91-176 3-105 (253)
378 PRK07471 DNA polymerase III su 97.3 0.019 4.8E-07 37.4 12.9 195 65-307 8-242 (363)
379 PRK13342 recombination factor 97.2 0.0036 9.3E-08 42.6 9.2 64 56-126 7-70 (417)
380 pfam02374 ArsA_ATPase Anion-tr 97.2 0.0018 4.6E-08 44.9 7.6 38 91-128 2-39 (304)
381 PRK11819 putative ABC transpor 97.2 0.012 3E-07 38.9 11.7 42 86-127 29-78 (556)
382 TIGR00958 3a01208 antigen pept 97.2 0.0086 2.2E-07 39.9 11.0 119 86-217 555-731 (770)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0055 1.4E-07 41.3 10.0 116 86-241 22-141 (144)
384 PRK10261 glutathione transport 97.2 0.0024 6.2E-08 43.9 8.2 45 164-217 183-227 (623)
385 PRK11819 putative ABC transpor 97.2 0.0072 1.8E-07 40.5 10.6 56 165-241 179-234 (556)
386 COG4172 ABC-type uncharacteriz 97.2 0.011 2.7E-07 39.2 11.4 121 86-217 32-216 (534)
387 COG0541 Ffh Signal recognition 97.2 0.0063 1.6E-07 40.9 10.2 100 75-176 78-191 (451)
388 PRK00411 cdc6 cell division co 97.2 0.0081 2.1E-07 40.1 10.7 151 79-241 46-205 (394)
389 cd01128 rho_factor Transcripti 97.2 0.023 5.8E-07 36.8 13.0 161 75-242 3-192 (249)
390 KOG0735 consensus 97.2 0.0068 1.7E-07 40.7 10.3 138 87-242 428-572 (952)
391 TIGR03269 met_CoM_red_A2 methy 97.2 0.018 4.5E-07 37.7 12.4 27 86-112 22-48 (520)
392 TIGR01842 type_I_sec_PrtD type 97.2 0.0041 1E-07 42.3 9.1 147 86-267 352-552 (556)
393 PRK04296 thymidine kinase; Pro 97.2 0.0056 1.4E-07 41.3 9.7 136 90-242 2-143 (197)
394 PRK11432 fbpC ferric transport 97.2 0.0028 7.2E-08 43.5 8.2 43 85-128 27-69 (351)
395 KOG0744 consensus 97.2 0.0025 6.4E-08 43.8 7.9 123 89-218 176-306 (423)
396 PRK13851 type IV secretion sys 97.2 0.007 1.8E-07 40.5 10.2 145 83-242 155-314 (343)
397 PRK06696 uridine kinase; Valid 97.2 0.0042 1.1E-07 42.2 9.0 161 80-266 16-181 (227)
398 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.2 0.012 3E-07 38.9 11.2 136 86-241 44-216 (224)
399 PRK10744 phosphate transporter 97.2 0.028 7.1E-07 36.2 13.7 28 86-113 32-59 (257)
400 PRK10636 putative ABC transpor 97.2 0.01 2.6E-07 39.4 10.8 57 164-241 164-220 (638)
401 TIGR01968 minD_bact septum sit 97.2 0.0019 4.8E-08 44.7 7.0 212 92-337 4-255 (272)
402 PRK10762 D-ribose transporter 97.2 0.015 3.8E-07 38.2 11.5 43 165-217 157-199 (501)
403 KOG0055 consensus 97.1 0.017 4.3E-07 37.7 11.8 47 81-128 367-416 (1228)
404 TIGR03496 FliI_clade1 flagella 97.1 0.013 3.2E-07 38.7 11.0 165 69-241 118-316 (411)
405 PRK03839 putative kinase; Prov 97.1 0.0034 8.8E-08 42.8 8.2 29 92-123 2-30 (180)
406 TIGR02858 spore_III_AA stage I 97.1 0.0028 7.2E-08 43.4 7.7 139 57-220 87-242 (282)
407 TIGR01242 26Sp45 26S proteasom 97.1 0.0039 9.9E-08 42.4 8.4 116 67-207 135-252 (364)
408 COG1135 AbcC ABC-type metal io 97.1 0.012 3.2E-07 38.8 11.0 138 86-242 28-217 (339)
409 PRK05688 fliI flagellum-specif 97.1 0.021 5.5E-07 37.0 12.2 165 69-241 149-347 (451)
410 PRK13544 consensus 97.1 0.0081 2.1E-07 40.1 10.0 41 86-127 23-63 (208)
411 pfam02492 cobW CobW/HypB/UreG, 97.1 0.0038 9.8E-08 42.5 8.2 82 92-176 2-93 (174)
412 TIGR01187 potA polyamine ABC t 97.1 0.0031 7.8E-08 43.2 7.7 109 95-217 1-159 (331)
413 COG0444 DppD ABC-type dipeptid 97.1 0.018 4.6E-07 37.6 11.6 136 86-240 27-227 (316)
414 COG2274 SunT ABC-type bacterio 97.1 0.004 1E-07 42.3 8.3 29 84-112 493-521 (709)
415 cd03291 ABCC_CFTR1 The CFTR su 97.1 0.012 3.1E-07 38.8 10.7 29 86-114 59-87 (282)
416 PRK13833 conjugal transfer pro 97.1 0.026 6.5E-07 36.5 12.3 135 87-242 141-287 (323)
417 COG0464 SpoVK ATPases of the A 97.1 0.0039 9.9E-08 42.4 8.0 27 86-112 272-298 (494)
418 COG1116 TauB ABC-type nitrate/ 97.1 0.016 4.1E-07 37.9 11.2 136 86-241 25-205 (248)
419 COG4618 ArpD ABC-type protease 97.1 0.0099 2.5E-07 39.5 10.1 148 86-268 358-559 (580)
420 cd03236 ABC_RNaseL_inhibitor_d 97.1 0.013 3.3E-07 38.6 10.7 50 68-120 6-56 (255)
421 PRK13341 recombination factor 97.1 0.002 5.2E-08 44.5 6.5 57 54-114 20-76 (726)
422 TIGR03018 pepcterm_TyrKin exop 97.1 0.0031 7.8E-08 43.2 7.4 45 89-133 34-80 (207)
423 cd03270 ABC_UvrA_I The excisio 97.1 0.027 7E-07 36.2 12.2 26 86-111 17-42 (226)
424 PRK13638 cbiO cobalt transport 97.1 0.014 3.5E-07 38.4 10.6 38 86-123 23-60 (271)
425 PRK11288 araG L-arabinose tran 97.1 0.021 5.3E-07 37.1 11.5 43 165-217 156-198 (501)
426 cd03231 ABC_CcmA_heme_exporter 97.1 0.021 5.3E-07 37.1 11.5 37 86-122 22-58 (201)
427 cd02037 MRP-like MRP (Multiple 97.1 0.0081 2.1E-07 40.1 9.4 36 92-127 2-37 (169)
428 TIGR03411 urea_trans_UrtD urea 97.1 0.031 7.9E-07 35.9 12.3 42 86-128 24-65 (242)
429 cd02035 ArsA ArsA ATPase funct 97.0 0.0011 2.9E-08 46.3 4.8 36 92-127 1-36 (217)
430 PRK01077 cobyrinic acid a,c-di 97.0 0.0091 2.3E-07 39.7 9.5 148 91-264 5-157 (451)
431 PRK08972 fliI flagellum-specif 97.0 0.024 6.2E-07 36.6 11.6 106 70-179 142-262 (440)
432 COG3845 ABC-type uncharacteriz 97.0 0.017 4.3E-07 37.8 10.7 133 70-217 12-198 (501)
433 TIGR01618 phage_P_loop phage n 97.0 0.011 2.8E-07 39.1 9.7 137 90-241 13-187 (229)
434 COG1132 MdlB ABC-type multidru 97.0 0.013 3.2E-07 38.7 9.9 40 86-126 351-390 (567)
435 pfam00931 NB-ARC NB-ARC domain 97.0 0.0079 2E-07 40.2 8.8 87 90-177 19-110 (285)
436 TIGR02640 gas_vesic_GvpN gas v 97.0 0.0014 3.6E-08 45.7 5.0 47 79-129 11-57 (265)
437 TIGR02173 cyt_kin_arch cytidyl 97.0 0.0013 3.4E-08 45.8 4.9 44 92-144 2-45 (173)
438 COG0552 FtsY Signal recognitio 97.0 0.017 4.4E-07 37.7 10.6 85 89-176 138-230 (340)
439 COG2087 CobU Adenosyl cobinami 97.0 0.035 8.8E-07 35.5 12.1 115 92-216 2-127 (175)
440 TIGR03258 PhnT 2-aminoethylpho 97.0 0.0089 2.3E-07 39.8 9.0 43 86-128 27-70 (362)
441 TIGR01420 pilT_fam twitching m 97.0 0.0018 4.6E-08 44.8 5.5 99 71-176 101-209 (350)
442 COG1474 CDC6 Cdc6-related prot 97.0 0.015 3.8E-07 38.1 10.1 123 79-216 33-161 (366)
443 KOG0731 consensus 97.0 0.0054 1.4E-07 41.4 7.8 89 74-183 331-419 (774)
444 pfam06068 TIP49 TIP49 C-termin 97.0 0.0023 5.8E-08 44.1 5.8 36 82-117 42-77 (395)
445 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0036 9.1E-08 42.7 6.8 90 77-177 70-159 (264)
446 COG0410 LivF ABC-type branched 96.9 0.023 5.8E-07 36.8 10.8 120 86-217 25-195 (237)
447 TIGR03265 PhnT2 putative 2-ami 96.9 0.0081 2.1E-07 40.1 8.5 41 86-127 26-66 (353)
448 PRK09700 D-allose transporter 96.9 0.027 6.9E-07 36.3 11.1 43 165-217 161-203 (510)
449 TIGR01969 minD_arch cell divis 96.9 0.013 3.4E-07 38.5 9.5 143 91-243 2-197 (258)
450 pfam09140 MipZ ATPase MipZ. Mi 96.9 0.0032 8.2E-08 43.0 6.3 30 99-128 10-39 (261)
451 TIGR01186 proV glycine betaine 96.9 0.013 3.3E-07 38.6 9.3 119 86-217 15-189 (372)
452 KOG0728 consensus 96.9 0.014 3.6E-07 38.3 9.5 125 71-215 164-292 (404)
453 pfam05496 RuvB_N Holliday junc 96.9 0.0046 1.2E-07 41.9 6.9 58 53-115 15-75 (234)
454 COG1110 Reverse gyrase [DNA re 96.9 0.0054 1.4E-07 41.4 7.3 94 87-181 94-217 (1187)
455 PRK10982 galactose/methyl gala 96.9 0.033 8.4E-07 35.7 11.3 43 165-217 150-192 (491)
456 PRK10938 putative molybdenum t 96.9 0.029 7.5E-07 36.0 11.0 31 86-116 25-55 (490)
457 PRK00080 ruvB Holliday junctio 96.9 0.0045 1.1E-07 42.0 6.8 65 55-126 18-84 (328)
458 PRK09401 reverse gyrase; Revie 96.9 0.01 2.6E-07 39.4 8.6 219 87-323 90-385 (1176)
459 PRK05541 adenylylsulfate kinas 96.9 0.0018 4.6E-08 44.9 4.8 41 88-128 5-45 (176)
460 PRK07414 cob(I)yrinic acid a,c 96.9 0.037 9.5E-07 35.3 11.5 134 86-238 18-170 (178)
461 pfam00437 GSPII_E Type II/IV s 96.9 0.0023 5.8E-08 44.1 5.2 91 77-177 126-219 (283)
462 TIGR00959 ffh signal recogniti 96.9 0.011 2.9E-07 39.0 8.7 160 77-243 79-282 (439)
463 cd03240 ABC_Rad50 The catalyti 96.8 0.02 5.1E-07 37.2 9.9 62 165-244 137-199 (204)
464 TIGR01243 CDC48 AAA family ATP 96.8 0.023 5.7E-07 36.9 10.2 134 68-224 220-355 (980)
465 COG1129 MglA ABC-type sugar tr 96.8 0.032 8E-07 35.8 10.9 142 75-229 20-228 (500)
466 PRK04196 V-type ATP synthase s 96.8 0.053 1.4E-06 34.1 12.4 168 69-241 124-329 (460)
467 TIGR02769 nickel_nikE nickel i 96.8 0.014 3.7E-07 38.3 9.1 143 79-241 24-226 (267)
468 TIGR00750 lao LAO/AO transport 96.8 0.0017 4.4E-08 45.0 4.4 96 79-176 28-145 (333)
469 COG2256 MGS1 ATPase related to 96.8 0.0031 8E-08 43.1 5.7 65 55-126 17-81 (436)
470 TIGR01166 cbiO cobalt ABC tran 96.8 0.01 2.7E-07 39.3 8.3 120 86-217 14-185 (190)
471 COG4619 ABC-type uncharacteriz 96.8 0.016 4.1E-07 37.9 9.3 123 86-218 25-193 (223)
472 PRK11147 ABC transporter ATPas 96.8 0.033 8.5E-07 35.6 10.9 41 164-217 171-211 (632)
473 pfam01583 APS_kinase Adenylyls 96.8 0.0023 5.9E-08 44.0 4.9 40 89-128 1-40 (157)
474 TIGR01184 ntrCD nitrate ABC tr 96.8 0.006 1.5E-07 41.0 7.0 121 86-218 7-174 (230)
475 pfam00265 TK Thymidine kinase. 96.8 0.036 9.2E-07 35.4 11.0 131 90-242 1-137 (175)
476 COG4988 CydD ABC-type transpor 96.8 0.015 3.9E-07 38.1 9.0 30 86-115 343-372 (559)
477 KOG0058 consensus 96.8 0.033 8.3E-07 35.7 10.7 102 313-425 495-622 (716)
478 COG4930 Predicted ATP-dependen 96.8 0.0052 1.3E-07 41.5 6.6 137 295-437 502-653 (683)
479 COG0003 ArsA Predicted ATPase 96.8 0.0082 2.1E-07 40.1 7.6 39 91-129 3-41 (322)
480 COG2255 RuvB Holliday junction 96.8 0.006 1.5E-07 41.1 6.9 63 91-179 53-115 (332)
481 PTZ00243 ABC transporter; Prov 96.8 0.011 2.7E-07 39.3 8.0 42 86-127 682-729 (1560)
482 TIGR00064 ftsY signal recognit 96.8 0.039 9.9E-07 35.1 10.9 56 88-143 80-139 (284)
483 PRK02118 V-type ATP synthase s 96.8 0.061 1.6E-06 33.7 12.0 164 69-241 121-319 (432)
484 COG3840 ThiQ ABC-type thiamine 96.8 0.033 8.4E-07 35.7 10.4 135 86-241 21-204 (231)
485 pfam01580 FtsK_SpoIIIE FtsK/Sp 96.7 0.015 3.8E-07 38.2 8.6 144 71-217 19-198 (202)
486 COG0470 HolB ATPase involved i 96.7 0.014 3.5E-07 38.4 8.5 106 92-217 26-147 (325)
487 PRK12608 transcription termina 96.7 0.033 8.4E-07 35.7 10.3 94 86-182 128-234 (379)
488 COG2894 MinD Septum formation 96.7 0.01 2.6E-07 39.3 7.7 87 92-179 5-125 (272)
489 COG0378 HypB Ni2+-binding GTPa 96.7 0.011 2.7E-07 39.2 7.8 87 91-179 14-108 (202)
490 PRK00090 bioD dithiobiotin syn 96.7 0.026 6.7E-07 36.4 9.6 147 93-264 2-175 (223)
491 KOG0732 consensus 96.7 0.025 6.3E-07 36.6 9.5 389 11-430 203-660 (1080)
492 KOG0727 consensus 96.7 0.019 4.9E-07 37.4 8.8 123 72-214 173-299 (408)
493 KOG3062 consensus 96.7 0.0068 1.7E-07 40.7 6.5 76 92-177 3-83 (281)
494 PRK09580 sufC cysteine desulfu 96.7 0.033 8.3E-07 35.7 9.9 28 85-112 22-49 (248)
495 KOG0739 consensus 96.7 0.029 7.3E-07 36.1 9.5 86 79-182 155-240 (439)
496 PRK10865 protein disaggregatio 96.7 0.0011 2.9E-08 46.4 2.3 191 77-293 185-386 (857)
497 KOG0061 consensus 96.6 0.011 2.8E-07 39.2 7.3 171 84-289 50-281 (613)
498 KOG0054 consensus 96.6 0.026 6.7E-07 36.4 9.3 42 86-127 543-590 (1381)
499 COG0593 DnaA ATPase involved i 96.6 0.012 3.1E-07 38.8 7.5 76 89-181 112-189 (408)
500 cd03227 ABC_Class2 ABC-type Cl 96.6 0.02 5E-07 37.3 8.6 27 89-115 20-46 (162)
No 1
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=100.00 E-value=0 Score=1235.91 Aligned_cols=450 Identities=48% Similarity=0.815 Sum_probs=426.3
Q ss_pred CCCC-CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC----------CCCCCC--CCCCCCCCEECCCCCCC
Q ss_conf 9876-5278987675636300771788898670798852477655----------544444--55566564031333455
Q gi|254780334|r 1 MVKI-RSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQ----------RFSKTI--KQGHSISLFMLSEESIE 67 (479)
Q Consensus 1 m~k~-k~~y~C~~Cg~~~~kW~G~Cp~C~~Wnt~~e~~~~~~~~~----------~~~~~~--~~~~~~~~~~l~~~~~~ 67 (479)
|||+ |+.|+|++|||+||||+||||.|++||||+|+.....+.. ...... ......++.+|++|+.+
T Consensus 1 mAK~Pk~~FvC~~CG~~~p~W~G~C~~C~aw~t~~E~~~~~vssGtn~~s~~a~~~~~~~~~~g~~~~~K~~~~s~I~~~ 80 (481)
T TIGR00416 1 MAKAPKSKFVCQSCGAESPKWLGKCPACHAWNTLTEERLKKVSSGTNARSLKAQKNRRASLKAGVPQAQKAQTISAIELE 80 (481)
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHC
T ss_conf 98888774202235774504647388866531377787765302310001011245553115886521024123433420
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC---CCC
Q ss_conf 66632378124888865985787089995498751889999999998503981999986463047888875201---577
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLN---TIN 144 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~---~~~ 144 (479)
+.+|++||+.|||||||||++||+++||+|+||+|||||+||+++.+|++-.++||||||||..|+++||.||| +..
T Consensus 81 e~~rf~s~~~ElDrVLGGGivpGsliLiGG~PG~GKSTLLLqV~~~LA~~~~~~LYVsGEES~~Q~klRA~RLGit~~~~ 160 (481)
T TIGR00416 81 EEPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNSMKVLYVSGEESLQQIKLRATRLGITDLVE 160 (481)
T ss_pred CCCEEECCCCCCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCC
T ss_conf 67605306641001106722244169846889963567899999998404881689972301677888875455324787
Q ss_pred C--------------CHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5--------------10000347889999999731698289972168766542044556367999999999997530797
Q gi|254780334|r 145 S--------------SVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGV 210 (479)
Q Consensus 145 ~--------------~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i 210 (479)
+ ++++++||++++|... +++.+|.++||||||+||.+++.|+|||++||||||..|+++||.++|
T Consensus 161 ~sqaqdGinnlahdG~L~~L~Et~~e~I~~~-~e~~~P~~~ViDSIQ~ly~~di~SaPGSVsQVRE~t~~Lmr~AKt~~i 239 (481)
T TIGR00416 161 PSQAQDGINNLAHDGNLYVLSETNLEQICAE-IEELNPQVVVIDSIQTLYLPDISSAPGSVSQVRECTAELMRLAKTRGI 239 (481)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-HHHHCCCEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 0234432454302675321575798999999-985299489991421000000025888423888999999876521686
Q ss_pred EEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCC
Q ss_conf 89998630366543311457877530278515556665442156763202567651279985156631101404555114
Q gi|254780334|r 211 AMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSD 290 (479)
Q Consensus 211 ~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~ 290 (479)
++|+||||||||.|||||+||||||||||||| |+++.||+||++|||||+|+|+|||+|+++||.||.|||.+||++
T Consensus 240 aifiVGHVTKeGsiAGPkvLEH~vD~vLyfeG---d~~~~~R~LRS~KNRFGat~E~G~FeM~e~GL~ev~nPS~iFL~~ 316 (481)
T TIGR00416 240 AIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG---DRDSRFRILRSVKNRFGATNEIGIFEMTEQGLREVLNPSAIFLSR 316 (481)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHEECCC---CCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 57997004356754340466634331101158---875344401000156787342101000023356453145664157
Q ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCC
Q ss_conf 76676734899730489741155331011577877247760468666555589887511110246222100145611154
Q gi|254780334|r 291 RDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYRISE 370 (479)
Q Consensus 291 ~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~ 370 (479)
|++..+||+|+++|||||||+|||||||++|.|++|||.++|+|+|||+|++||||||.+++|.++|+|+||+||+|++|
T Consensus 317 ~~e~~~GSsitv~~EGtRPLlvEiQALVs~~s~anPrR~A~G~d~NRL~~LlAvLek~~Gl~l~~~Dvf~~V~GGvkv~E 396 (481)
T TIGR00416 317 REEVMSGSSITVALEGTRPLLVEIQALVSPTSFANPRRVATGLDQNRLALLLAVLEKRLGLPLADQDVFLNVAGGVKVSE 396 (481)
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCEEECC
T ss_conf 64566673012342373488888875226143688631004422568999999987640661111734798623505410
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHH-CCCCCEEEEEECC
Q ss_conf 325879999999972488688785999874247316340788999999997699899977576532-2858808998383
Q gi|254780334|r 371 PAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGE-CKIGMLDRQYIKN 449 (479)
Q Consensus 371 pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e-~~~~~i~i~~v~~ 449 (479)
||+|||+++||+||++|+|+|++++|+|||||.|+||||+.++.|++||+++|||++|||+.|.+. ....+|++|+|++
T Consensus 397 pa~DLA~~~a~~SSFrdr~~~~~~~~lGEVGL~G~ir~vp~~~~R~kEaak~GFkraIvP~~~~~~W~~~~gi~~~~v~~ 476 (481)
T TIGR00416 397 PAVDLALLIALVSSFRDRPLDPDLVILGEVGLAGEIRPVPSLEERLKEAAKLGFKRAIVPKANLPKWTAPEGIKVIGVKK 476 (481)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEHHH
T ss_conf 57889999999987517887856388876437770400776316799998468634421478888752445624760344
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780334|r 450 LSDLV 454 (479)
Q Consensus 450 l~e~i 454 (479)
+.+++
T Consensus 477 v~~al 481 (481)
T TIGR00416 477 VADAL 481 (481)
T ss_pred HHHHC
T ss_conf 65409
No 2
>PRK11823 DNA repair protein RadA; Provisional
Probab=100.00 E-value=0 Score=1184.52 Aligned_cols=453 Identities=53% Similarity=0.872 Sum_probs=433.9
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 98765278987675636300771788898670798852477655544444555665640313334556663237812488
Q gi|254780334|r 1 MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFMLSEESIEEESRIQTHIDELD 80 (479)
Q Consensus 1 m~k~k~~y~C~~Cg~~~~kW~G~Cp~C~~Wnt~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Ri~TGi~eLD 80 (479)
|||.|++|+|++|||+++||+||||+||+||||+|+.....+..............++.+|++++.++.+|++||+.|||
T Consensus 1 MaK~k~~y~C~~CG~~~~kW~GkCp~C~~WnTl~E~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~R~~Tgi~ElD 80 (454)
T PRK11823 1 MAKAKTAYVCQECGAESPKWLGRCPACGAWNTLVEAVAAEAAKSRRSRAGSAGSASKPVKLSDVEAEEEPRISTGIGELD 80 (454)
T ss_pred CCCCCCEEECCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCCCCHHHH
T ss_conf 99888717998899978871435879898645898742667777665555567777756524425666553237855665
Q ss_pred HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHH
Q ss_conf 88659857870899954987518899999999985039819999864630478888752015775100003478899999
Q gi|254780334|r 81 RVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIA 160 (479)
Q Consensus 81 rvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~ 160 (479)
||||||++|||++||+|+||+|||||+||++..++ ++.+|||+|||||.+|+++||+||++..+++++++|+++++|++
T Consensus 81 RVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGEES~~Qik~RA~RLg~~~~~l~l~~et~l~~Il~ 159 (454)
T PRK11823 81 RVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGEESLQQIKLRAERLGLPSDNLYLLAETNLEDILA 159 (454)
T ss_pred HCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHH
T ss_conf 22158720664899507998889999999999985-59957998150157899999997588888737885368999999
Q ss_pred HHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEE
Q ss_conf 99731698289972168766542044556367999999999997530797899986303665433114578775302785
Q gi|254780334|r 161 TLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF 240 (479)
Q Consensus 161 ~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ 240 (479)
+ +++.+|+++|||||||+|+++++++|||++|||+|+..|+++||++++++|+||||||||+|||||+||||||+||||
T Consensus 160 ~-i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEHmVDtVl~f 238 (454)
T PRK11823 160 T-IEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYF 238 (454)
T ss_pred H-HHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCEEEEE
T ss_conf 9-986099889994311154156677899789999999999999974498289999772677646614522201046875
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 15556665442156763202567651279985156631101404555114766767348997304897411553310115
Q gi|254780334|r 241 EGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLVVP 320 (479)
Q Consensus 241 ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~ 320 (479)
|| ++++.||+||++|||||+|+|+|+|+|+++||.+|+|||++|+++|+++.+|++++++|||+||+++||||||++
T Consensus 239 EG---d~~~~~RiLR~~KNRFG~t~EiGvFeM~~~GL~~v~nPS~~Fls~~~~~~~Gs~i~~~~EGsRpllvEvQALv~~ 315 (454)
T PRK11823 239 EG---DRHSRFRILRAVKNRFGATNEIGVFEMTEKGLREVSNPSELFLSERDENVPGSAVTVTMEGTRPLLVEIQALVSP 315 (454)
T ss_pred CC---CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHCC
T ss_conf 15---766550245631246776660589986168845668877998626887877507998885064240103446156
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 77877247760468666555589887511110246222100145611154325879999999972488688785999874
Q gi|254780334|r 321 TSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEV 400 (479)
Q Consensus 321 ~~~~~p~R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl 400 (479)
+.+++|||+++|+|.||++||+||||||++++|+++|||+|++||+|++|||+|||||+||+||+.++|+|++++|+|||
T Consensus 316 ~~~~~PrR~~~G~d~~Rl~mllAVlek~~~~~l~~~DVyvnv~GG~ki~epa~DLAva~Ai~SS~~~~~i~~~~~~~GEV 395 (454)
T PRK11823 316 SSFGNPRRVAVGLDQNRLAMLLAVLEKRLGLPLSDQDVYVNVVGGLKITEPAADLAVALAIASSLRDRPLPPDTVVFGEV 395 (454)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 77888715780587899999999999984986226647999147841578547799999999870497789882899941
Q ss_pred ECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 24731634078899999999769989997757653228588089983839999998614
Q gi|254780334|r 401 SLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITA 459 (479)
Q Consensus 401 ~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~~~~i~i~~v~~l~e~i~~l~~ 459 (479)
||+||||||+++.+|+.||+|+||+++|+|+.|... ..++++|+++++|+|+++.+++
T Consensus 396 GL~GEiR~V~~~~~Rl~EA~rlGf~~~ivP~~~~~~-~~~~i~i~~v~~i~e~i~~l~~ 453 (454)
T PRK11823 396 GLSGEIRPVPRGEERLKEAAKLGFKRAIVPKANPKK-APEGIEVIGVKTLKEALELLFG 453 (454)
T ss_pred CCCCEEECCCCHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCEEEEECCHHHHHHHHHC
T ss_conf 367034268988999999998699889957877767-9999799995979999999758
No 3
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=1159.35 Aligned_cols=452 Identities=52% Similarity=0.867 Sum_probs=430.5
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC--CCCCCCC-CCCCCEECCCCCCCCCCCCCCCCH
Q ss_conf 9876527898767563630077178889867079885247765554--4444555-665640313334556663237812
Q gi|254780334|r 1 MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRF--SKTIKQG-HSISLFMLSEESIEEESRIQTHID 77 (479)
Q Consensus 1 m~k~k~~y~C~~Cg~~~~kW~G~Cp~C~~Wnt~~e~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~~~~~~~~Ri~TGi~ 77 (479)
|||+|+.|+|++|||++|||+||||+||+||||+|+...+...... ......+ .++++.++.+++.++.+|++||+.
T Consensus 1 MaK~~t~f~C~~CG~~s~KW~GkCp~Cg~Wns~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~Ri~tg~~ 80 (456)
T COG1066 1 MAKKKTAFVCQECGYVSPKWLGKCPACGAWNTLVEEVLAASPGGAPNKRRSGKAGSEPSKVLKLSDIELEEEPRISTGIE 80 (456)
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCHH
T ss_conf 99766278844578878621555988787431667302356555443344544567755414401011222242357818
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH
Q ss_conf 48888659857870899954987518899999999985039819999864630478888752015775100003478899
Q gi|254780334|r 78 ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED 157 (479)
Q Consensus 78 eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~ 157 (479)
|||||||||++|||++||+|+||+|||||+||+++++++++ +|||||||||..|+++||+||++..++++++.|+++++
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~ 159 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLED 159 (456)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHH
T ss_conf 88765367723661799736898779899999999987059-57999677678999999998289964557741128999
Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEE
Q ss_conf 99999731698289972168766542044556367999999999997530797899986303665433114578775302
Q gi|254780334|r 158 IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAV 237 (479)
Q Consensus 158 il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~v 237 (479)
|+.. +++.+|+++|||||||+|+++++|+|||++|||+|+.+|+++||++|+++|++|||||||+|||||+||||||+|
T Consensus 160 I~~~-l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtV 238 (456)
T COG1066 160 IIAE-LEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTV 238 (456)
T ss_pred HHHH-HHHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHEEEEEEEE
T ss_conf 9999-985499789996541230263357998589999999999999987597399998882466326840043653689
Q ss_pred EEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEE
Q ss_conf 78515556665442156763202567651279985156631101404555114766767348997304897411553310
Q gi|254780334|r 238 LYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSL 317 (479)
Q Consensus 238 l~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQAL 317 (479)
+|||| |+++.||+||++|||||+|||+|||+|+++||.+|.|||++|+++|.++.+||+++++|||+||+++|||||
T Consensus 239 lyFEG---d~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~~~EGtRpllvEvQAL 315 (456)
T COG1066 239 LYFEG---DRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVVVMEGTRPLLVEIQAL 315 (456)
T ss_pred EEEEC---CCCCCEEEEEHHCCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEC
T ss_conf 99830---577755650032136776553268898438846803827867422677899867999996266359886120
Q ss_pred ECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 11577877247760468666555589887511110246222100145611154325879999999972488688785999
Q gi|254780334|r 318 VVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYF 397 (479)
Q Consensus 318 v~~~~~~~p~R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~ 397 (479)
++++.+++|||.++|+|.||++|++||||||++++++++|+|+|++||+|+.|||+|||+|+||+||+.++|+|++++|+
T Consensus 316 v~~s~~~nPrR~~~G~D~nRl~mllAVLek~~gl~l~~~DvyvnvaGG~ki~EPAaDLAva~Al~SS~~~~~lp~~~v~~ 395 (456)
T COG1066 316 VSPSSFGNPRRVAVGLDQNRLAMLLAVLEKRLGLPLGDQDVYVNVAGGVKVTEPAADLAVALALVSSFRNRPLPQDTVVF 395 (456)
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 36666888702760537558999999999861986668637998048776577268899999999986388899871899
Q ss_pred EEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 87424731634078899999999769989997757653228588089983839999998614
Q gi|254780334|r 398 GEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITA 459 (479)
Q Consensus 398 GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~~~~i~i~~v~~l~e~i~~l~~ 459 (479)
|||||+||||||+.++.|++||.++||+++|+|+.|.. ...++++++|++|.|+++.+..
T Consensus 396 GEvgL~GeIR~V~~~~~RlkEA~klGFk~aivP~~~~~--~~~~~~~~~v~~l~~a~~~~~~ 455 (456)
T COG1066 396 GEVGLSGEIRPVPRGERRLKEAAKLGFKRAIVPKGNIP--LPEGIKVIGVSTLAEALEVVFD 455 (456)
T ss_pred EECCCCCEEEECCCHHHHHHHHHHCCCCEEECCCCCCC--CCCCCEEEEEECHHHHHHHHHC
T ss_conf 95035742542675889999999758977974687677--8888159985009999998744
No 4
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=100.00 E-value=0 Score=1018.96 Aligned_cols=372 Identities=55% Similarity=0.921 Sum_probs=357.1
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 89876756363007717888986707988524776555444445556656403133345566632378124888865985
Q gi|254780334|r 8 YFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFMLSEESIEEESRIQTHIDELDRVTGGGF 87 (479)
Q Consensus 8 y~C~~Cg~~~~kW~G~Cp~C~~Wnt~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl 87 (479)
|+|++|||+++||+||||+||+||||+|+...+.+..... ........++.+|++++.++.+|++||+.|||||||||+
T Consensus 1 y~C~~CG~~~~kW~GkCp~Cg~WnTl~E~~~~~~~~~~~~-~~~~~~~~~~~~l~~v~~~~~~R~~Tgi~ElDRVLGGGi 79 (372)
T cd01121 1 YVCSECGYVSPKWLGKCPECGEWNTLVEEIEPSSSSGSGG-RSSGGSASKVIPLSDIEAEEEERIPTGIEELDRVLGGGL 79 (372)
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCEEHHHCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 9998899978872426979998643899963678777666-556777677557344365655544478366654005773
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCC
Q ss_conf 78708999549875188999999999850398199998646304788887520157751000034788999999973169
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEK 167 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~ 167 (479)
+|||++||+|+||+|||||+||++.++++++++|||+|||||.+||++||+||++..+++++++|+++++|+++ +++.+
T Consensus 80 VpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~Il~~-i~~~k 158 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS-IEELK 158 (372)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH-HHHHC
T ss_conf 06717998259988688999999999986399389982456789999899985878877278843569999999-99719
Q ss_pred CCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCC
Q ss_conf 82899721687665420445563679999999999975307978999863036654331145787753027851555666
Q gi|254780334|r 168 PDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNT 247 (479)
Q Consensus 168 ~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~ 247 (479)
|+++|||||||+|+++++++|||++|||+|+..|+++||++++++|+||||||+|+|||||+||||||+|+|||| ++
T Consensus 159 P~~lIIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVGHVTK~G~iAGPkvLEHmVDtVl~fEg---d~ 235 (372)
T cd01121 159 PDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG---DR 235 (372)
T ss_pred CCEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHEEEEEEEEEECC---CC
T ss_conf 988999562202037767799878999999999999998619739999876268863774031002136887515---77
Q ss_pred CCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCE
Q ss_conf 54421567632025676512799851566311014045551147667673489973048974115533101157787724
Q gi|254780334|r 248 QYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPR 327 (479)
Q Consensus 248 ~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~ 327 (479)
++.||+||++|||||+|+|+|+|+|+++||.+|+|||++|+++|+++.+|++++++|||+||+++||||||+++.+++||
T Consensus 236 ~~~~R~LR~~KNRFG~t~EiGvFeM~~~GL~~V~nPS~~Fl~~~~~~~~Gs~v~~~~EGsRpllvEiQALv~~s~~~~Pr 315 (372)
T cd01121 236 HSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTVVMEGSRPLLVEVQALVSPTSYANPR 315 (372)
T ss_pred CCCEEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCC
T ss_conf 65503567411567775405888731687056368569886269888886379988740465056622020578889996
Q ss_pred EEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 776046866655558988751111024622210014561115432587999999997
Q gi|254780334|r 328 RTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYRISEPAADVAVAAALISS 384 (479)
Q Consensus 328 R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs 384 (479)
|+++|+|.||++||+||||||++++|.++|||+|++||+|++|||+|||||+||+||
T Consensus 316 R~~~G~d~~Rl~ml~AVlek~~~~~l~~~Dv~vnv~GG~ki~epa~DLAv~~Ai~SS 372 (372)
T cd01121 316 RVAVGFDPNRLSMLLAVLEKRLGLPLADQDVFVNVAGGLKITEPAADLAVALAIVSS 372 (372)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCCHHHHHHHHHHHCC
T ss_conf 567367888899999999997399866776899867886636836889999998729
No 5
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=100.00 E-value=0 Score=363.51 Aligned_cols=203 Identities=27% Similarity=0.393 Sum_probs=173.0
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHH-HHCCCCCCCHHE
Q ss_conf 237812488886598578708999549875188999999999850398199998646-304788887-520157751000
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-AIGQIRLRA-QRLNTINSSVYI 149 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-s~~Qi~~Ra-~Rl~~~~~~i~~ 149 (479)
|+||+++||++||||+++|++++|+|+||+|||||+||++.++++.|.+|+|+++|+ +.++++..+ .|.....+++++
T Consensus 1 IsTG~~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~i~v 80 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIV 80 (218)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 99880789998569987887999989999849999999999986369869999665567699999987536665305146
Q ss_pred ECCCCHHHHHHH---H--HHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHHHHHCCCEEEEEEEECCC
Q ss_conf 034788999999---9--73169828997216876654204455636799999999---999753079789998630366
Q gi|254780334|r 150 AIETNVEDIIAT---L--ITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA---MIQYAKKNGVAMVLVGHVTKE 221 (479)
Q Consensus 150 ~~e~~l~~il~~---~--i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~---L~~~AK~~~i~vilighvTK~ 221 (479)
..+.++++.... + +.+.+++++||||||++|+.++++.++++.|+|+|+.. |.++||++++++++++||||+
T Consensus 81 ~~~~~~~~~~~~i~~~~~~~~~~~~lvViDSi~tl~~~e~~~~~~~~~~~r~l~~~~~~L~~~Ak~~~~~vil~nqVt~~ 160 (218)
T cd01394 81 FEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSD 160 (218)
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf 26787688999999999764147729999140455455406896479999999999999999987669889999215884
Q ss_pred CC-----CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf 54-----3311457877530278515556665442156763202567651279985156631
Q gi|254780334|r 222 GQ-----IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQ 278 (479)
Q Consensus 222 G~-----iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~ 278 (479)
+. .+|+++|||+||+++|||+. + ..+|++|..||||||++|+++|+|+++||.
T Consensus 161 ~~~~~~~p~GG~~LeH~vd~vl~~e~~---~-~~~R~~~~~Knr~gp~~e~~~F~mt~~Gle 218 (218)
T cd01394 161 VGSGSVRPLGGHTLEHWSKVILRLEKL---R-VGTRRAVLEKHRFRPEGSSVYFRITDKGIE 218 (218)
T ss_pred CCCCCCCCCCCHHHHHHCCEEEEEECC---C-CCEEEEEEEECCCCCCCCEEEEEECCCCCC
T ss_conf 577756556720414110289999848---8-967999997589999886899997288879
No 6
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=100.00 E-value=2.8e-43 Score=335.25 Aligned_cols=207 Identities=25% Similarity=0.410 Sum_probs=170.6
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC----CCHHHHHHHHHHCCCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864----63047888875201577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE----EAIGQIRLRAQRLNTIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E----Es~~Qi~~Ra~Rl~~~~ 144 (479)
.+|+|||+.+||++||||+++|++++|+|+||+||||||||++.+.+++|++|+|+++| |+..|+.. .......
T Consensus 2 ~erisTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE~~~~er~~qi~~--~~~~~~~ 79 (224)
T PRK09361 2 EELLPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTEGLSPERFKQIAG--EDFEELL 79 (224)
T ss_pred CCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHC--CCHHHHH
T ss_conf 85303797899986269988887999989999859999999999999749909996787678899999856--5734542
Q ss_pred CCHHEECCCCHHHHHHH-----HHHCCCCCEEEECHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 51000034788999999-----97316982899721687665420445563--679999999999975307978999863
Q gi|254780334|r 145 SSVYIAIETNVEDIIAT-----LITNEKPDLVIIDSIQTLWSQTAESSPGT--VIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 145 ~~i~~~~e~~l~~il~~-----~i~~~~~~~vVIDSIQtl~~~~~~s~~Gs--vsQvre~~~~L~~~AK~~~i~viligh 217 (479)
+++.+..+.++++.... .+...+++++||||||+++..+.+...++ ..++..+...|.++||++++++++++|
T Consensus 80 ~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~lvVIDSi~~~~~~e~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vvl~nq 159 (224)
T PRK09361 80 SNIIIFEPSSFEEQREAIQKAEKIAKENVGLIVLDSATSLYRLELDDNDNSKLNRELGKQISHLLSLARKHNIAVVITNQ 159 (224)
T ss_pred HCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 06147247988999999999998750587389996230100000145765899999999999999999971986999966
Q ss_pred ECCCCC-----CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEC
Q ss_conf 036654-----3311457877530278515556665442156763202567651279985156631101
Q gi|254780334|r 218 VTKEGQ-----IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVS 281 (479)
Q Consensus 218 vTK~G~-----iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~ 281 (479)
||++.. .|||+.|+|+||++++||.. + ...|.+|.+||||||++|++.|+|+++|+.+|+
T Consensus 160 V~~~~~~~~~~paGg~~l~h~~d~~l~le~~---~-~~~R~l~v~Knr~~p~~~~~~f~it~~Gi~~v~ 224 (224)
T PRK09361 160 VYSDIDSDGLRPLGGHTLEHWSKAILRLEKL---R-NGKRRATLEKHRSRPEGESAEFRITDRGIEDVD 224 (224)
T ss_pred EEECCCCCCCCCCCCCCEEEEEEEEEEEEEC---C-CCEEEEEEEECCCCCCCCEEEEEECCCCCCCCC
T ss_conf 8852676544446541222105799999625---8-977999997589899996799998689864579
No 7
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00 E-value=1e-31 Score=250.94 Aligned_cols=202 Identities=26% Similarity=0.428 Sum_probs=162.1
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCH--HHHHHHHHHCCC-
Q ss_conf 237812488886598578708999549875188999999999850------39819999864630--478888752015-
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY------KKHRITYVSGEEAI--GQIRLRAQRLNT- 142 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~------~g~~vlYvS~EEs~--~Qi~~Ra~Rl~~- 142 (479)
++||+++||++||||+++|++++|+|+||+|||+||||+|.+.+. .+++|+|++.|.+. +.+...+++.+.
T Consensus 1 isTG~~~lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~Rl~qia~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 98885789965079964787999999999849999999999984247536789629999536775889999999971347
Q ss_pred ---CCCCHHEECCCCHHHHH-------HHHHHCCCCCEEEECHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHCC
Q ss_conf ---77510000347889999-------999731698289972168766542044556---36799999999999753079
Q gi|254780334|r 143 ---INSSVYIAIETNVEDII-------ATLITNEKPDLVIIDSIQTLWSQTAESSPG---TVIQVRTSVQAMIQYAKKNG 209 (479)
Q Consensus 143 ---~~~~i~~~~e~~l~~il-------~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G---svsQvre~~~~L~~~AK~~~ 209 (479)
..+++++....+.++++ ..+.+..+++++|||||+++|..+.++... ...+++.++..|..+|++++
T Consensus 81 ~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia~l~r~e~~~~~~~~~r~~~l~~~~~~L~~lA~~~~ 160 (235)
T cd01123 81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFN 160 (235)
T ss_pred HHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 24542254796379999999999999998730377239999610455566644886447899999999999999999809
Q ss_pred CEEEEEEEECCC--C---------CCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf 789998630366--5---------43311457877530278515556665442156763202567651279985156631
Q gi|254780334|r 210 VAMVLVGHVTKE--G---------QIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQ 278 (479)
Q Consensus 210 i~vilighvTK~--G---------~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~ 278 (479)
+++++++|||.. + .-||++.++|++++.++|+.. ....|+++.+||||+|..++ .|+|++.|+.
T Consensus 161 ~aVvvtNqvt~~~~~~~~~~~~~~~palG~~w~h~v~~rl~l~~~----~~~~R~l~v~ks~~~p~~~~-~f~It~~Gir 235 (235)
T cd01123 161 VAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKG----RGEERIAKIVDSPHLPEGEA-VFAITEEGIR 235 (235)
T ss_pred CEEEEECEEEEECCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEEC----CCCEEEEEEEECCCCCCEEE-EEEEECCCCC
T ss_conf 799996806550676424578864345026678538599999947----99718999986899998179-9998288579
No 8
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.98 E-value=1.3e-32 Score=257.53 Aligned_cols=391 Identities=20% Similarity=0.253 Sum_probs=254.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHH-----------C-CCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHCC-----------
Q ss_conf 3334556663237812488886-----------5-9857870-89995498751889999999998503-----------
Q gi|254780334|r 62 SEESIEEESRIQTHIDELDRVT-----------G-GGFVRGS-VILVGGDPGIGKSTLLMQTAASLAYK----------- 117 (479)
Q Consensus 62 ~~~~~~~~~Ri~TGi~eLDrvL-----------G-GGl~~Gs-~~Li~G~PGvGKSTL~Lqia~~~a~~----------- 117 (479)
=|.+.-..++..--|=|+=.|. - =|=.+|- +.++.||||||||+|+-.||.++-|.
T Consensus 409 LD~DHYGL~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~~D 488 (941)
T TIGR00763 409 LDEDHYGLKKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRD 488 (941)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCEE
T ss_conf 31678888773034135888989998764036444778888767872072695422278999999688049995267220
Q ss_pred -----CCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHH-HHHHHCCCCC---EEEECHHHH-HHHHHHCCC
Q ss_conf -----981999986463047888875201577510000347889999-9997316982---899721687-665420445
Q gi|254780334|r 118 -----KHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDII-ATLITNEKPD---LVIIDSIQT-LWSQTAESS 187 (479)
Q Consensus 118 -----g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il-~~~i~~~~~~---~vVIDSIQt-l~~~~~~s~ 187 (479)
|||=-||.+= +..|-.-..+.+.. +.++++.|.| -+- .. --...|. |=|.|+=|+ -|+.++-.-
T Consensus 489 eAEIrGHRRTYvGAM--PGriiQ~lk~~~t~-NPl~LlDEID--K~~~~~-~~~GDPaSALLEvLDPEQN~~F~DHYldv 562 (941)
T TIGR00763 489 EAEIRGHRRTYVGAM--PGRIIQGLKKAKTK-NPLILLDEID--KIGLKS-SFRGDPASALLEVLDPEQNNAFSDHYLDV 562 (941)
T ss_pred HHHCCCCCCCCCCCC--HHHHHHHHHHCCCC-CCEEEEEEEE--EECCCC-CCCCCHHHHHHHHCCHHHCCCCCCCCCCC
T ss_conf 311278643203467--25789998760415-8806862022--001678-86556378886412864360425530023
Q ss_pred CCCHHHHH--HHH--------------------------HHHHHHHHHCCCEEEEEEEECCCCCCC-CHHHHHHHHHEEE
Q ss_conf 56367999--999--------------------------999997530797899986303665433-1145787753027
Q gi|254780334|r 188 PGTVIQVR--TSV--------------------------QAMIQYAKKNGVAMVLVGHVTKEGQIA-GPRVIEHMVDAVL 238 (479)
Q Consensus 188 ~GsvsQvr--e~~--------------------------~~L~~~AK~~~i~vilighvTK~G~iA-Gp~~LeH~VD~vl 238 (479)
|-.+|+|- .++ .+=..+||++-||-.+--|--|..++- -.-.|..++..+.
T Consensus 563 p~DLS~V~CyFi~TAN~~d~IP~PLLDRMEvI~lsGY~~~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~Yt 642 (941)
T TIGR00763 563 PFDLSKVLCYFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKYYT 642 (941)
T ss_pred CCCHHHHHHHEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHH
T ss_conf 40042002100024475767772213740245238887678999998547136798708881322126899999998751
Q ss_pred EEECCCCCCCCCCEEEEE-----EEE----------------------------------C-----------CCCCCCEE
Q ss_conf 851555666544215676-----320----------------------------------2-----------56765127
Q gi|254780334|r 239 YFEGGTRNTQYDYRILRS-----VKN----------------------------------R-----------FGPTDEIG 268 (479)
Q Consensus 239 ~~ege~~~~~~~~R~Lr~-----~KN----------------------------------R-----------fG~t~e~g 268 (479)
..-|.++-...--.+.|. +++ - --...+.-
T Consensus 643 REaGVRNL~r~I~~i~RK~A~~~~~~~~~~~~P~~~~dp~ea~~~e~~~e~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~ 722 (941)
T TIGR00763 643 REAGVRNLERQIEKICRKAAVKLVEQVKEEEEPAEAADPKEAEGGEKKKERTKKKTSEKSSDQESEKEKSEIQLKKSEKE 722 (941)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32021338999999999999999871463337763477112046665567554656765643345774000100137631
Q ss_pred EEEECCCCCEEECCHHHHHHC-CCC-CCCCCEEEEEEECCCCCCEEEEEEEECCC-----CCCCCEEEEEC----CCHHH
Q ss_conf 998515663110140455511-476-67673489973048974115533101157-----78772477604----68666
Q gi|254780334|r 269 VFEMSDKGLQEVSDPSKIFLS-DRD-STSPGTAVFAGIEGTRALLVEIQSLVVPT-----SLGMPRRTVVG----WDSSR 337 (479)
Q Consensus 269 vf~m~~~Gl~~v~~ps~~fl~-~~~-~~~~Gs~v~~~~eG~r~~lvEvQALv~~~-----~~~~p~R~~~G----~d~~r 337 (479)
-++.+..-|..+-.|..|-.. ..+ .+.||+|.+.+|+-.+.-++-|++.+..+ .-.-|.-..+| +.+.+
T Consensus 723 ~~~i~~~~L~~ylG~p~F~~~E~~~~~~~pGvV~GLAWT~~GG~~L~iEt~~~~gq~Dl~~~kkG~L~lTGqLGDVMKES 802 (941)
T TIGR00763 723 SVEITEDNLKKYLGKPVFTSEERAYETTPPGVVMGLAWTPMGGDTLFIETTKVAGQKDLKGDKKGSLELTGQLGDVMKES 802 (941)
T ss_pred EEEECHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHH
T ss_conf 37854678886528963064545545789856873322324771310447976374034668898667715652599999
Q ss_pred HHHHHHHHHHHC------C----CCCCCCHHHEECCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEE
Q ss_conf 555589887511------1----102462221001456-11154325879999999972488688785999874247316
Q gi|254780334|r 338 LAMILAVLEARC------N----IKFGNHDVHLNIAGG-YRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSV 406 (479)
Q Consensus 338 l~~llAvl~k~~------~----~~~~~~Di~~nv~gG-~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeI 406 (479)
.+..+.+.+.++ . -.|...|||+||++| +++|||||..|||.|++|.+.++|+++++||+|||+|+|.|
T Consensus 803 A~~Alt~~r~~~~~~~i~~~~~l~ff~~~diH~HvPEGAtPKDGPSAG~tm~TaL~Sl~~~~~Vr~~~AMTGE~TLrG~V 882 (941)
T TIGR00763 803 AQIALTYVRSIAEDLGISPPKVLKFFEKADIHLHVPEGATPKDGPSAGITMATALLSLATGKPVRADVAMTGEITLRGKV 882 (941)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCE
T ss_conf 99999999999986188870234253226520213788989886247999999999997087988553551004102356
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECHHHH-HHCC------CCCEEEEEECCHHHHHHHHH
Q ss_conf 3407889999999976998999775765-3228------58808998383999999861
Q gi|254780334|r 407 RAVGHMQQRLKEAEKIGFLSGVFPESAK-GECK------IGMLDRQYIKNLSDLVKKIT 458 (479)
Q Consensus 407 R~V~~i~~ri~eA~~~G~~~~iiP~~n~-~e~~------~~~i~i~~v~~l~e~i~~l~ 458 (479)
.||+|+-.++.+|+|.|.|++|+|+.|. .+.. ..++++++|+++.|++++++
T Consensus 883 LpiGGlKEK~iAA~R~Gik~iilP~~N~e~Dl~elP~~v~e~L~~~~V~~~~ev~~~af 941 (941)
T TIGR00763 883 LPIGGLKEKTIAAKRAGIKTIILPEKNRERDLEELPENVKEGLEIHFVKHYDEVLKKAF 941 (941)
T ss_pred EEECCHHHHHHHHHHHCEEEEECCCHHHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHC
T ss_conf 20050468888853505007774612001526620398872784110032789999829
No 9
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.97 E-value=1.3e-30 Score=242.86 Aligned_cols=375 Identities=19% Similarity=0.307 Sum_probs=243.7
Q ss_pred CCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------------CCCEEEEECCCCHHHH
Q ss_conf 32378124888865-985787089995498751889999999998503----------------9819999864630478
Q gi|254780334|r 71 RIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------------KHRITYVSGEEAIGQI 133 (479)
Q Consensus 71 Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------------g~~vlYvS~EEs~~Qi 133 (479)
.+.--|-|+=.|.- -+=.+|++.++.|+||+|||+|+-.+|.++.+. ||+--|+.+-- ..|
T Consensus 329 ~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgamp--Gri 406 (784)
T PRK10787 329 RVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP--GKL 406 (784)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCC--HHH
T ss_conf 799999999999986246778779964699877246999999985898699806887888882564334344368--389
Q ss_pred HHHHHHCCCCCCCHHEECCCC---------HH-HHHHHHHHC------------CCCC---EEEECHHHHHHHHHHCCCC
Q ss_conf 888752015775100003478---------89-999999731------------6982---8997216876654204455
Q gi|254780334|r 134 RLRAQRLNTINSSVYIAIETN---------VE-DIIATLITN------------EKPD---LVIIDSIQTLWSQTAESSP 188 (479)
Q Consensus 134 ~~Ra~Rl~~~~~~i~~~~e~~---------l~-~il~~~i~~------------~~~~---~vVIDSIQtl~~~~~~s~~ 188 (479)
-.-..+.+.. +.++++.|.| .. .+++ ..+. ...| +++|-.-. .++ .|
T Consensus 407 i~~l~~a~~~-nPv~llDEiDK~~~~~~Gdp~salLE-vLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN-----~~~-ip 478 (784)
T PRK10787 407 IQKMAKVGVK-NPLFLLDEIDKMSSDMRGDPASALLE-VLDPEQNVAFSDHYLEVDYDLSDVMFVATSN-----SMN-IP 478 (784)
T ss_pred HHHHHHHCCC-CCEEEEHHHHHHCCCCCCCHHHHHHH-HCCHHHCCCCCCCEEECCCCHHHEEEEEECC-----CCC-CC
T ss_conf 9999974898-85665003555224558998899998-4597655640003220464522258997327-----677-87
Q ss_pred CCHHHHH--------HHHHHHHHHHHHCCCEEEEEEEECCCCCCC-CHHHHHHHHHEEEEEECCCCCCCCCCEEEEE-EE
Q ss_conf 6367999--------999999997530797899986303665433-1145787753027851555666544215676-32
Q gi|254780334|r 189 GTVIQVR--------TSVQAMIQYAKKNGVAMVLVGHVTKEGQIA-GPRVIEHMVDAVLYFEGGTRNTQYDYRILRS-VK 258 (479)
Q Consensus 189 GsvsQvr--------e~~~~L~~~AK~~~i~vilighvTK~G~iA-Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~-~K 258 (479)
+-. -.| +...+-..+||++-+|-.+-.|--+.+++- ...++.++++.+....|.+.-...-..+.|- .|
T Consensus 479 ~pL-lDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~~~ 557 (784)
T PRK10787 479 APL-LDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVK 557 (784)
T ss_pred HHH-HHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 677-6312155411676788999999745399999828996567439999999875336544425168899999999999
Q ss_pred EC-CCCCCCEEEEEECCCCCEEECCHHHHHHCCC-CCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC----
Q ss_conf 02-5676512799851566311014045551147-66767348997304897411553310115778772477604----
Q gi|254780334|r 259 NR-FGPTDEIGVFEMSDKGLQEVSDPSKIFLSDR-DSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG---- 332 (479)
Q Consensus 259 NR-fG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~-~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G---- 332 (479)
.. .+. ...-+..+...+.++-.|..++.... ..+.+|.|.+.+|+....-++.|+|...+... +-..+|
T Consensus 558 ~~~~~~--~~~~~~i~~~~l~~~lg~~~~~~~~~~~~~~~Gv~~GLawt~~GG~~l~iE~~~~~gkg---~l~lTG~lg~ 632 (784)
T PRK10787 558 QLLLDK--SLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKG---KLTYTGSLGE 632 (784)
T ss_pred HHHCCC--CCCCEEECHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEECCCC---CEEEECCCHH
T ss_conf 997078--87855888999999829987881244136888579999981579768999999816988---6788624068
Q ss_pred CCHHHHHHHHHHHHHHC---CC---CCCCCHHHEECC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCE
Q ss_conf 68666555589887511---11---024622210014-561115432587999999997248868878599987424731
Q gi|254780334|r 333 WDSSRLAMILAVLEARC---NI---KFGNHDVHLNIA-GGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGS 405 (479)
Q Consensus 333 ~d~~rl~~llAvl~k~~---~~---~~~~~Di~~nv~-gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~Ge 405 (479)
+.+.+....+..++.++ ++ .|.++|||+|++ |.+++++||+..++++|++|++.++|++++++|+|||.|.|.
T Consensus 633 vmkES~~~A~s~~r~~~~~~~i~~~~~~~~diHiH~P~Ga~pKDGPSAGit~~tal~S~~~~~~v~~~~amTGEitL~G~ 712 (784)
T PRK10787 633 VMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQ 712 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECEE
T ss_conf 99999999999999989985899430126754895799999898742899999999999869998999655565660202
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC------CCCEEEEEECCHHHHHHHHHCCC
Q ss_conf 634078899999999769989997757653228------58808998383999999861476
Q gi|254780334|r 406 VRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK------IGMLDRQYIKNLSDLVKKITALQ 461 (479)
Q Consensus 406 IR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~------~~~i~i~~v~~l~e~i~~l~~~~ 461 (479)
|.||+|+..++.+|.|.|++++|+|+.|..+.. .++++++.|+++.|+++.-....
T Consensus 713 VlpiGG~keK~laA~r~gi~~vi~P~~N~~d~~~ip~~v~~~l~~~~v~~~~ev~~~al~~~ 774 (784)
T PRK10787 713 VLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNE 774 (784)
T ss_pred EEEECCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHCCCEEEEECCHHHHHHHHHHCC
T ss_conf 78207899999999984998999452123559874999886989999394999999997569
No 10
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=99.97 E-value=9.9e-30 Score=236.44 Aligned_cols=202 Identities=27% Similarity=0.330 Sum_probs=159.2
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHCCCCCCC----
Q ss_conf 23781248888659857870899954987518899999999985-0398199998646304788887520157751----
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQRLNTINSS---- 146 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~---- 146 (479)
++|||++||++||||+++||++||.|+||+|||+|++|++.+.+ +.|++|+|+|+||+.+++..++..++.+.+.
T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~ 80 (231)
T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEEE 80 (231)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHC
T ss_conf 98895568863169982996999985897259999999999999865896899981379999999999829985898646
Q ss_pred --HHEE-------------CCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf --0000-------------34788999---99997316982899721687665420445563679999999999975307
Q gi|254780334|r 147 --VYIA-------------IETNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKN 208 (479)
Q Consensus 147 --i~~~-------------~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~ 208 (479)
+.+. ...+++++ +...+++.+++++||||+.+++.. .+..++|+....|..++|+.
T Consensus 81 g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~------~~~~~~r~~l~~l~~~lk~~ 154 (231)
T pfam06745 81 GKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYL------LKPAMAREILRRLKRVLKKL 154 (231)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHC------CCHHHHHHHHHHHHHHHHHC
T ss_conf 967898625442221001122799999999999999719988999764164005------88999999999999999976
Q ss_pred CCEEEEEEEECCC-CCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEE--EEECCCCCEEEC
Q ss_conf 9789998630366-543311457877530278515556665442156763202567651279--985156631101
Q gi|254780334|r 209 GVAMVLVGHVTKE-GQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGV--FEMSDKGLQEVS 281 (479)
Q Consensus 209 ~i~vilighvTK~-G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv--f~m~~~Gl~~v~ 281 (479)
+++++++.|.+.. +.+.++...++++|+|++|+-+.. .....|.|+..|.| |.....++ |+++++|+.-..
T Consensus 155 g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~-~~~~~R~l~I~K~R-g~~~~~~~~~f~It~~Gi~i~p 228 (231)
T pfam06745 155 GVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEI-EGELVRTIEIVKMR-GTPHSMKRYPFEITDNGIVVYP 228 (231)
T ss_pred CCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECC-CCEEEEEEEEEECC-CCCCCCCEEEEEEECCCEEEEC
T ss_conf 99199998212577765676301110036999998824-99899999999866-9987894799999089879908
No 11
>PRK04328 hypothetical protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=234.88 Aligned_cols=205 Identities=25% Similarity=0.302 Sum_probs=161.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC--
Q ss_conf 663237812488886598578708999549875188999999999850398199998646304788887520157751--
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS-- 146 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~-- 146 (479)
.+|++|||++||++|+||+++||++||.|+||+|||+|++||+.+.+++|++|+|+|+||++.|+..++..+|.+.+.
T Consensus 3 ~eRv~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~~~~l~~~~~~~G~d~~~~~ 82 (250)
T PRK04328 3 VKRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYE 82 (250)
T ss_pred CCEECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHH
T ss_conf 41103585667875159987996999982899998999999999998769977999972799999999998099868986
Q ss_pred ----HHEE-------------------CCCCHHH---HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ----0000-------------------3478899---9999973169828997216876654204455636799999999
Q gi|254780334|r 147 ----VYIA-------------------IETNVED---IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 147 ----i~~~-------------------~e~~l~~---il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~ 200 (479)
+.+. ...+++. .+...+++.+++++||||+.+++... ....|.....
T Consensus 83 ~~g~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~rvVIDSit~l~~~~-------~~~~r~~l~~ 155 (250)
T PRK04328 83 EEGKFAIVDAFTGGIGEAAEREKYVVKDPDDVRELIDVLRQAIRDIGAKRVVIDSVSTLYLTK-------PAVARSIVMQ 155 (250)
T ss_pred HCCCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCC-------HHHHHHHHHH
T ss_conf 569779985123333420000010136853599999999999985189889993707877458-------5889999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCC-CCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCC--EEEEEECCCCC
Q ss_conf 9997530797899986303665-43311457877530278515556665442156763202567651--27998515663
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEG-QIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDE--IGVFEMSDKGL 277 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G-~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e--~gvf~m~~~Gl 277 (479)
|.++.++.+++++++.+++... .+.++ .+||++|.|+.|.-... .....|.|+..|.| |+.+. +--|+++++|+
T Consensus 156 l~~~l~~~g~Ttll~~e~~~~~~~~~~~-~ve~~~DgvI~L~~~~~-~~~~~R~l~I~KmR-gs~h~~~~~~f~It~~GI 232 (250)
T PRK04328 156 LKRVLAGLGCTSIFVSQVSVGERGFGGP-GVEHAVDGIIRLDLDEI-DGELKRSLIVWKMR-GTKHSMRRHPFEITDKGI 232 (250)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCC-CEEEEEEEEEEEEEECC-CCEEEEEEEEEECC-CCCCCCCEEEEEECCCCE
T ss_conf 9999986898699997100365666778-65899989999888713-99799999999886-996589569999879968
Q ss_pred EEECCH
Q ss_conf 110140
Q gi|254780334|r 278 QEVSDP 283 (479)
Q Consensus 278 ~~v~~p 283 (479)
.-.++.
T Consensus 233 ~V~P~~ 238 (250)
T PRK04328 233 VVYPDK 238 (250)
T ss_pred EEECCH
T ss_conf 995441
No 12
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.97 E-value=3.3e-29 Score=232.64 Aligned_cols=207 Identities=27% Similarity=0.364 Sum_probs=164.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHCCCCCCC
Q ss_conf 66632378124888865985787089995498751889999999998503-98199998646304788887520157751
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYVSGEEAIGQIRLRAQRLNTINSS 146 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~ 146 (479)
..+|++|||++||.+|+|||++|+++||.|.||+|||||++||+.+.+++ |++++|+|.||+..++...+..++.+.+.
T Consensus 2 ~ieRi~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~~ 81 (501)
T PRK09302 2 GIEKLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQK 81 (501)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHHH
T ss_conf 97421448711577854898899779998389999999999999999885599789998579999999999984998689
Q ss_pred H------HE------------ECCCCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0------00------------0347889999---9997316982899721687665420445563679999999999975
Q gi|254780334|r 147 V------YI------------AIETNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYA 205 (479)
Q Consensus 147 i------~~------------~~e~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~A 205 (479)
+ .+ ..+.+++.++ ...+++.+|++|||||+..++...- +..+.|....+|..+.
T Consensus 82 ~~~~~~l~i~d~~~~~~~~~~~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~-----~~~~~R~~l~~L~~~l 156 (501)
T PRK09302 82 LIDEGKLFILDASPDPSEQEEAGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYD-----NPAVVRRELFRLFAWL 156 (501)
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCC-----CHHHHHHHHHHHHHHH
T ss_conf 73268389996156743111334476899999999999971999999999789987635-----8789999999999999
Q ss_pred HHCCCEEEEEEEECCC-CCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEE--EEECCCCCEEEC
Q ss_conf 3079789998630366-543311457877530278515556665442156763202567651279--985156631101
Q gi|254780334|r 206 KKNGVAMVLVGHVTKE-GQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGV--FEMSDKGLQEVS 281 (479)
Q Consensus 206 K~~~i~vilighvTK~-G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv--f~m~~~Gl~~v~ 281 (479)
|+.++++++++..+-+ +.+.-..+-|+++|.|++++-.. ......|.|+..|.| |+...-|. |+.+++|+.-..
T Consensus 157 ~~~g~T~llt~E~~~~~~~~~~~g~Ee~vaDGVI~L~~~~-~~~~~~R~L~V~KmR-Gs~~~~g~h~f~It~~Gi~V~P 233 (501)
T PRK09302 157 KQKGVTAVMTGERGDEYGPIARYGVEEFVSDCVVILRNVL-EGEKRTRTLEILKYR-GTTHGKGEYPFTITEDGISVLP 233 (501)
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCHHHHHCCEEEEEEEEC-CCCCCEEEEEEEECC-CCCCCCCCEEEEECCCCEEEEE
T ss_conf 8779779998756666787543452442013078876541-488525899999835-8866687233798799889980
No 13
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.97 E-value=1.2e-28 Score=228.57 Aligned_cols=206 Identities=27% Similarity=0.385 Sum_probs=159.9
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
Q ss_conf 56663237812488886598578708999549875188999999999850398199998646304788887520157751
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS 146 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~ 146 (479)
...+|++||+++||++||||+++||.+||.|+||+|||||++||+.+.+++|++|+|+++||++.|+..||+.+|++-+.
T Consensus 243 ~~~~rv~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~G~dl~~ 322 (501)
T PRK09302 243 SSNERISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSWGIDLEE 322 (501)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHH
T ss_conf 65200047973278872599758946999889998889999999999986599089999967999999999973998488
Q ss_pred ------HHE----ECCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf ------000----034788999---9999731698289972168766542044556367999999999997530797899
Q gi|254780334|r 147 ------VYI----AIETNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMV 213 (479)
Q Consensus 147 ------i~~----~~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vi 213 (479)
+.+ ..+.++++. +...+++.++++|||||+..+... +...+.|....+|..+.|..+++++
T Consensus 323 ~~~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~------~~~~~~r~~l~~L~~~Lk~~gvT~l 396 (501)
T PRK09302 323 MERKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSALARG------GSLNEFRQFVIRLTDYLKQEEITGL 396 (501)
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH------CCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8748947999837000598999999999999729989999580687652------6859999999999999976897899
Q ss_pred EEEEECC--CCCCCCHHHHHHHHHEEE---EEECCCCCCCCCCEEEEEEEECCCCCCCEE--EEEECCCCCEEECCHH
Q ss_conf 9863036--654331145787753027---851555666544215676320256765127--9985156631101404
Q gi|254780334|r 214 LVGHVTK--EGQIAGPRVIEHMVDAVL---YFEGGTRNTQYDYRILRSVKNRFGPTDEIG--VFEMSDKGLQEVSDPS 284 (479)
Q Consensus 214 lighvTK--~G~iAGp~~LeH~VD~vl---~~ege~~~~~~~~R~Lr~~KNRfG~t~e~g--vf~m~~~Gl~~v~~ps 284 (479)
++..... .+....+--+.+++|+|+ |+|. +....|.+.++|.| |+.++-. -|+++++|+. |.+|-
T Consensus 397 ~t~~~~~~~g~~~~t~~~iS~l~D~ii~Lry~E~----~g~l~R~i~VlK~R-~s~h~~~iRe~~It~~Gi~-vg~p~ 468 (501)
T PRK09302 397 FTNLTPDFMGSHSITESHISSLTDTWILLQYVEI----NGEMNRALNVLKMR-GSWHSKQIREFVITDKGIH-IKDPF 468 (501)
T ss_pred EEEECCCCCCCCCCCCCCHHHHCCEEEEEEEEEE----CCEEEEEEEEEEEC-CCCCCCCEEEEEECCCCEE-ECCCC
T ss_conf 9761235567664476660011124789998713----89998989999936-8965775378998799679-74314
No 14
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.8e-30 Score=236.48 Aligned_cols=381 Identities=20% Similarity=0.301 Sum_probs=245.3
Q ss_pred CCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------------CCCEEEEECCCCHH
Q ss_conf 6632378124888865-985787089995498751889999999998503----------------98199998646304
Q gi|254780334|r 69 ESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------------KHRITYVSGEEAIG 131 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------------g~~vlYvS~EEs~~ 131 (479)
.++..--|-|+=.|.- -.=.+|.+.++.||||+|||+|+-.+|.++.+. |||--|+..=- .
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMP--G 405 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMP--G 405 (782)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCC--H
T ss_conf 11689999999999986146788579997899887011899999995897799954765427775355312335687--2
Q ss_pred HHHHHHHHCCCCCCCHHEECCCCH----------HHHH------------HHHHHCCCCC---EEEEC---HHHHHHHHH
Q ss_conf 788887520157751000034788----------9999------------9997316982---89972---168766542
Q gi|254780334|r 132 QIRLRAQRLNTINSSVYIAIETNV----------EDII------------ATLITNEKPD---LVIID---SIQTLWSQT 183 (479)
Q Consensus 132 Qi~~Ra~Rl~~~~~~i~~~~e~~l----------~~il------------~~~i~~~~~~---~vVID---SIQtl~~~~ 183 (479)
.|-.-..+.+.. +.++++.|.|= ..++ ++.++ ..+| +++|- |++++-.+.
T Consensus 406 rIiQ~mkka~~~-NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe-v~yDLS~VmFiaTANsl~tIP~PL 483 (782)
T COG0466 406 KIIQGMKKAGVK-NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE-VPYDLSKVMFIATANSLDTIPAPL 483 (782)
T ss_pred HHHHHHHHHCCC-CCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCC-CCCCHHHEEEEEECCCCCCCCHHH
T ss_conf 899999986776-874786403331677778868888862697656761222016-766443258886037513298678
Q ss_pred HCCCCCCHHH-HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC-CHHHHHHHHHEEEEEECCCCCCCCCCEEEE-EEEE-
Q ss_conf 0445563679-99999999997530797899986303665433-114578775302785155566654421567-6320-
Q gi|254780334|r 184 AESSPGTVIQ-VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIA-GPRVIEHMVDAVLYFEGGTRNTQYDYRILR-SVKN- 259 (479)
Q Consensus 184 ~~s~~GsvsQ-vre~~~~L~~~AK~~~i~vilighvTK~G~iA-Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr-~~KN- 259 (479)
+|-.- +-+ --+...+-..+||++-+|-.+--|--|.+++. ....+.++++.+...-|.+.-...--.+.| ++++
T Consensus 484 lDRME--iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i 561 (782)
T COG0466 484 LDRME--VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKI 561 (782)
T ss_pred HCCEE--EEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43030--5642688869999999984456899975998233556589999999987676210389999999999999999
Q ss_pred CCCCCCCEEEEEECCCCCEEECCHHHHHHCC-CCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC----CC
Q ss_conf 2567651279985156631101404555114-766767348997304897411553310115778772477604----68
Q gi|254780334|r 260 RFGPTDEIGVFEMSDKGLQEVSDPSKIFLSD-RDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG----WD 334 (479)
Q Consensus 260 RfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~-~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G----~d 334 (479)
--+..... |.+++.-|...-.+..+-... ..++.+|.|++.+|+....-++-|+|..+++.... +.+| +.
T Consensus 562 ~~~~~k~~--~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd~L~IE~~~~~Gkg~l---~lTG~LGdVM 636 (782)
T COG0466 562 LLKKEKSI--VKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGDLLTIEAVKMPGKGKL---TLTGSLGDVM 636 (782)
T ss_pred HHCCCCCC--EEECHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCE---EEECCHHHHH
T ss_conf 72575662--442788999973986347531124788705854444247864899988871687507---9960579999
Q ss_pred HHHHHHHHHHHHHHC---CC---CCCCCHHHEECC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEE
Q ss_conf 666555589887511---11---024622210014-56111543258799999999724886887859998742473163
Q gi|254780334|r 335 SSRLAMILAVLEARC---NI---KFGNHDVHLNIA-GGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVR 407 (479)
Q Consensus 335 ~~rl~~llAvl~k~~---~~---~~~~~Di~~nv~-gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR 407 (479)
..+.+..+.+++.++ ++ .|.+.|||+||+ |+.++++|||..+++.||+|++.++|++.+++|+|||.|+|.|.
T Consensus 637 KESa~~A~s~vrs~a~~~~i~~~~fek~dIHiHVPeGAtPKDGPSAGitm~TAlvS~lt~~~V~~~vAMTGEITLrG~VL 716 (782)
T COG0466 637 KESAQAALSYVRSRAEKLGIDPDFFEKRDIHIHVPEGATPKDGPSAGITMATALVSLLTGKPVRADVAMTGEITLRGRVL 716 (782)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEE
T ss_conf 99999999999998987199833333451388789999999886158999999999973999888854124578630246
Q ss_pred EECCHHHHHHHHHHCCCCEEEECHHHHHHCC------CCCEEEEEECCHHHHHHHHHCC
Q ss_conf 4078899999999769989997757653228------5880899838399999986147
Q gi|254780334|r 408 AVGHMQQRLKEAEKIGFLSGVFPESAKGECK------IGMLDRQYIKNLSDLVKKITAL 460 (479)
Q Consensus 408 ~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~------~~~i~i~~v~~l~e~i~~l~~~ 460 (479)
||+|+..++.+|.|.|++.+|+|++|..+.. .+++++++|+++.|++++....
T Consensus 717 pIGGLKEKllAA~R~GIk~viiP~~N~~DleeiP~~vk~~l~i~~V~~~deVlk~al~~ 775 (782)
T COG0466 717 PIGGLKEKLLAAHRGGIKTVIIPKDNERDLEEIPDNVKEGLEIHPVKTIDEVLKLALVG 775 (782)
T ss_pred ECCCHHHHHHHHHHCCCCEEECCCCCCCCHHHCCHHHHCCCEEEEECCHHHHHHHHHCC
T ss_conf 22559899999986598589646545014876779887497499925099999997168
No 15
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.96 E-value=5.3e-29 Score=231.12 Aligned_cols=372 Identities=21% Similarity=0.282 Sum_probs=235.6
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHH---HHHHHHHHCC--CCCEEEEECCC
Q ss_conf 665640313334556663237812488886598578708999549875188999---9999998503--98199998646
Q gi|254780334|r 54 HSISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLL---MQTAASLAYK--KHRITYVSGEE 128 (479)
Q Consensus 54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~---Lqia~~~a~~--g~~vlYvS~EE 128 (479)
..++|...+|+-.++ -||.-|=..|. |=-| +=+.|.||||+|||.=| |.-|-.-... ++.+.||=-.=
T Consensus 57 Ek~RP~SF~EIiGQe-----~GI~ALKAALC-GPNP-QHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDA 129 (532)
T TIGR02902 57 EKTRPKSFDEIIGQE-----EGIKALKAALC-GPNP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDA 129 (532)
T ss_pred CCCCCCCCCCCCCCH-----HHHHHHHHHCC-CCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 466777633256735-----56899998606-8689-6389878869617899999999865087537898866898505
Q ss_pred CHHHHHHH--HH-HCCCCCCCHH---------------------------E------ECCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 30478888--75-2015775100---------------------------0------03478899999997316982899
Q gi|254780334|r 129 AIGQIRLR--AQ-RLNTINSSVY---------------------------I------AIETNVEDIIATLITNEKPDLVI 172 (479)
Q Consensus 129 s~~Qi~~R--a~-Rl~~~~~~i~---------------------------~------~~e~~l~~il~~~i~~~~~~~vV 172 (479)
+--.+..| |+ =+|-.+|.+| + +.+..+..+|+ .+|+ +=|+
T Consensus 130 TT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLK-VLED---RKVF 205 (532)
T TIGR02902 130 TTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLK-VLED---RKVF 205 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH-HHHC---CCCH
T ss_conf 10360214666656776158533376545788557587776320258655121246658243531411-3302---2200
Q ss_pred ECHHHHHHHHHHCCCCCCHHHHHHHHH---------------------------------------HHHHHHHHCCCEEE
Q ss_conf 721687665420445563679999999---------------------------------------99997530797899
Q gi|254780334|r 173 IDSIQTLWSQTAESSPGTVIQVRTSVQ---------------------------------------AMIQYAKKNGVAMV 213 (479)
Q Consensus 173 IDSIQtl~~~~~~s~~GsvsQvre~~~---------------------------------------~L~~~AK~~~i~vi 213 (479)
+|| +.|+++-+.-| +-+|++.+ ++...||..
T Consensus 206 LdS--AYY~s~~pniP---~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~iAk~A----- 275 (532)
T TIGR02902 206 LDS--AYYSSEDPNIP---SHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEIAKNA----- 275 (532)
T ss_pred HHC--CCCCCCCCCCC---HHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHH-----
T ss_conf 001--23587778654---27899720678734012133369877678346505226771688878999998765-----
Q ss_pred EEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCC--CCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCC
Q ss_conf 9863036654331145787753027851555666--54421567632025676512799851566311014045551147
Q gi|254780334|r 214 LVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNT--QYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDR 291 (479)
Q Consensus 214 lighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~--~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~ 291 (479)
+-|=|.--++..|+-+.... -.|+..-+ +-..-++ ..-||--.+.+==.|-....-+.+ .++.=++
T Consensus 276 ----aeKIg~~l~~~Al~~I~~Ya--~nGREAvN~~QLAaG~a-~~E~Rk~I~~~DieWV~~~G~y~P---k~~~k~~-- 343 (532)
T TIGR02902 276 ----AEKIGLNLEKEALDLIAKYA--SNGREAVNLVQLAAGIA-LGENRKRILAEDIEWVIESGNYHP---KPEIKLS-- 343 (532)
T ss_pred ----HHHCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHE-ECCCCCEECHHHHHHHHHHCCCCC---CCCEEEC--
T ss_conf ----65304654754799999874--05406778999973140-128876120546445553047877---4340207--
Q ss_pred CCCCCCEEEEEEECCCC-CCEEEEEEEECCCCCCC-CEEEEECCC------------------HHHHHHHHHHHHHHCCC
Q ss_conf 66767348997304897-41155331011577877-247760468------------------66655558988751111
Q gi|254780334|r 292 DSTSPGTAVFAGIEGTR-ALLVEIQSLVVPTSLGM-PRRTVVGWD------------------SSRLAMILAVLEARCNI 351 (479)
Q Consensus 292 ~~~~~Gs~v~~~~eG~r-~~lvEvQALv~~~~~~~-p~R~~~G~d------------------~~rl~~llAvl~k~~~~ 351 (479)
.++..|+|-+.+..|.. ..++||++++.+..... .+=.++|+- +-.+.-.+|||+...++
T Consensus 344 ~~P~iG~VNGLaV~Gpn~G~vl~~E~~a~~a~~~~qG~i~vtGIiEEE~~gg~~~~~~rKS~a~gSvENV~~Vl~~~~~i 423 (532)
T TIGR02902 344 SEPQIGLVNGLAVYGPNSGAVLEVEVTAERAENKRQGSINVTGIIEEEEIGGSGKSVRRKSSAKGSVENVLAVLKSVFNI 423 (532)
T ss_pred CCCCEEEEECCEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88853566554460677551302343776601148842899888710001798961520022443088999999988478
Q ss_pred CCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECH
Q ss_conf 02462221001456111543258799999999724886887859998742473163407889999999976998999775
Q gi|254780334|r 352 KFGNHDVHLNIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPE 431 (479)
Q Consensus 352 ~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~ 431 (479)
++.|||||+|++||+.+|+|||.+|||+||+||+..+|+++.++|+|||+|.|.|+||+|+.+++.+|+|.|.|+||||+
T Consensus 424 ~p~~YDIHiNFpGG~PvDGPSAG~aiA~aiySA~~~~PIdn~vAmTGEISL~G~VKPVGGV~~Ki~AA~~AGak~ViIP~ 503 (532)
T TIGR02902 424 NPKDYDIHINFPGGIPVDGPSAGVAIAVAIYSAIKKVPIDNKVAMTGEISLNGLVKPVGGVVSKIEAAKKAGAKKVIIPY 503 (532)
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHCCCCEEECCC
T ss_conf 82126478854878842260089999999999871788877211133386401052017861268999974972653475
Q ss_pred HHHHHCC--CCCEEEEEECCHHHHHHHHH
Q ss_conf 7653228--58808998383999999861
Q gi|254780334|r 432 SAKGECK--IGMLDRQYIKNLSDLVKKIT 458 (479)
Q Consensus 432 ~n~~e~~--~~~i~i~~v~~l~e~i~~l~ 458 (479)
+|.++.- +++|+|++|++++|+++++.
T Consensus 504 eNwqe~~~~~~~I~vipVk~~~E~l~~~l 532 (532)
T TIGR02902 504 ENWQESFESISGIKVIPVKNIDEVLEVAL 532 (532)
T ss_pred CHHHHHHHHHCCEEEEECCCHHHHHHHHC
T ss_conf 20789998552715863263899998839
No 16
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.96 E-value=3.5e-28 Score=225.19 Aligned_cols=188 Identities=23% Similarity=0.392 Sum_probs=166.4
Q ss_pred EEECCCCCEEECCHHHHHHCC----CCCCCCCEEEEEEECCCCCCEEEEEEEECCCCC---CCCEE--EEECCCHHHHHH
Q ss_conf 985156631101404555114----766767348997304897411553310115778---77247--760468666555
Q gi|254780334|r 270 FEMSDKGLQEVSDPSKIFLSD----RDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSL---GMPRR--TVVGWDSSRLAM 340 (479)
Q Consensus 270 f~m~~~Gl~~v~~ps~~fl~~----~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~---~~p~R--~~~G~d~~rl~~ 340 (479)
.+.+.+.+.+|-+-|.+---+ .++.-.|-+-+...-|==.=.+||+|.+=+... |.-|. |+.-..++++=.
T Consensus 417 ~~I~~~dv~evv~~sRl~Py~~~~~~~~~EvG~vFGLGV~gy~GS~lEIEa~aF~A~~~GkG~~RfNdTAGSMaKDSvFN 496 (616)
T TIGR02903 417 VTITADDVKEVVQISRLSPYEKVKASDTYEVGHVFGLGVSGYLGSVLEIEAVAFEAKEKGKGTVRFNDTAGSMAKDSVFN 496 (616)
T ss_pred EEEEHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 26618677767753045750112468886304687042121002333555044237789950588615655303577898
Q ss_pred HHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHH
Q ss_conf 58988751111024622210014561115432587999999997248868878599987424731634078899999999
Q gi|254780334|r 341 ILAVLEARCNIKFGNHDVHLNIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAE 420 (479)
Q Consensus 341 llAvl~k~~~~~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~ 420 (479)
.++|++|-.+.++.||||||||.||-+||+|||.-||.++|+||+.++|+.||++++|||||.|.||||+|+-.+|--|+
T Consensus 497 AasviRk~T~~D~~~yD~HVNViGGG~IDGPSAG~Ai~~~~~SA~~~~p~rQDvAiTGEiS~~G~ikpVGGi~EKIYGAk 576 (616)
T TIGR02903 497 AASVIRKITGKDLKDYDIHVNVIGGGRIDGPSAGAAITLCIISAILDKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAK 576 (616)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECEEEECCCCCCCCHHHH
T ss_conf 89998653046834165178885277017532579999999998708983022565103886021651266333321455
Q ss_pred HCCCCEEEECHHHHHHCC--CCCEEEEEECCHHHHHHHH
Q ss_conf 769989997757653228--5880899838399999986
Q gi|254780334|r 421 KIGFLSGVFPESAKGECK--IGMLDRQYIKNLSDLVKKI 457 (479)
Q Consensus 421 ~~G~~~~iiP~~n~~e~~--~~~i~i~~v~~l~e~i~~l 457 (479)
+.|++.|+||++|.+++. ..+|+|..|+|+.|+++..
T Consensus 577 ~~gi~~V~~P~~N~kdvPqg~~~I~v~~v~~iEE~~~iv 615 (616)
T TIGR02903 577 RAGIKTVVIPEDNLKDVPQGLKGIEVKAVKTIEELLEIV 615 (616)
T ss_pred HCCCCEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 347435436730021356678871589705189899860
No 17
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.94 E-value=3.1e-25 Score=203.68 Aligned_cols=206 Identities=22% Similarity=0.283 Sum_probs=148.2
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 45566632378124888865985787089995498751889999999998503981999986463047888875201577
Q gi|254780334|r 65 SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTIN 144 (479)
Q Consensus 65 ~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~ 144 (479)
..++.+|++|||++||++||||+++|+++||.|+||+|||+|++|++.+.+++|++|+|+++||+..++..++..++.+.
T Consensus 7 ~~~~~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl 86 (241)
T PRK06067 7 GEEEKEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDI 86 (241)
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCH
T ss_conf 54314525668755786506997799089998079988799999999999867982999994289999999999839985
Q ss_pred CCHH------EE---------CCCCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5100------00---------347889999---99973169828997216876654204455636799999999999753
Q gi|254780334|r 145 SSVY------IA---------IETNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAK 206 (479)
Q Consensus 145 ~~i~------~~---------~e~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK 206 (479)
...+ +. ....++.++ ...+++.+++++||||+..+... ....++++....|..++
T Consensus 87 ~~~~~~G~L~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls~l~~~------~~~~~~~~~l~~l~~l~- 159 (241)
T PRK06067 87 SDFFIWGYLRIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLTIFATY------ASEDDVLNFFTECKNLC- 159 (241)
T ss_pred HHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCC------CCHHHHHHHHHHHHHHH-
T ss_conf 99986697057832411134215568999999999999719989999280175413------88899999999999999-
Q ss_pred HCCCEEEEEEEECC-CCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEE---EEEECCC-CCEEEC
Q ss_conf 07978999863036-654331145787753027851555666544215676320256765127---9985156-631101
Q gi|254780334|r 207 KNGVAMVLVGHVTK-EGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIG---VFEMSDK-GLQEVS 281 (479)
Q Consensus 207 ~~~i~vilighvTK-~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~g---vf~m~~~-Gl~~v~ 281 (479)
+++.+++++-|-.- ..... ..+++++|+|+.|.-... .+...|.|+..|-| |+.+..| -|+.... |+.-++
T Consensus 160 ~~g~tvllt~~~~~~~~~~~--~~i~~vaD~vI~Lr~~~~-~g~~~R~L~V~K~R-Gs~h~~g~~i~F~I~~g~GI~v~P 235 (241)
T PRK06067 160 DNGKTILITLHPYAFSEDTL--VRIRSICDVHLKLRKEQV-GDRYVKVLEVVKLR-GARKTTGNIISFDVDPGFGIKIIP 235 (241)
T ss_pred HCCCEEEEEECCCCCCCCCC--CCEEEEEEEEEEEEEEEE-CCEEEEEEEEEEEC-CCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 68988999905676476643--124899899999587843-99999999999915-998998888889983898759986
No 18
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.94 E-value=2.1e-25 Score=204.91 Aligned_cols=150 Identities=25% Similarity=0.348 Sum_probs=130.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC--CCCCCHHEECCCCHHH-------HHHHH
Q ss_conf 89995498751889999999998503981999986463047888875201--5775100003478899-------99999
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLN--TINSSVYIAIETNVED-------IIATL 162 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~--~~~~~i~~~~e~~l~~-------il~~~ 162 (479)
++||.|+||+|||||++|++.+.++++.+|+|+++||+..|+..|+.++. ...++.++...++.+. ..+..
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98999899998999999999998763997999986664489999999862246713079993599976999999999999
Q ss_pred HHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-----CCCCCHHHHHHHHHEE
Q ss_conf 73169828997216876654204455636799999999999753079789998630366-----5433114578775302
Q gi|254780334|r 163 ITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE-----GQIAGPRVIEHMVDAV 237 (479)
Q Consensus 163 i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~-----G~iAGp~~LeH~VD~v 237 (479)
.++.+++++||||||+++.+..++.+|++.|+++|+.+|..+||+.++++|+++|++++ +..+||+.|+|++|++
T Consensus 81 ~~~~~~vliiiDSit~~~~a~~e~~~g~~~~v~~~~~~L~~~Ak~~~itvi~i~~v~~d~~~~~~~~~g~~~l~~~~d~~ 160 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTV 160 (165)
T ss_pred HHCCCCEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHCCEE
T ss_conf 98699779999288998877400158867899999999999997798289999984337789977253888883642669
Q ss_pred EEEE
Q ss_conf 7851
Q gi|254780334|r 238 LYFE 241 (479)
Q Consensus 238 l~~e 241 (479)
+|++
T Consensus 161 i~L~ 164 (165)
T cd01120 161 IVLS 164 (165)
T ss_pred EEEE
T ss_conf 9983
No 19
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=99.93 E-value=3.6e-24 Score=195.89 Aligned_cols=210 Identities=23% Similarity=0.342 Sum_probs=163.2
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH------CCCCCEEEEECCCC--HHHHHHHH
Q ss_conf 55666323781248888659857870899954987518899999999985------03981999986463--04788887
Q gi|254780334|r 66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA------YKKHRITYVSGEEA--IGQIRLRA 137 (479)
Q Consensus 66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a------~~g~~vlYvS~EEs--~~Qi~~Ra 137 (479)
.....||+||.+.||++||||+++|+++.|.|+||+|||+||+|+|.++. ..+++|+||+.|-+ ++.+..-|
T Consensus 19 r~~~~~isTg~~~LD~lLgGGi~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~~eRl~qia 98 (261)
T pfam08423 19 RSEVIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERIVAIA 98 (261)
T ss_pred HCCCCEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 54873577898789987379866772999989988878999999999940709656999728999368886989999999
Q ss_pred HHCCCCC----CCHHEECCCCHHHHHH------HHHHCCCCCEEEECHHHHHHHHHHCCCCCCH----HHHHHHHHHHHH
Q ss_conf 5201577----5100003478899999------9973169828997216876654204455636----799999999999
Q gi|254780334|r 138 QRLNTIN----SSVYIAIETNVEDIIA------TLITNEKPDLVIIDSIQTLWSQTAESSPGTV----IQVRTSVQAMIQ 203 (479)
Q Consensus 138 ~Rl~~~~----~~i~~~~e~~l~~il~------~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv----sQvre~~~~L~~ 203 (479)
++.+.+. +++++....+.++... ..+.+.+.+++||||+..+|..++.+. +.. ..+...+..|..
T Consensus 99 ~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~~~~~~~~~~v~LvVvDSiaalfR~e~~g~-~~l~~R~~~L~~~l~~L~~ 177 (261)
T pfam08423 99 ERFGLDPEEVLDNIAYARAYNTEHQMQLLLQAAAMMSESRFALLIVDSATALYRTDFSGR-GELAERQQHLAKFLRSLQR 177 (261)
T ss_pred HHHCCCHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHH
T ss_conf 982999789875331416899899999999999987317834999832400233300367-5289999999999999999
Q ss_pred HHHHCCCEEEEEEEECCC-C---C-------CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEE
Q ss_conf 753079789998630366-5---4-------3311457877530278515556665442156763202567651279985
Q gi|254780334|r 204 YAKKNGVAMVLVGHVTKE-G---Q-------IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEM 272 (479)
Q Consensus 204 ~AK~~~i~vilighvTK~-G---~-------iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m 272 (479)
+|.+++++|+++.||+.+ + . -+|-..+.|.+-+-++++- .....|+.+.+|.+.-|-.+. .|..
T Consensus 178 lA~~~~~aVvvTNQV~~~~~~~~~f~~~~~~PagG~~~~h~~~~Rl~L~k----~~g~~R~~~l~ksp~~pe~~~-~F~I 252 (261)
T pfam08423 178 LADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGHIMAHASTTRLYLRK----GRGEQRVCKIYDSPCLPESEA-VFAI 252 (261)
T ss_pred HHHHCCCEEEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHCEEEEEEEE----CCCCEEEEEEEECCCCCCCEE-EEEE
T ss_conf 99980958999604798528863013787757505777734208999996----699847999987899998648-9999
Q ss_pred CCCCCEEEC
Q ss_conf 156631101
Q gi|254780334|r 273 SDKGLQEVS 281 (479)
Q Consensus 273 ~~~Gl~~v~ 281 (479)
++.|+..+.
T Consensus 253 t~~GI~D~~ 261 (261)
T pfam08423 253 SEGGIGDAK 261 (261)
T ss_pred ECCCCCCCC
T ss_conf 389712688
No 20
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.93 E-value=4.5e-24 Score=195.15 Aligned_cols=190 Identities=21% Similarity=0.329 Sum_probs=143.9
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC----------
Q ss_conf 248888659857870899954987518899999999985-03981999986463047888875--20157----------
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI---------- 143 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~---------- 143 (479)
.|||+++ ||+.||.+++|+|.||+|||||++|++.+++ +.|.+|+|+|.|++..++..|.- ..+++
T Consensus 1 ~eLD~~~-gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~~~~~R~~s~~~~i~~~~i~~~~~~ 79 (242)
T cd00984 1 TDLDNLT-GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLS 79 (242)
T ss_pred CCHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 9523431-699998189999689999999999999999997799599993335388999999999829774553026522
Q ss_pred ---------------CCCHHEEC--CCCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf ---------------75100003--47889999---99973169828997216876654204455636799999999999
Q gi|254780334|r 144 ---------------NSSVYIAI--ETNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQ 203 (479)
Q Consensus 144 ---------------~~~i~~~~--e~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~ 203 (479)
..++++.. ..+++++. ..+....+++++|||++|.+..+... -....++.+++..|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~~~~vvvDylql~~~~~~~--~~~~~~i~~i~~~Lk~ 157 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKK--GNRQQEVAEISRSLKL 157 (242)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCC--CCHHHHHHHHHHHHHH
T ss_conf 79999999999986169889966999999999999999988369989998269854677766--5799999999999999
Q ss_pred HHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC----CCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 7530797899986303665-----------4331145787753027851555----666544215676320256765127
Q gi|254780334|r 204 YAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT----RNTQYDYRILRSVKNRFGPTDEIG 268 (479)
Q Consensus 204 ~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~----~~~~~~~R~Lr~~KNRfG~t~e~g 268 (479)
+||+.+++++++.|++++. .+.|+..+|+..|+|+.+.-+. .+.......|++.|||+|+++.+-
T Consensus 158 lA~e~~v~Vi~~sQlnR~~~~~~~~~p~l~dl~~S~~ieq~AD~vl~l~R~~~~~~~~~~~~~~~l~v~KnR~G~~G~v~ 237 (242)
T cd00984 158 LAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTGTVE 237 (242)
T ss_pred HHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEE
T ss_conf 99997993999846786612278988660122332000201749999851434576577898489999816899985499
Q ss_pred E
Q ss_conf 9
Q gi|254780334|r 269 V 269 (479)
Q Consensus 269 v 269 (479)
+
T Consensus 238 l 238 (242)
T cd00984 238 L 238 (242)
T ss_pred E
T ss_conf 9
No 21
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.93 E-value=1.9e-23 Score=190.57 Aligned_cols=204 Identities=21% Similarity=0.346 Sum_probs=152.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHC--CCC-
Q ss_conf 6663237812488886598578708999549875188999999999850-398199998646304788887520--157-
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY-KKHRITYVSGEEAIGQIRLRAQRL--NTI- 143 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-~g~~vlYvS~EEs~~Qi~~Ra~Rl--~~~- 143 (479)
+..-+.+++++||+.+ ||+.+|.+++|+|.||+|||+|++|++.+++. .|.+|+|+|.|++..|+..|.-.. +..
T Consensus 9 ~~~~~~~pf~~LD~~~-~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g~~~ 87 (271)
T cd01122 9 SNEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRL 87 (271)
T ss_pred CCCCCCCCCHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCH
T ss_conf 7556658816688873-799998089999689986999999999999997699089997049999999999999829971
Q ss_pred -----------------------CCCHHEEC---CCCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf -----------------------75100003---4788999---999973169828997216876654204455636799
Q gi|254780334|r 144 -----------------------NSSVYIAI---ETNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 144 -----------------------~~~i~~~~---e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
..++++.. ...++.+ +.......+++++|||++|.+.+..... .....++
T Consensus 88 ~~~~~~~~~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~~~~~~-~d~~~~i 166 (271)
T cd01122 88 HLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERAS-GDERKAL 166 (271)
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCC-CCHHHHH
T ss_conf 103446778099999999997079980887899998899999999999982899889983178503678677-3189999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC--------------CCCCHHHHHHHHHEEEEEECC--CCCCCCCCEEEEEEE
Q ss_conf 9999999997530797899986303665--------------433114578775302785155--566654421567632
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG--------------QIAGPRVIEHMVDAVLYFEGG--TRNTQYDYRILRSVK 258 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G--------------~iAGp~~LeH~VD~vl~~ege--~~~~~~~~R~Lr~~K 258 (479)
.+++..|..+||+++|+++++.|++++. .+.|+..+|-..|.|+.+.-+ ..+.....+.|+..|
T Consensus 167 ~~i~~~Lk~lAke~~v~Vi~lsQlnR~~~~~~~~~~~~~~lsDlrgSg~ieq~AD~vi~l~R~~~~~~~~~~~~~l~v~K 246 (271)
T cd01122 167 DEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERNTTYLRILK 246 (271)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEEE
T ss_conf 99999999999997997799952676535556566877566661243012532879999975576666789828999993
Q ss_pred ECC-CCCCCEEEEEEC
Q ss_conf 025-676512799851
Q gi|254780334|r 259 NRF-GPTDEIGVFEMS 273 (479)
Q Consensus 259 NRf-G~t~e~gvf~m~ 273 (479)
||| |.|+..+-|.+.
T Consensus 247 nR~~G~tG~~~~l~y~ 262 (271)
T cd01122 247 NRFTGGTGVAGPLEYD 262 (271)
T ss_pred CCCCCCCCCEEEEEEE
T ss_conf 6898999888988996
No 22
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.92 E-value=8.1e-24 Score=193.31 Aligned_cols=198 Identities=24% Similarity=0.357 Sum_probs=144.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC-
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--20157-
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI- 143 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~- 143 (479)
...-++||++.||+++ |||.||.+++|+|+||+|||+|++++|.+++ +.|.+|+|+|.|+|..|+..|.- ..+++
T Consensus 173 ~~~Gi~TG~~~LD~~~-~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~s~i~~ 251 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLT-NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINT 251 (421)
T ss_pred CCCCCCCCCHHHHHHH-CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCH
T ss_conf 8677878807899983-699988689998546787459999999999986698389992579999999999998548977
Q ss_pred ------------------------CCCHHEECC--CCHHHHHH---HHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ------------------------751000034--78899999---9973-16982899721687665420445563679
Q gi|254780334|r 144 ------------------------NSSVYIAIE--TNVEDIIA---TLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 144 ------------------------~~~i~~~~e--~~l~~il~---~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
..++++... .++.++.. .+.. ..+++++|||++|.+..+. ......+
T Consensus 252 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livIDYLqLi~~~~---~~~r~~e 328 (421)
T TIGR03600 252 GNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR---GRDRNEE 328 (421)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCC---CCCHHHH
T ss_conf 6665289998999999999998616878996699887678999999999862898699975786537888---8888999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCHHHHHHHHHEEEEEECCC----CCCCCCCEEEEEEE
Q ss_conf 999999999975307978999863036654-----------331145787753027851555----66654421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQ-----------IAGPRVIEHMVDAVLYFEGGT----RNTQYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~-----------iAGp~~LeH~VD~vl~~ege~----~~~~~~~R~Lr~~K 258 (479)
+.+++..|+.+||+.+||+++..|++.+.+ +..+-.+|...|.|+.+--+. .+.....--+-+.|
T Consensus 329 i~~Isr~LK~lAkel~ipVi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV~fl~R~~~y~~~~~~~~~~e~ivaK 408 (421)
T TIGR03600 329 LGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAGVAELILAK 408 (421)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEE
T ss_conf 99999999999999799789970578652336888865434443357420474899961333347888888838999981
Q ss_pred ECCCCCCCEEE
Q ss_conf 02567651279
Q gi|254780334|r 259 NRFGPTDEIGV 269 (479)
Q Consensus 259 NRfG~t~e~gv 269 (479)
||+|+++.+-+
T Consensus 409 nRnG~~G~v~l 419 (421)
T TIGR03600 409 NRHGPTGTVEL 419 (421)
T ss_pred CCCCCCCEEEE
T ss_conf 47899843875
No 23
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.92 E-value=2.5e-23 Score=189.77 Aligned_cols=193 Identities=25% Similarity=0.352 Sum_probs=145.6
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC------CCEEEEECCCCHHHHHHHHHHCCCC--
Q ss_conf 23781248888659857870899954987518899999999985039------8199998646304788887520157--
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK------HRITYVSGEEAIGQIRLRAQRLNTI-- 143 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g------~~vlYvS~EEs~~Qi~~Ra~Rl~~~-- 143 (479)
++||+..||.+||||++.|.+++|.|+||+|||+||||++.+.+..+ ++|+|++.|.+.. ..|+++++..
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~--~~rl~~i~~~~~ 78 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFR--PERLVQLAVRFG 78 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC--HHHHHHHHHHHC
T ss_conf 988747899885799888839999999999899999999999854221169996199995577531--999999987603
Q ss_pred ------CCCHHEECCCCHHHHHHH------HHHCCCCCEEEECHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHC
Q ss_conf ------751000034788999999------973169828997216876654204455636---79999999999975307
Q gi|254780334|r 144 ------NSSVYIAIETNVEDIIAT------LITNEKPDLVIIDSIQTLWSQTAESSPGTV---IQVRTSVQAMIQYAKKN 208 (479)
Q Consensus 144 ------~~~i~~~~e~~l~~il~~------~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv---sQvre~~~~L~~~AK~~ 208 (479)
.+++++....+.+++++. .+++.+++++|||||.+++..+........ ..+......|..+|.++
T Consensus 79 ~~~~~~l~~i~~~~~~~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~ 158 (226)
T cd01393 79 LDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKF 158 (226)
T ss_pred CCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 26677643336843799999999999999875247842899932200111444276207899999999999999999984
Q ss_pred CCEEEEEEEEC-CCCC-------CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 97899986303-6654-------33114578775302785155566654421567632025676512
Q gi|254780334|r 209 GVAMVLVGHVT-KEGQ-------IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEI 267 (479)
Q Consensus 209 ~i~vilighvT-K~G~-------iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~ 267 (479)
+++++++.||+ +-+. -+|-+.++|.+.+-++++-. ......-|+++.+||+..|-.+.
T Consensus 159 ~~avv~tNQv~~~i~~~~~~~~~p~gG~~w~~~~~~Ri~l~k~-~~~~~~~r~~~~~k~p~~p~~~~ 224 (226)
T cd01393 159 NVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKG-RGIIGERRIAKVVKSPALPEAEA 224 (226)
T ss_pred CCEEEEECEEEECCCCCCCCCCCCCCHHHHHHHCEEEEEEEEC-CCCCCCEEEEEEEECCCCCCCCC
T ss_conf 9799996811781578789988787636646002699999966-88878879999998989987668
No 24
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.92 E-value=7.6e-23 Score=186.20 Aligned_cols=207 Identities=23% Similarity=0.370 Sum_probs=160.4
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCCC--HHHHHHHHH
Q ss_conf 566632378124888865985787089995498751889999999998503------981999986463--047888875
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK------KHRITYVSGEEA--IGQIRLRAQ 138 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~------g~~vlYvS~EEs--~~Qi~~Ra~ 138 (479)
....||+||.+.||.+||||+..|++|.+.|+||+|||+||+|+|.+.... +.+|+||+.|-+ ++.+..-|+
T Consensus 80 ~~~~~isTg~~~lD~lLgGGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qia~ 159 (318)
T PRK04301 80 KSIGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQMAE 159 (318)
T ss_pred HCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 34782478887888054798336707888668878703566776765337677789886379995689869799999999
Q ss_pred HCCCCC----CCHHEECCCCHHHHH------HHHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH----HHHHHHHHHH
Q ss_conf 201577----510000347889999------99973-16982899721687665420445563679----9999999999
Q gi|254780334|r 139 RLNTIN----SSVYIAIETNVEDII------ATLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ----VRTSVQAMIQ 203 (479)
Q Consensus 139 Rl~~~~----~~i~~~~e~~l~~il------~~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ----vre~~~~L~~ 203 (479)
+++.+. +++++....+.++.. ...+. ..+.+++||||+.++|..++.+. |..++ +....+.|.+
T Consensus 160 ~~g~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alfR~e~~gr-g~l~~Rq~~L~~~l~~L~~ 238 (318)
T PRK04301 160 GLGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLR 238 (318)
T ss_pred HHCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHEEECCCCC-CCHHHHHHHHHHHHHHHHH
T ss_conf 849997898640268613998999999999999996278804999943423212104685-3099999999999999999
Q ss_pred HHHHCCCEEEEEEEECCC-CC-------CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC
Q ss_conf 753079789998630366-54-------3311457877530278515556665442156763202567651279985156
Q gi|254780334|r 204 YAKKNGVAMVLVGHVTKE-GQ-------IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDK 275 (479)
Q Consensus 204 ~AK~~~i~vilighvTK~-G~-------iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~ 275 (479)
+|+++|++|+++.||+.+ +. -+|-..+.|.+-+-++|.- .....|+.+.+|.+.=|..|. .|..++.
T Consensus 239 lA~~~niaVvvTNQV~~~~~~~~g~~~~P~gG~~~ah~~t~Rl~Lrk----~~g~~R~~~l~~SP~lPe~~~-~F~It~~ 313 (318)
T PRK04301 239 LADLYNAAVVVTNQVMARPDAFFGDPTKPIGGHILGHTATFRIYLRK----SKGDKRIARLVDSPHLPEGEA-VFRITEE 313 (318)
T ss_pred HHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEE----CCCCEEEEEEEECCCCCCEEE-EEEECCC
T ss_conf 99985957999613675476556887635662140301518999997----689879999977889997278-9998488
Q ss_pred CCEE
Q ss_conf 6311
Q gi|254780334|r 276 GLQE 279 (479)
Q Consensus 276 Gl~~ 279 (479)
|+..
T Consensus 314 GI~D 317 (318)
T PRK04301 314 GIRD 317 (318)
T ss_pred CCCC
T ss_conf 6379
No 25
>PRK07004 replicative DNA helicase; Provisional
Probab=99.91 E-value=8.9e-23 Score=185.71 Aligned_cols=200 Identities=20% Similarity=0.270 Sum_probs=145.3
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCC--
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--2015--
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNT-- 142 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~-- 142 (479)
+..-++||+..||+++ |||.||.+++|+|+||+|||+|+|++|.+++ +.|.+|+|+|.|+|..|+..|.- .-++
T Consensus 192 ~~~Gi~TGf~~LD~~t-~Gl~~gdLiIIAARPsmGKTafAlniA~n~A~~~g~~V~~FSLEMs~eql~~Rlls~~s~I~~ 270 (460)
T PRK07004 192 DVTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQ 270 (460)
T ss_pred CCCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 9853867938898652-389877579997368764269999999999872588669984779999999999986069882
Q ss_pred -----------------------CCCCHHEECCC--CHHHHHH---HHHHC-CCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf -----------------------77510000347--8899999---99731-6982899721687665420445563679
Q gi|254780334|r 143 -----------------------INSSVYIAIET--NVEDIIA---TLITN-EKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 143 -----------------------~~~~i~~~~e~--~l~~il~---~~i~~-~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
...++|+.... ++.++.. .+..+ .+.+++|||++|-|..+. .......|
T Consensus 271 ~~ir~g~l~~~e~~~i~~a~~~l~~~~l~IdD~~~lt~~~ira~~Rr~~~~~g~l~lvviDYlqli~~~~--~~~~r~~e 348 (460)
T PRK07004 271 HRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS--QGENRATE 348 (460)
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCC--CCCCHHHH
T ss_conf 1100788999999999999999855974896898730789999999999743588899850775447888--88889999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-C---CCCCCCEEEEEEE
Q ss_conf 99999999997530797899986303665-----------4331145787753027851555-6---6654421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-R---NTQYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~---~~~~~~R~Lr~~K 258 (479)
+.+++..|+.+||+.+|||++..|++..- .+-.+-.+|-..|+|+.+.-+. + ..+...--+-..|
T Consensus 349 i~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~dkrP~lsDLReSGsIEQDADvV~fL~r~~~y~~~~~~~~~~e~ivaK 428 (460)
T PRK07004 349 ISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGK 428 (460)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEC
T ss_conf 99999999999999699789970468431227899875423202332032077899975410158998888816999973
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
||+|+++.+-+.
T Consensus 429 ~R~G~~g~v~l~ 440 (460)
T PRK07004 429 QRNGPIGPVRLT 440 (460)
T ss_pred CCCCCCEEEEEE
T ss_conf 688996069999
No 26
>PRK06749 replicative DNA helicase; Provisional
Probab=99.91 E-value=2.3e-22 Score=182.71 Aligned_cols=202 Identities=19% Similarity=0.277 Sum_probs=146.8
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH--------
Q ss_conf 566632378124888865985787089995498751889999999998503981999986463047888875--------
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ-------- 138 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~-------- 138 (479)
.+..-++||+..||+++ |||.||.++.|+|+||+|||+|++++|.++++.|.+|+|+|.|+|.+|+..|.-
T Consensus 164 ~~~~Gi~TGf~~LD~lt-~Gl~~g~LiviaaRPsmGKTa~alnia~~~a~~g~~v~~fSlEMs~~~l~~R~ls~~s~v~~ 242 (428)
T PRK06749 164 KEITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRMASCVGEVSG 242 (428)
T ss_pred CCCCCCCCCHHHHHHHH-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCH
T ss_conf 99876877838898752-49998868999627989768999999999996499279983789999999999997549988
Q ss_pred -HCC-----CC---------------CCCHHEECC--CCHHHHHH---HHHHCCCCC--EEEECHHHHHHHHHHCCCCCC
Q ss_conf -201-----57---------------751000034--78899999---997316982--899721687665420445563
Q gi|254780334|r 139 -RLN-----TI---------------NSSVYIAIE--TNVEDIIA---TLITNEKPD--LVIIDSIQTLWSQTAESSPGT 190 (479)
Q Consensus 139 -Rl~-----~~---------------~~~i~~~~e--~~l~~il~---~~i~~~~~~--~vVIDSIQtl~~~~~~s~~Gs 190 (479)
++. .. .-++++... ..+.++.. .+..+.+.+ ++|||++|.+..+. ......
T Consensus 243 ~~i~~~~~~~~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~g~~~~livIDYlqLi~~~~-~~~~~r 321 (428)
T PRK06749 243 GRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKVLIIVDYLQLITGDP-KHKGNR 321 (428)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCC-CCCCCH
T ss_conf 8862776779999999999999998559659975899767999999999999749987699976776505787-777789
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-CC---CCCCCEEEE
Q ss_conf 67999999999997530797899986303665-----------4331145787753027851555-66---654421567
Q gi|254780334|r 191 VIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-RN---TQYDYRILR 255 (479)
Q Consensus 191 vsQvre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~~---~~~~~R~Lr 255 (479)
..++-+++..|+.+||+.+||+++..|++..- .+-.+-.+|...|+|+.+--+. ++ .....--+-
T Consensus 322 ~~ev~~isr~lK~lAkel~vpvi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~eii 401 (428)
T PRK06749 322 FQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKETMQKEMTEIH 401 (428)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCHHHHHCCEEEEECCHHHCCCCCCCCCCEEEE
T ss_conf 99999999999999999699899971378552337899976012103330244277899972431048776788825999
Q ss_pred EEEECCCCCCCEEEE
Q ss_conf 632025676512799
Q gi|254780334|r 256 SVKNRFGPTDEIGVF 270 (479)
Q Consensus 256 ~~KNRfG~t~e~gvf 270 (479)
..|||.|+++.+-+.
T Consensus 402 vaKnR~G~~G~v~~~ 416 (428)
T PRK06749 402 VAKHRNGPVGSFKLR 416 (428)
T ss_pred EECCCCCCCCEEEEE
T ss_conf 972589997069999
No 27
>PRK08840 replicative DNA helicase; Provisional
Probab=99.91 E-value=7.5e-23 Score=186.28 Aligned_cols=199 Identities=16% Similarity=0.278 Sum_probs=145.3
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH---------
Q ss_conf 66323781248888659857870899954987518899999999985-03981999986463047888875---------
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--------- 138 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--------- 138 (479)
..-++||++.||+++ |||.||.+++|+|.||+|||+|+|+++.+++ +.|.+|+|+|.|++.+|+..|.-
T Consensus 197 ~~Gi~TG~~~LD~~~-~Gl~~G~LiviaaRPsmGKTalalnia~n~a~~~~~~v~~fSlEMs~~ql~~Rlls~~s~i~~~ 275 (464)
T PRK08840 197 VTGVSTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQT 275 (464)
T ss_pred CCCCCCCHHHHHHHC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 736888989998753-6987576799983798736899999999999965996799767799899999999985389820
Q ss_pred -------------HC----CC--CCCCHHEECCC--CHHHHH---HHHHHCC-CCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf -------------20----15--77510000347--889999---9997316-982899721687665420445563679
Q gi|254780334|r 139 -------------RL----NT--INSSVYIAIET--NVEDII---ATLITNE-KPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 139 -------------Rl----~~--~~~~i~~~~e~--~l~~il---~~~i~~~-~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
++ +. ...++++.... .+.++. ..+..+. +.+++|||++|.|..+... .....|
T Consensus 276 ~ir~g~l~~~e~~~i~~a~~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~~l~lvvIDYLqL~~~~~~~--~~r~~~ 353 (464)
T PRK08840 276 KIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRVAREHGGLSMIMVDYLQLMRVPALQ--DNRTLE 353 (464)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC--CHHHHH
T ss_conf 111488899999999999999984799588569987579999999999986489878996188660678864--036789
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCC-----------CCCCCHHHHHHHHHEEEEEECCC-C---CCCCCCEEEEEEE
Q ss_conf 9999999999753079789998630366-----------54331145787753027851555-6---6654421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKE-----------GQIAGPRVIEHMVDAVLYFEGGT-R---NTQYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~-----------G~iAGp~~LeH~VD~vl~~ege~-~---~~~~~~R~Lr~~K 258 (479)
+-+++..|+.+||+.+|||++..|++.+ ..+-.+-.+|--.|.|+.+.-+. + ....+.--|-..|
T Consensus 354 i~~isr~lK~lAkel~vpVv~lsQLnR~~e~r~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~~~~~~elivaK 433 (464)
T PRK08840 354 IAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPDSPLKGTAEIIIGK 433 (464)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCCCCEEEEEEEC
T ss_conf 99999999999999699899963168531116999987350125441054386899964431048988878806999972
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
||.|+++.+-+.
T Consensus 434 nR~G~~G~v~l~ 445 (464)
T PRK08840 434 QRNGPIGSVRLT 445 (464)
T ss_pred CCCCCCEEEEEE
T ss_conf 688986069999
No 28
>PRK09165 replicative DNA helicase; Provisional
Probab=99.91 E-value=7.1e-23 Score=186.45 Aligned_cols=202 Identities=20% Similarity=0.300 Sum_probs=145.4
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC---------------CCCCEEEEECCCCHHH
Q ss_conf 6663237812488886598578708999549875188999999999850---------------3981999986463047
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY---------------KKHRITYVSGEEAIGQ 132 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~---------------~g~~vlYvS~EEs~~Q 132 (479)
...-++||+..||+++ |||.||.+++|+|.||+|||+|+|++|.++|+ .|++|+|+|.|++..|
T Consensus 184 ~~~Gi~TGf~~LD~~t-~G~~~GdLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs~~q 262 (484)
T PRK09165 184 HLSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMSAEQ 262 (484)
T ss_pred CCCCEECCCHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHH
T ss_conf 9773315844599871-588877379996079997789999999999987410222233211368984899947799999
Q ss_pred HHHHHH--HCCCC-------------------------CCCHHEECC--CCHHHHH---HHHHHCCCCCEEEECHHHHHH
Q ss_conf 888875--20157-------------------------751000034--7889999---999731698289972168766
Q gi|254780334|r 133 IRLRAQ--RLNTI-------------------------NSSVYIAIE--TNVEDII---ATLITNEKPDLVIIDSIQTLW 180 (479)
Q Consensus 133 i~~Ra~--Rl~~~-------------------------~~~i~~~~e--~~l~~il---~~~i~~~~~~~vVIDSIQtl~ 180 (479)
+..|.- .-+++ .-++|+... .++.++. ..+..+.+.+++|||++|.|.
T Consensus 263 l~~Rlls~~s~V~~~~ir~g~l~~~e~~~i~~a~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~gl~livIDYLqLi~ 342 (484)
T PRK09165 263 LATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISALRARARRLKRQHGLDLLVIDYLQLIR 342 (484)
T ss_pred HHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHCC
T ss_conf 99999999726861355448999999999999999997198489779998799999999999986099889995176357
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCHHHHHHHHHEEEEEECCC-C---
Q ss_conf 5420445563679999999999975307978999863036654-----------331145787753027851555-6---
Q gi|254780334|r 181 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQ-----------IAGPRVIEHMVDAVLYFEGGT-R--- 245 (479)
Q Consensus 181 ~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~-----------iAGp~~LeH~VD~vl~~ege~-~--- 245 (479)
.+.-........|+-+++..|+.+||+.+|||++..|++..-+ +-.+-.+|--.|.|+.+--+. +
T Consensus 343 ~~~~~~~~~R~~ev~~Isr~LK~lAkel~ipVi~LsQLnR~~E~R~dkrP~lsDLReSGsIEQDADvV~flyR~~yY~~~ 422 (484)
T PRK09165 343 GSSKRSQDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVYREEYYLKR 422 (484)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCHHHHCCC
T ss_conf 88888612199999999999999999969969997457844234799997600103555202207789996447661344
Q ss_pred -C-C-C--------------CCCEEEEEEEECCCCCCCEEEE
Q ss_conf -6-6-5--------------4421567632025676512799
Q gi|254780334|r 246 -N-T-Q--------------YDYRILRSVKNRFGPTDEIGVF 270 (479)
Q Consensus 246 -~-~-~--------------~~~R~Lr~~KNRfG~t~e~gvf 270 (479)
+ + + .+.--+-.-|||.|+++.+-+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnRnG~~G~v~l~ 464 (484)
T PRK09165 423 KEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTVKLH 464 (484)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 587767520122321012458807999963788986069999
No 29
>PRK05595 replicative DNA helicase; Provisional
Probab=99.91 E-value=1.9e-22 Score=183.36 Aligned_cols=200 Identities=22% Similarity=0.309 Sum_probs=144.9
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC-
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--20157-
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI- 143 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~- 143 (479)
...-++||+..||+++ |||.||.+++|+|+||+|||+|++++|.+.+ +.|.+|+|+|.|++..|+..|.- ..+++
T Consensus 180 ~~~Gi~TGf~~LD~~t-~Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs~~ql~~R~ls~~s~i~~ 258 (444)
T PRK05595 180 ETTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMSKEQLAYKLLCSEANVDM 258 (444)
T ss_pred CCCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 9677658847699874-599857779998579898079999999999986699379995889999999999996469884
Q ss_pred ------------------------CCCHHEECCC--CHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf ------------------------7510000347--889999---99973169828997216876654204455636799
Q gi|254780334|r 144 ------------------------NSSVYIAIET--NVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 144 ------------------------~~~i~~~~e~--~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
..++++.... ++.++. ..+..+.+++++|||++|-|.... ..-....++
T Consensus 259 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~liiiDYlqLi~~~~--~~~~r~~ev 336 (444)
T PRK05595 259 LRLRTGNLEDKDWENIARASGPLAAAKIYIDDTAGVSVMEMRSKCRRLKIEHGIDLILIDYLQLMSGGK--SSESRQQEV 336 (444)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCC--CCCCHHHHH
T ss_conf 423268979999999999999985489705489996489999999999987399989982376357898--888899999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC----CCCCCCCEEEEEEEE
Q ss_conf 9999999997530797899986303665-----------4331145787753027851555----666544215676320
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT----RNTQYDYRILRSVKN 259 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~----~~~~~~~R~Lr~~KN 259 (479)
-+++..|+.+||+.+||+++..|++.+- .+-.+-.+|-..|+|+.+--+. ...+...--+-..||
T Consensus 337 ~~isr~LK~lAkel~ipvi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~elivaKn 416 (444)
T PRK05595 337 SEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADLVMFLYRDEYYNKETEDKNVAECIIAKQ 416 (444)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 99999999999996997999702685411279999761010122303543768989654421488877788258999806
Q ss_pred CCCCCCCEEEE
Q ss_conf 25676512799
Q gi|254780334|r 260 RFGPTDEIGVF 270 (479)
Q Consensus 260 RfG~t~e~gvf 270 (479)
|.|+++.+-+.
T Consensus 417 R~G~~G~v~~~ 427 (444)
T PRK05595 417 RNGPTGTVKLA 427 (444)
T ss_pred CCCCCCEEEEE
T ss_conf 88996159999
No 30
>PRK08082 consensus
Probab=99.91 E-value=1.1e-22 Score=185.01 Aligned_cols=200 Identities=23% Similarity=0.341 Sum_probs=147.0
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--------
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--------
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ-------- 138 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~-------- 138 (479)
+..-++||+..||+++ |||.||.+++|+|+||+|||+|++++|.+++ +.|.+|+|+|.|++.+|+..|.-
T Consensus 182 ~~~Gi~TGf~~LD~lt-~G~~~g~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM~~~~l~~R~la~~s~i~~ 260 (453)
T PRK08082 182 DITGIPTGFTELDRMT-AGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMGADQLVMRMLCAEGNIDA 260 (453)
T ss_pred CCCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCH
T ss_conf 9775548848888641-477758579998678875789999999999985599489973138989999999971558886
Q ss_pred -HC--C----------------CCCCCHHEECC--CCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf -20--1----------------57751000034--7889999---99973169828997216876654204455636799
Q gi|254780334|r 139 -RL--N----------------TINSSVYIAIE--TNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 139 -Rl--~----------------~~~~~i~~~~e--~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
++ + +...++++... .++.++. ..+..+.+.+++|||++|.|..+.- +......|+
T Consensus 261 ~~i~~g~l~~~e~~~i~~a~~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~~~~livIDYlqLi~~~~~-~~~~r~~ev 339 (453)
T PRK08082 261 QRLRTGSLTSDDWGKLTMAMGSLSNAGIYIDDTPGIRVNEIRAKCRRLKQEQGLGMILIDYLQLIQGSGR-SGENRQQEV 339 (453)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCC-CCCCHHHHH
T ss_conf 6775189999999999999998506973897899998999999999999866998899950773377898-887899999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECC-CCC---CCCCCEEEEEEEE
Q ss_conf 9999999997530797899986303665-----------433114578775302785155-566---6544215676320
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGG-TRN---TQYDYRILRSVKN 259 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege-~~~---~~~~~R~Lr~~KN 259 (479)
.+++..|+.+||+.+|||++..|++..- .+-.+-.+|-..|.|+.+--+ .++ ...+.--+-..||
T Consensus 340 ~~isr~LK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~e~ivaK~ 419 (453)
T PRK08082 340 SEISRTLKALARELEVPVIALSQLSRGVESRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDRETENKNIIEIIIAKQ 419 (453)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEECCHHHCCCCCCCCCEEEEEEECC
T ss_conf 99999999999996997999644784312379999771010265520533668989655654388888788069999736
Q ss_pred CCCCCCCEEE
Q ss_conf 2567651279
Q gi|254780334|r 260 RFGPTDEIGV 269 (479)
Q Consensus 260 RfG~t~e~gv 269 (479)
|.|+++.+-+
T Consensus 420 RnG~~g~v~l 429 (453)
T PRK08082 420 RNGPVGTVEL 429 (453)
T ss_pred CCCCCCEEEE
T ss_conf 8998615999
No 31
>PRK08760 replicative DNA helicase; Provisional
Probab=99.91 E-value=1.4e-22 Score=184.21 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=145.6
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC-
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--20157-
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI- 143 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~- 143 (479)
...-++||+..||+++ |||.||.+++|+|.||+|||+|++++|.+++ +.+.+|+|+|.|++.+|+..|.- .-+++
T Consensus 208 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fSLEMs~~ql~~Rlls~~s~v~~ 286 (476)
T PRK08760 208 NITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINA 286 (476)
T ss_pred CCEECCCCCHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCH
T ss_conf 9533677968899744-699877779998778874789999999999983799789970369999999999998338976
Q ss_pred ------------------------CCCHHEECC--CCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf ------------------------751000034--788999---999973169828997216876654204455636799
Q gi|254780334|r 144 ------------------------NSSVYIAIE--TNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 144 ------------------------~~~i~~~~e--~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
..++|+... ..++.+ ...+....+.++||||++|.|..+.- .-....|+
T Consensus 287 ~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idD~~~~t~~~ir~~~R~~k~~~~l~lvvIDYLqL~~~~~~--~~~r~~~v 364 (476)
T PRK08760 287 QRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGN--SENRATEI 364 (476)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCC--CCCHHHHH
T ss_conf 7776489999999999999999860881685799999999999999998727998799970764158888--74488999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-C----CCCCCCEEEEEEE
Q ss_conf 9999999997530797899986303665-----------4331145787753027851555-6----6654421567632
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-R----NTQYDYRILRSVK 258 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~----~~~~~~R~Lr~~K 258 (479)
-+++..|+.+||+.+|||++..|++.+- .+-++-.+|--.|+|+.+.-+. + +...+.--+-..|
T Consensus 365 ~~isr~lK~lAkel~vpVi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV~~l~R~~~y~~~~~~~~~~~e~ivaK 444 (476)
T PRK08760 365 SEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKENSPDKGLAEIIIGK 444 (476)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 99999999999997997899631576634479999860011254420320868999624532387679888807999974
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
||.|+++.+-+.
T Consensus 445 nR~G~~G~v~l~ 456 (476)
T PRK08760 445 HRGGPTGSCKLK 456 (476)
T ss_pred CCCCCCCEEEEE
T ss_conf 678986269999
No 32
>PRK05636 replicative DNA helicase; Provisional
Probab=99.91 E-value=1.4e-22 Score=184.33 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=147.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCC---
Q ss_conf 66323781248888659857870899954987518899999999985-03981999986463047888875--2015---
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNT--- 142 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~--- 142 (479)
..-++||+..||+++ |||.||.+++|+|.||+|||+|+|+++.+++ +.|.+|+|+|.|++..|+..|.- .-++
T Consensus 247 ~~Gi~TGf~~LD~~t-~Gl~~G~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~ 325 (507)
T PRK05636 247 ATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMSKSEIVMRLLSAEAEVRLA 325 (507)
T ss_pred CEEEECCCHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHH
T ss_conf 525658808899755-0888356799973787866899999999999876993799715699899999999984798878
Q ss_pred ----------------------CCCCHHEECCC--CHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf ----------------------77510000347--889999---999731698289972168766542044556367999
Q gi|254780334|r 143 ----------------------INSSVYIAIET--NVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 143 ----------------------~~~~i~~~~e~--~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
...++|+.... ++.+|. ..+..+.+.+++|||++|.|..+.- ......++.
T Consensus 326 ~ir~g~l~~~~~~~l~~a~~~l~~~pl~IdD~~~lti~~Ira~aRrlk~~~~l~livVDYLQLm~~~~~--~~~R~~ev~ 403 (507)
T PRK05636 326 DMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKMIVVDYLQLMSSGKR--VESRQQEVS 403 (507)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCC--CCCHHHHHH
T ss_conf 885588788999999999999861988998499976999999999998617999899845884568888--766899999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCHHHHHHHHHEEEEEECC-CC---CCCCCCEEEEEEEEC
Q ss_conf 9999999975307978999863036654-----------33114578775302785155-56---665442156763202
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQ-----------IAGPRVIEHMVDAVLYFEGG-TR---NTQYDYRILRSVKNR 260 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~-----------iAGp~~LeH~VD~vl~~ege-~~---~~~~~~R~Lr~~KNR 260 (479)
+++..|+.+||+.+|||++..|++..-+ +-.+-.+|--.|.|+++--+ .. +...+.--|-.-|||
T Consensus 404 ~ISr~LK~lAkel~vpVi~LsQLnR~~E~R~dkrP~lsDLReSG~IEQDADvV~~l~R~~~~~~~~~~~~~~elivaKnR 483 (507)
T PRK05636 404 EFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKDDERAGEADIILAKHR 483 (507)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 99999999999979988997126844234799997720212645115427799996453435888877780699997268
Q ss_pred CCCCCCEEEEEE
Q ss_conf 567651279985
Q gi|254780334|r 261 FGPTDEIGVFEM 272 (479)
Q Consensus 261 fG~t~e~gvf~m 272 (479)
.|+++.+-+.-.
T Consensus 484 nG~~G~v~l~f~ 495 (507)
T PRK05636 484 GGPIDTVQVAHQ 495 (507)
T ss_pred CCCCEEEEEEEE
T ss_conf 898516999984
No 33
>PRK08006 replicative DNA helicase; Provisional
Probab=99.91 E-value=1.6e-22 Score=183.87 Aligned_cols=199 Identities=18% Similarity=0.278 Sum_probs=145.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH---------
Q ss_conf 66323781248888659857870899954987518899999999985-03981999986463047888875---------
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--------- 138 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--------- 138 (479)
..-++||+..||+++ |||.||.+++|+|+||+|||+|+|+++.+.+ +.|.+|+|+|.|++..|+..|.-
T Consensus 204 i~Gi~TGf~~LD~~t-~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~~~~~V~~fSlEMs~~ql~~Rlla~~s~v~~~ 282 (471)
T PRK08006 204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQT 282 (471)
T ss_pred CCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 743668838898641-6882173899994699876999999999999866995799816799999999999974477755
Q ss_pred -------------HC----C--CCCCCHHEECC--CCHHHHHH---HHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf -------------20----1--57751000034--78899999---9973-16982899721687665420445563679
Q gi|254780334|r 139 -------------RL----N--TINSSVYIAIE--TNVEDIIA---TLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 139 -------------Rl----~--~~~~~i~~~~e--~~l~~il~---~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
|+ + ....++++... ..+.++.. .+.. ..+.++||||++|.|..+... .....|
T Consensus 283 ~i~~g~l~~~e~~~l~~~~~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~gl~lvvIDYLqL~~~~~~~--~~r~~e 360 (471)
T PRK08006 283 RIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLS--DNRTLE 360 (471)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC--CCHHHH
T ss_conf 453688799999999999999975188577368999899999999999986489868996388661678744--106689
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-C---CCCCCCEEEEEEE
Q ss_conf 99999999997530797899986303665-----------4331145787753027851555-6---6654421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-R---NTQYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~---~~~~~~R~Lr~~K 258 (479)
+-+++..|+.+||+.+|||++..|++.+- .+-.+-.+|--.|.|+.+.-+. + ......--|-..|
T Consensus 361 i~~isr~lK~lAkel~ipVi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~~~~~~elivaK 440 (471)
T PRK08006 361 IAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGK 440 (471)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999999999999699689970168310016999987340224340154286899975503357888878816999973
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
||.|+++.+-+.
T Consensus 441 nR~G~~G~v~l~ 452 (471)
T PRK08006 441 QRNGPIGTVRLT 452 (471)
T ss_pred CCCCCCEEEEEE
T ss_conf 688986069999
No 34
>PRK08694 consensus
Probab=99.90 E-value=2.7e-22 Score=182.22 Aligned_cols=199 Identities=20% Similarity=0.286 Sum_probs=144.4
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHH--------
Q ss_conf 6663237812488886598578708999549875188999999999850398-1999986463047888875--------
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKH-RITYVSGEEAIGQIRLRAQ-------- 138 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~-~vlYvS~EEs~~Qi~~Ra~-------- 138 (479)
...-++||+..||+++ |||.||.+++|+|+||+|||+|+++++.+++..++ +|+|+|.|++..|+..|.-
T Consensus 197 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLEMs~~~l~~Rlla~~s~v~~ 275 (468)
T PRK08694 197 EVTGVPTGFIDLDKKT-SGLQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLDQ 275 (468)
T ss_pred CCCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCH
T ss_conf 8751557968898764-488878479996178653789999999999984798479977889999999999997259863
Q ss_pred -H--CC----------------CCCCCHHEECC--CCHHHHHH---HHHHC--CCCCEEEECHHHHHHHHHHCCCCC-CH
Q ss_conf -2--01----------------57751000034--78899999---99731--698289972168766542044556-36
Q gi|254780334|r 139 -R--LN----------------TINSSVYIAIE--TNVEDIIA---TLITN--EKPDLVIIDSIQTLWSQTAESSPG-TV 191 (479)
Q Consensus 139 -R--l~----------------~~~~~i~~~~e--~~l~~il~---~~i~~--~~~~~vVIDSIQtl~~~~~~s~~G-sv 191 (479)
+ -+ +...++++... .++.++.. .+..+ .++++||||++|-|..+ +... ..
T Consensus 276 ~~i~~g~l~~~e~~~~~~a~~~l~~~pl~idd~~~~t~~~i~a~~r~~~~~~~~kl~~vvIDYLqLi~~~---~~~~~r~ 352 (468)
T PRK08694 276 SVLKTGRLEDEHWGRLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLIVIDYLQLMAGS---GRSDNRA 352 (468)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCC---CCCCCHH
T ss_conf 2110489999999999999999862996897699998879999999999983898738997367541688---8765599
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-C---CCCCCCEEEEE
Q ss_conf 7999999999997530797899986303665-----------4331145787753027851555-6---66544215676
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-R---NTQYDYRILRS 256 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~---~~~~~~R~Lr~ 256 (479)
.|+-+++..|+.+||+.+|||++..|++.+- .+-++-.+|--.|.|+.+.-+. + ....+.--+-.
T Consensus 353 ~~i~~isr~LK~lAkel~ipvi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqDAD~v~~l~R~~~y~~~~~~~~~~e~iv 432 (468)
T PRK08694 353 SELGEISRSLKALAKELQVPIIALSQLSRTVESRTDKRPMMSDLRESGAIEQDADLIMFMYRDEYYNQDSPMKGLAECII 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCCCCEEEEEE
T ss_conf 99999999999999997998999632685423379999871301255510533768999634310388988788079999
Q ss_pred EEECCCCCCCEEEE
Q ss_conf 32025676512799
Q gi|254780334|r 257 VKNRFGPTDEIGVF 270 (479)
Q Consensus 257 ~KNRfG~t~e~gvf 270 (479)
.|||.|+|+.+-+.
T Consensus 433 aK~R~G~~G~v~l~ 446 (468)
T PRK08694 433 GKHRNGPVGKIFLT 446 (468)
T ss_pred ECCCCCCCCEEEEE
T ss_conf 70578986159999
No 35
>PRK05748 replicative DNA helicase; Provisional
Probab=99.90 E-value=3.2e-22 Score=181.62 Aligned_cols=201 Identities=20% Similarity=0.303 Sum_probs=145.3
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--------
Q ss_conf 666323781248888659857870899954987518899999999985-03981999986463047888875--------
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ-------- 138 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~-------- 138 (479)
+..-++||+..||+++ |||.||.+++|+|.||+|||+|++++|.+++ +.|.+|+|+|.|++..|+..|.-
T Consensus 182 ~~~Gi~TG~~~LD~~~-~G~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~s~v~~ 260 (448)
T PRK05748 182 DITGIPTGFRDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGRIDQ 260 (448)
T ss_pred CCCEEECCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCH
T ss_conf 9761057827899982-798867379998479987689999999999985698089981778888999999999746777
Q ss_pred --------------HCC-----CCCCCHHEECC--CCHHHHHH---HHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf --------------201-----57751000034--78899999---9973-16982899721687665420445563679
Q gi|254780334|r 139 --------------RLN-----TINSSVYIAIE--TNVEDIIA---TLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 139 --------------Rl~-----~~~~~i~~~~e--~~l~~il~---~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
++. +...++++... .++.++.. .+.. ..+.+++|||++|.|..+.. .......|
T Consensus 261 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vviDYlqli~~~~~-~~~~r~~e 339 (448)
T PRK05748 261 QKLRTGQLTDEDWPKLTIAVGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLIVIDYLQLIQGSGR-SGENRQQE 339 (448)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCCHHHH
T ss_conf 77762899999999999999998659837855898868999999999999759988999716864477787-76439999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-CCC---CCCCEEEEEEE
Q ss_conf 99999999997530797899986303665-----------4331145787753027851555-666---54421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-RNT---QYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~~~---~~~~R~Lr~~K 258 (479)
+.+++..|+.+||+.+||+++..|++.+- .+-++-.+|-..|+|+.+.-+. ++. ....--+-..|
T Consensus 340 v~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLr~SG~IEqdAD~v~~l~R~~~y~~~~~~~~~~e~ivaK 419 (448)
T PRK05748 340 VSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKNTIEIIIGK 419 (448)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCEEEEECCHHHCCCCCCCCCEEEEEEEC
T ss_conf 99999999999999699889970268432225899987545224453032076898965343238888889827999972
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
||.|+++.+-+.
T Consensus 420 nR~G~~g~v~~~ 431 (448)
T PRK05748 420 QRNGPVGTVRLA 431 (448)
T ss_pred CCCCCCCEEEEE
T ss_conf 689986059999
No 36
>PRK07263 consensus
Probab=99.90 E-value=3.9e-22 Score=181.01 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=143.9
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCC-
Q ss_conf 5666323781248888659857870899954987518899999999985-03981999986463047888875--2015-
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNT- 142 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~- 142 (479)
.+..-++||+..||+++| ||.||.+++|+|.||+|||+|++++|.+++ +.|.+|+|+|.|++..|+..|.- .-++
T Consensus 181 ~~~~Gi~TGf~~LD~~t~-Gl~~GdLiviaaRPsmGKTa~alnia~~iA~~~~~~V~~fSlEMs~~ql~~R~la~~~~i~ 259 (453)
T PRK07263 181 SDVTGLPTGFRDLDKITT-GLHPDQLIILAARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEMGAESLVDRMLAAEGMVD 259 (453)
T ss_pred CCCCCCCCCHHHHHHHHC-CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 997767588587997732-8997868999727888478999999999998559828999246998999999999861733
Q ss_pred ------------------------CCCCHHEECC--CCHHHHHHHH---HH--CCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf ------------------------7751000034--7889999999---73--169828997216876654204455636
Q gi|254780334|r 143 ------------------------INSSVYIAIE--TNVEDIIATL---IT--NEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 143 ------------------------~~~~i~~~~e--~~l~~il~~~---i~--~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
..-++++... .++.++.... .. ..+.+++|||++|.+..+. .....
T Consensus 260 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~~~~l~livIDYlqLi~~~~---~~~r~ 336 (453)
T PRK07263 260 SHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKITEIRARSRKLSQEVDGGLGLIVIDYLQLITGTK---PENRQ 336 (453)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCC---CCCHH
T ss_conf 103313652479999999999874068589978999998999999999998605898689973676446888---53599
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECC-CCCCC---------CC
Q ss_conf 7999999999997530797899986303665-----------433114578775302785155-56665---------44
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGG-TRNTQ---------YD 250 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege-~~~~~---------~~ 250 (479)
.++-+++..|+.+||+.+|||++..|++.+- .+-.+-.+|-..|.|+.+--+ .++.+ ..
T Consensus 337 ~ev~~isr~lK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~ 416 (453)
T PRK07263 337 QEVSDISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRKEGDEAEEAVEDN 416 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHCCCEEEEECCHHHCCCCCCCCCCCCCCC
T ss_conf 99999999999999987997999743684312368999774332254542002757888644533477655321267787
Q ss_pred CEEEEEEEECCCCCCCEEEE
Q ss_conf 21567632025676512799
Q gi|254780334|r 251 YRILRSVKNRFGPTDEIGVF 270 (479)
Q Consensus 251 ~R~Lr~~KNRfG~t~e~gvf 270 (479)
.--+-.-|||.|+++.+-+.
T Consensus 417 ~~e~ivaKnR~G~~G~v~~~ 436 (453)
T PRK07263 417 TIEVILEKNRAGARGTVKLM 436 (453)
T ss_pred EEEEEEECCCCCCCEEEEEE
T ss_conf 17999976789986069999
No 37
>PRK06321 replicative DNA helicase; Provisional
Probab=99.90 E-value=3e-22 Score=181.88 Aligned_cols=201 Identities=18% Similarity=0.297 Sum_probs=145.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH--HCCCCC-
Q ss_conf 66323781248888659857870899954987518899999999985039-81999986463047888875--201577-
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK-HRITYVSGEEAIGQIRLRAQ--RLNTIN- 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g-~~vlYvS~EEs~~Qi~~Ra~--Rl~~~~- 144 (479)
..-++||+..||++++ ||.||.+++|+|.||+|||+|+|++|.+++.++ .+|+|+|.|+|.+|+..|.- .-+++.
T Consensus 206 itGipTGf~~LD~lt~-Gl~~GdliviaaRPsmGKTalalnia~~~a~~~~~~v~~fSLEMs~~ql~~R~ls~~s~i~~~ 284 (472)
T PRK06321 206 ISGIPTHFIDLDKMIN-GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESK 284 (472)
T ss_pred CCCCCCCHHHHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 6422568488999855-988675799853899977999999999999856994699757799999999998740376755
Q ss_pred ------------------------CCHHEECC--CCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHC-CCCCCHHHH
Q ss_conf ------------------------51000034--7889999---99973169828997216876654204-455636799
Q gi|254780334|r 145 ------------------------SSVYIAIE--TNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAE-SSPGTVIQV 194 (479)
Q Consensus 145 ------------------------~~i~~~~e--~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~-s~~GsvsQv 194 (479)
.++++... .++.++. ..+....+.+++|||++|-|..+... .......++
T Consensus 285 ~i~~g~l~~~e~~~~~~a~~~l~~~~l~idd~~~~ti~~i~~~~r~~k~~~~l~~vvIDYlqL~~~~~~~~~~~~r~~~i 364 (472)
T PRK06321 285 KISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGTLRNSESRQTEI 364 (472)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCHHHHH
T ss_conf 21047999999999999999985487578679999899999999999873899879997277416777777788899999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC---CCCCCCCEEEEEEEEC
Q ss_conf 9999999997530797899986303665-----------4331145787753027851555---6665442156763202
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT---RNTQYDYRILRSVKNR 260 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~---~~~~~~~R~Lr~~KNR 260 (479)
-+++..|+.+||+.+|||++..|++..- .+-.+-.+|-..|+|+++--+. .+.....--+-.-|||
T Consensus 365 ~~isr~lK~lAkel~vpvi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~V~~l~R~~~~~~~~~~~~~e~ivaK~R 444 (472)
T PRK06321 365 SEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTAELIVAKNR 444 (472)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHHCCCCCCCCCEEEEEECCC
T ss_conf 99999999999997997999722684312279999762301264410430868999744532498788982699997267
Q ss_pred CCCCCCEEEE
Q ss_conf 5676512799
Q gi|254780334|r 261 FGPTDEIGVF 270 (479)
Q Consensus 261 fG~t~e~gvf 270 (479)
.|+|+.+-+.
T Consensus 445 ~G~~g~v~~~ 454 (472)
T PRK06321 445 HGSIGSVPLV 454 (472)
T ss_pred CCCCCEEEEE
T ss_conf 8987259999
No 38
>PRK06904 replicative DNA helicase; Validated
Probab=99.90 E-value=5.4e-22 Score=180.00 Aligned_cols=214 Identities=17% Similarity=0.287 Sum_probs=150.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH---------
Q ss_conf 66323781248888659857870899954987518899999999985039-81999986463047888875---------
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK-HRITYVSGEEAIGQIRLRAQ--------- 138 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g-~~vlYvS~EEs~~Qi~~Ra~--------- 138 (479)
..-++||+..||+++ |||.||.+++|+|.||+|||+|+|++|.+++..+ .+|+|+|.|++..|+..|.-
T Consensus 201 ~~Gi~TG~~~LD~~t-~Gl~~g~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM~~~~l~~R~ls~~s~v~~~ 279 (472)
T PRK06904 201 VTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQT 279 (472)
T ss_pred CCEECCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 623228979997441-5887575799973798756899999999999955995799778799999999999986499988
Q ss_pred HC--C----------------CC--CCCHHEECCC--CHHHHHHH---HH-HCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf 20--1----------------57--7510000347--88999999---97-31698289972168766542044556367
Q gi|254780334|r 139 RL--N----------------TI--NSSVYIAIET--NVEDIIAT---LI-TNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 139 Rl--~----------------~~--~~~i~~~~e~--~l~~il~~---~i-~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
++ + .. ..++|+.... .+.++... +. +..+.+++|||++|.|..+.. ......
T Consensus 280 ~i~~g~~l~~~e~~~~~~~~~~l~~~~~l~idd~~~~t~~~i~~~~r~~~~~~~~l~~vvIDYLqL~~~~~~--~~~r~~ 357 (472)
T PRK06904 280 KIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF--EDNRTL 357 (472)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC--CCCHHH
T ss_conf 864688560999999999999984689816846999999999999999998738997899638866048887--777889
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-----CCCCCCCEEEEE
Q ss_conf 999999999997530797899986303665-----------4331145787753027851555-----666544215676
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-----RNTQYDYRILRS 256 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-----~~~~~~~R~Lr~ 256 (479)
|+.+++..|+.+||+.+|||++..|++.+- .+-.+-.+|--.|.|+.+.-+. .+...+.--+-.
T Consensus 358 ei~~isr~LK~lAkel~ipvi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~~~~~~~eliv 437 (472)
T PRK06904 358 EIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTEDNKGVAEIII 437 (472)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHCCCCCCCCCCCCEEEEE
T ss_conf 99999999999999979988997326843112799988602022523015428689996442004888767788379999
Q ss_pred EEECCCCCCCEEE-EEECCCCCEEECCHHH
Q ss_conf 3202567651279-9851566311014045
Q gi|254780334|r 257 VKNRFGPTDEIGV-FEMSDKGLQEVSDPSK 285 (479)
Q Consensus 257 ~KNRfG~t~e~gv-f~m~~~Gl~~v~~ps~ 285 (479)
-|||.|+++.+-+ |.-.-.-...+.|++.
T Consensus 438 aKnR~G~~G~v~~~f~~~~~rF~~~~~~~~ 467 (472)
T PRK06904 438 GKQRNGPIGRVRLAFQGQYSRFDNLANIPQ 467 (472)
T ss_pred ECCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 747789861699998578774304578987
No 39
>KOG2004 consensus
Probab=99.90 E-value=1.5e-22 Score=184.00 Aligned_cols=175 Identities=22% Similarity=0.303 Sum_probs=146.4
Q ss_pred HHCCCC--CCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC----CCHHHHHHHHHHHHHHC------CCCCC
Q ss_conf 511476--6767348997304897411553310115778772477604----68666555589887511------11024
Q gi|254780334|r 287 FLSDRD--STSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG----WDSSRLAMILAVLEARC------NIKFG 354 (479)
Q Consensus 287 fl~~~~--~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G----~d~~rl~~llAvl~k~~------~~~~~ 354 (479)
|.+++- ...+|++.+.+|+-...-..-|++-......+ |.-..+| +......+...+++.++ +..|.
T Consensus 708 f~~e~~y~~tp~GVvmGLaWT~mGG~~lyvEts~~~~~~~-g~l~~TGqLGDVMKESa~iA~t~ar~~~~~~~p~n~~l~ 786 (906)
T KOG2004 708 FTSERMYEVTPPGVVMGLAWTAMGGSTLYVETSLMRGLGD-GSLEITGQLGDVMKESAQIAYTWARAFLSKKEPENKFLE 786 (906)
T ss_pred CCHHHHHCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCC-CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHC
T ss_conf 2077775037983699878853787578999887315778-856883303888999999999999999876482310011
Q ss_pred CCHHHEECCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHH
Q ss_conf 62221001456-11154325879999999972488688785999874247316340788999999997699899977576
Q gi|254780334|r 355 NHDVHLNIAGG-YRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESA 433 (479)
Q Consensus 355 ~~Di~~nv~gG-~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n 433 (479)
+.|||++++.| .++++||+...++.|++|-..++|++++++|+||++|+|.|.||+|+..++.+|+|.|.|++|.|+.|
T Consensus 787 ~~~IHlH~PeGAtpKDGPSAGvTmvTsLlSLa~~kpVr~d~AMTGEvTLtG~VLpiGGiKEK~iAA~RsG~k~ii~P~~N 866 (906)
T KOG2004 787 NSDIHLHVPEGATPKDGPSAGVTMVTALLSLALGKPVRQDLAMTGEVTLTGKVLPVGGIKEKTIAARRSGVKTIIFPEAN 866 (906)
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCEEEEECCCC
T ss_conf 56258856899889998753078999999997099755554212357764446742763788999887288289725643
Q ss_pred HHHCC------CCCEEEEEECCHHHHHHHHHCCCC
Q ss_conf 53228------588089983839999998614764
Q gi|254780334|r 434 KGECK------IGMLDRQYIKNLSDLVKKITALQK 462 (479)
Q Consensus 434 ~~e~~------~~~i~i~~v~~l~e~i~~l~~~~~ 462 (479)
..+-. ..+++++.+++..|+++..+....
T Consensus 867 ~~D~eelp~~vkegLev~~a~~yedv~~~aF~~~~ 901 (906)
T KOG2004 867 RRDFEELPENVKEGLEVHFAETYEDVFEAAFDDGP 901 (906)
T ss_pred HHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCC
T ss_conf 66698745888706706638889999999727885
No 40
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.2e-21 Score=175.57 Aligned_cols=216 Identities=22% Similarity=0.311 Sum_probs=169.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 34556663237812488886598578708999549875188999999999850398199998646304788887520157
Q gi|254780334|r 64 ESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI 143 (479)
Q Consensus 64 ~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~ 143 (479)
....+..+++||...||..||||+++|.++.|.|++|+|||||++|++.+..+.|.+|+|++.|.+.+- .|+..++..
T Consensus 34 ~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p--~r~~~l~~~ 111 (279)
T COG0468 34 ERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDP--ERAKQLGVD 111 (279)
T ss_pred HHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHH
T ss_conf 876436601655055787746886553589984688765466899998886537980899958999899--999998875
Q ss_pred -CCCHHEECCCCHHHH---HHHHHHCCC--CCEEEECHHHHHHHHHHCCCCCCH-HHHH---HHHHHHHHHHHHCCCEEE
Q ss_conf -751000034788999---999973169--828997216876654204455636-7999---999999997530797899
Q gi|254780334|r 144 -NSSVYIAIETNVEDI---IATLITNEK--PDLVIIDSIQTLWSQTAESSPGTV-IQVR---TSVQAMIQYAKKNGVAMV 213 (479)
Q Consensus 144 -~~~i~~~~e~~l~~i---l~~~i~~~~--~~~vVIDSIQtl~~~~~~s~~Gsv-sQvr---e~~~~L~~~AK~~~i~vi 213 (479)
.+++++....+.++. +..+..... ++++||||+.+++....... +.+ .|.| .....|..+|++++++++
T Consensus 112 ~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d-~~~~~~~r~ls~~l~~L~~~a~~~~~~vi 190 (279)
T COG0468 112 LLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIED-GHLGLRARLLSKALRKLTRLANKYNTAVI 190 (279)
T ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 42153686689779999999999875468878899825743463655485-34899999999999999999997495899
Q ss_pred EEEEE-CCCCCCC-------CHHHHHHHHHEEEEEECCCC--CCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECC
Q ss_conf 98630-3665433-------11457877530278515556--6654421567632025676512799851566311014
Q gi|254780334|r 214 LVGHV-TKEGQIA-------GPRVIEHMVDAVLYFEGGTR--NTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSD 282 (479)
Q Consensus 214 lighv-TK~G~iA-------Gp~~LeH~VD~vl~~ege~~--~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ 282 (479)
++.|| .|.|... |-+.|.|..-+-+++.--.. +.....|..+.+||+.-|-..-..|..++.|......
T Consensus 191 ~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~~~~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~ 269 (279)
T COG0468 191 FTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLKEDVGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREG 269 (279)
T ss_pred EECCEEEECCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 9784034067666886658772388755324777652244323568738999974798998765689965076466532
No 41
>PRK08506 replicative DNA helicase; Provisional
Probab=99.89 E-value=5.9e-22 Score=179.75 Aligned_cols=204 Identities=18% Similarity=0.300 Sum_probs=144.6
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH--HCCCC---
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047888875--20157---
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ--RLNTI--- 143 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~--- 143 (479)
..-++||+..||+++ |||.||.+++|+|+||+|||+|+|++|.++++.|++|+|+|.|++..|+..|.- .-+++
T Consensus 173 ~~Gi~TGf~~LD~~t-~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~~~~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~ 251 (473)
T PRK08506 173 IIGLDTGFKQLNKMT-KGFNKGDLIIIAARPSMGKTTLVLNMVLKALNQGKGVAFFSLEMPAEQLMLRMLSAKTSIPLQN 251 (473)
T ss_pred CCCCCCCHHHHHHHH-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 534778808788872-6998562799950799867899999999999659965898224799999999999728878310
Q ss_pred ----------------------CCCHHEECC--CCHHHHHH---HHHHC-CCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf ----------------------751000034--78899999---99731-698289972168766542044556367999
Q gi|254780334|r 144 ----------------------NSSVYIAIE--TNVEDIIA---TLITN-EKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 144 ----------------------~~~i~~~~e--~~l~~il~---~~i~~-~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
..++|+... ..+.+|.. .+..+ .+.+++|||++|-|..+.- ......|+-
T Consensus 252 lr~g~l~~~e~~~~~~a~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k~~~~~l~livIDYLQLm~~~~~--~~~R~~ev~ 329 (473)
T PRK08506 252 LRTGDLDDDEWENLSDACDELSQKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSKN--FKDRHLQIS 329 (473)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC--CCCHHHHHH
T ss_conf 006899999999999999998659889988999999999999999999769987899636755468887--530889999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCHHHHHHHHHEEEEEECC-CCC----CCCC---------
Q ss_conf 9999999975307978999863036654-----------33114578775302785155-566----6544---------
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQ-----------IAGPRVIEHMVDAVLYFEGG-TRN----TQYD--------- 250 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~-----------iAGp~~LeH~VD~vl~~ege-~~~----~~~~--------- 250 (479)
+++..|+.+||+.+|||++..|++..-+ +-.+-.+|-..|.|+.+--+ .+. ....
T Consensus 330 ~ISr~LK~lAkEl~vPViaLSQLnR~vE~R~dkrP~lSDLReSGsIEQDADvV~flyR~~yY~~~~~~~~~~~~~~~~~~ 409 (473)
T PRK08506 330 EISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKEDKAKKEGKE 409 (473)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEECCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999969979997036876555789987600113433135437689996527753665333333321111321
Q ss_pred ------------CEEEEEEEECCCCCCCEEEEEECCC
Q ss_conf ------------2156763202567651279985156
Q gi|254780334|r 251 ------------YRILRSVKNRFGPTDEIGVFEMSDK 275 (479)
Q Consensus 251 ------------~R~Lr~~KNRfG~t~e~gvf~m~~~ 275 (479)
.=-+-.-|||.|||+.+-+.=..+.
T Consensus 410 ~~~~~~~~~~~~~ae~iiaK~RnG~tG~v~l~f~~~~ 446 (473)
T PRK08506 410 ERRIHKQNKSIEEAEIIIGKNRNGPTGTVKLIFQKEF 446 (473)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCC
T ss_conf 1122223567772489996577898725999986587
No 42
>pfam05362 Lon_C Lon protease (S16) C-terminal proteolytic domain. The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops.
Probab=99.89 E-value=1.9e-22 Score=183.33 Aligned_cols=181 Identities=20% Similarity=0.361 Sum_probs=147.9
Q ss_pred CCCEEECCHHHHHHCCC-CCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC----CCHHHHHHHHHHHHHHC
Q ss_conf 66311014045551147-66767348997304897411553310115778772477604----68666555589887511
Q gi|254780334|r 275 KGLQEVSDPSKIFLSDR-DSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG----WDSSRLAMILAVLEARC 349 (479)
Q Consensus 275 ~Gl~~v~~ps~~fl~~~-~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G----~d~~rl~~llAvl~k~~ 349 (479)
+-|.++-.|..+..... ..+.+|.+.+.+|.+...-+++|+|...++ .++...+| +.+......+.+++.++
T Consensus 5 ~~l~~~lG~~~~~~~~~~~~~~iG~vnGLa~t~~GG~il~IE~~~~~g---~g~l~lTG~lg~vmkES~~~A~s~~ks~~ 81 (205)
T pfam05362 5 KNLEKYLGVPRFRYEEAEKEDQVGVVTGLAWTEVGGDLLTIEATIMPG---KGKLTLTGQLGDVMKESAQAALSYVRSRA 81 (205)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 899996599767775344689871999989927997889999999558---88400347557899999999999999999
Q ss_pred ---CC---CCCCCHHHEECC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHC
Q ss_conf ---11---024622210014-56111543258799999999724886887859998742473163407889999999976
Q gi|254780334|r 350 ---NI---KFGNHDVHLNIA-GGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKI 422 (479)
Q Consensus 350 ---~~---~~~~~Di~~nv~-gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~ 422 (479)
++ .+.++|||+|++ |+.++++||+.+|+++||+|++.++|++++++|+|||+|.|+|.||+|+..++.+|+|.
T Consensus 82 ~~~~~~~~~~~~~diHih~p~Ga~pkDGPSAGiai~~Ai~S~l~~~pV~~~iAmTGEIsL~G~VlpIGGv~eKi~aA~ra 161 (205)
T pfam05362 82 EELGIDPDFFEKKDIHIHVPEGATPKDGPSAGVTMATALVSALTGIPVRKDVAMTGEITLRGRVLPIGGLKEKLLAAHRA 161 (205)
T ss_pred HHHCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEEECCHHHHHHHHHHH
T ss_conf 98089932466145999724666677776303899999999994887678879960331356799848999999999993
Q ss_pred CCCEEEECHHHHHHCC------CCCEEEEEECCHHHHHHHHH
Q ss_conf 9989997757653228------58808998383999999861
Q gi|254780334|r 423 GFLSGVFPESAKGECK------IGMLDRQYIKNLSDLVKKIT 458 (479)
Q Consensus 423 G~~~~iiP~~n~~e~~------~~~i~i~~v~~l~e~i~~l~ 458 (479)
|++++++|++|..+.. .++++|++|+++.|+++...
T Consensus 162 Gik~ViiP~~N~~dl~~ip~~i~~~i~i~~V~~i~evl~~al 203 (205)
T pfam05362 162 GIKTVIIPKENEKDLEEIPENVREGLEIIPVEHVDEVLKHAL 203 (205)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
T ss_conf 998899747776679983499976999999693999999974
No 43
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.89 E-value=7.1e-22 Score=179.15 Aligned_cols=164 Identities=16% Similarity=0.234 Sum_probs=142.2
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHH----HHHHHHHCCCCCCCCHHHEECC-CCCCCCCC
Q ss_conf 348997304897411553310115778772477604686665555----8988751111024622210014-56111543
Q gi|254780334|r 297 GTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMI----LAVLEARCNIKFGNHDVHLNIA-GGYRISEP 371 (479)
Q Consensus 297 Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G~d~~rl~~l----lAvl~k~~~~~~~~~Di~~nv~-gG~~i~~p 371 (479)
+.+-++++.|..+..|+||+-+++ |.|....+|++...+.-- -+.+ +.+|+.|..+-|-||++ +++++.++
T Consensus 4 a~v~s~al~Gi~~~~V~VEv~i~~---GlP~f~iVGLpd~av~EsreRVrsAl-~nsg~~~P~~rItVNLaPAdl~K~Gs 79 (506)
T PRK09862 4 SIVHTRAALGVNAPPITVEVHISK---GLPGLTMVGLPETTVKEARDRVRSAI-INSGYEYPAKKITINLAPADLPKEGG 79 (506)
T ss_pred EEEEEEEEECCEEEEEEEEEEECC---CCCCEEEECCCHHHHHHHHHHHHHHH-HHCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 567664230750169999998259---98622783784699999999999999-83899999880899707878888876
Q ss_pred CCCHHHHHHHHHHHCCCCCC--CCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC-CCCEEEEEEC
Q ss_conf 25879999999972488688--78599987424731634078899999999769989997757653228-5880899838
Q gi|254780334|r 372 AADVAVAAALISSILSIPLP--SDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK-IGMLDRQYIK 448 (479)
Q Consensus 372 a~DLaia~ailSs~~~~~~~--~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~-~~~i~i~~v~ 448 (479)
++|||||+|||.+..+++.+ ++++|+|||||||+||||+|+++.+.+|.+.| +++|||.+|..|+. ++++++++++
T Consensus 80 ~fDLpIA~~iL~a~~qi~~~~l~~~~~~GEL~LdG~lr~v~G~lp~~l~a~~~g-~~~ivp~~n~~ea~~v~~~~v~~~~ 158 (506)
T PRK09862 80 RYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSG-RKIIVAKDNEDEVGLINGEGCLIAD 158 (506)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHCCEEEEEECCCCCEEECCCCHHHHHHHHHHCC-CEEEECCCCHHHHCCCCCCCEECCC
T ss_conf 431999999999769998244302488851255860430653689999999759-9899534645665056998287032
Q ss_pred CHHHHHHHHHCCCCCCC
Q ss_conf 39999998614764333
Q gi|254780334|r 449 NLSDLVKKITALQKKDK 465 (479)
Q Consensus 449 ~l~e~i~~l~~~~~~~~ 465 (479)
+|.|+++++.+......
T Consensus 159 ~L~e~~~~l~g~~~~~~ 175 (506)
T PRK09862 159 HLQAVCAFLEGKHALER 175 (506)
T ss_pred CHHHHHHHHCCCCCCCC
T ss_conf 59999998659876788
No 44
>PTZ00035 Rad51; Provisional
Probab=99.89 E-value=2.4e-21 Score=175.25 Aligned_cols=211 Identities=20% Similarity=0.309 Sum_probs=163.8
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCC--HHHHHHHH
Q ss_conf 556663237812488886598578708999549875188999999999850------3981999986463--04788887
Q gi|254780334|r 66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY------KKHRITYVSGEEA--IGQIRLRA 137 (479)
Q Consensus 66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~------~g~~vlYvS~EEs--~~Qi~~Ra 137 (479)
..+.-||+||..+||++||||+..|+++.+.|++|+|||.||+|+|....- .+++|+||+.|-+ ++.+..-|
T Consensus 106 R~~~~~itTGs~~LD~LLGGGiet~sITEi~Ge~gsGKTQlChqLaV~~QLP~~~GG~~GkvvYIDTEgtFrpeRi~qIA 185 (350)
T PTZ00035 106 RQNLIKFTTGSKQLDRLLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRPERIVAIA 185 (350)
T ss_pred HHHCEEECCCCHHHHHHHCCCEECCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 86460357585788876278941385878972798978999999999904857777988627999688998789999999
Q ss_pred HHCCCCC----CCHHEECCCCHHHHHH------HHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH----HHHHHHHHHHH
Q ss_conf 5201577----5100003478899999------99731698289972168766542044556367----99999999999
Q gi|254780334|r 138 QRLNTIN----SSVYIAIETNVEDIIA------TLITNEKPDLVIIDSIQTLWSQTAESSPGTVI----QVRTSVQAMIQ 203 (479)
Q Consensus 138 ~Rl~~~~----~~i~~~~e~~l~~il~------~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs----Qvre~~~~L~~ 203 (479)
+|++++. +++++....+.+.... .++.+.+++++||||+.++|..++.+. |... .+....+.|.+
T Consensus 186 ~~~gld~~~vL~nI~~ara~n~ehq~~ll~~~~~~~~e~~vrLlIVDSitalFR~ef~GR-geLa~RQq~L~~~l~~L~~ 264 (350)
T PTZ00035 186 KRYGLHPTDCLNNIAYAKAYNCDHQTELLIDASAMMADARFALLIVDSATALYRSEYIGR-GELATRQSHLCRFLRGLQR 264 (350)
T ss_pred HHCCCCHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHH
T ss_conf 870999799853322322068788999999999985116758998544566766540570-1489999999999999999
Q ss_pred HHHHCCCEEEEEEEECC-CC---CCC-------CHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEE
Q ss_conf 75307978999863036-65---433-------11457877530278515556665442156763202567651279985
Q gi|254780334|r 204 YAKKNGVAMVLVGHVTK-EG---QIA-------GPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEM 272 (479)
Q Consensus 204 ~AK~~~i~vilighvTK-~G---~iA-------Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m 272 (479)
+|.++|++|+++.||+- .+ .+. |=..+-|.+-+-+||.- .....|+.+.+|...=|-.|. .|..
T Consensus 265 lA~~~nvAVvvTNQV~a~pd~~~~f~g~~~kPiGG~i~aHasttRl~LrK----g~g~~Riakl~dSP~lPe~ea-~F~I 339 (350)
T PTZ00035 265 IADIYGVAVIITNQVVAKVDAMSMFGGHEKIPIGGNIIAHASQTRLYLRK----GRGESRICKIYDSPVLPEGEA-VFAI 339 (350)
T ss_pred HHHHCCCEEEEECCCEECCCCCCCCCCCCCCCCCCEEEEEHHEEEEEEEE----CCCCEEEEEEECCCCCCCCEE-EEEE
T ss_conf 99980956999276166677543357887767644104220038899986----689835899806998987537-8998
Q ss_pred CCCCCEEECC
Q ss_conf 1566311014
Q gi|254780334|r 273 SDKGLQEVSD 282 (479)
Q Consensus 273 ~~~Gl~~v~~ 282 (479)
++.|+....+
T Consensus 340 t~~GI~D~~~ 349 (350)
T PTZ00035 340 TEGGIADYEE 349 (350)
T ss_pred CCCCCCCCCC
T ss_conf 0787679888
No 45
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.89 E-value=2.7e-21 Score=174.90 Aligned_cols=206 Identities=30% Similarity=0.351 Sum_probs=152.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752015775100
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVY 148 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~ 148 (479)
.+|++|||++||++|+||+++|+++||.|+||+|||+|++|++.+.++.|++|+|+|.||++..+...+.+++.+.+...
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~ 81 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYI 81 (260)
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHH
T ss_conf 86568997418888368988997899993899868999999999776269858999920698999999988099778975
Q ss_pred ------E-------EC--------CCC---HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf ------0-------03--------478---89999999731698289972168766542044556367999999999997
Q gi|254780334|r 149 ------I-------AI--------ETN---VEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQY 204 (479)
Q Consensus 149 ------~-------~~--------e~~---l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~ 204 (479)
+ .. ..+ +.+.+...+++.++..+|+||+..++...-+. ...|.+...|.++
T Consensus 82 ~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~-----~~~r~~~~~l~~~ 156 (260)
T COG0467 82 EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDP-----ALVRRILLLLKRF 156 (260)
T ss_pred HCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCH-----HHHHHHHHHHHHH
T ss_conf 44406876312111254201046652289999999999986289889996630776652782-----5789999999987
Q ss_pred HHHCCCEEEEEEEECCCCCCCCH-HHHHHHHHEEEEEECCCCCCCCCCE-EEEEEEECC-CCCCCEEEEEECC-CCCEEE
Q ss_conf 53079789998630366543311-4578775302785155566654421-567632025-6765127998515-663110
Q gi|254780334|r 205 AKKNGVAMVLVGHVTKEGQIAGP-RVIEHMVDAVLYFEGGTRNTQYDYR-ILRSVKNRF-GPTDEIGVFEMSD-KGLQEV 280 (479)
Q Consensus 205 AK~~~i~vilighvTK~G~iAGp-~~LeH~VD~vl~~ege~~~~~~~~R-~Lr~~KNRf-G~t~e~gvf~m~~-~Gl~~v 280 (479)
.++.+++.+++-...-.. .+. ..++++||.++.+....... ...| .++..|-|- -...+.-.|+.++ +|+.-.
T Consensus 157 ~~~~~~t~~~~~~~~~~~--~~~~~~~~~~vdgvI~l~~~~~~~-~~~r~~~~i~k~r~~~~~~~~~~~~i~~g~gi~i~ 233 (260)
T COG0467 157 LKKLGVTSLLTTEAPVEE--RGESGVEEYIVDGVIRLDLKEIEG-GGDRRYLRILKMRGTPHSLKVIPFEITDGEGIVVY 233 (260)
T ss_pred HHHCCEEEEEEECCCCCC--CCCCCCEEEEEEEEEEEEEEECCC-CEEEEEEEEEECCCCCCCCCEEEEEEECCCCEEEE
T ss_conf 650684899997443346--665661421689999997772257-24888999983467335774599998278847993
Q ss_pred CC
Q ss_conf 14
Q gi|254780334|r 281 SD 282 (479)
Q Consensus 281 ~~ 282 (479)
..
T Consensus 234 ~~ 235 (260)
T COG0467 234 PE 235 (260)
T ss_pred CC
T ss_conf 46
No 46
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.89 E-value=3e-21 Score=174.61 Aligned_cols=197 Identities=23% Similarity=0.397 Sum_probs=157.3
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHHC----CCCCCCHHEECC
Q ss_conf 88886598578708999549875188999999999850398199998646--304788887520----157751000034
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE--AIGQIRLRAQRL----NTINSSVYIAIE 152 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE--s~~Qi~~Ra~Rl----~~~~~~i~~~~e 152 (479)
||++||||+.+|.+|-|.||||+|||++||+.|.+.+.+|++|+||..|- |.+.++.-++.- ....+++.++..
T Consensus 1 iD~LLgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~ 80 (223)
T TIGR02237 1 IDELLGGGVERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEV 80 (223)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECC
T ss_conf 95220585120358898758998678999999999986189589996289832899999863058898888415355235
Q ss_pred CCHHHH------HHHHHHCC--CCCEEEECHHHHHHHHHHCCCC-CCHHHHHHHHH---HHHHHHHHCCCEEEEEEEECC
Q ss_conf 788999------99997316--9828997216876654204455-63679999999---999975307978999863036
Q gi|254780334|r 153 TNVEDI------IATLITNE--KPDLVIIDSIQTLWSQTAESSP-GTVIQVRTSVQ---AMIQYAKKNGVAMVLVGHVTK 220 (479)
Q Consensus 153 ~~l~~i------l~~~i~~~--~~~~vVIDSIQtl~~~~~~s~~-GsvsQvre~~~---~L~~~AK~~~i~vilighvTK 220 (479)
.++++. ...+++.+ +.+++|+||+..+|..+.+... -..+-.++.+. .|..+|+++++||+++.||-.
T Consensus 81 ~~f~eQ~~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~~~~~~l~~Ql~~Ll~lArk~~~AVviTNQvy~ 160 (223)
T TIGR02237 81 FDFDEQEVAIQKTSKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQISLNRELARQLTLLLSLARKKDLAVVITNQVYT 160 (223)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 35678999999999998606883314888153345420257860256799999999999999998764997899711588
Q ss_pred C---C--CCC---CHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf 6---5--433---11457877530278515556665442156763202567651279985156631
Q gi|254780334|r 221 E---G--QIA---GPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQ 278 (479)
Q Consensus 221 ~---G--~iA---Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~ 278 (479)
+ | +.. |=.+|+|...+++.||- -++.+.|.....|+|+-+-++..-|..++.|..
T Consensus 161 d~~~gG~~~~~P~GG~~L~h~~K~i~rLE~---~~r~G~R~a~L~kHR~~~EG~~v~FrItd~GI~ 223 (223)
T TIGR02237 161 DVNNGGSETLRPLGGHLLEHWSKVILRLEK---LNRVGRRKATLEKHRSRKEGESVKFRITDDGIE 223 (223)
T ss_pred EECCCCCCEEEECCCHHHHHHHCEEEEEEC---CCCCCCEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 637797320100331134311021335644---789874245665405578997578998227879
No 47
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.88 E-value=8e-21 Score=171.46 Aligned_cols=231 Identities=20% Similarity=0.332 Sum_probs=169.1
Q ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 656403133345566632378124888865-9857870899954987518899999999985039819999864630478
Q gi|254780334|r 55 SISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQI 133 (479)
Q Consensus 55 ~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi 133 (479)
....+++.+....+.+.|+||+..||.+|| ||++.|.++.++|++++|||||+||++++..+.|..|+|+..|.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d-- 96 (325)
T cd00983 19 KGSIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD-- 96 (325)
T ss_pred CCCEEECCCCCCCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCC--
T ss_conf 864589887778865346268199999975899668808999889877799999999999873598399996254259--
Q ss_pred HHHHHHCCCCCCCHHEECCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHH-HHCCCCCCH---HHHHHHHHH---HHH
Q ss_conf 8887520157751000034788999---999973169828997216876654-204455636---799999999---999
Q gi|254780334|r 134 RLRAQRLNTINSSVYIAIETNVEDI---IATLITNEKPDLVIIDSIQTLWSQ-TAESSPGTV---IQVRTSVQA---MIQ 203 (479)
Q Consensus 134 ~~Ra~Rl~~~~~~i~~~~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~-~~~s~~Gsv---sQvre~~~~---L~~ 203 (479)
..+++.+|++.+++++..+...|+. ++.+++....+++|+||+.++... ++++..+.. .|.|-.+.. |..
T Consensus 97 ~~~a~~lGVD~~~l~~~qp~~~Eq~l~i~~~li~s~~~dliViDSvaal~p~~E~e~~~~d~~vg~~ArlmskalRklt~ 176 (325)
T cd00983 97 PVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 176 (325)
T ss_pred HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999809984675896663899999999997515887679981511236578876011321143899999999999998
Q ss_pred HHHHCCCEEEEEEEE-CCCCCC-------CCHHHHHHHHHEEEEEECCC--CCC----CCCCEEEEEEEECCCCCCCEEE
Q ss_conf 753079789998630-366543-------31145787753027851555--666----5442156763202567651279
Q gi|254780334|r 204 YAKKNGVAMVLVGHV-TKEGQI-------AGPRVIEHMVDAVLYFEGGT--RNT----QYDYRILRSVKNRFGPTDEIGV 269 (479)
Q Consensus 204 ~AK~~~i~vilighv-TK~G~i-------AGp~~LeH~VD~vl~~ege~--~~~----~~~~R~Lr~~KNRfG~t~e~gv 269 (479)
.+.+.++++++|.|+ .|-|.+ .|=+.|.|...+-+.+--.. .+. .... ...++|||+++-+...-
T Consensus 177 ~l~k~~~~lIfiNQ~R~kiG~mfg~pe~t~GG~Alkf~aSvrl~l~k~~~ik~~~~~iG~~i-kvkv~KnK~a~P~r~a~ 255 (325)
T cd00983 177 SINKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRT-KVKVVKNKVAPPFKTAE 255 (325)
T ss_pred HHCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCCCCCCCCCEEEEE-EEEEEECCCCCCCCEEE
T ss_conf 75337807999554322157756898537997505512113899976131257885077699-99999788689986799
Q ss_pred EEEC-CCCCEEECCHHHHHH
Q ss_conf 9851-566311014045551
Q gi|254780334|r 270 FEMS-DKGLQEVSDPSKIFL 288 (479)
Q Consensus 270 f~m~-~~Gl~~v~~ps~~fl 288 (479)
|.+. ++|+..+.+--.+..
T Consensus 256 ~~i~yg~GId~~~elldla~ 275 (325)
T cd00983 256 FDILFGEGISREGEIIDLAV 275 (325)
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 99467876342532999998
No 48
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=99.88 E-value=1.4e-20 Score=169.80 Aligned_cols=231 Identities=20% Similarity=0.326 Sum_probs=166.0
Q ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 656403133345566632378124888865-9857870899954987518899999999985039819999864630478
Q gi|254780334|r 55 SISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQI 133 (479)
Q Consensus 55 ~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi 133 (479)
...++++++....+.+.||||...||.+|| ||++.|.++.|+|++++|||||++|++++..+.|..|+|+..|.+..
T Consensus 16 ~~~i~~~~~~~~~~~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~d-- 93 (322)
T pfam00154 16 KGSIMRLGDKTVEDVEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD-- 93 (322)
T ss_pred CCCEEECCCCCCCCCCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCC--
T ss_conf 874588888777775446158089999875899778708999889877789999999999973499389985366059--
Q ss_pred HHHHHHCCCCCCCHHEECCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHH-HHCCCCCC--H-HHHHHHHH---HHHH
Q ss_conf 8887520157751000034788999---999973169828997216876654-20445563--6-79999999---9999
Q gi|254780334|r 134 RLRAQRLNTINSSVYIAIETNVEDI---IATLITNEKPDLVIIDSIQTLWSQ-TAESSPGT--V-IQVRTSVQ---AMIQ 203 (479)
Q Consensus 134 ~~Ra~Rl~~~~~~i~~~~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~-~~~s~~Gs--v-sQvre~~~---~L~~ 203 (479)
..+++.+|++.+++++......|+. ++.+++....+++|+||+.++... +++...+. + .|.|-.+. .|..
T Consensus 94 ~~~a~~lGVD~~~l~~~qpd~~Eqal~i~~~li~~~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~ 173 (322)
T pfam00154 94 PVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG 173 (322)
T ss_pred HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88999809880253897788399999999998537997659982534567688875243223213579999999999999
Q ss_pred HHHHCCCEEEEEEEE-CCCCCC-------CCHHHHHHHHHEEEEEECC--CCCC----CCCCEEEEEEEECCCCCCCEEE
Q ss_conf 753079789998630-366543-------3114578775302785155--5666----5442156763202567651279
Q gi|254780334|r 204 YAKKNGVAMVLVGHV-TKEGQI-------AGPRVIEHMVDAVLYFEGG--TRNT----QYDYRILRSVKNRFGPTDEIGV 269 (479)
Q Consensus 204 ~AK~~~i~vilighv-TK~G~i-------AGp~~LeH~VD~vl~~ege--~~~~----~~~~R~Lr~~KNRfG~t~e~gv 269 (479)
.+.+.++++++|.|+ .|-|.+ .|=+.|.|...+.+.+--. ..+. ....| ..++|||+++-....-
T Consensus 174 ~l~k~~~~~IfiNQ~R~kiG~mfg~pe~t~GG~Alkf~aSvri~l~k~~~iK~g~~~vG~~i~-~kvvKnK~a~P~~~ae 252 (322)
T pfam00154 174 NISKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGEEVIGNRTK-VKVVKNKVAPPFKQAE 252 (322)
T ss_pred HHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEEECCCCCCCCCEEEEEE-EEEEECCCCCCCCEEE
T ss_conf 973058549997655111466469985477864254110037877650101467863369999-9998367489986799
Q ss_pred EEEC-CCCCEEECCHHHHHH
Q ss_conf 9851-566311014045551
Q gi|254780334|r 270 FEMS-DKGLQEVSDPSKIFL 288 (479)
Q Consensus 270 f~m~-~~Gl~~v~~ps~~fl 288 (479)
|.+. ++|+..+.+--.+..
T Consensus 253 ~~i~y~~GId~~~~lldla~ 272 (322)
T pfam00154 253 FDIMYGEGISKEGELIDLGV 272 (322)
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99615887664325999999
No 49
>PRK09354 recA recombinase A; Provisional
Probab=99.88 E-value=1.6e-20 Score=169.23 Aligned_cols=225 Identities=21% Similarity=0.335 Sum_probs=165.1
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 6656403133345566632378124888865-985787089995498751889999999998503981999986463047
Q gi|254780334|r 54 HSISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ 132 (479)
Q Consensus 54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q 132 (479)
....+++|.+....+.+.||||.-.||..|| ||+++|.++.|.|++++|||||+||++++..+.|..|+|+..|.+..
T Consensus 23 g~g~im~l~~~~~~~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald- 101 (350)
T PRK09354 23 GKGSIMRLGDDESMDVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD- 101 (350)
T ss_pred CCCCEEECCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-
T ss_conf 9874477788888776654477178999875899678708999889877799999999999997599479996000279-
Q ss_pred HHHHHHHCCCCCCCHHEECCCCHHH---HHHHHHHCCCCCEEEECHHHHHHH-HHHCCCCCC--H-HHHHHHHHHHHH--
Q ss_conf 8888752015775100003478899---999997316982899721687665-420445563--6-799999999999--
Q gi|254780334|r 133 IRLRAQRLNTINSSVYIAIETNVED---IIATLITNEKPDLVIIDSIQTLWS-QTAESSPGT--V-IQVRTSVQAMIQ-- 203 (479)
Q Consensus 133 i~~Ra~Rl~~~~~~i~~~~e~~l~~---il~~~i~~~~~~~vVIDSIQtl~~-~~~~s~~Gs--v-sQvre~~~~L~~-- 203 (479)
...++++|++.+++++......|+ +++.+++....+++||||+.++.. .++++..|. + .|.|-.+..|..
T Consensus 102 -~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~mgd~~vG~qARlmSqalRKlt 180 (350)
T PRK09354 102 -PVYAKKLGVDIDNLLVSQPDTGEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLT 180 (350)
T ss_pred -HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -8899984977157178568679999999999985488418998253345768887313354226389999999999999
Q ss_pred -HHHHCCCEEEEEEEE-CCCCCCC-------CHHHHHHHHHEEEEEECCC--CCCC--CCCE-EEEEEEECCCCCCCEEE
Q ss_conf -753079789998630-3665433-------1145787753027851555--6665--4421-56763202567651279
Q gi|254780334|r 204 -YAKKNGVAMVLVGHV-TKEGQIA-------GPRVIEHMVDAVLYFEGGT--RNTQ--YDYR-ILRSVKNRFGPTDEIGV 269 (479)
Q Consensus 204 -~AK~~~i~vilighv-TK~G~iA-------Gp~~LeH~VD~vl~~ege~--~~~~--~~~R-~Lr~~KNRfG~t~e~gv 269 (479)
...++++++++|.|+ .|-|.+- |=+.|.+...+-|.+--.. .+.+ -+-| ...++|||+.|-....-
T Consensus 181 ~~i~ks~t~~IfINQlR~kiGvmfG~petT~GG~ALkFyaSvRl~irr~~~iK~g~~~iG~~ikvkvvKNK~apPfk~ae 260 (350)
T PRK09354 181 GNINKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFKQAE 260 (350)
T ss_pred HHHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEE
T ss_conf 99855782899974323214660689877776330012122888412356313588358889999998568689975699
Q ss_pred EEEC-CCCCEEE
Q ss_conf 9851-5663110
Q gi|254780334|r 270 FEMS-DKGLQEV 280 (479)
Q Consensus 270 f~m~-~~Gl~~v 280 (479)
|.+. .+|+.-.
T Consensus 261 ~dI~yg~GI~~~ 272 (350)
T PRK09354 261 FDIMYGEGISRE 272 (350)
T ss_pred EEEECCCCCCCH
T ss_conf 998717766725
No 50
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.87 E-value=3.4e-21 Score=174.19 Aligned_cols=166 Identities=24% Similarity=0.244 Sum_probs=128.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH------HEEC----------CC--
Q ss_conf 89995498751889999999998503981999986463047888875201577510------0003----------47--
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV------YIAI----------ET-- 153 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i------~~~~----------e~-- 153 (479)
.+||.|+||+|||||++|++.+.+++|++|+|+|+||++.++..++.+++.+.+.. .+.. ..
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf 91587689999999999999999876997899995079999999999839985898645856899626200220333236
Q ss_pred -CHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CCCCCCCHHHHH
Q ss_conf -889999999731698289972168766542044556367999999999997530797899986303-665433114578
Q gi|254780334|r 154 -NVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVT-KEGQIAGPRVIE 231 (479)
Q Consensus 154 -~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvT-K~G~iAGp~~Le 231 (479)
.+-+.+...+++.+|+++||||++.++... ..+.|.....|....|+.+++++++.+.+ ..+...++..++
T Consensus 81 ~~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~-------~~~~~~~~~~l~~~l~~~~~t~ll~~e~~~~~~~~~~~~~~~ 153 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLME-------QSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVE 153 (187)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHHHHCC-------HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEE
T ss_conf 7899999999998499899994868875256-------666899999999999976996899997425667667888477
Q ss_pred HHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 77530278515556665442156763202567651
Q gi|254780334|r 232 HMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDE 266 (479)
Q Consensus 232 H~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e 266 (479)
|++|.|+.|.... ......|.|+..|+| |+.++
T Consensus 154 ~l~DgiI~L~~~~-~~~~~~R~l~I~KmR-gs~H~ 186 (187)
T cd01124 154 YLVDGVIRLRLDE-EGGRLRRSLSVVKMR-GGPHD 186 (187)
T ss_pred EEEEEEEEEEEEE-CCCEEEEEEEEEECC-CCCCC
T ss_conf 9978999997880-499799999999858-99899
No 51
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.87 E-value=4.3e-21 Score=173.42 Aligned_cols=150 Identities=19% Similarity=0.341 Sum_probs=116.8
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHH--CCCC-----
Q ss_conf 23781248888659857870899954987518899999999985-039819999864630478888752--0157-----
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQR--LNTI----- 143 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~R--l~~~----- 143 (479)
++||+++||+++ ||+.||.+++|+|.||+|||+|+++++.+++ +.|.+|+|+|.|++..++..|..- .+++
T Consensus 2 IpTG~~~lD~~~-gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~~~~~R~~a~~~~v~~~~i~ 80 (186)
T pfam03796 2 LPTGFTDLDQLT-GGLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAEQLAERLLSSESRISSSKLR 80 (186)
T ss_pred CCCCCHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 388807788642-6988881799996799987999999999999970996687547552999999999986267655541
Q ss_pred --------------------CCCHHEEC--CCCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf --------------------75100003--47889999---999731698289972168766542044556367999999
Q gi|254780334|r 144 --------------------NSSVYIAI--ETNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSV 198 (479)
Q Consensus 144 --------------------~~~i~~~~--e~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~ 198 (479)
..++++.. ..+++++. ..+....+++++|||++|.+..+..........++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~~~~~~~r~~~v~~i~ 160 (186)
T pfam03796 81 SGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSKASKSENRQQEISEIS 160 (186)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 25121679999999999985398688479999899999999999985599889974898636778887755999999999
Q ss_pred HHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 999997530797899986303665
Q gi|254780334|r 199 QAMIQYAKKNGVAMVLVGHVTKEG 222 (479)
Q Consensus 199 ~~L~~~AK~~~i~vilighvTK~G 222 (479)
..|..+||+++++++.+.|+|++.
T Consensus 161 ~~Lk~lA~e~~i~ii~~sQlNR~~ 184 (186)
T pfam03796 161 RSLKALAKELNIPVIALSQLSRAV 184 (186)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 999999999799189972257533
No 52
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.86 E-value=6e-20 Score=165.06 Aligned_cols=198 Identities=21% Similarity=0.236 Sum_probs=143.0
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 66632378124888865985787089995498751889999999998503981999986463047888875201577510
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV 147 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i 147 (479)
+.-|+...-++||+.||||+++||++|+.|+||+|||+|+.|++....++|++|+|+|.||+..++....+.++.+-...
T Consensus 2 ~~~~~~~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~ 81 (230)
T PRK08533 2 KLAKIELDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKK 81 (230)
T ss_pred CCCCEECCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHH
T ss_conf 75401057135788717898898489998689987899999999999878986999994389999999999869981799
Q ss_pred H------EEC-------CCCHHHHHHH---HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 0------003-------4788999999---97316982899721687665420445563679999999999975307978
Q gi|254780334|r 148 Y------IAI-------ETNVEDIIAT---LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVA 211 (479)
Q Consensus 148 ~------~~~-------e~~l~~il~~---~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~ 211 (479)
+ +.+ ....++.+.. .....+.+++||||+.+++..+.+ ..++++....|.+++....+.
T Consensus 82 ~~~G~l~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~-----~~~~~~~~~~lk~l~s~gktI 156 (230)
T PRK08533 82 LISGKLLYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDAS-----EVQIRDLMAFFKRISSLNKVI 156 (230)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCC-----HHHHHHHHHHHHHHHHCCCEE
T ss_conf 757967999613433540457899999973266437989999053188516777-----899999999999998589889
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECC--CCCCCEEEEEEC
Q ss_conf 99986303665433114578775302785155566654421567632025--676512799851
Q gi|254780334|r 212 MVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRF--GPTDEIGVFEMS 273 (479)
Q Consensus 212 vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRf--G~t~e~gvf~m~ 273 (479)
++-+..-.-+.... -.+++.+|+++.++-... .+.--|.+...|-|. +++...--|+..
T Consensus 157 ilTv~p~~~~e~~l--~~lrs~aDv~i~L~~~~v-Gg~~~r~i~V~K~~ga~~~~~~~I~F~V~ 217 (230)
T PRK08533 157 ILTANPKELPESVL--LILRTASTILIRLEVKVF-GGDLKNSAKIVKYNMAKGSFQKIIPFRVE 217 (230)
T ss_pred EEEECCCCCCHHHH--HHHHEEEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCCCEEEEEEC
T ss_conf 99956331362454--420410489999873610-98899999999844898777864789980
No 53
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=99.84 E-value=6.3e-21 Score=172.23 Aligned_cols=158 Identities=22% Similarity=0.354 Sum_probs=135.6
Q ss_pred CCCCCEEEEEEEECCCCCCCCEEEEECCCH-------HHHHHHHHHHHHHCCCCCCCCHHHEECC-CCCCCCCCCCCHHH
Q ss_conf 897411553310115778772477604686-------6655558988751111024622210014-56111543258799
Q gi|254780334|r 306 GTRALLVEIQSLVVPTSLGMPRRTVVGWDS-------SRLAMILAVLEARCNIKFGNHDVHLNIA-GGYRISEPAADVAV 377 (479)
Q Consensus 306 G~r~~lvEvQALv~~~~~~~p~R~~~G~d~-------~rl~~llAvl~k~~~~~~~~~Di~~nv~-gG~~i~~pa~DLai 377 (479)
|--+.+|+|+.=++. |.|--+.+|++- +|+- +-| +.+++.|..+-|.||++ +|+++.||++||+|
T Consensus 8 G~~a~~v~vEvdis~---G~pg~~~VGLp~~~vkEsreRVk---sAl-~Ns~F~fP~~rI~iNLAPAdl~KeG~~FDLpI 80 (505)
T TIGR00368 8 GVEAPLVTVEVDISK---GLPGITIVGLPETTVKESRERVK---SAL-KNSGFKFPAKRITINLAPADLPKEGGRFDLPI 80 (505)
T ss_pred CCCCCEEEEEEEECC---CCCCCEEECCCCCCHHHHHHHHH---HHH-HHCCCCCCCCEEEEECCCCCCCCCCCCCCHHH
T ss_conf 636403479887307---78721343388631056678999---998-61576688540166538888766788863389
Q ss_pred HHHHHHHHCCCC--CCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC-CCCEEEEEECCHHHHH
Q ss_conf 999999724886--8878599987424731634078899999999769989997757653228-5880899838399999
Q gi|254780334|r 378 AAALISSILSIP--LPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK-IGMLDRQYIKNLSDLV 454 (479)
Q Consensus 378 a~ailSs~~~~~--~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~-~~~i~i~~v~~l~e~i 454 (479)
|++||.+..++. ...++.|+||+.|||.+|.|.|+.|.+.+|++.|.+.+|||++|..|+. ++|.++|.++||+|++
T Consensus 81 AI~ilaaseq~da~~L~~yl~lGEL~LdG~lR~i~gvlP~~~~A~k~~~~~~iVp~~N~~EaSlv~G~~~y~~~~L~~vv 160 (505)
T TIGR00368 81 AIGILAASEQLDAKKLDEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKFIIVPKENAEEASLVDGLNVYGADHLKEVV 160 (505)
T ss_pred HHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEECCCCEEHHHHHHHHH
T ss_conf 99999986333043144011001133247511045689999999865876776216675520266387402047489999
Q ss_pred HHHH--CCCCCCCCCCCC
Q ss_conf 9861--476433335432
Q gi|254780334|r 455 KKIT--ALQKKDKKTVHK 470 (479)
Q Consensus 455 ~~l~--~~~~~~~~~~~~ 470 (479)
++|. +.+..+..+...
T Consensus 161 ~fl~ql~~~~L~~~t~~~ 178 (505)
T TIGR00368 161 KFLEQLGSEKLPPRTNTK 178 (505)
T ss_pred HHHHHHCCCCCCCCCCCC
T ss_conf 999762310177754555
No 54
>PRK07773 replicative DNA helicase; Validated
Probab=99.84 E-value=1.1e-19 Score=163.29 Aligned_cols=266 Identities=21% Similarity=0.275 Sum_probs=172.2
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC
Q ss_conf 5666323781248888659857870899954987518899999999985-03981999986463047888875--20157
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI 143 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~ 143 (479)
....-++||+..||+++ |||.+|.++.|+|.||+|||+|+|++|.+++ ..+.+|+++|.|+|.+|+.+|.- .-+++
T Consensus 181 ~~l~GvpTG~~~ld~~~-~g~~~~~l~i~a~rp~~GKt~~~~~~a~~~a~~~~~~v~~FSLEMs~~ql~~Rlls~~~~i~ 259 (868)
T PRK07773 181 GLAPGVPTGFYDLDEMT-NGLHPGQMIIVAARPGVGKSTLGLDFARSCSIRHRLASVIFSLEMSKEEIVMRLLSAEAKIK 259 (868)
T ss_pred CCCCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 99878688979998763-18887767999828977777899999999998659965897305678899999998760787
Q ss_pred -------------------------CCCHHEECC--CCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf -------------------------751000034--788999---99997316982899721687665420445563679
Q gi|254780334|r 144 -------------------------NSSVYIAIE--TNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 144 -------------------------~~~i~~~~e--~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
..++|+... ..+.++ ...+-...+.+++|||++|.|..+. ....-+.+
T Consensus 260 ~~~lr~G~l~~~~~~~~~~a~~~l~~~pl~IdDtp~isi~eirakaRrlk~~~~l~lIvvDYLQLm~~~~--~~~~R~qe 337 (868)
T PRK07773 260 LSDMRSGRMSDDDWTRLARRMSEISEAPLFIDDSPNLTMMEIRSKARRLQQKANLKLIVVDYLQLMTSGK--KYESRQQE 337 (868)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCC--CCCCHHHH
T ss_conf 7664168889899999999999986198888479999999999999998652699889996155247898--87629899
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC-CCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEE-------EEECCCCCC
Q ss_conf 99999999997530797899986303665-4331145787753027851555666544215676-------320256765
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEG-QIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRS-------VKNRFGPTD 265 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G-~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~-------~KNRfG~t~ 265 (479)
+-+++..|+.+||+.++||+..-|++..= +....+.+.+-..--.++.|+ -|+.++ +..-.|..+
T Consensus 338 vs~isr~LK~lAkeL~vPVialsQl~R~vE~R~~krP~lsdLresgc~~~d-------~~v~~ad~~~~~~~~~lv~~~~ 410 (868)
T PRK07773 338 VSEFSRHLKLLAKELEVPVIALSQLNRGPEQRTDKRPMLSDLRESGCLTAS-------TRILRADTGAEVAIGELMRSGE 410 (868)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCC-------CEEEECCCCCCCCHHHHHHCCC
T ss_conf 999989999999875897898710365542246777301003332785888-------2488647887233999872447
Q ss_pred CEEEEEECCCCCEEECCHHHHHHCCCCC------------CCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC-
Q ss_conf 1279985156631101404555114766------------767348997304897411553310115778772477604-
Q gi|254780334|r 266 EIGVFEMSDKGLQEVSDPSKIFLSDRDS------------TSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG- 332 (479)
Q Consensus 266 e~gvf~m~~~Gl~~v~~ps~~fl~~~~~------------~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G- 332 (479)
---+|.+.+.+..+-..++..|-+++.+ ...+++-+.+.+|.+|+ ..|..-...+.||+.-..
T Consensus 411 ~~~~~~l~~~~~~~~~~~~~v~~~G~k~v~~l~t~~gr~i~~t~~H~~lt~~gw~~l----~~L~~GdrIAvPr~lp~~~ 486 (868)
T PRK07773 411 RPMVWSLDERLRMVARPMSNVFPTGRKEVFRLRTASGREVEATGNHPFLTIDGWKPL----DELSVGDRIALPRRVPEPI 486 (868)
T ss_pred CCEEEEECCCCEEEECCCCCEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEH----HHCCCCCHHCCCCCCCCCC
T ss_conf 741578657751875033320005653489998535528997357745452345687----5558733110500068864
Q ss_pred ----CCHHHHHHHHHHHHH
Q ss_conf ----686665555898875
Q gi|254780334|r 333 ----WDSSRLAMILAVLEA 347 (479)
Q Consensus 333 ----~d~~rl~~llAvl~k 347 (479)
++...+.++ |.|=.
T Consensus 487 ~~~~l~d~ev~lL-a~LlG 504 (868)
T PRK07773 487 DTQRMTDSELILL-GHLIG 504 (868)
T ss_pred CCCCCCHHHHHHH-HHHHC
T ss_conf 6677977888898-98760
No 55
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.81 E-value=8e-19 Score=156.88 Aligned_cols=165 Identities=19% Similarity=0.321 Sum_probs=137.8
Q ss_pred CCCEEEEEEECCCC-CCEEEEEEEECCCCC-CCCEEEEEC----CCHHHHHHHHHHHHHHCCCCCCCCHHHEECCC-CCC
Q ss_conf 67348997304897-411553310115778-772477604----68666555589887511110246222100145-611
Q gi|254780334|r 295 SPGTAVFAGIEGTR-ALLVEIQSLVVPTSL-GMPRRTVVG----WDSSRLAMILAVLEARCNIKFGNHDVHLNIAG-GYR 367 (479)
Q Consensus 295 ~~Gs~v~~~~eG~r-~~lvEvQALv~~~~~-~~p~R~~~G----~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~g-G~~ 367 (479)
..|-+-+.+.-|.+ .+.++|.|-++++.. +...-..+| +....+..+.|++.|+.+.+..++|+|+++.+ .-.
T Consensus 427 ~VGqVNGLAV~G~~~G~~~pI~a~vt~~~~~g~g~vi~tg~lg~Ia~~aV~~vsa~lkk~~~~~~~~~~~~I~FeQsY~g 506 (637)
T PRK13765 427 EVGRVNGLAVMGGDSGIVLPIMAEVTPAQSKGEGKIIATGKLKEIAKEAVQNVSAIIKKFTGKDISNYDIHIQFVGTYEG 506 (637)
T ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
T ss_conf 67898668996588886011578998655688860897241067789888789999999855787666179998305788
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHC-----CCCCE
Q ss_conf 1543258799999999724886887859998742473163407889999999976998999775765322-----85880
Q gi|254780334|r 368 ISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGEC-----KIGML 442 (479)
Q Consensus 368 i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~-----~~~~i 442 (479)
++++|+.+|+++||+||+.++|+.++++++|+|++.|+|.||+|+..+|..|.+.|++++|||+.|..+. ..+.+
T Consensus 507 VeGDSAS~Ae~~AliSAL~~iPi~Q~~AvTGSl~q~G~VqpIGGVneKIEaa~~~G~k~ViIP~sN~~dv~~~~~~~~~i 586 (637)
T PRK13765 507 VEGDSASVSIATAVISALENIPVDQSVAMTGSLSVRGDVLPVGGVTYKIEAAAEAGIKKVIIPKSNEKDVLIEKEYEDKI 586 (637)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCE
T ss_conf 67860789999999998747984244357764236773454367079999999808866872400034343207650846
Q ss_pred EEEEECCHHHHHHHHHC
Q ss_conf 89983839999998614
Q gi|254780334|r 443 DRQYIKNLSDLVKKITA 459 (479)
Q Consensus 443 ~i~~v~~l~e~i~~l~~ 459 (479)
+|++|+||.|++++..-
T Consensus 587 ~iipv~~i~evl~~al~ 603 (637)
T PRK13765 587 EIIPVSTISEVLEHALV 603 (637)
T ss_pred EEEECCCHHHHHHHHHC
T ss_conf 99973739999998744
No 56
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.4e-18 Score=153.41 Aligned_cols=198 Identities=21% Similarity=0.329 Sum_probs=144.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH---------
Q ss_conf 66323781248888659857870899954987518899999999985039-81999986463047888875---------
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK-HRITYVSGEEAIGQIRLRAQ--------- 138 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g-~~vlYvS~EEs~~Qi~~Ra~--------- 138 (479)
..-++||+..||..++ |+.+|.++++++.||+|||+|++.+|.+++... .+|+++|.|++.+|+.+|.-
T Consensus 176 ~~Gi~tgf~~LD~~t~-G~~~~dLiilAaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~ 254 (435)
T COG0305 176 LIGVPTGFTDLDEITS-GFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSESGIESS 254 (435)
T ss_pred CCCCCCCCHHHHHHHC-CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCHH
T ss_conf 8514468345677733-774677799716899975899999999999855897599982679999999753401154510
Q ss_pred --HCCC----------------CCCCHHEECC--CCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf --2015----------------7751000034--788999---9999731698289972168766542044556367999
Q gi|254780334|r 139 --RLNT----------------INSSVYIAIE--TNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 139 --Rl~~----------------~~~~i~~~~e--~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
|.|. ...++|+... ..+.++ ...+..+.+.++++||++|-|...... .....++.
T Consensus 255 kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~liviDYLQLm~~~~~~--~~R~qevs 332 (435)
T COG0305 255 KLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKS--ENRKQEVS 332 (435)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC--CHHHHHHH
T ss_conf 0212542689999999999987617854337888878889999998887459738998865411367764--12688999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCCCCCC----CCCEEEEEEEEC
Q ss_conf 999999997530797899986303665-----------43311457877530278515556665----442156763202
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGTRNTQ----YDYRILRSVKNR 260 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~~~~~----~~~R~Lr~~KNR 260 (479)
+.+..|+.+||+.++|++..-|+++.= .+=.+..+|-..|.|+.+--+.+.+. .+.=-+-.-|||
T Consensus 333 eISr~LK~LAkEL~vPvIAlSQLsR~~E~R~dkrP~lSDLRESGsIEQDADiVmflyRde~y~~~~~~~g~aeiIi~K~R 412 (435)
T COG0305 333 EISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEAYLKDTPDRGEAEVIVAKNR 412 (435)
T ss_pred HHHHHHHHHHHHHCCCEEEHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHCCEEEEEECHHHCCCCCCCCCEEEEEEEECC
T ss_conf 99999999998748808864452441121145687555675578436657789998142322677788862899987436
Q ss_pred CCCCCCEEE
Q ss_conf 567651279
Q gi|254780334|r 261 FGPTDEIGV 269 (479)
Q Consensus 261 fG~t~e~gv 269 (479)
-||++.+-+
T Consensus 413 nGp~GtV~l 421 (435)
T COG0305 413 NGPTGTVKL 421 (435)
T ss_pred CCCCCEEEE
T ss_conf 898745999
No 57
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.79 E-value=7.5e-18 Score=149.77 Aligned_cols=209 Identities=23% Similarity=0.373 Sum_probs=156.8
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---------------CC-CEEEEECCC
Q ss_conf 45566632378124888865985787089995498751889999999998503---------------98-199998646
Q gi|254780334|r 65 SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK---------------KH-RITYVSGEE 128 (479)
Q Consensus 65 ~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~---------------g~-~vlYvS~EE 128 (479)
......||+||+++||.+||||+..-++|.+.|+-|+|||.+|.|+|-++.-. +. +++||+.|.
T Consensus 71 rR~~v~kitTgs~~LDeLLGGGiETqaiTE~~GEFGSGKTQ~~HqLAVnVQlP~flfydeeave~GGL~gp~av~IDTEn 150 (333)
T TIGR02236 71 RRKSVGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEFLFYDEEAVEKGGLEGPKAVYIDTEN 150 (333)
T ss_pred HHHCCCEEECCCHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCEEEEEECCC
T ss_conf 87207504448636765607960000588877100786578766765532287112101100014776787689985597
Q ss_pred CH--HHHHHHHH--HCC-------CCC----CCHHEECCCCHHH------HHHHHHHCC-----CCCEEEECHHHHHHHH
Q ss_conf 30--47888875--201-------577----5100003478899------999997316-----9828997216876654
Q gi|254780334|r 129 AI--GQIRLRAQ--RLN-------TIN----SSVYIAIETNVED------IIATLITNE-----KPDLVIIDSIQTLWSQ 182 (479)
Q Consensus 129 s~--~Qi~~Ra~--Rl~-------~~~----~~i~~~~e~~l~~------il~~~i~~~-----~~~~vVIDSIQtl~~~ 182 (479)
+. +.|..-|+ .-+ ++. +++|+....+-+. -+..++++. +.++|||||+.+-|.+
T Consensus 151 TFRPERI~qmA~GL~~g~l~~~melD~~evL~nI~vARAyNS~HQmllve~~~~li~e~~~~~~pv~L~~VDSLtsHFRa 230 (333)
T TIGR02236 151 TFRPERIEQMAKGLARGTLQAAMELDPDEVLKNIYVARAYNSNHQMLLVEKAKELIKELKNEDKPVRLLIVDSLTSHFRA 230 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 98625799999863111366653278777720304778526314799999999999730157994689998121002236
Q ss_pred HHCCCCCCH---HH-HHHHHHHHHHHHHHCCCEEEEEEEE-CCCCCCCC-------HHHHHHHHHEEEEEECCCCCCCCC
Q ss_conf 204455636---79-9999999999753079789998630-36654331-------145787753027851555666544
Q gi|254780334|r 183 TAESSPGTV---IQ-VRTSVQAMIQYAKKNGVAMVLVGHV-TKEGQIAG-------PRVIEHMVDAVLYFEGGTRNTQYD 250 (479)
Q Consensus 183 ~~~s~~Gsv---sQ-vre~~~~L~~~AK~~~i~vilighv-TK~G~iAG-------p~~LeH~VD~vl~~ege~~~~~~~ 250 (479)
++.++ |.. .| +-...+.|.++|--+|++|+++.|| -|+..|=| =.+|=|-.-.=+|+-- +...
T Consensus 231 EY~GR-g~LA~RQQKLnkHlh~L~~ladlyn~aV~VTNQV~A~PDaFFG~Pt~piGGhilgH~AT~R~yLrK----sk~~ 305 (333)
T TIGR02236 231 EYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTKPIGGHILGHAATFRLYLRK----SKGD 305 (333)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEE----CCCC
T ss_conf 76450-247889869878899886541402178998556122787344869877677154127856899996----4798
Q ss_pred CEEEEEEEECCCCCCCEEEEEECCCCCEE
Q ss_conf 21567632025676512799851566311
Q gi|254780334|r 251 YRILRSVKNRFGPTDEIGVFEMSDKGLQE 279 (479)
Q Consensus 251 ~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~ 279 (479)
.|+.|.+=...=|-+|. ||..|+.|+..
T Consensus 306 kRiarl~DsP~LPeGEa-vfriTe~Gi~D 333 (333)
T TIGR02236 306 KRIARLVDSPHLPEGEA-VFRITEKGIED 333 (333)
T ss_pred EEEEEEECCCCCCCCCE-EEEEECCCCCC
T ss_conf 14899873898988306-88674478899
No 58
>PRK09519 recA recombinase A; Reviewed
Probab=99.78 E-value=1.1e-17 Score=148.71 Aligned_cols=172 Identities=27% Similarity=0.360 Sum_probs=142.0
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 6656403133345566632378124888865-985787089995498751889999999998503981999986463047
Q gi|254780334|r 54 HSISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ 132 (479)
Q Consensus 54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q 132 (479)
....+++|.+....+.+-||||.-.||-.|| ||+++|.++.|.|+..+|||||+||+.++..+.|..+.|+..|.+...
T Consensus 23 GkGsiM~Lg~~~~~~v~~IsTGSl~LD~ALGiGG~PrGRIvEIyGpESSGKTTLALH~IAeaQK~GG~aAfIDAEhAlDp 102 (790)
T PRK09519 23 GKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP 102 (790)
T ss_pred CCCCEEECCCCCCCCCCEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 88525777887777654450461678887616884660499987897765899999999999853997999952002599
Q ss_pred HHHHHHHCCCCCCCHHEECCCCHHH---HHHHHHHCCCCCEEEECHHHHHHH-HHHCCCCCC--H-HHHHHHHHHHHHH-
Q ss_conf 8888752015775100003478899---999997316982899721687665-420445563--6-7999999999997-
Q gi|254780334|r 133 IRLRAQRLNTINSSVYIAIETNVED---IIATLITNEKPDLVIIDSIQTLWS-QTAESSPGT--V-IQVRTSVQAMIQY- 204 (479)
Q Consensus 133 i~~Ra~Rl~~~~~~i~~~~e~~l~~---il~~~i~~~~~~~vVIDSIQtl~~-~~~~s~~Gs--v-sQvre~~~~L~~~- 204 (479)
..|+.+|++.+++++.....-|+ +.+.+++....+++||||+.++.- .++++..|. + .|.|-.+..|..+
T Consensus 103 --~yA~~LGVdld~LLisQPdtGEqALeIae~LIrSgavDlIVVDSVAALvPKaEieGemgD~~vGlQARLMSqALRKLT 180 (790)
T PRK09519 103 --DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMT 180 (790)
T ss_pred --HHHHHHCCCHHHCEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf --999983957678068579808899999999985489548998053456878886164566428899999999999998
Q ss_pred --HHHCCCEEEEEEEE-CCCCCCCCH
Q ss_conf --53079789998630-366543311
Q gi|254780334|r 205 --AKKNGVAMVLVGHV-TKEGQIAGP 227 (479)
Q Consensus 205 --AK~~~i~vilighv-TK~G~iAGp 227 (479)
..++++++++|.|+ .|-|.+-|.
T Consensus 181 ~~I~ks~t~vIFINQlReKIGVMFGn 206 (790)
T PRK09519 181 GALNNSGTTAIFINQLRDKIGVMFGS 206 (790)
T ss_pred HHHHCCCEEEEEEEHHHHHHCCCCCC
T ss_conf 77630774999942104540570379
No 59
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.7e-17 Score=147.15 Aligned_cols=125 Identities=18% Similarity=0.286 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHEECCCCCCC-------CCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEC
Q ss_conf 5555898875111102462221001456111-------543258799999999724886887859998742473163407
Q gi|254780334|r 338 LAMILAVLEARCNIKFGNHDVHLNIAGGYRI-------SEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVG 410 (479)
Q Consensus 338 l~~llAvl~k~~~~~~~~~Di~~nv~gG~~i-------~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~ 410 (479)
+.--.+++.+....+..++|+++++.+++.. +++||.+|+++||+||+.++|++++++++|+|++.|+|.||+
T Consensus 475 I~~k~~mI~~~~~~~~~~~d~~i~fs~s~~~eqsy~~vDGDSAS~A~~~aliSAl~~~Pv~Q~iAiTGsi~q~G~VqpVG 554 (647)
T COG1067 475 IHNKGMMIKQAFLMSILNYDIHIPFSASLVFEQSYGEVDGDSASLAEACALISALSKIPVDQDIAITGSIDQFGEVQPVG 554 (647)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEECC
T ss_conf 77889999998557743585566776689887523666686488999999999985488756346786333677245447
Q ss_pred CHHHHHH-------HHHHCCCCEEEECHHHHHHCC----------CCCEEEEEECCHHHHHHHHHCCCC
Q ss_conf 8899999-------999769989997757653228----------588089983839999998614764
Q gi|254780334|r 411 HMQQRLK-------EAEKIGFLSGVFPESAKGECK----------IGMLDRQYIKNLSDLVKKITALQK 462 (479)
Q Consensus 411 ~i~~ri~-------eA~~~G~~~~iiP~~n~~e~~----------~~~i~i~~v~~l~e~i~~l~~~~~ 462 (479)
|+..+|. .|.+.|.++||||+.|..... .+.++||+|+|+.|+++++.+..+
T Consensus 555 GV~eKIEgf~~~c~~~~~~G~q~ViIP~~N~~~l~l~~~v~~av~~g~f~I~~V~~i~eal~~~~~~~~ 623 (647)
T COG1067 555 GVNEKIEGFFRVCQAAGLTGEQGVIIPKANVKDLSLSEDVVKAVKEGKFEIWPVETIDEALELLLGKGE 623 (647)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 730530004888888761588548833131866402387887754484699995729999999827874
No 60
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage . RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , , among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, ß-strand 3, the loop C-terminal to ß-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and ß-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between ß-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at ß-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at ß-strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=99.74 E-value=7.9e-17 Score=142.34 Aligned_cols=229 Identities=23% Similarity=0.347 Sum_probs=171.6
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 6656403133345566632378124888865-985787089995498751889999999998503981999986463047
Q gi|254780334|r 54 HSISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ 132 (479)
Q Consensus 54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q 132 (479)
....+++|.+....+.+-++||.-.||-.|| ||+|+|.++.|.|+-..|||||+|++.++..+.|..+.||++|+..+.
T Consensus 18 GkG~im~Lg~~~~~~v~~i~tGsl~LD~AlG~GG~P~GRi~EiYGpESsGKTTLal~~iA~~Qk~Gg~~afiDAEHAlD~ 97 (322)
T TIGR02012 18 GKGSIMKLGEKSVEDVEVISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHVIAEAQKAGGVAAFIDAEHALDP 97 (322)
T ss_pred CCCEEEECCCCCCCCEEEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHCCH
T ss_conf 88214512554443100212530134355167989875079985489884789999999999743983899845130377
Q ss_pred HHHHHHHCCCCCCCHHEECCCCHH---HHHHHHHHCCCCCEEEECHHHHHHH-HHHCCCCCCH---HHHHHHHHHHHHH-
Q ss_conf 888875201577510000347889---9999997316982899721687665-4204455636---7999999999997-
Q gi|254780334|r 133 IRLRAQRLNTINSSVYIAIETNVE---DIIATLITNEKPDLVIIDSIQTLWS-QTAESSPGTV---IQVRTSVQAMIQY- 204 (479)
Q Consensus 133 i~~Ra~Rl~~~~~~i~~~~e~~l~---~il~~~i~~~~~~~vVIDSIQtl~~-~~~~s~~Gsv---sQvre~~~~L~~~- 204 (479)
.+|.+|+++-+++++..+..=| +|.+.+++....|++||||+.++.= .++++.-|.. -|.|-.++.|..+
T Consensus 98 --~YA~~LGv~~~~L~~sQPd~GE~ALeI~~~L~rSgAvD~iVvDSVAAL~P~aEieGemgd~~~Gl~ARLMS~ALRKl~ 175 (322)
T TIGR02012 98 --VYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLT 175 (322)
T ss_pred --HHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf --889983645247112088871469999999872376117997340013871231754354423257888999999888
Q ss_pred --HHHCCCEEEEEEEE-CCCCCCC-------CHHHHHHHHHEEE------EE-ECCCCCCCCCCEEEEEEEECCCC-CCC
Q ss_conf --53079789998630-3665433-------1145787753027------85-15556665442156763202567-651
Q gi|254780334|r 205 --AKKNGVAMVLVGHV-TKEGQIA-------GPRVIEHMVDAVL------YF-EGGTRNTQYDYRILRSVKNRFGP-TDE 266 (479)
Q Consensus 205 --AK~~~i~vilighv-TK~G~iA-------Gp~~LeH~VD~vl------~~-ege~~~~~~~~R~Lr~~KNRfG~-t~e 266 (479)
.++.++++++|.|+ .|=|.+= |=+.|....+.=| .+ +++...-.... ..+++||..-| ..+
T Consensus 176 g~~~k~~t~~iFiNQ~R~KiGv~fG~peTTtGG~ALKFYas~Rldirr~~~~K~g~~~~~G~~~-~vkv~KNKvApPF~~ 254 (322)
T TIGR02012 176 GALSKSNTTLIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGSVKEGENEAVGNRV-KVKVVKNKVAPPFRE 254 (322)
T ss_pred HHHHHCCCEEEEEEHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCEE-EEEEEEECCCCCHHH
T ss_conf 7653205237640022223221117888877641423344334443114654154001014335-789875067985213
Q ss_pred EEEEEECCCCCEEECCHHH
Q ss_conf 2799851566311014045
Q gi|254780334|r 267 IGVFEMSDKGLQEVSDPSK 285 (479)
Q Consensus 267 ~gvf~m~~~Gl~~v~~ps~ 285 (479)
.-+=-|-.+|+.....--.
T Consensus 255 aefdi~yg~Gi~~~g~~id 273 (322)
T TIGR02012 255 AEFDILYGEGISKLGEIID 273 (322)
T ss_pred HHEEEEECCCHHHHHHHHH
T ss_conf 0010221114023345676
No 61
>PRK05973 replicative DNA helicase; Provisional
Probab=99.72 E-value=1.5e-16 Score=140.24 Aligned_cols=135 Identities=22% Similarity=0.303 Sum_probs=106.3
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCC---CHHEEC---CCCHH
Q ss_conf 659857870899954987518899999999985039819999864630478888752015775---100003---47889
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINS---SVYIAI---ETNVE 156 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~---~i~~~~---e~~l~ 156 (479)
|-||+.||.+++|+|.||.|||+|+|+++.++++.|.+|+|+|.|++.+|+.+|...++.... +.+... .....
T Consensus 57 l~~gLqPGDLIIlAARPsMGKTafaLnla~~A~k~g~~v~fFSLEM~~~ql~~RL~~~~~~~~~~~~~~~iD~sd~i~~~ 136 (237)
T PRK05973 57 LFGQLRPGDLVLLGARPGQGKTLLGLELAVEAMKSGRTGVFFTLEYTEKDVLDRLRALGVDRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHCCCCCEECCCHHHHHH
T ss_conf 85689986779994289887899999999999995996699961599999999999727783340675100383033399
Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 9999997316982899721687665420445563679999999999975307978999863036654
Q gi|254780334|r 157 DIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQ 223 (479)
Q Consensus 157 ~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~ 223 (479)
.++..+....+.+++|||++|-|... ....++.+.+..|+.+||+.++|++++-|++.+=+
T Consensus 137 ~i~rrl~~~~~~~LIVIDYLQLM~~~------r~~~eiseisRsLK~lAkEl~vPVvaLSQLnRs~E 197 (237)
T PRK05973 137 YIIARLASAPRGTLVVIDYLQLLDQR------REKPDLSVQVRALKSFARKRGVILVFISQIDRSFD 197 (237)
T ss_pred HHHHHHHHCCCCCEEEEECHHHHCCC------CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 99999852789968999767752667------78866899999999999986993999400364322
No 62
>KOG1434 consensus
Probab=99.72 E-value=8.5e-17 Score=142.09 Aligned_cols=210 Identities=22% Similarity=0.282 Sum_probs=149.1
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH------HHHCCCCCEEEEECCCCH--HHHHHHH
Q ss_conf 55666323781248888659857870899954987518899999999------985039819999864630--4788887
Q gi|254780334|r 66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAA------SLAYKKHRITYVSGEEAI--GQIRLRA 137 (479)
Q Consensus 66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~------~~a~~g~~vlYvS~EEs~--~Qi~~Ra 137 (479)
.+...+|+||...||.+||||++.-+++.+.|+||+|||.|..|++. .+.-.+++++||..|-+. +.++.-|
T Consensus 91 r~~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IA 170 (335)
T KOG1434 91 RKTVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIA 170 (335)
T ss_pred HHCCCEEECCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEECCHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 50245463256777656248853102687707877670102358999765643218877428999258861458999999
Q ss_pred HHCCCCCC----CHHEECCCCHHHHHH-------HHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH----HHHHHHHHH
Q ss_conf 52015775----100003478899999-------997316982899721687665420445563679----999999999
Q gi|254780334|r 138 QRLNTINS----SVYIAIETNVEDIIA-------TLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ----VRTSVQAMI 202 (479)
Q Consensus 138 ~Rl~~~~~----~i~~~~e~~l~~il~-------~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ----vre~~~~L~ 202 (479)
+|.+++.+ |++.....+-+..++ .+-++.++.++|||||...|..++++. |..+| +-+.+.+|+
T Consensus 171 e~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~gr-geLseRqqkLn~ml~kl~ 249 (335)
T KOG1434 171 ERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGR-GELSERQQKLNQMLQKLN 249 (335)
T ss_pred HHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECEEHHEEECCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 8748898898877788777286999999999888874448579999800000302145664-308899999999999999
Q ss_pred HHHHHCCCEEEEEEEEC-CCCC----------CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEE
Q ss_conf 97530797899986303-6654----------331145787753027851555666544215676320256765127998
Q gi|254780334|r 203 QYAKKNGVAMVLVGHVT-KEGQ----------IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFE 271 (479)
Q Consensus 203 ~~AK~~~i~vilighvT-K~G~----------iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~ 271 (479)
++|++.|++||+..||| |.|. .+|--.+-|-.-+-+-|-- .....|+-...|..-=|..|. .|.
T Consensus 250 ~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrk----grg~eR~Akl~dSP~mpe~e~-~y~ 324 (335)
T KOG1434 250 KLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRK----GRGDERVAKLYDSPSMPEAEA-SYV 324 (335)
T ss_pred HHHHHCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEC----CCCCEEEEECCCCCCCCCCEE-EEE
T ss_conf 998752279998411114876332223344475444134310013699870----786402454126998876358-999
Q ss_pred ECCCCCEEEC
Q ss_conf 5156631101
Q gi|254780334|r 272 MSDKGLQEVS 281 (479)
Q Consensus 272 m~~~Gl~~v~ 281 (479)
.+..|+...+
T Consensus 325 It~~Gi~dss 334 (335)
T KOG1434 325 ITPGGIRDSS 334 (335)
T ss_pred ECCCCCCCCC
T ss_conf 7477655677
No 63
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2e-17 Score=146.70 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=132.9
Q ss_pred CCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHH---------CCCCCCCCHHHEECC-CCCCCCCCCCCHHHH
Q ss_conf 4115533101157787724776046866655558988751---------111024622210014-561115432587999
Q gi|254780334|r 309 ALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEAR---------CNIKFGNHDVHLNIA-GGYRISEPAADVAVA 378 (479)
Q Consensus 309 ~~lvEvQALv~~~~~~~p~R~~~G~d~~rl~~llAvl~k~---------~~~~~~~~Di~~nv~-gG~~i~~pa~DLaia 378 (479)
...|+||+.++. +.|-.+.+|++.. ||-|.| +++.|..+.|.+|++ +++++.++.+||+||
T Consensus 2 a~~V~VEv~~s~---glp~~~iVGL~d~------av~EsreRVraal~nsgf~~P~~ritiNLaPadl~KeG~~fDLpIa 72 (490)
T COG0606 2 APPVEVEVDISN---GLPGFTIVGLPDT------AVKESRERVRAALTNSGFEFPAKRITINLAPADLPKEGSRFDLPIA 72 (490)
T ss_pred CCCCCEEEEECC---CCCCCEEEECCCH------HHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCCCCCCCCCHHHH
T ss_conf 974223887338---9765036406817------7899999999898746788876780311571002544653446999
Q ss_pred HHHHHHHCCCCCC--CCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC-CCCEEEEEECCHHHHHH
Q ss_conf 9999972488688--78599987424731634078899999999769989997757653228-58808998383999999
Q gi|254780334|r 379 AALISSILSIPLP--SDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK-IGMLDRQYIKNLSDLVK 455 (479)
Q Consensus 379 ~ailSs~~~~~~~--~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~-~~~i~i~~v~~l~e~i~ 455 (479)
++|+.+..++|.+ .++.|+|||+|||.+|+|+|+.+.+..|.+.+.+.+|+|++|..|+. +++++++++.++.++++
T Consensus 73 l~ilaa~~~~~~~~l~~~~~lGEL~LdG~l~~v~G~lp~~~~a~~~~~~~~i~p~~n~~Easli~~~~v~~~~~l~ev~~ 152 (490)
T COG0606 73 LGILAASGQLPADALILYEFLGELSLDGLLRPVGGVLPAALAAKEKGKRGLIVPKENAEEASLIGGLPVYGARYLEEVVN 152 (490)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEECCHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99997426664134555776533411675225677115588875315782772411144034458887253302999999
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 8614764333354
Q gi|254780334|r 456 KITALQKKDKKTV 468 (479)
Q Consensus 456 ~l~~~~~~~~~~~ 468 (479)
+|.+........+
T Consensus 153 ~l~g~~~l~~~~~ 165 (490)
T COG0606 153 FLEGKLRLPIPIP 165 (490)
T ss_pred HHCCCCCCCCCCC
T ss_conf 8648867787786
No 64
>KOG1564 consensus
Probab=99.59 E-value=1.4e-14 Score=125.97 Aligned_cols=152 Identities=22% Similarity=0.340 Sum_probs=116.9
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCHHH-----HHHHHH
Q ss_conf 63237812488886598578708999549875188999999999850------3981999986463047-----888875
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY------KKHRITYVSGEEAIGQ-----IRLRAQ 138 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~------~g~~vlYvS~EEs~~Q-----i~~Ra~ 138 (479)
++++||-..||+.|+||++-+++|.|.|+.|+|||.|+||++-...- -|+.++|++.|.+... +.....
T Consensus 82 ~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~~ 161 (351)
T KOG1564 82 SKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTLP 161 (351)
T ss_pred HHCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 01104558888874499334548888602577588999999988608551089777439997688874778999998550
Q ss_pred -H-----CCC----CCCCHHEECCCCHHHHHHH-------HHHCCCCCEEEECHHHHHHHHHHCCCCC----CHHHHHHH
Q ss_conf -2-----015----7751000034788999999-------9731698289972168766542044556----36799999
Q gi|254780334|r 139 -R-----LNT----INSSVYIAIETNVEDIIAT-------LITNEKPDLVIIDSIQTLWSQTAESSPG----TVIQVRTS 197 (479)
Q Consensus 139 -R-----l~~----~~~~i~~~~e~~l~~il~~-------~i~~~~~~~vVIDSIQtl~~~~~~s~~G----svsQvre~ 197 (479)
| ..+ ..+.+|+..-.+++..++. +.+..+.++|||||+.+.|..+++.-+. .-.+....
T Consensus 162 ~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~rl 241 (351)
T KOG1564 162 QRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLFRL 241 (351)
T ss_pred CCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCEECCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 47994344342169776479873353356899886642310115730089971205777877325722325678899999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 999999753079789998630366
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKE 221 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~ 221 (479)
+..|..+|.+++.+|+++.|||.-
T Consensus 242 a~~Lr~LA~~~~~aVV~~NQVtd~ 265 (351)
T KOG1564 242 AGKLRQLASKFDLAVVCANQVTDR 265 (351)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999999887528628984111445
No 65
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940 This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=99.54 E-value=2.4e-14 Score=124.21 Aligned_cols=207 Identities=22% Similarity=0.324 Sum_probs=150.2
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH------HCCCCCEEEEECCCC--HHHHHHHH
Q ss_conf 5566632378124888865985787089995498751889999999998------503981999986463--04788887
Q gi|254780334|r 66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASL------AYKKHRITYVSGEEA--IGQIRLRA 137 (479)
Q Consensus 66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~------a~~g~~vlYvS~EEs--~~Qi~~Ra 137 (479)
....-.|+||...||.+||||+..-++|.+.|+--+|||.|+.-++... .-..+||.||..|.+ |+.|+.-|
T Consensus 72 R~~V~~i~TGs~~~d~~LGGGi~s~~ITE~fGEfR~GKTQl~HTL~VtaQLP~~~~g~~GKv~yIDTEgTFRPdri~~IA 151 (314)
T TIGR02238 72 RKKVLKISTGSKALDKILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGEGKVAYIDTEGTFRPDRIKAIA 151 (314)
T ss_pred CCEEEEEECCHHHHHHHCCCCEEEEEHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 62467762315887434078700000000004556771465556655320631257998428998178885817899887
Q ss_pred HHCCCCCC----CHHEECCCCHHHH-------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH---H-HHHHHHHHH
Q ss_conf 52015775----1000034788999-------9999731698289972168766542044556367---9-999999999
Q gi|254780334|r 138 QRLNTINS----SVYIAIETNVEDI-------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI---Q-VRTSVQAMI 202 (479)
Q Consensus 138 ~Rl~~~~~----~i~~~~e~~l~~i-------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs---Q-vre~~~~L~ 202 (479)
+|.+++.+ |+......+.|.. -..+.++..+.++|||||-++|.-++.+. |-.+ | +-....+|.
T Consensus 152 erf~~D~~~~L~Ni~yaRA~~~Eh~~~l~~~~~~~~~e~~~f~llivDSI~alFRVDfsGR-GELseRQQKL~~~l~~L~ 230 (314)
T TIGR02238 152 ERFGVDGEAVLDNILYARAYTSEHQMELLEKLAAKFAEEGDFRLLIVDSIMALFRVDFSGR-GELSERQQKLAQMLSRLN 230 (314)
T ss_pred HHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 5407898899988898875042789999999988752268716886420255413121257-640278899999999987
Q ss_pred HHHHHCCCEEEEEEEECCC-CC----CC------CHHHHHHHHHEEEEEE-CCCCCCCCCCEEEEEEEECCCCCCCEEEE
Q ss_conf 9753079789998630366-54----33------1145787753027851-55566654421567632025676512799
Q gi|254780334|r 203 QYAKKNGVAMVLVGHVTKE-GQ----IA------GPRVIEHMVDAVLYFE-GGTRNTQYDYRILRSVKNRFGPTDEIGVF 270 (479)
Q Consensus 203 ~~AK~~~i~vilighvTK~-G~----iA------Gp~~LeH~VD~vl~~e-ge~~~~~~~~R~Lr~~KNRfG~t~e~gvf 270 (479)
+++.+.|++||++.||.-| |. +| |=-+|-|-.-+=+.|- |. ...|+-...-..-=|-.|. .|
T Consensus 231 ~~sEefNvAv~~TNQv~~DPGa~~~F~~~~~KP~GGHvlaHAs~~R~~lRKGr-----g~~RvaK~~DsP~~pE~E~-~f 304 (314)
T TIGR02238 231 KLSEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASATRLLLRKGR-----GDERVAKLYDSPDLPEAEA-SF 304 (314)
T ss_pred HHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEEECCCCCCCCCCC-EE
T ss_conf 65466402320011220088730000007888715025777899888641588-----6551673016887722141-46
Q ss_pred EECCCCCEE
Q ss_conf 851566311
Q gi|254780334|r 271 EMSDKGLQE 279 (479)
Q Consensus 271 ~m~~~Gl~~ 279 (479)
.+++.|...
T Consensus 305 ~i~~~G~~D 313 (314)
T TIGR02238 305 QITEGGIAD 313 (314)
T ss_pred EECCCCCCC
T ss_conf 764876435
No 66
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=4e-12 Score=108.02 Aligned_cols=193 Identities=24% Similarity=0.286 Sum_probs=126.2
Q ss_pred CC-CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf 63-23781248888659857870899954987518899999999985039819999864630478888752015775100
Q gi|254780334|r 70 SR-IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVY 148 (479)
Q Consensus 70 ~R-i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~ 148 (479)
.+ +++|..|||+-||||++-||+++|-|+-|.|||-|+.|++.....+|+++.|+|.|......-...+.++.+-.+.+
T Consensus 7 ~~ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~ 86 (235)
T COG2874 7 KKIIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFL 86 (235)
T ss_pred HHHCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCHHHH
T ss_conf 45206784777865169974676999988898548899999999887089548999840359999998886388716877
Q ss_pred E------EC-------------CCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 0------03-------------4788999999973169828997216876654204455636799999999999753079
Q gi|254780334|r 149 I------AI-------------ETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG 209 (479)
Q Consensus 149 ~------~~-------------e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~ 209 (479)
+ +. ...++.+++ .++..+.+++||||+..+...+ +..++.+....+..++-...
T Consensus 87 l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~-~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~gK 159 (235)
T COG2874 87 LSGRLLFFPVNLEPVNWGRRSARKLLDLLLE-FIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLGK 159 (235)
T ss_pred HCCEEEEEEECCCCCCCCHHHHHHHHHHHHH-HHHHHCCCEEEEECCCHHHHCC------CHHHHHHHHHHHHHHHHCCC
T ss_conf 5062689993245422573778999999975-5775237789995343776526------49999999999999872897
Q ss_pred CEEEEEEE-ECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECC--CCCCCEEEEEEC
Q ss_conf 78999863-03665433114578775302785155566654421567632025--676512799851
Q gi|254780334|r 210 VAMVLVGH-VTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRF--GPTDEIGVFEMS 273 (479)
Q Consensus 210 i~viligh-vTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRf--G~t~e~gvf~m~ 273 (479)
.+++.-| -.-+..... .+.-.+|+.+.++.+.. -+..-+.+..+|-|- ++++..--|+..
T Consensus 160 -vIilTvhp~~l~e~~~~--rirs~~d~~l~L~~~~~-Gg~~~~~~~i~K~~ga~~s~~~~I~F~V~ 222 (235)
T COG2874 160 -VIILTVHPSALDEDVLT--RIRSACDVYLRLRLEEL-GGDLIKVLEIVKYRGARKSFQNIISFRVE 222 (235)
T ss_pred -EEEEEECHHHCCHHHHH--HHHHHHHEEEEEEHHHH-CCEEEEEEEEEEECCCHHHCCCCEEEEEC
T ss_conf -89999473433789999--99875202589870231-78455877876654713321774058855
No 67
>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503 The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of the KaiC domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. Kai proteins (KaiA and KaiC) appear to positively and negatively regulate kaiBC transcription which is consistent with a transcription/translation oscillatory (TTO) feedback model, believed to be at the core of all self-sustained circadian timers. However, the cyanobacterial circadian clock is able to function without de novo synthesis of clock gene mRNAs and the clock proteins, and the period is accurately determined without TTO feedback and the system is also temperature-compensated. It has been demonstrated that these three purified proteins form a temperature-compensated molecular oscillator in vitro that exhibits rhythmic phosphorylation and dephosphorylation of KaiC. A negative-stain electron microscopy study of Synechococcus elongatus and Thermosynechococcus elongatus BP-1 KaiAKaiC complexes in combination with site-directed mutagenesis reveals that KaiA binds exclusively to the CII half of the KaiC hexamer. The EM-based model of the KaiAKaiC complex reveals proteinprotein interactions at two sites: the known interaction of the flexible C-terminal KaiC peptide with KaiA, and a second postulated interaction between the apical region of KaiA and the ATP binding cleft on KaiC. This model brings KaiA mutation sites that alter clock period or abolish rhythmicity into contact with KaiC and suggests how KaiA might regulate KaiC phosphorylation . ; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0042752 regulation of circadian rhythm, 0045449 regulation of transcription.
Probab=99.47 E-value=3.1e-12 Score=108.84 Aligned_cols=268 Identities=24% Similarity=0.318 Sum_probs=185.3
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHCCCCC----
Q ss_conf 6323781248888659857870899954987518899999999985-03981999986463047888875201577----
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQRLNTIN---- 144 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~---- 144 (479)
.++.|.|.+||.+-.||++-|..+|+.|..|.|||.+.+|+..+.. .-.++.+|+++||++..+-..|..+|.+.
T Consensus 1 ~k~~t~ieGfdd~~~GGlP~Gr~tl~sGtsGtGkt~~~~~fl~~Gi~~fd~P~~fvtfee~P~di~~na~~fGW~l~~l~ 80 (484)
T TIGR02655 1 EKLRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSLQFLYNGIVHFDEPGVFVTFEESPKDIIKNAASFGWDLQKLV 80 (484)
T ss_pred CCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCHHHHHH
T ss_conf 95432103511220488343540366236764347777778887565407870599863785899977775040078885
Q ss_pred --CCHHE------------ECCCCHHHHHH---HHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --51000------------03478899999---99731698289972168766542044556367999999999997530
Q gi|254780334|r 145 --SSVYI------------AIETNVEDIIA---TLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKK 207 (479)
Q Consensus 145 --~~i~~------------~~e~~l~~il~---~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~ 207 (479)
+.+++ ..+.++..+++ ..+.+.+.+.+-|||+.+++-.. +. ..-||....+|..-.|+
T Consensus 81 ~~~klfildasPdP~Gq~~~G~fdls~lier~~yai~ky~a~rv~ids~t~vfqqy-~a----~~vvrre~frl~arlk~ 155 (484)
T TIGR02655 81 DEGKLFILDASPDPEGQDVVGEFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQY-DA----VSVVRREIFRLVARLKQ 155 (484)
T ss_pred HCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHH
T ss_conf 15967999668899755144031078999999999876410000034666567642-12----56788999999998865
Q ss_pred CCCEEEEEEE-ECCCCCCCCHHHHHHHHHEEE----EEECCCCCCCCCCEEEEEEEECCCCCCCEEE--EEECCCCCEEE
Q ss_conf 7978999863-036654331145787753027----8515556665442156763202567651279--98515663110
Q gi|254780334|r 208 NGVAMVLVGH-VTKEGQIAGPRVIEHMVDAVL----YFEGGTRNTQYDYRILRSVKNRFGPTDEIGV--FEMSDKGLQEV 280 (479)
Q Consensus 208 ~~i~viligh-vTK~G~iAGp~~LeH~VD~vl----~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv--f~m~~~Gl~~v 280 (479)
.+++.++.-. +..-|.+|---+=|...|-|. .+|||++ -|.+...|-| |.++--|- |.|++.|..-.
T Consensus 156 ~~~ttv~tter~~eyGP~a~yGveefvsdnvvi~rnvleGerr-----rrt~eilklr-Gt~hmkGeyPft~~~~G~~if 229 (484)
T TIGR02655 156 IGVTTVMTTERIDEYGPVARYGVEEFVSDNVVILRNVLEGERR-----RRTLEILKLR-GTSHMKGEYPFTITDDGINIF 229 (484)
T ss_pred CCCEEEEEECCCHHCCCCHHHCCHHHHCCCEEEEEECCCCCCC-----CEEEEEEEEC-CCCEECCCCCEEECCCCEEEE
T ss_conf 1503688532100037501202022202655676300034310-----0013344423-651003455511315861573
Q ss_pred CCHHHHHHCCCCCCC---CCEEEEEEECCCCCCEEEEEEEECCCCCCCCEE------EEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 140455511476676---734899730489741155331011577877247------76046866655558988751111
Q gi|254780334|r 281 SDPSKIFLSDRDSTS---PGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRR------TVVGWDSSRLAMILAVLEARCNI 351 (479)
Q Consensus 281 ~~ps~~fl~~~~~~~---~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R------~~~G~d~~rl~~llAvl~k~~~~ 351 (479)
.--.+-+++|..+. +|....--|-|..-+ ..---|++- ..|..+. .-.+-..+.-+++.|.-|.|+.+
T Consensus 230 -PlGamrltqrssn~rvssGv~~ld~mCGGGff-~dsiil~tG-atGtGktllvs~f~~~~C~n~~railfayeesraql 306 (484)
T TIGR02655 230 -PLGAMRLTQRSSNVRVSSGVKRLDEMCGGGFF-KDSIILATG-ATGTGKTLLVSKFLEDACKNKERAILFAYEESRAQL 306 (484)
T ss_pred -ECCHHHHHHCCCCCEEHHHHHHHHHHCCCCEE-EEEEEEEEC-CCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
T ss_conf -01111211100240210004666432178512-103567625-777660556667888641467735888511346777
No 68
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.46 E-value=4.6e-12 Score=107.56 Aligned_cols=181 Identities=24% Similarity=0.309 Sum_probs=111.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCC------------CCCEEEEECCCCHHHHHHHHHHCCC----C--CCCHHE--
Q ss_conf 7089995498751889999999998503------------9819999864630478888752015----7--751000--
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYK------------KHRITYVSGEEAIGQIRLRAQRLNT----I--NSSVYI-- 149 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~------------g~~vlYvS~EEs~~Qi~~Ra~Rl~~----~--~~~i~~-- 149 (479)
|.+.+++|+||+|||.|+|++|.+++.. ..+|+|+++|++..-++.|...+.. . ...+++
T Consensus 1 G~v~~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~~~~l~rRl~a~~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECC
T ss_conf 93899980899888999999999997599656898546877619999788998999999999998638665554166415
Q ss_pred --------ECC------CCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf --------034------788999999973169828997216876654204455636799999999999753079789998
Q gi|254780334|r 150 --------AIE------TNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLV 215 (479)
Q Consensus 150 --------~~e------~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vili 215 (479)
... ..++.+++. +...++++||||+++.+...+ -.+..+.......|.++|.+++++++++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~i~~~-~~~~~~~LVViDpL~~~~~~d----ENd~~~m~~~i~~l~~ia~~tg~aVl~v 155 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQ-LLIRRIDLVVIDPLVSFHGVS----ENDNGAMDAVIKALRRIAAQTGAAILLV 155 (239)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCCCCEEEECCCHHHCCCC----CCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 56664413357721014899999999-745899899983817748999----7889999999999999999719999997
Q ss_pred EEECCCCC--------CCCHHHHHHHHHEEEEE------ECCCC-----CCCCCCEEEEEEEECCC-CCCCEEEEEECCC
Q ss_conf 63036654--------33114578775302785------15556-----66544215676320256-7651279985156
Q gi|254780334|r 216 GHVTKEGQ--------IAGPRVIEHMVDAVLYF------EGGTR-----NTQYDYRILRSVKNRFG-PTDEIGVFEMSDK 275 (479)
Q Consensus 216 ghvTK~G~--------iAGp~~LeH~VD~vl~~------ege~~-----~~~~~~R~Lr~~KNRfG-~t~e~gvf~m~~~ 275 (479)
+|.+|... .-|...|---+..+.++ |.++. .+..-+|+- ..|.-++ +.+..-.|+|.+.
T Consensus 156 HHt~K~~~~~~~~~~a~RGaSaLvd~aR~~~~l~~m~~~ea~~~gi~~~~~~~~~r~~-~~k~n~~~~~~~~~w~~r~~g 234 (239)
T cd01125 156 HHVRKGSAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFG-VSKKNNAAATEADRWYRRNSG 234 (239)
T ss_pred ECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHCCCCEEEEC-CCCCCCCCCCCCCCEEEECCC
T ss_conf 0688767887104434664877432354766773799999998299801068769963-431026999976614684278
Q ss_pred C
Q ss_conf 6
Q gi|254780334|r 276 G 276 (479)
Q Consensus 276 G 276 (479)
|
T Consensus 235 g 235 (239)
T cd01125 235 G 235 (239)
T ss_pred C
T ss_conf 3
No 69
>KOG1433 consensus
Probab=99.35 E-value=1.4e-11 Score=104.03 Aligned_cols=207 Identities=24% Similarity=0.367 Sum_probs=135.6
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHHCCC
Q ss_conf 4556663237812488886598578708999549875188999999999850398199998646--30478888752015
Q gi|254780334|r 65 SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE--AIGQIRLRAQRLNT 142 (479)
Q Consensus 65 ~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE--s~~Qi~~Ra~Rl~~ 142 (479)
.....--++||..+||..|+||+.-|++++|.|+||+|||.|++.++....-.+.+++|+..|- .+..+...++|.+.
T Consensus 86 ~~~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~ 165 (326)
T KOG1433 86 LRSELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGL 165 (326)
T ss_pred HHCCCEEECCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCHHHHHHHHHHH
T ss_conf 61676254155055667742675558356885589844778888998870687511899952111033211356666303
Q ss_pred CCC----CHHEECCCCHHHH------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHC
Q ss_conf 775----1000034788999------99997316982899721687665420445563679----999999999975307
Q gi|254780334|r 143 INS----SVYIAIETNVEDI------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ----VRTSVQAMIQYAKKN 208 (479)
Q Consensus 143 ~~~----~i~~~~e~~l~~i------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ----vre~~~~L~~~AK~~ 208 (479)
... ++......+.++. ....+.+....++++||..+.+..+..+ +++..+ .......|...+++.
T Consensus 166 ~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~~~~~~l~~la~~~ 244 (326)
T KOG1433 166 RGRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKG-RGELSARQMLLAKFLRSLKKLADEF 244 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 067788888999998566677779999998620311699941345411331066-5215788999999999998888861
Q ss_pred CCEEEEEEEECCC--C--CC-------CCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf 9789998630366--5--43-------31145787753027851555666544215676320256765127998515663
Q gi|254780334|r 209 GVAMVLVGHVTKE--G--QI-------AGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGL 277 (479)
Q Consensus 209 ~i~vilighvTK~--G--~i-------AGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl 277 (479)
++++++..|||-+ | .+ +|-....|.|++-+++.- ....-|+-...+-++=|.+|- .|.....|+
T Consensus 245 g~~vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~----~~g~~~~~k~~~s~~l~e~~~-~~~i~~~g~ 319 (326)
T KOG1433 245 GVAVVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRK----GKGERRICKIADSPCLPEAEA-VFAITEDGI 319 (326)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHCCCCCCCCHH-HHHHHHHHH
T ss_conf 861798622023456653347665353554067889999999984----365100135542788995055-688876513
No 70
>TIGR00665 DnaB replicative DNA helicase; InterPro: IPR007692 This family includes the replicative DNA helicases, helicase DnaB, which exhibit DNA-dependent ATPase activity. Helicase DnaB is a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of more than 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. Replication protein, GP12 from Bacteriophage P22 also belongs to this family .; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication.
Probab=99.34 E-value=1.9e-11 Score=103.13 Aligned_cols=204 Identities=22% Similarity=0.326 Sum_probs=144.3
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCHHHHHHHHH-
Q ss_conf 556663237812488886598578708999549875188999999999850------3981999986463047888875-
Q gi|254780334|r 66 IEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY------KKHRITYVSGEEAIGQIRLRAQ- 138 (479)
Q Consensus 66 ~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~------~g~~vlYvS~EEs~~Qi~~Ra~- 138 (479)
.....-++||+..||.. .+|+.+|.++++++.|+.|||++++.++.+.+. ....++++|.|.+.+|+.+|.-
T Consensus 192 ~~~~~G~~~gf~~ld~~-~~G~~~~~l~~~~arP~~Gkt~~~~n~~~~~~~~~~~~~~~~~~~~fsle~~~~~~~~r~~~ 270 (465)
T TIGR00665 192 HLGVTGIPTGFYDLDKL-TGGFQPGDLIIVAARPSMGKTAFALNIAANAANREKFDKEDKPVLFFSLEMSAEQLALRLLA 270 (465)
T ss_pred CCCCCCCCCCCHHHHHH-HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 22256665320134454-32677565588833787525889999998776432024233503788514677999999987
Q ss_pred -------------------------HCC-CCC-CCHHEECCC--CHHHH---HHHHHHCC-C-CCEEEECHHHHHHHHHH
Q ss_conf -------------------------201-577-510000347--88999---99997316-9-82899721687665420
Q gi|254780334|r 139 -------------------------RLN-TIN-SSVYIAIET--NVEDI---IATLITNE-K-PDLVIIDSIQTLWSQTA 184 (479)
Q Consensus 139 -------------------------Rl~-~~~-~~i~~~~e~--~l~~i---l~~~i~~~-~-~~~vVIDSIQtl~~~~~ 184 (479)
-++ +.. .++++.... .+.++ +..+-... + .++++||++|.+.....
T Consensus 271 ~~~~~~~~~~~~g~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~gp~~~~~~dyl~l~~~~~~ 350 (465)
T TIGR00665 271 SESRIDSTKLRTGRLDDEEWEKLTKAMGELSDKLPLYIDDTSGITLTEIRSQARRLKRESGGPLGLILIDYLQLISGSKN 350 (465)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCC
T ss_conf 65310134432003237788889999887530156224205775299999999998864178501012345777410002
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCCC-CC---CC
Q ss_conf 44556367999999999997530797899986303665-----------43311457877530278515556-66---54
Q gi|254780334|r 185 ESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGTR-NT---QY 249 (479)
Q Consensus 185 ~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~~-~~---~~ 249 (479)
.-......|+.+++..|..+||+.++|++...++++.= .+--+-.+|...|.|+++.-+.. +. ..
T Consensus 351 ~~~~~r~~~~~~i~~~lk~~a~e~~~P~~al~~l~r~~e~r~d~rP~~~dlresG~~e~dad~~~~~~r~~~~~~~~~~~ 430 (465)
T TIGR00665 351 SYGDNRHQEVAEISRSLKALARELNVPVIALSQLSRSLEERKDKRPILSDLRESGSIEQDADLVLFLYRDEDYDKESEDK 430 (465)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEEEHHCCCCCCCCCCC
T ss_conf 35640468899998999988877414166566653223201345631233332167532210121100010036543112
Q ss_pred C------CEEEEEEEECCCCCCCEEEE
Q ss_conf 4------21567632025676512799
Q gi|254780334|r 250 D------YRILRSVKNRFGPTDEIGVF 270 (479)
Q Consensus 250 ~------~R~Lr~~KNRfG~t~e~gvf 270 (479)
. .--+-..|||-||++.+-+.
T Consensus 431 ~~~~~~~~~e~~~~k~rnGp~G~~~~~ 457 (465)
T TIGR00665 431 GGPKNLFEAELIIAKNRNGPTGTVKLL 457 (465)
T ss_pred CCCCHHEEEEEEEEECCCCCCCEEEEE
T ss_conf 455200000000000367874148875
No 71
>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503 The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of the KaiC domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. Kai proteins (KaiA and KaiC) appear to positively and negatively regulate kaiBC transcription which is consistent with a transcription/translation oscillatory (TTO) feedback model, believed to be at the core of all self-sustained circadian timers. However, the cyanobacterial circadian clock is able to function without de novo synthesis of clock gene mRNAs and the clock proteins, and the period is accurately determined without TTO feedback and the system is also temperature-compensated. It has been demonstrated that these three purified proteins form a temperature-compensated molecular oscillator in vitro that exhibits rhythmic phosphorylation and dephosphorylation of KaiC. A negative-stain electron microscopy study of Synechococcus elongatus and Thermosynechococcus elongatus BP-1 KaiAKaiC complexes in combination with site-directed mutagenesis reveals that KaiA binds exclusively to the CII half of the KaiC hexamer. The EM-based model of the KaiAKaiC complex reveals proteinprotein interactions at two sites: the known interaction of the flexible C-terminal KaiC peptide with KaiA, and a second postulated interaction between the apical region of KaiA and the ATP binding cleft on KaiC. This model brings KaiA mutation sites that alter clock period or abolish rhythmicity into contact with KaiC and suggests how KaiA might regulate KaiC phosphorylation . ; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0042752 regulation of circadian rhythm, 0045449 regulation of transcription.
Probab=99.30 E-value=2.5e-12 Score=109.53 Aligned_cols=200 Identities=27% Similarity=0.385 Sum_probs=156.2
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 45566632378124888865985787089995498751889999999998503981999986463047888875201577
Q gi|254780334|r 65 SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTIN 144 (479)
Q Consensus 65 ~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~ 144 (479)
......|+++|+..||.+.|||+...|++|.+|..|.|||-|.-.+..+.+++.++++.+..|||..|+...+..-|++.
T Consensus 238 qrssn~rvssGv~~ld~mCGGGff~dsiil~tGatGtGktllvs~f~~~~C~n~~railfayeesraql~rn~~sWG~df 317 (484)
T TIGR02655 238 QRSSNVRVSSGVKRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEDACKNKERAILFAYEESRAQLLRNAYSWGIDF 317 (484)
T ss_pred HCCCCCEEHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCH
T ss_conf 10024021000466643217851210356762577766055666788864146773588851134677752332014437
Q ss_pred CCHH------E---ECC-CCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 5100------0---034-788999---99997316982899721687665420445563679999999999975307978
Q gi|254780334|r 145 SSVY------I---AIE-TNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVA 211 (479)
Q Consensus 145 ~~i~------~---~~e-~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~ 211 (479)
+.+. + ++| +.+++. +...+.+.||..+-|||+.++....... ..|...--...+||+..++
T Consensus 318 e~~e~~~llki~C~yPes~Gledhlq~ik~~i~~fkP~r~~idslsalarGvs~n------afrqfviGvtGyakqeei~ 391 (484)
T TIGR02655 318 EELEQQGLLKIICAYPESAGLEDHLQIIKSEIAEFKPARIAIDSLSALARGVSNN------AFRQFVIGVTGYAKQEEIT 391 (484)
T ss_pred HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH------HHEEEEEEECCCCCHHHCE
T ss_conf 8850037237777077746617899999877742385300156577775321221------0003356411311200100
Q ss_pred EEEEEEECCCCCCCCHHHH-----HHHHHEEE---EEECCCCCCCCCCEEEEEEEECCCCCCCEEE--EEECCCCCE
Q ss_conf 9998630366543311457-----87753027---8515556665442156763202567651279--985156631
Q gi|254780334|r 212 MVLVGHVTKEGQIAGPRVI-----EHMVDAVL---YFEGGTRNTQYDYRILRSVKNRFGPTDEIGV--FEMSDKGLQ 278 (479)
Q Consensus 212 vilighvTK~G~iAGp~~L-----eH~VD~vl---~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv--f~m~~~Gl~ 278 (479)
-++.. ...++.|...+ -.+.|+++ |.| .+...-|-+-+.|-| |+-++-++ |.++++|..
T Consensus 392 G~ftn---t~~~f~G~hsit~shistitdtil~lqyve----i~Gem~ra~nvfkmr-GsWhdk~ire~~i~~~GP~ 460 (484)
T TIGR02655 392 GFFTN---TSDQFLGSHSITDSHISTITDTILLLQYVE----IRGEMSRAINVFKMR-GSWHDKGIREYVISDKGPE 460 (484)
T ss_pred EEEEC---CHHHHCCCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCC-CCCCCCCEEEEEECCCCCH
T ss_conf 22202---301230220000003567888887777765----533355443222002-5411253135664167832
No 72
>KOG2373 consensus
Probab=99.27 E-value=3.3e-11 Score=101.27 Aligned_cols=201 Identities=22% Similarity=0.266 Sum_probs=140.3
Q ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH------------------
Q ss_conf 78124888865985787089995498751889999999998503981999986463047888------------------
Q gi|254780334|r 74 THIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL------------------ 135 (479)
Q Consensus 74 TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~------------------ 135 (479)
.-++.|++.|+ |..||.++.++|+.|.||||++-..+-.++.+|-+.||.|+|.+-..+..
T Consensus 258 kRFpvLNk~Lk-GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y 336 (514)
T KOG2373 258 KRFPVLNKYLK-GHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSY 336 (514)
T ss_pred HHHHHHHHHHC-CCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 02068899853-67877269985688898236756765899863224406500436089999999997167237555456
Q ss_pred --HHHHCCCCCCC-HHEECCCCHHHHHH---HHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf --87520157751-00003478899999---9973169828997216876654204455636799999999999753079
Q gi|254780334|r 136 --RAQRLNTINSS-VYIAIETNVEDIIA---TLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG 209 (479)
Q Consensus 136 --Ra~Rl~~~~~~-i~~~~e~~l~~il~---~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~ 209 (479)
.|+|+.-...- ..+-++..++.+++ +.+--.+..-||||.+|-|.....-+..---.|.+ +......+|-++|
T Consensus 337 ~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~-iig~fR~fAT~nn 415 (514)
T KOG2373 337 KHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDR-IIGYFRQFATQNN 415 (514)
T ss_pred HHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHH-HHHHHHHHHHCCC
T ss_conf 678998752636761024610688899999899988754644455578874643010004566778-9999998754266
Q ss_pred CEEEEEEEECCCC--------CCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEE--EEECCCCCE
Q ss_conf 7899986303665--------43311457877530278515556665442156763202567651279--985156631
Q gi|254780334|r 210 VAMVLVGHVTKEG--------QIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGV--FEMSDKGLQ 278 (479)
Q Consensus 210 i~vilighvTK~G--------~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv--f~m~~~Gl~ 278 (479)
|.+-+|-|-.|+. .+-|+-....-.|-|+-+.-.+.+++.+-|.|...||||-. .+|+ .||..+++.
T Consensus 416 ~HvTlVvHPRKed~d~El~t~s~fGsAkatQEADNVliiQdkrl~~~rgkkyLqi~KNRy~G--dvg~~pLEf~kn~lt 492 (514)
T KOG2373 416 IHVTLVVHPRKEDGDTELDTQSFFGSAKATQEADNVLIIQDKRLDRDRGKKYLQILKNRYYG--DVGSDPLEFVKNPLT 492 (514)
T ss_pred EEEEEEECCCCCCCCCEEEEHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC--CCCCCCEEECCCCCC
T ss_conf 06999965665678744331010341110101362799850234566553465543212457--546552055158763
No 73
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.21 E-value=2.6e-10 Score=94.72 Aligned_cols=145 Identities=26% Similarity=0.378 Sum_probs=107.9
Q ss_pred CCCHHHHH-----HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------CCCEEEEECCCCHHHHHHH--
Q ss_conf 78124888-----865985787089995498751889999999998503----------9819999864630478888--
Q gi|254780334|r 74 THIDELDR-----VTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------KHRITYVSGEEAIGQIRLR-- 136 (479)
Q Consensus 74 TGi~eLDr-----vLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------g~~vlYvS~EEs~~Qi~~R-- 136 (479)
+--.|+|| +..+=++.|-.+++.|+.|+|||||+|+++-+++.. -++|+|+|.|.+.+.+-.|
T Consensus 68 ~~~~eWdrs~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~ 147 (402)
T COG3598 68 MRLSEWDRSNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLE 147 (402)
T ss_pred CCHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 57655173117566357765170589844886237689999999998647774533558880799982268688999999
Q ss_pred --HHHCCCCCCCHHEECCCCHH----------H----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf --75201577510000347889----------9----9999973169828997216876654204455636799999999
Q gi|254780334|r 137 --AQRLNTINSSVYIAIETNVE----------D----IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 137 --a~Rl~~~~~~i~~~~e~~l~----------~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~ 200 (479)
..++++...++..+..+|++ . -.+..+++..|+++|||++-.++..+-- +..|+++.+..
T Consensus 148 ~v~a~mgLsPadvrn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~----s~vqv~~fi~~ 223 (402)
T COG3598 148 PVRARMGLSPADVRNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSI----SDVQVKEFIKK 223 (402)
T ss_pred HHHHHCCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCC----HHHHHHHHHHH
T ss_conf 99987099857632200002456787200105899999999998747874997344542277411----16899999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCC
Q ss_conf 9997530797899986303665
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEG 222 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G 222 (479)
+.++|....+++++++|--|.+
T Consensus 224 ~rkla~~l~caIiy~hHtskss 245 (402)
T COG3598 224 TRKLARNLECAIIYIHHTSKSS 245 (402)
T ss_pred HHHHHHHCCCEEEEEECCCCCC
T ss_conf 9999986277399994456566
No 74
>TIGR02239 recomb_RAD51 DNA repair protein RAD51; InterPro: IPR011941 Homologous recombination is an evolutionarily conserved mechanism for the repair of double-strand breaks in DNA and the generation of genetic diversity. The primary function of homologous recombination in mitotic cells is to repair double-strand breaks or single-strand gaps that form as a result of replication fork collapse, from processing of spontaneous damage, and from exposure to DNA-damaging agents. During meiosis, homologous recombination is essential to establish a physical connection between homologous chromosomes to ensure their correct disjunction at the first meiotic division. In addition, the high frequency of meiotic recombination contributes to diversity by creating new linkage arrangements between genes, or parts of genes . The central step of homologous recombination is synapsis, the process of bringing together the two homologous strands. Rad51, a eukaryotic homologue of the prokaryotic recombinase RecA, mediates this process in eukaryotes . Firstly a single-stranded DNA tail is coated by ATP-bound Rad51 to yield a nucleoprotein filament. This filament then searches for a homologous sequence within double-stranded DNA, and catalyses the exchange of strands between the single-stranded and double-stranded DNA substrates. The original broken end of the resulting branched DNA is now aligned with an appropriate matching sequence in an intact duplex, and is further processed by other enzymes . Rad51 contains an N-terminal alpha-helical DNA binding domain not found in RecA, and a RecA-like C-terminal ATPase domain , . The active form of this protein is a long helical filament where the catalytically active unit is a homodimer . ; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair.
Probab=99.20 E-value=5e-11 Score=99.98 Aligned_cols=210 Identities=23% Similarity=0.341 Sum_probs=147.2
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH------CCCCCEEEEECCCCHHH--HHHH
Q ss_conf 455666323781248888659857870899954987518899999999985------03981999986463047--8888
Q gi|254780334|r 65 SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA------YKKHRITYVSGEEAIGQ--IRLR 136 (479)
Q Consensus 65 ~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a------~~g~~vlYvS~EEs~~Q--i~~R 136 (479)
...+.-.+.||..+||.+|+||+..||++.+.|+--+|||.||..++.... -..++++|+..|..... +..-
T Consensus 71 ~r~~~~~~~~Gs~~ld~~l~GG~e~Gsite~fGefr~Gk~q~Cht~~vtCql~~~~~G~~G~~lyid~e~tfr~~rl~~~ 150 (317)
T TIGR02239 71 KRKEVIQLTTGSKELDKLLEGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPVDQGGGEGKALYIDTEGTFRPERLLAI 150 (317)
T ss_pred HHHHHEECCCCHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 77654121035068999860875545032211000166202210011345301236787631688725653106899999
Q ss_pred HHHCCCCCCCHH----EECCCCHHHH------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH--H--HHHHHHHHH
Q ss_conf 752015775100----0034788999------9999731698289972168766542044556367--9--999999999
Q gi|254780334|r 137 AQRLNTINSSVY----IAIETNVEDI------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI--Q--VRTSVQAMI 202 (479)
Q Consensus 137 a~Rl~~~~~~i~----~~~e~~l~~i------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs--Q--vre~~~~L~ 202 (479)
|+|.++..++.. .....+.+.. -..+..+.++.++||||..++|..++.+. |..+ | +-.....|.
T Consensus 151 a~r~~l~~~~~l~nv~~ara~n~d~q~~ll~~a~~~~~~~~~~l~~vds~~alyr~d~~Gr-gel~~rq~~l~~flr~l~ 229 (317)
T TIGR02239 151 AERYGLNGEDVLDNVAYARAYNTDHQLKLLLQAAALMAESRYALLIVDSATALYRTDYSGR-GELSARQMHLAKFLRSLQ 229 (317)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 9862688778888878876504168999999999988627721451133567763035550-458899999999999999
Q ss_pred HHHHHCCCEEEEEEEECC--CCCC----C-------CHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf 975307978999863036--6543----3-------11457877530278515556665442156763202567651279
Q gi|254780334|r 203 QYAKKNGVAMVLVGHVTK--EGQI----A-------GPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGV 269 (479)
Q Consensus 203 ~~AK~~~i~vilighvTK--~G~i----A-------Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv 269 (479)
++|.+.++++++..||.- ||.. + |-+.+-|...+-|++.- -....|+.+......=|..|. .
T Consensus 230 ~la~~f~vav~~tnqv~~~~dG~~~~~~~~~~~kPiGG~i~ah~s~trl~l~k----G~G~~r~~k~~~sP~l~~~~~-~ 304 (317)
T TIGR02239 230 RLADEFGVAVVITNQVVAQVDGAASAMFAADAKKPIGGNIMAHASTTRLSLRK----GRGEQRICKIYDSPCLPESEA-V 304 (317)
T ss_pred HHHHHCCEEEEEECHHHHCCCCCHHHHHCCCCCCCCCCCEEEECCCEEEEEEC----CCCCCEEEEEECCCCCCCHHH-H
T ss_conf 88863454689742001003540234431445688675123201000234441----777310232310677520134-4
Q ss_pred EEECCCCCEEE
Q ss_conf 98515663110
Q gi|254780334|r 270 FEMSDKGLQEV 280 (479)
Q Consensus 270 f~m~~~Gl~~v 280 (479)
|.+.+.|....
T Consensus 305 f~i~~~G~~d~ 315 (317)
T TIGR02239 305 FAIAEDGIGDA 315 (317)
T ss_pred HHHHHHCCCCC
T ss_conf 43344211223
No 75
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=99.18 E-value=1.7e-10 Score=96.04 Aligned_cols=172 Identities=22% Similarity=0.353 Sum_probs=146.5
Q ss_pred CCCCCCEEEEEEECC-CCCCEEEEEEEECCCCCCCCEE-EEEC----CCHHHHHHHHHHHHHHCCC----------CCCC
Q ss_conf 667673489973048-9741155331011577877247-7604----6866655558988751111----------0246
Q gi|254780334|r 292 DSTSPGTAVFAGIEG-TRALLVEIQSLVVPTSLGMPRR-TVVG----WDSSRLAMILAVLEARCNI----------KFGN 355 (479)
Q Consensus 292 ~~~~~Gs~v~~~~eG-~r~~lvEvQALv~~~~~~~p~R-~~~G----~d~~rl~~llAvl~k~~~~----------~~~~ 355 (479)
+....|.+-+...-| ...+...+.+.+.+...-.+-+ ..+| +....+....|+.+++.+- ++.+
T Consensus 459 ~~~~~g~~~gl~~~g~~~g~~~~~~~~~~~~~~~~~g~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~p~p~~d~d~~~ 538 (662)
T TIGR00764 459 EGGEVGRVNGLAVLGEAGGIGLPIKAEVAPAESKEEGRILLTGKLGEIAKEAVLNVSALIKKYTGEKKLPLPKKDIDLSN 538 (662)
T ss_pred CCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 77631023101233145552024555543320257772675042245677888788888876411113677622244454
Q ss_pred CHHHEECCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 2221001456-111543258799999999724886887859998742473163407889999999976998999775765
Q gi|254780334|r 356 HDVHLNIAGG-YRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAK 434 (479)
Q Consensus 356 ~Di~~nv~gG-~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~ 434 (479)
+|+|+...+. -.+++.++..+++.+++|++.++|+.++.+++|.+++.|++.|++|+.+++..|.+.|++++++|+.|.
T Consensus 539 ~~~~~~f~~~y~~~~gd~~~~~~~~~~~~~~~~~p~~~~~~~~g~l~~~g~~l~~gg~~~~~~~~~~~g~~~~~~p~~~~ 618 (662)
T TIGR00764 539 YDIHIQFLQTYEGVEGDSASISVATAVISALEEIPVDQDVALTGSLSLRGEVLPVGGVTEKIEAAIEAGLKKVIIPKSNL 618 (662)
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf 21566430000234554025788999998875066422101002211255423217652356788750520343035443
Q ss_pred HHCC-----CCCEEEEEECCHHHHHHHHHCCCCC
Q ss_conf 3228-----5880899838399999986147643
Q gi|254780334|r 435 GECK-----IGMLDRQYIKNLSDLVKKITALQKK 463 (479)
Q Consensus 435 ~e~~-----~~~i~i~~v~~l~e~i~~l~~~~~~ 463 (479)
.+.- .+.+++++++++.+++++.......
T Consensus 619 ~d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 652 (662)
T TIGR00764 619 GDVLLDPETEGKIEIIPVETLDEVLEHVLDLDKK 652 (662)
T ss_pred CCEEECCCCCCCEEEECCHHHHHHHHHHHHCCCC
T ss_conf 2002223234724663001233455544303654
No 76
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=99.04 E-value=9.4e-09 Score=83.42 Aligned_cols=155 Identities=20% Similarity=0.215 Sum_probs=126.9
Q ss_pred CCCCCEEEEEEEECCCCCCCCEEEEECCCHHHH--------HHHHHHHHHHCCCCCCCCHHHEECCCCCCCCC-CCCCHH
Q ss_conf 897411553310115778772477604686665--------55589887511110246222100145611154-325879
Q gi|254780334|r 306 GTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRL--------AMILAVLEARCNIKFGNHDVHLNIAGGYRISE-PAADVA 376 (479)
Q Consensus 306 G~r~~lvEvQALv~~~~~~~p~R~~~G~d~~rl--------~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~-pa~DLa 376 (479)
.+++..++++--|.. ..|..+-.+.+++..-+ +-..| -..+|.++.++|+|+.+-.+-.+-+ ||+.++
T Consensus 44 ~g~~~gv~~~~~vtv-~pG~G~v~v~t~P~t~~d~~~SArvAa~~A--~~~~Gvd~ssyd~~i~v~a~~pVVGgPSagg~ 120 (579)
T COG1750 44 QGQGVGVPINISVTV-TPGDGRVYVATFPYTQIDMQGSARVAAGVA--LRLAGVDMSSYDVYIAVEADSPVVGGPSAGGY 120 (579)
T ss_pred CCCCCEEEEEEEEEE-CCCCCEEEEECCCCCHHCCCHHHHHHHHHH--HHHHCCCCCCEEEEEEEECCCCEECCCCCCHH
T ss_conf 377630231026665-289863886367774002213457888877--88627875322589999437974358651007
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHH-----H-CCCCCEEEEEECCH
Q ss_conf 99999997248868878599987424731634078899999999769989997757653-----2-28588089983839
Q gi|254780334|r 377 VAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKG-----E-CKIGMLDRQYIKNL 450 (479)
Q Consensus 377 ia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~-----e-~~~~~i~i~~v~~l 450 (479)
+++|+++++.+..++.+++++|-|-=||.|-||+|+..++.+|.+.|.|-+.||.+++. + .+..+++++.|.++
T Consensus 121 mtva~~~~~~~~~~~~~v~mTG~I~PDgsigpVGGi~~K~~AA~~~g~kifLIP~Gq~~~~d~~~Y~k~~gl~vieV~~~ 200 (579)
T COG1750 121 MTVAIYAALMGWSIRKDVMMTGMINPDGSIGPVGGILEKLEAAAKAGAKIFLIPVGQRIVVDLVEYGKSLGLKVIEVGTL 200 (579)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECH
T ss_conf 59999999957885467056523558874334544588899998579859996055444530787776426479997002
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999986147643
Q gi|254780334|r 451 SDLVKKITALQKK 463 (479)
Q Consensus 451 ~e~i~~l~~~~~~ 463 (479)
.+++.++.+.+..
T Consensus 201 ~~aiyy~tg~~~e 213 (579)
T COG1750 201 EDAAYYLTGPQIE 213 (579)
T ss_pred HHHHHHHCCCCCC
T ss_conf 2103454166678
No 77
>pfam07088 GvpD GvpD gas vesicle protein. This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation.
Probab=98.95 E-value=1.7e-08 Score=81.51 Aligned_cols=161 Identities=20% Similarity=0.292 Sum_probs=107.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH-HHH---------CCCCCCCHH-------EE
Q ss_conf 7870899954987518899999999985039819999864630478888-752---------015775100-------00
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLR-AQR---------LNTINSSVY-------IA 150 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~R-a~R---------l~~~~~~i~-------~~ 150 (479)
-+|+..||-|.||+|||+|.+.++..+.+. +.|+|+|.--..+.+... .++ +....+.+. -+
T Consensus 8 ~~G~tLlIkG~PGTGKTlfTl~~Ld~l~~~-~~vlYvStRvdqd~V~e~yf~~~~~~~~t~ilD~~qD~f~l~~~~~vP~ 86 (484)
T pfam07088 8 DFGKTLLINGAPGTGKTLFTIRGLDVLRRH-HDVLYVSTRVDQETVHEMYFEGHGSLDKTAILDLLQDPFILPTDVDVPF 86 (484)
T ss_pred CCCCEEEEECCCCCCCEEEEEEHHHHHHCC-CCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHHCCCCCCCCC
T ss_conf 998479993699987238985737788516-9769996323778887740200255575665453026010631113665
Q ss_pred CCCCHHHHHHHHHHCC----CCCEEEECHHHHHHHH---HHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 3478899999997316----9828997216876654---20445563679999999999975307978999863036654
Q gi|254780334|r 151 IETNVEDIIATLITNE----KPDLVIIDSIQTLWSQ---TAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQ 223 (479)
Q Consensus 151 ~e~~l~~il~~~i~~~----~~~~vVIDSIQtl~~~---~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~ 223 (479)
..++++.++++ ++.. .--.++.||-.+++.. ..+..+- ....++.|..+|.+.++-+++|- +
T Consensus 87 ~~l~l~sl~e~-vd~i~a~~er~~Ia~DSW~~i~eyLa~r~d~pe~----f~~~~n~lv~lar~~g~~Li~v~------E 155 (484)
T pfam07088 87 EKLNLDSLLEW-VDAINAAGERLTIAFDSWELIYEYLAERHDIPPD----ILTVTNQLVALARGSGARLVLVL------E 155 (484)
T ss_pred CCCCHHHHHHH-HHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHCCCEEEEEE------E
T ss_conf 42355579999-9876412457479983289999987776168466----75666567776652594599998------2
Q ss_pred CCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEEC
Q ss_conf 3311457877530278515556665442156763202
Q gi|254780334|r 224 IAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNR 260 (479)
Q Consensus 224 iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNR 260 (479)
-|.+..||.+||.|.+++...+++.+..|.||--|=|
T Consensus 156 ~~~~~~LeYivDGVVtL~vk~d~~GR~~R~L~LeKLR 192 (484)
T pfam07088 156 TAQNSRLEYIVDGVVTLNVKNDERGRTRRSLRLEKLR 192 (484)
T ss_pred CCCCCCCHHEEEEEEEEEEEECCCCCEEEEEEHHHHC
T ss_conf 3667751212303899988625678376776723422
No 78
>PRK12377 putative replication protein; Provisional
Probab=98.67 E-value=1e-06 Score=68.53 Aligned_cols=150 Identities=19% Similarity=0.290 Sum_probs=88.8
Q ss_pred HCCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHH
Q ss_conf 6598578-708999549875188999999999850398199998646304788887520157751000034788999999
Q gi|254780334|r 83 TGGGFVR-GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIAT 161 (479)
Q Consensus 83 LGGGl~~-Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~ 161 (479)
+..+|.. +..+++.|+||+|||.|+..++..+.++|++|+|++..+=..+++. +..-+ ...+.++..
T Consensus 93 ~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~~L~~-a~~~g-----------~~~~k~l~~ 160 (248)
T PRK12377 93 IADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE-SYDNG-----------QSGEKFLQE 160 (248)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH-HHHCC-----------CCHHHHHHH
T ss_conf 999873188608998999987889999999999987996999889999999999-99848-----------509999999
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC--CCCCCHHHHHHHH-H--E
Q ss_conf 973169828997216876654204455636799999999999753079789998630366--5433114578775-3--0
Q gi|254780334|r 162 LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE--GQIAGPRVIEHMV-D--A 236 (479)
Q Consensus 162 ~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~--G~iAGp~~LeH~V-D--~ 236 (479)
+ .++|++|||-+-. .|.+. +-+.....|..-=-+..-+++++--.+.+ +++-|..++..|+ + .
T Consensus 161 l---~~~dLLIIDElG~--------~~~s~-~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilgdailDRL~~h~~~ 228 (248)
T PRK12377 161 L---CKVDLLVLDEIGI--------QRETK-NEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGR 228 (248)
T ss_pred H---HCCCEEEEHHCCC--------CCCCH-HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 7---3389898600057--------88986-7999999999999855798689758997799888759999999866934
Q ss_pred EEEEECCCCCCCCCCEEEEEEE
Q ss_conf 2785155566654421567632
Q gi|254780334|r 237 VLYFEGGTRNTQYDYRILRSVK 258 (479)
Q Consensus 237 vl~~ege~~~~~~~~R~Lr~~K 258 (479)
++.|+|+.+.+ ..+.+|.+|
T Consensus 229 ~i~f~GeSYRk--~i~~~~~~~ 248 (248)
T PRK12377 229 WVNFNWESWRP--NVSHLRIVK 248 (248)
T ss_pred EEEEECCCCCC--CCCCCCCCC
T ss_conf 99861731113--577565469
No 79
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.65 E-value=2.7e-07 Score=72.81 Aligned_cols=144 Identities=22% Similarity=0.294 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
++..++|.|+||+||||++..++..+......++|++.+............................+.+.+ .++..++
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALA-LARKLKP 79 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHCCC
T ss_conf 997899999997029999999998726689968998759989888987653000112210519999999999-9984499
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEE
Q ss_conf 289972168766542044556367999999999997530797899986303665433114578775302785
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF 240 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ 240 (479)
.++++|.++.+........ .+.... ......+.......+|...+. ....++..+.+..|..+.+
T Consensus 80 ~viiiDei~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~vi~~~n~-~~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 80 DVLILDEITSLLDAEQEAL----LLLLEE--LRLLLLLKSEKNLTVILTTND-EKDLGPALLRRRFDRRIVL 144 (148)
T ss_pred CEEEEECCHHHCCCCCHHH----HHHHHH--HHHHCCCCCCCCEEEEEEECC-CCCCCHHHHCCCCCEEEEE
T ss_conf 8999827502147620799----999999--998517657899899995699-5224987707447879998
No 80
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.45 E-value=6.8e-06 Score=62.52 Aligned_cols=84 Identities=26% Similarity=0.313 Sum_probs=65.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHH---H
Q ss_conf 08999549875188999999999850398199998646----3047888875201577510000347889999999---7
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATL---I 163 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~---i 163 (479)
|++++.|++|+||||-+..+|..+.++|.++..++..- ..+|++..+++++++.- ....+.++.+++... -
T Consensus 1 ~Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~--~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF--EEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEE--ECCCCCCHHHHHHHHHHHH
T ss_conf 99999899999889999999999997699289997488757799999999997498599--2277558799999999998
Q ss_pred HCCCCCEEEECHH
Q ss_conf 3169828997216
Q gi|254780334|r 164 TNEKPDLVIIDSI 176 (479)
Q Consensus 164 ~~~~~~~vVIDSI 176 (479)
+..+.|+++||.-
T Consensus 79 ~~~~~D~IlIDTa 91 (173)
T cd03115 79 REENFDVVIVDTA 91 (173)
T ss_pred HHCCCCEEEEECC
T ss_conf 7568998999788
No 81
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.43 E-value=3.5e-06 Score=64.66 Aligned_cols=146 Identities=16% Similarity=0.287 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECC
Q ss_conf 37812488886598578708999549875188999999999850398199998646304788887520157751000034
Q gi|254780334|r 73 QTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIE 152 (479)
Q Consensus 73 ~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e 152 (479)
.+-..-.+. .+.|+ .-.++.|+||+|||.|+.-|+.++..+|+.|+|++..+=...++.-. + . .+
T Consensus 83 ~~a~~y~en-f~~~~---~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~lr~t~---~--~------~~ 147 (242)
T PRK07952 83 SKARQYVEE-FDGNI---ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTF---R--N------SE 147 (242)
T ss_pred HHHHHHHHH-HCCCC---CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH---H--C------CC
T ss_conf 999999986-54388---71799789999789999999999998799499977999999999998---0--6------87
Q ss_pred CCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC--CCCCCHHHH
Q ss_conf 788999999973169828997216876654204455636799999999999753079789998630366--543311457
Q gi|254780334|r 153 TNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE--GQIAGPRVI 230 (479)
Q Consensus 153 ~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~--G~iAGp~~L 230 (479)
..-++++..+ .++|++|||-+-+- .++-. .++....+++-=-...-|++++--.+-+ ..+.|.++.
T Consensus 148 ~~e~~~l~~l---~~~dLLIiDdlG~e--------~~t~~-~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~~lGeR~~ 215 (242)
T PRK07952 148 TSEEQLLNDL---SNVDLLVIDEIGVQ--------TESRY-EKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVM 215 (242)
T ss_pred CCHHHHHHHH---HCCCEEEEECCCCC--------CCCHH-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 5699999986---31898987301466--------58888-999999999999971698899817999999999708999
Q ss_pred HHHHH---EEEEEECCCC
Q ss_conf 87753---0278515556
Q gi|254780334|r 231 EHMVD---AVLYFEGGTR 245 (479)
Q Consensus 231 eH~VD---~vl~~ege~~ 245 (479)
..|.+ .+++|.++.+
T Consensus 216 dRl~~~~~~~l~f~w~Sy 233 (242)
T PRK07952 216 DRMRLGNSLWVIFNWDSY 233 (242)
T ss_pred HHHHHCCCEEEEECCCCC
T ss_conf 999727985996067050
No 82
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.35 E-value=1.6e-05 Score=59.79 Aligned_cols=84 Identities=26% Similarity=0.356 Sum_probs=63.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHH---
Q ss_conf 08999549875188999999999850398199998646----30478888752015775100003478899999997---
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLI--- 163 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i--- 163 (479)
.++++.|++|+||||-+..+|+...++|.+|..++..- ..+|++..++.+++..-. ...+.+..+++...+
T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~--~~~~~d~~~~~~~~l~~~ 79 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFG--SGTGSDPAAVAFDAVEKA 79 (196)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHHHH
T ss_conf 699998999998899999999999977992899975877688999999999863981781--487778789999999998
Q ss_pred HCCCCCEEEECHH
Q ss_conf 3169828997216
Q gi|254780334|r 164 TNEKPDLVIIDSI 176 (479)
Q Consensus 164 ~~~~~~~vVIDSI 176 (479)
...+.|+++||..
T Consensus 80 ~~~~~D~IlIDTa 92 (196)
T pfam00448 80 KAENYDVVLVDTA 92 (196)
T ss_pred HHCCCCEEEEECC
T ss_conf 8468999999899
No 83
>PRK06526 transposase; Provisional
Probab=98.34 E-value=9.4e-06 Score=61.53 Aligned_cols=165 Identities=16% Similarity=0.297 Sum_probs=96.7
Q ss_pred EECCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 0313334556663237812488886598-578708999549875188999999999850398199998646304788887
Q gi|254780334|r 59 FMLSEESIEEESRIQTHIDELDRVTGGG-FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRA 137 (479)
Q Consensus 59 ~~l~~~~~~~~~Ri~TGi~eLDrvLGGG-l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra 137 (479)
..|.+.+-...+.+.- .-+.++..+. +-.+..+++.|+||+|||.|+..++.++.++|++|.|++..+=..++.. +
T Consensus 68 ktLe~fd~~~~~~l~~--~~i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~-a 144 (254)
T PRK06526 68 KSLEEFDFDHQRSLKR--DTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAA-A 144 (254)
T ss_pred CCHHHCCCCCCCCCCH--HHHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH-H
T ss_conf 8987678656789899--999998637177658878998999986899999999999986996799877999999999-8
Q ss_pred HHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 52015775100003478899999997316982899721687665420445563679999999999975307978999863
Q gi|254780334|r 138 QRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 138 ~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
. .+..+...+.. -.+++++|||-+-.+ |-+.. -.+...+|+.---++. +++++-+
T Consensus 145 ~------------~~g~~~~~~~~---l~~~dLLIiDe~g~~--------~~~~~-~a~~lf~li~~Rye~~-S~IiTSn 199 (254)
T PRK06526 145 H------------HAGRLQDELVK---LGRIPLLIVDEVGYI--------PFEAE-AANLFFQLVSSRYERA-SLIVTSN 199 (254)
T ss_pred H------------HCCCHHHHHHH---HHCCCEEEEECCCCC--------CCCHH-HHHHHHHHHHHHHCCC-CEEEECC
T ss_conf 8------------55809999998---513687765021364--------47889-9999999999997458-8676658
Q ss_pred ECCC--CC-CCCHHHHHHHHHE------EEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 0366--54-3311457877530------2785155566654421567632025
Q gi|254780334|r 218 VTKE--GQ-IAGPRVIEHMVDA------VLYFEGGTRNTQYDYRILRSVKNRF 261 (479)
Q Consensus 218 vTK~--G~-iAGp~~LeH~VD~------vl~~ege~~~~~~~~R~Lr~~KNRf 261 (479)
..-+ ++ +..|..-.-++|- ++.|+|+ .||+ |||-
T Consensus 200 ~~~~~W~~~f~D~~la~AilDRL~H~a~~i~~~G~------SyR~----k~r~ 242 (254)
T PRK06526 200 KPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGD------SYRL----KDRD 242 (254)
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCC------CCCC----CCCC
T ss_conf 98668888648689999999986256289984388------6653----5576
No 84
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.34 E-value=6.7e-06 Score=62.60 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=57.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCC
Q ss_conf 78708999549875188999999999850398199998646304788887520157751000034788999999973169
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEK 167 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~ 167 (479)
.+...+|+.|+||+|||+|+..++..+.+.+..++|++..+............ .. .........+..+
T Consensus 17 ~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~~ 84 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG------HF------LVRLLFELAEKAK 84 (151)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHH------HH------HHHHHHHHHHHCC
T ss_conf 79980899899998865999999997121379827854777046777757605------77------8898999999769
Q ss_pred CCEEEECHHHHH
Q ss_conf 828997216876
Q gi|254780334|r 168 PDLVIIDSIQTL 179 (479)
Q Consensus 168 ~~~vVIDSIQtl 179 (479)
+.+++||-++.+
T Consensus 85 ~~vl~iDEi~~l 96 (151)
T cd00009 85 PGVLFIDEIDSL 96 (151)
T ss_pred CCEEEEECHHHC
T ss_conf 986982016655
No 85
>PRK08181 transposase; Validated
Probab=98.33 E-value=1.1e-05 Score=61.16 Aligned_cols=159 Identities=19% Similarity=0.279 Sum_probs=93.9
Q ss_pred CCEECCCCCCCCCCCCCCCCHHHHHHHCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 64031333455666323781248888659--8578708999549875188999999999850398199998646304788
Q gi|254780334|r 57 SLFMLSEESIEEESRIQTHIDELDRVTGG--GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIR 134 (479)
Q Consensus 57 ~~~~l~~~~~~~~~Ri~TGi~eLDrvLGG--Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~ 134 (479)
....|.+.+-+..+.+. =..+..+..+ =+..+..+++.|+||+|||.|+..++.++.++|++|.|++..+=..++.
T Consensus 73 ~~ktLe~fDf~~~p~i~--~~~i~~L~~~~~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~ 150 (269)
T PRK08181 73 PGKTLDSFDFEAVPMIS--KAQVMALAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred CCCCHHHCCCCCCCCCC--HHHHHHHHCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
T ss_conf 98886547855689989--9999999656758864870899899998788999999999998799399978999999999
Q ss_pred HHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 88752015775100003478899999997316982899721687665420445563679999999999975307978999
Q gi|254780334|r 135 LRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVL 214 (479)
Q Consensus 135 ~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vil 214 (479)
. ++ .+..+...+..+ .+++++|||-+-.+ |-+. +-.+...+++.---++.- +++
T Consensus 151 ~-a~------------~~~~~~~~~~~l---~~~dLLIiDe~G~~--------~~~~-~~~~~lf~lI~~Rye~~S-~II 204 (269)
T PRK08181 151 V-AR------------RELQLESAIAKL---DKFDLLILDDLAYV--------TKDQ-AETSVLFELISARYERRS-ILI 204 (269)
T ss_pred H-HH------------HCCCHHHHHHHH---HCCCEEEEHHCCCC--------CCCH-HHHHHHHHHHHHHHCCCC-EEE
T ss_conf 9-77------------558399999997---44460122010566--------7998-999999999999857888-899
Q ss_pred EEEE-CCC-CC-CCCHHHHHHHHHE------EEEEECC
Q ss_conf 8630-366-54-3311457877530------2785155
Q gi|254780334|r 215 VGHV-TKE-GQ-IAGPRVIEHMVDA------VLYFEGG 243 (479)
Q Consensus 215 ighv-TK~-G~-iAGp~~LeH~VD~------vl~~ege 243 (479)
+-+. ..+ ++ +..|..-.-++|- ++.++|+
T Consensus 205 TSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~Ge 242 (269)
T PRK08181 205 TANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE 242 (269)
T ss_pred ECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 88999778877538688999999987015289975587
No 86
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.25 E-value=1.5e-05 Score=60.11 Aligned_cols=153 Identities=16% Similarity=0.259 Sum_probs=89.6
Q ss_pred EECCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 03133345566632378124888865985-78708999549875188999999999850398199998646304788887
Q gi|254780334|r 59 FMLSEESIEEESRIQTHIDELDRVTGGGF-VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRA 137 (479)
Q Consensus 59 ~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl-~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra 137 (479)
..|.+.+-...+.+.. ..+..+.++.+ -.+..+++.|+||+|||.|+..++.++.++|.+|.|++..+-..+++..
T Consensus 17 ~tle~~d~~~~~~~~~--~~i~~L~~~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~~~- 93 (178)
T pfam01695 17 KTLEDFDFRAARGLDR--RLIAELAGLDWIEQAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRA- 93 (178)
T ss_pred CCHHHCCCCCCCCCCH--HHHHHHHCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH-
T ss_conf 9863368878999899--9999885597421587689989999878999999999999869859999616799999987-
Q ss_pred HHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 52015775100003478899999997316982899721687665420445563679999999999975307978999863
Q gi|254780334|r 138 QRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 138 ~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
. .+...+..+.. -.+++++|||-+-.. +.+..+ .+....++.---++ -+++++-+
T Consensus 94 ~------------~~~~~~~~l~~---~~~~dlLIiDDlG~~--------~~s~~~-~~~lf~li~~Rye~-~stIiTSN 148 (178)
T pfam01695 94 R------------GDGRLARTLQR---LAKADLLILDDIGYL--------PLSQEA-AHLLFELISDRYER-RSTILTSN 148 (178)
T ss_pred H------------HCCCHHHHHHH---HHCCCEEEEEHHCCC--------CCCHHH-HHHHHHHHHHHHCC-CCEEEECC
T ss_conf 5------------26749999999---625897887200165--------689899-99999999999756-88687768
Q ss_pred ECCC--CCCCC-HHHHHHHHHEEEE
Q ss_conf 0366--54331-1457877530278
Q gi|254780334|r 218 VTKE--GQIAG-PRVIEHMVDAVLY 239 (479)
Q Consensus 218 vTK~--G~iAG-p~~LeH~VD~vl~ 239 (479)
..-+ +++-| |..-..++|-.+|
T Consensus 149 ~~~~~W~~~~~d~~~a~AilDRlvh 173 (178)
T pfam01695 149 LPFGEWHEVFGDPTLATAILDRLLH 173 (178)
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9978998764876899999998701
No 87
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=7.9e-05 Score=54.78 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHH
Q ss_conf 9857870899954987518899999999985-0398199998646----3047888875201577510000347889999
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDII 159 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il 159 (479)
+|-....++.+.||.|+||||=..-+|+..+ +.|.+|..|+..- ..+|++.+|+-|+++..- ..+..++.
T Consensus 218 ~~~~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~v-----v~~~~el~ 292 (432)
T PRK12724 218 TGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP-----VKDIKKFK 292 (432)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE-----EECHHHHH
T ss_conf 5777762999989999888999999999999974992799952665377999999999985994599-----51899999
Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999731698289972168766542044556367999999999997530797899986
Q gi|254780334|r 160 ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 160 ~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
..+ ...+.|+|.||..- . ++-...|+.+....+..++....+-++|+=
T Consensus 293 ~al-~~~~~DlILIDTAG------r--S~rd~~~~~eL~~ll~~~~~~~~ie~~LVL 340 (432)
T PRK12724 293 ETL-ARDGSELILIDTAG------Y--SHRNLEQLERMQSFYSCFGEKDSVENLLVL 340 (432)
T ss_pred HHH-HHCCCCEEEEECCC------C--CCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999-85699999992999------8--978999999999999863667885179999
No 88
>TIGR02653 Lon_rel_chp conserved hypothetical protein; InterPro: IPR013473 This entry describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to IPR008269 from INTERPRO, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of Escherichia coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]..
Probab=98.22 E-value=1.9e-05 Score=59.24 Aligned_cols=157 Identities=20% Similarity=0.306 Sum_probs=111.8
Q ss_pred CCCCCEEEEEEEC--CCCCC-EEEEEEEECCCCCCCCEEEEECCC-----HHHHHHHHHHHHHHC-----CCCCCCCHHH
Q ss_conf 6767348997304--89741-155331011577877247760468-----666555589887511-----1102462221
Q gi|254780334|r 293 STSPGTAVFAGIE--GTRAL-LVEIQSLVVPTSLGMPRRTVVGWD-----SSRLAMILAVLEARC-----NIKFGNHDVH 359 (479)
Q Consensus 293 ~~~~Gs~v~~~~e--G~r~~-lvEvQALv~~~~~~~p~R~~~G~d-----~~rl~~llAvl~k~~-----~~~~~~~Di~ 359 (479)
...||+|-.++.. |.-.| =+|+|.... ..+-...|+- ++.+...--.++.+. ...+.++|=|
T Consensus 494 ~~~pG~vy~v~~~~~G~~GlYrfEvqv~AG-----~GK~~~sG~Gs~t~~KEsi~~aF~yfkgn~~~~s~~~~f~~~dyh 568 (677)
T TIGR02653 494 LLKPGVVYAVTQNESGKVGLYRFEVQVVAG-----SGKHKVSGLGSNTTAKESIRVAFDYFKGNLKRISASAKFSEKDYH 568 (677)
T ss_pred CCCCCEEEEEEECCCCCEEEEEEEEEEEEC-----CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEE
T ss_conf 888872899865588856368988888734-----761223212566310167887667753134223146787064007
Q ss_pred EECCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC
Q ss_conf 0014561115-432587999999997248868878599987424731634078899999999769989997757653228
Q gi|254780334|r 360 LNIAGGYRIS-EPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK 438 (479)
Q Consensus 360 ~nv~gG~~i~-~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~ 438 (479)
+++.-=+... ...+.||..+||+|...++++.++++++|+++|.|.|.+|..+-.-+.-|-..|.|+++||-+|+.+..
T Consensus 569 lhv~dL~~~g~s~~~~laa~Ial~S~~~~~~vqeqmviLG~mtigG~i~~v~~La~~LQ~a~d~GAKr~liP~~sa~~i~ 648 (677)
T TIGR02653 569 LHVVDLHNTGVSTEASLAALIALCSALLKRPVQEQMVILGSMTIGGVIKPVQDLAGSLQLAMDSGAKRVLIPLSSARDIL 648 (677)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 99871317885556789999999999861688875189863132540043555468899998618754740300244546
Q ss_pred ------CCCEEEEEECCHHHHH
Q ss_conf ------5880899838399999
Q gi|254780334|r 439 ------IGMLDRQYIKNLSDLV 454 (479)
Q Consensus 439 ------~~~i~i~~v~~l~e~i 454 (479)
..++++-..+.=.+|+
T Consensus 649 ~Vp~elf~Kfq~sFy~dP~dAv 670 (677)
T TIGR02653 649 TVPAELFSKFQISFYSDPVDAV 670 (677)
T ss_pred CCCHHHEECCCEEECCCHHHHH
T ss_conf 3785260224303437838999
No 89
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.21 E-value=3.5e-05 Score=57.39 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=80.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCCHHEECCCCHHHH------
Q ss_conf 85787089995498751889999999998503981999986463-04788887520157751000034788999------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSSVYIAIETNVEDI------ 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i------ 158 (479)
-+.+|..+-|.|+.|+|||||+--++.-..-..+. +++.+.+- ........+.++....+.+++..+-.+++
T Consensus 24 ~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~-i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQk 102 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHH
T ss_conf 98599999999999980999999996666679998-99999993328998984208999088836777589976769999
Q ss_pred ----HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf ----9999731698289972168766542044556367999999999997530797899986303665433114578775
Q gi|254780334|r 159 ----IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMV 234 (479)
Q Consensus 159 ----l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~V 234 (479)
++..+ -.+|++++.|-.. +.+|.. +-.++ ...|.. .+..+.++++|-| -+..++ +.
T Consensus 103 QRvalARal-~~~p~ililDEpt----s~LD~~--~e~~i---~~~l~~-l~~~~~Tvi~vtH--------~~~~~~-~a 162 (173)
T cd03246 103 QRLGLARAL-YGNPRILVLDEPN----SHLDVE--GERAL---NQAIAA-LKAAGATRIVIAH--------RPETLA-SA 162 (173)
T ss_pred HHHHHHHHH-HCCCCEEEEECCC----CCCCHH--HHHHH---HHHHHH-HHHCCCEEEEECC--------CHHHHH-HC
T ss_conf 999999998-2799999996876----689989--99999---999997-8648989999847--------999998-49
Q ss_pred HEEEEEE
Q ss_conf 3027851
Q gi|254780334|r 235 DAVLYFE 241 (479)
Q Consensus 235 D~vl~~e 241 (479)
|-|+.++
T Consensus 163 D~Iivl~ 169 (173)
T cd03246 163 DRILVLE 169 (173)
T ss_pred CEEEEEE
T ss_conf 9999993
No 90
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.20 E-value=2.6e-05 Score=58.26 Aligned_cols=134 Identities=19% Similarity=0.321 Sum_probs=75.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHH---
Q ss_conf 8578708999549875188999999999850398199998646----304788887520157751000034788999---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDI--- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i--- 158 (479)
=+.+|.++.|.|+.|+|||||+--++.-..-..+.+ ++.+++ +..+++. +++....+..++..+-.+++
T Consensus 29 ~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~p~~G~I-~~~g~~i~~~~~~~~r~---~i~~v~Q~~~l~~~tv~eni~~~ 104 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-LFEGEDISTLKPEIYRQ---QVSYCAQTPTLFGDTVYDNLIFP 104 (225)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHH---HCCEEECCCCCCHHHHHHHHHHH
T ss_conf 985996999999999999999999964668887659-99999977499999985---27457045543415399999857
Q ss_pred -------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -------------------------------------------9999731698289972168766542044556367999
Q gi|254780334|r 159 -------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 159 -------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
++..+ -.+|++++.|=.. +.+|. .-.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSGGqkQRv~iARaL-~~~p~iLllDEPt----s~LD~-----~~~~ 174 (225)
T PRK10247 105 WQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL-QFMPKVLLLDEIT----SALDE-----SNKH 174 (225)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCCH-----HHHH
T ss_conf 876676678999999998759956676188111899999999999998-6099999995976----66899-----9999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 99999999753079789998630366543311457877530278515
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
++...+.+++|+.++++++|-|- ...+++ .|-|+.+++
T Consensus 175 ~i~~~i~~l~~~~~~tvi~vtHd--------~~~~~~-aDrIivL~~ 212 (225)
T PRK10247 175 NVNEIIHRYVREQNIAVLWVTHD--------KDEINH-ADKVITLQP 212 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC--------HHHHHC-CCEEEEEEC
T ss_conf 99999999998389899999039--------999970-998999968
No 91
>PRK09183 transposase/IS protein; Provisional
Probab=98.19 E-value=1.9e-05 Score=59.27 Aligned_cols=158 Identities=20% Similarity=0.256 Sum_probs=90.4
Q ss_pred EECCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 0313334556663237812488886598-578708999549875188999999999850398199998646304788887
Q gi|254780334|r 59 FMLSEESIEEESRIQTHIDELDRVTGGG-FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRA 137 (479)
Q Consensus 59 ~~l~~~~~~~~~Ri~TGi~eLDrvLGGG-l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra 137 (479)
..|.+.+-...+.+.- .-+.++..+. +..+..+++.|+||+|||.|+..++..+.++|++|+|++..+=..++.. +
T Consensus 71 ktle~fDf~~~~~l~~--~~i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~-a 147 (258)
T PRK09183 71 KTFEEYDFTFATGAPQ--KQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLST-A 147 (258)
T ss_pred CCHHHCCCCCCCCCCH--HHHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH-H
T ss_conf 7775556546886238--999988258166558867998999986899999999999987993999789999999999-9
Q ss_pred HHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 52015775100003478899999997316982899721687665420445563679999999999975307978999863
Q gi|254780334|r 138 QRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 138 ~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
.. +..+...+... -.+++++|||-+-. .|-+.. ..+...+|+.---+++ ++++.-+
T Consensus 148 ~~------------~~~~~~~l~r~--l~~~dLLIiDdlG~--------~~~~~~-~~~~lfeli~~Rye~~-S~IiTSn 203 (258)
T PRK09183 148 QR------------QGRYKTTLQRG--VMAPRLLIIDEIGY--------LPFSQE-EANLFFQVIAKRYEKG-AMILTSN 203 (258)
T ss_pred HH------------CCCHHHHHHHH--HCCCCEEEEHHHHC--------CCCCHH-HHHHHHHHHHHHHCCC-CEEEECC
T ss_conf 87------------68599999987--43465144313315--------468888-9999999999985767-7899889
Q ss_pred ECCC---CCCCC-HHHHHHHHHE------EEEEECC
Q ss_conf 0366---54331-1457877530------2785155
Q gi|254780334|r 218 VTKE---GQIAG-PRVIEHMVDA------VLYFEGG 243 (479)
Q Consensus 218 vTK~---G~iAG-p~~LeH~VD~------vl~~ege 243 (479)
..-+ ..+.| |..-..++|- ++.|+|+
T Consensus 204 ~~~~~W~~~f~~D~~la~AilDRL~H~a~~i~l~Ge 239 (258)
T PRK09183 204 LPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGE 239 (258)
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 997898565168699999999986046179974587
No 92
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.17 E-value=6.4e-05 Score=55.44 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=29.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 85787089995498751889999999998503981999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITY 123 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY 123 (479)
=+.+|..+.|.|+.|+|||||+.-++.-+....+.+.|
T Consensus 23 ~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~~~G~I~~ 60 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60 (218)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 98699999999999980999999985556567764998
No 93
>PRK08116 hypothetical protein; Validated
Probab=98.15 E-value=3.4e-05 Score=57.47 Aligned_cols=134 Identities=22% Similarity=0.329 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
.+.-.++.|+||+|||.|+..+|..+..+|.+|+|++.-+-..+++.-...- +..+-.+++..+ .++
T Consensus 107 ~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~----------~~~~~~e~l~~l---~~~ 173 (262)
T PRK08116 107 ESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSE----------GKEDENEIIRAL---DNA 173 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCC----------CCHHHHHHHHHH---HCC
T ss_conf 6861899898999899999999999998799399988999999999998635----------610199999986---129
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC--CCCCHHHHHHHHH--EEEEEECCC
Q ss_conf 289972168766542044556367999999999997530797899986303665--4331145787753--027851555
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG--QIAGPRVIEHMVD--AVLYFEGGT 244 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G--~iAGp~~LeH~VD--~vl~~ege~ 244 (479)
+++|||.+.+-...++ .++....+++.--..+-|+|++--.+-+. ..-|.+.+..+.. ..+.|+|++
T Consensus 174 dLLIiDDlG~e~~t~w---------~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~~~~Ri~sRl~e~~~~v~~~G~d 244 (262)
T PRK08116 174 DLLILDDLGAEKDTEW---------VREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQYGKRTYSRILEMCTPVKNEGKS 244 (262)
T ss_pred CEEEEEHHCCCCCCHH---------HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 9899832214569878---------9999999999999769998998799999999986379999998677899851778
No 94
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=2.8e-05 Score=58.04 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=73.6
Q ss_pred CCHHHHHHHCCCCCC--------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCC
Q ss_conf 812488886598578--------708999549875188999999999850398199998646----30478888752015
Q gi|254780334|r 75 HIDELDRVTGGGFVR--------GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNT 142 (479)
Q Consensus 75 Gi~eLDrvLGGGl~~--------Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~ 142 (479)
+.+.|-+.++|++.. |.++++.|.-|+||||-+-.+|..+.++|++|+.+++.- ..+|++..++|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgV 262 (407)
T PRK12726 183 ITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 (407)
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 06899997538977032023036908999899989789999999999997799179997066778899999999999796
Q ss_pred CCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 7751000034788999999973169828997216
Q gi|254780334|r 143 INSSVYIAIETNVEDIIATLITNEKPDLVIIDSI 176 (479)
Q Consensus 143 ~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSI 176 (479)
+-- ......++...+..+......|+++||.-
T Consensus 263 pV~--~~~dpa~l~~av~~~a~~~~~DvVIIDTA 294 (407)
T PRK12726 263 ELI--VATSPAELEEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred EEE--EECCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 499--81888999999999986289998999699
No 95
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=98.12 E-value=5.9e-05 Score=55.72 Aligned_cols=137 Identities=23% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH-HCCCCCE-----EEEECCCCHHHHHHHHHHCCCCC---------CCHHEE
Q ss_conf 85787089995498751889999999998-5039819-----99986463047888875201577---------510000
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASL-AYKKHRI-----TYVSGEEAIGQIRLRAQRLNTIN---------SSVYIA 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~-a~~g~~v-----lYvS~EEs~~Qi~~Ra~Rl~~~~---------~~i~~~ 150 (479)
-+.||.+++++||.|+|||||+-=|.+== .+.|.=- |+-..++...|++.+---+...+ .|+.+.
T Consensus 27 ~i~~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~~L~ga~~~~l~~~RR~iGyIFQ~HNLl~~LTA~QNVqM~ 106 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELKGASKKELVQVRRNIGYIFQAHNLLGFLTARQNVQMA 106 (220)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHCCCCHHHHHHHHHHCCCEECCCHHCHHHHHHHHHHHH
T ss_conf 77176479843788984688999887625655560478220102678889999987639144120001000177888648
Q ss_pred --------------------CCCCHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf --------------------3478899-----------------999997316982899721687665420445563679
Q gi|254780334|r 151 --------------------IETNVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 151 --------------------~e~~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
..-.+++ .++.+. -..|++|.=|=-. +-+|+..|
T Consensus 107 ~eL~~~~~~~~~~~~a~~~L~~VGL~~~~~y~P~~LSGGQKQRVAIARAL-v~~P~LvLADEPT----AALD~~SG---- 177 (220)
T TIGR02982 107 LELQPNLSAQEAREKARAMLEAVGLGDRLDYYPENLSGGQKQRVAIARAL-VARPKLVLADEPT----AALDSKSG---- 177 (220)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCCCEEECCCCC----HHHHHCCC----
T ss_conf 98876116889999999999860601255405243678616899999997-3389767625772----33221133----
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
|++..-+.++||+.++++++|=|-+.= --+.|-++++|
T Consensus 178 -r~VV~Lm~~lA~eqGc~iL~VTHD~RI---------lDvADRI~~ME 215 (220)
T TIGR02982 178 -RDVVELMQKLAREQGCTILLVTHDNRI---------LDVADRIVQME 215 (220)
T ss_pred -HHHHHHHHHHHHHHCCEEEEEECCCCH---------HHHHHHHHHCC
T ss_conf -899999999887719889998367312---------00654442116
No 96
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.12 E-value=3.5e-05 Score=57.39 Aligned_cols=82 Identities=24% Similarity=0.414 Sum_probs=61.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHH
Q ss_conf 87089995498751889999999998503--98199998646----3047888875201577510000347889999999
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYK--KHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATL 162 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~--g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~ 162 (479)
.+.++.+.|++|+||||.+..+|+..... ..+|..||..- ..+|++.+|+.|+++.... ....++...+.
T Consensus 193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv--~~~~~l~~~l~-- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA--RDPKELAKALE-- 268 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE--CCHHHHHHHHH--
T ss_conf 67279997788875788999999999997389967999807776789999999999959748993--99999999998--
Q ss_pred HHCCCCCEEEECH
Q ss_conf 7316982899721
Q gi|254780334|r 163 ITNEKPDLVIIDS 175 (479)
Q Consensus 163 i~~~~~~~vVIDS 175 (479)
+-.+.|+|+||.
T Consensus 269 -~~~~~d~IlIDT 280 (282)
T TIGR03499 269 -RLRDKDLILIDT 280 (282)
T ss_pred -HCCCCCEEEEEC
T ss_conf -657989999819
No 97
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=0.00014 Score=52.89 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=62.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCC-CEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHH
Q ss_conf 78708999549875188999999999850-398-199998646----304788887520157751000034788999999
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAY-KKH-RITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIAT 161 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-~g~-~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~ 161 (479)
..+.++.+.|++|+||||.+.-+|+..+. .|. +|..||..- ..+|++.+|+-|+++..-. ....++...++
T Consensus 208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~--~~~~~l~~al~- 284 (412)
T PRK05703 208 EQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVA--YDPKELAKALE- 284 (412)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHH-
T ss_conf 567369998888875676999999999997299817999837677779999999999719737984--79999999998-
Q ss_pred HHHCCCCCEEEECHH
Q ss_conf 973169828997216
Q gi|254780334|r 162 LITNEKPDLVIIDSI 176 (479)
Q Consensus 162 ~i~~~~~~~vVIDSI 176 (479)
+..+.++|.||..
T Consensus 285 --~~~~~dlILIDTa 297 (412)
T PRK05703 285 --QLANCDLILIDTA 297 (412)
T ss_pred --HHCCCCEEEEECC
T ss_conf --7158997999689
No 98
>PRK06921 hypothetical protein; Provisional
Probab=98.11 E-value=3.4e-05 Score=57.47 Aligned_cols=134 Identities=20% Similarity=0.315 Sum_probs=84.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 7089995498751889999999998503-981999986463047888875201577510000347889999999731698
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
....++.|+||+|||.|+.-+|.++.++ |..|+|++.-+....++.-.+ ..+..++. -.+.
T Consensus 116 ~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~lk~~~~---------------~~~~~l~~---~~~~ 177 (265)
T PRK06921 116 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFD---------------LLEAKLNR---MKKV 177 (265)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH---------------HHHHHHHH---HHCC
T ss_conf 66279972898988999999999999962971999887999999998888---------------89999998---6329
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC-----CCCCCHHHHHHHHHEEEEEECC
Q ss_conf 28997216876654204455636799999999999753079789998630366-----5433114578775302785155
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE-----GQIAGPRVIEHMVDAVLYFEGG 243 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~-----G~iAGp~~LeH~VD~vl~~ege 243 (479)
+++|||-+ |.+.......+.. ..+....++..==.++-|+++.--.+-+ ++-.|+|.+|---|.++-++|+
T Consensus 178 dlLIIDDL---fk~~~G~e~~te~-~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~i~e~i~SRi~emc~~~~v~~~G~ 253 (265)
T PRK06921 178 EVLFIDDL---FKPVNGKPRATEW-QIEQTYSVVNYRYLNHKPILISSELTIDELLDIDEALGSRIVEMCKDYLVIINGD 253 (265)
T ss_pred CEEEEECC---CCCCCCCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99998221---2234798789889-9999999999999769998998689989998763798888999725748999674
Q ss_pred CC
Q ss_conf 56
Q gi|254780334|r 244 TR 245 (479)
Q Consensus 244 ~~ 245 (479)
+.
T Consensus 254 ~~ 255 (265)
T PRK06921 254 SF 255 (265)
T ss_pred HH
T ss_conf 11
No 99
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.09 E-value=2.8e-05 Score=58.05 Aligned_cols=129 Identities=20% Similarity=0.311 Sum_probs=76.0
Q ss_pred HHHHHCCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC--CCHHHHHHHHHHCCCCCCCHHE-ECCCC
Q ss_conf 8888659857-870899954987518899999999985039819999864--6304788887520157751000-03478
Q gi|254780334|r 79 LDRVTGGGFV-RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE--EAIGQIRLRAQRLNTINSSVYI-AIETN 154 (479)
Q Consensus 79 LDrvLGGGl~-~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E--Es~~Qi~~Ra~Rl~~~~~~i~~-~~e~~ 154 (479)
|.++.- |+. ...+++|+|++|+|||||+..++..+......+.|+..- .+.+-++.-+..+++..+...- ..-..
T Consensus 32 l~~L~~-~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~~~~~~~~~~~~ 110 (269)
T TIGR03015 32 MAYLEY-GLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRE 110 (269)
T ss_pred HHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 999999-9964896599972998988999999998459345489997699999999999999985989889899999999
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEEEEEC
Q ss_conf 899999997316982899721687665420445563679999999999975--30797899986303
Q gi|254780334|r 155 VEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYA--KKNGVAMVLVGHVT 219 (479)
Q Consensus 155 l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~A--K~~~i~vilighvT 219 (479)
+++.+.......+.-++|||--|.+..+.++ ++ ..|.++. ..+-+.++++||-.
T Consensus 111 l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le-------~L----r~L~n~e~~~~~ll~iiL~Gqpe 166 (269)
T TIGR03015 111 LEDFLIEQFAAGKRALLVVDEAQNLTPELLE-------EL----RMLSNFQTDNAKLLQIFLVGQPE 166 (269)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHCCHHHHH-------HH----HHHHCCCCCCCCCEEEEEECCHH
T ss_conf 9999999996699469997242219999999-------99----99970135888704899957867
No 100
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.06 E-value=5.6e-05 Score=55.87 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=77.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCC
Q ss_conf 70899954987518899999999985039819999864630478888752015775100003478899999997316982
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPD 169 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~ 169 (479)
..-.++.|++|+|||.|+.-+|..+..+|+.|+|++..+=...++. .+.. ...+.++++..+ ..+|
T Consensus 183 ~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~l~~--~~~~---------~~~~~~~~~~~l---~~~D 248 (330)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIENLRE--IRFN---------NDNDAPELEDLL---INCD 248 (330)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH--HHCC---------CCCCHHHHHHHH---HHCC
T ss_conf 8866988999998899999999999987994999629999999999--7545---------764489999999---6189
Q ss_pred EEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC--CCCCHHHHHHHHH--EEEEEECC
Q ss_conf 89972168766542044556367999999999997530797899986303665--4331145787753--02785155
Q gi|254780334|r 170 LVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG--QIAGPRVIEHMVD--AVLYFEGG 243 (479)
Q Consensus 170 ~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G--~iAGp~~LeH~VD--~vl~~ege 243 (479)
++|||-+.+-....+ ..+++ ..++..=-..+-++++.--.+-+. ..-+.++.-.+.. +.+.|.|+
T Consensus 249 LLIIDDLG~E~~t~~-----~~~~L----f~iIN~R~~~~k~tIITTNl~~~eL~~~y~eRi~SRi~~~~~~~~~~G~ 317 (330)
T PRK06835 249 LLIIDDLGTESITEF-----SKTEL----FNLINKRLLMNKKMIISTNLSLEELLKTYSERIASRLLGNFTLLKFYGE 317 (330)
T ss_pred EEEEECCCCCCCCHH-----HHHHH----HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 899721034558868-----99999----9999999867999799889998999998748999999818549985265
No 101
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.05 E-value=8.6e-05 Score=54.52 Aligned_cols=136 Identities=22% Similarity=0.303 Sum_probs=76.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC----H-HHHHHHHHHCCCCCCCHHEECCC-CHHHH-
Q ss_conf 85787089995498751889999999998503981999986463----0-47888875201577510000347-88999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA----I-GQIRLRAQRLNTINSSVYIAIET-NVEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs----~-~Qi~~Ra~Rl~~~~~~i~~~~e~-~l~~i- 158 (479)
-+.+|.++-|.|+.|+|||||+--++ .+.+...--+|+.+++- . ...+.|+..++....+..++... -.+++
T Consensus 32 ~i~~GE~v~ivG~sGsGKSTLl~~i~-Gl~~p~~G~I~~~G~~~~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 110 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILA-GLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE 110 (228)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHH
T ss_conf 99999899999999858999999996-69999967999999999979988998763064779814022479870212334
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
++.. --.+|++++.|=.. ..+| ..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~p~~LSGGq~QRv~iAra-L~~~P~llllDEPT----~~LD-----~~ 180 (228)
T PRK10584 111 LPALLRGESSAQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA-FNGRPDVLFADEPT----GNLD-----RQ 180 (228)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEECCCC----CCCC-----HH
T ss_conf 68988089989999998645542173445408878899799999999999-87599999984997----6789-----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
--+++...|.+++|++++++++|-|- +...++ .|-++.++
T Consensus 181 ~~~~i~~~l~~l~~~~g~tii~vtHd--------~~~~~~-~drvi~l~ 220 (228)
T PRK10584 181 TGDKIADLLFSLNREHGTTLILVTHD--------LQLAAR-CDRRLRLV 220 (228)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHH-CCCEEEEE
T ss_conf 99999999999999729899998866--------999985-89799998
No 102
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.05 E-value=2.5e-05 Score=58.40 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=56.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
.+..+++.|+||+|||.|+..++..+.+.|.+|+|++.-|-..+++.-... ...+.-+... -.++
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~-------------~~~~~~l~~~--l~~~ 168 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE-------------GRLEEKLLRE--LKKV 168 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHC-------------CCHHHHHHHH--HHHC
T ss_conf 588289989999879999999999999839849998859999999998745-------------5268999988--7528
Q ss_pred CEEEECHHHH
Q ss_conf 2899721687
Q gi|254780334|r 169 DLVIIDSIQT 178 (479)
Q Consensus 169 ~~vVIDSIQt 178 (479)
+++|||-|-.
T Consensus 169 dlLIiDDlG~ 178 (254)
T COG1484 169 DLLIIDDIGY 178 (254)
T ss_pred CEEEEECCCC
T ss_conf 9899823677
No 103
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=0.00023 Score=51.34 Aligned_cols=151 Identities=18% Similarity=0.264 Sum_probs=81.4
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHCCCCCCC------------HHEE-
Q ss_conf 98578708999549875188999999999850398199998646304-788887520157751------------0000-
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRAQRLNTINSS------------VYIA- 150 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra~Rl~~~~~~------------i~~~- 150 (479)
=-+.+|.++-|.|+-|+|||||+--++.-.....+. +++.+++-.. ..+.++.+++....+ +.+.
T Consensus 32 l~i~~Ge~~~liG~NGaGKSTLl~~l~gl~~p~~G~-I~~~g~~i~~~~~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~g~ 110 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGE-ILLDAQPLASWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGR 110 (265)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 898799899999999980999999995688998738-9999765675898998744666311245466880988887165
Q ss_pred ----------CCC---CHHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf ----------347---88999--------------------------999973169828997216876654204455636
Q gi|254780334|r 151 ----------IET---NVEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 151 ----------~e~---~l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
... .+++. ++..+ -.+|++++.|=.. +.+| +
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGGq~QRv~iAraL-~~~P~lLlLDEPt----s~LD-----~ 180 (265)
T PRK10575 111 YPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV-AQDSRCLLLDEPT----SALD-----I 180 (265)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCC-----H
T ss_conf 3011233247777999999999985991365168333899999999999987-5699989981776----5589-----9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 7999999999997530797899986303665433114578775302785155566654421567632025676512
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEI 267 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~ 267 (479)
..-+++...|.++++++++++++|-| ....+.++.|-|+.+.. . |++. .|+.+|+
T Consensus 181 ~~~~~i~~~l~~l~~~~g~tvi~vtH--------dl~~~~~~aDrv~vl~~-----G---~iv~-----~G~~~ev 235 (265)
T PRK10575 181 AHQVDVLALVHRLSQERGLTVIAVLH--------DINMAARYCDYLVALRG-----G---EMIA-----QGTPAEL 235 (265)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEC--------CHHHHHHHCCEEEEEEC-----C---EEEE-----ECCHHHH
T ss_conf 99999999999998628989999938--------88999996999999989-----9---6999-----8488997
No 104
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=6.8e-05 Score=55.24 Aligned_cols=136 Identities=14% Similarity=0.200 Sum_probs=73.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHCCCCCCCH--HEECCC---------
Q ss_conf 8578708999549875188999999999850398199998646-3047888875201577510--000347---------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-AIGQIRLRAQRLNTINSSV--YIAIET--------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-s~~Qi~~Ra~Rl~~~~~~i--~~~~e~--------- 153 (479)
-+.+|..+.|.|+-|+|||||+.-++.-..-..+.+.| .+.. +....+....+++....+. .+...+
T Consensus 31 ~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G~I~~-~g~~i~~~~~~~~~~~ig~vfQ~p~~~~~~~tv~~~i~~gl 109 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFY-NNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGL 109 (269)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE-CCEECCCCCHHHHHHHCEEEEECHHHHCCCCHHHHHHHHHH
T ss_conf 98599899999999997999999996497998509999-99999988989997502699887132047217999997336
Q ss_pred --------C----HHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf --------8----8999--------------------------9999731698289972168766542044556367999
Q gi|254780334|r 154 --------N----VEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 154 --------~----l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
. ++++ ++.. --.+|++++.|=.. +.+|. ..-+
T Consensus 110 ~~~~~~~~e~~~~v~~~L~~~~l~~~~~~~p~~LSGGqkQRvaiAra-L~~~P~iLilDEPT----s~LD~-----~~~~ 179 (269)
T PRK13648 110 ENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASV-LALNPSVIILDEAT----SMLDP-----DARQ 179 (269)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH-HHHCCCEEEECCCC----CCCCH-----HHHH
T ss_conf 44699999999999999987699134418964389999999999999-97598999981875----54899-----9999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+....|.++.+++++++++|-|-- ....+ .|.|+.++
T Consensus 180 ~i~~ll~~L~~~~~~TvI~itHdl--------~~a~~-aDrvivl~ 216 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDL--------SEAME-ADHVIVMN 216 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECH--------HHHHH-CCEEEEEE
T ss_conf 999999999973798999997678--------99971-99899998
No 105
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=98.04 E-value=1.2e-05 Score=60.68 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=102.7
Q ss_pred CCCCEEEEEEEC--CCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCC
Q ss_conf 767348997304--897411553310115778772477604686665555898875111102462221001456111543
Q gi|254780334|r 294 TSPGTAVFAGIE--GTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYRISEP 371 (479)
Q Consensus 294 ~~~Gs~v~~~~e--G~r~~lvEvQALv~~~~~~~p~R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~p 371 (479)
.-+|-.+++..+ ...|.-++++--.- --+-|...|+. ++... . -..+-+|-.|.. .|.+|
T Consensus 174 ~k~Gd~VtI~~~r~~~~~~~~~~tl~~~----~~~g~~giGIs---------l~d~~-~-v~~~~~V~~~~~---~IGGP 235 (342)
T COG3480 174 KKPGDEVTIDYERHNETPEIVTITLIKN----DDNGKAGIGIS---------LVDAP-E-VWAPPDVDFNTE---NIGGP 235 (342)
T ss_pred CCCCCEEEEEEEECCCCCCEEEEEEEEE----CCCCCCEEEEE---------EECCC-C-CCCCCCEEEECC---CCCCC
T ss_conf 6889769999995169872689999960----46886412158---------63476-5-456872675124---47997
Q ss_pred CCCHHHHHHHHHHHCCCCCC--CCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHC------------
Q ss_conf 25879999999972488688--7859998742473163407889999999976998999775765322------------
Q gi|254780334|r 372 AADVAVAAALISSILSIPLP--SDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGEC------------ 437 (479)
Q Consensus 372 a~DLaia~ailSs~~~~~~~--~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~------------ 437 (479)
|+.|=+.++|++-+..--+. ..++-+|-+.-||+|-+|+|+.+++.+|++.|.+-+++|.+|..+.
T Consensus 236 SAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vFf~P~~~~~e~~s~sny~~a~~~ 315 (342)
T COG3480 236 SAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVFFVPADNCAEEMSDSNYDEALVA 315 (342)
T ss_pred CHHHEEEHHHHHHCCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHH
T ss_conf 54333529888640531135866984111334688335745476776778765985998418762022013888888998
Q ss_pred -C--CCCEEEEEECCHHHHHHHHHCC
Q ss_conf -8--5880899838399999986147
Q gi|254780334|r 438 -K--IGMLDRQYIKNLSDLVKKITAL 460 (479)
Q Consensus 438 -~--~~~i~i~~v~~l~e~i~~l~~~ 460 (479)
+ ...++|.+|.++.|++.+|...
T Consensus 316 ak~l~t~mkivpv~T~q~aldyl~~~ 341 (342)
T COG3480 316 AEDLSTAMKIVPVKTLQEALDYLEKL 341 (342)
T ss_pred HHHHCCCCEEEEECHHHHHHHHHHCC
T ss_conf 87540362478510003266675427
No 106
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=98.03 E-value=0.0002 Score=51.85 Aligned_cols=134 Identities=14% Similarity=0.179 Sum_probs=95.0
Q ss_pred CCHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCHHHHHHHHH---HCCCCC
Q ss_conf 81248888659-8578708999549875188999999999850------3981999986463047888875---201577
Q gi|254780334|r 75 HIDELDRVTGG-GFVRGSVILVGGDPGIGKSTLLMQTAASLAY------KKHRITYVSGEEAIGQIRLRAQ---RLNTIN 144 (479)
Q Consensus 75 Gi~eLDrvLGG-Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~------~g~~vlYvS~EEs~~Qi~~Ra~---Rl~~~~ 144 (479)
=+..|+.+|.- .-.+--..||.|+++.|||++.-.|+..-.. ..-+|+|+-.=.++.+-..... .++.+.
T Consensus 45 ~L~~Le~Ll~~P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~ 124 (302)
T pfam05621 45 ALNRLEALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPL 124 (302)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999999846864688755887079887899999999967998786667021899976999886899999999837877
Q ss_pred CCHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 5100003478899999997316982899721687665420445563679999999999975307978999863
Q gi|254780334|r 145 SSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 145 ~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
..- ......+..+..+.+..+++++|||=+..+. .|+..+-|++.+.|..++.+..|+++++|-
T Consensus 125 ~~~--~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL-------~Gs~~~qr~~ln~LK~L~Nel~IpiV~vGt 188 (302)
T pfam05621 125 RPR--PRLPEMEQLALALLRKVGVRMLVIDELHNVL-------AGNSVNRREFLNLLRFLGNELRIPLVGVGT 188 (302)
T ss_pred CCC--CCHHHHHHHHHHHHHHCCCCEEEEECHHHHC-------CCCHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 888--7789999999999997498789985436560-------486889999999999986365878699531
No 107
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=5.9e-05 Score=55.69 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=78.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHCCCCCCCHHEECCCCHHHH------
Q ss_conf 857870899954987518899999999985039819999864630-4788887520157751000034788999------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-GQIRLRAQRLNTINSSVYIAIETNVEDI------ 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i------ 158 (479)
-+.+|..+.|.|+.|+|||||+.-++.-..-..+. +++.+.+-. ...+....+++....+.+++..+-.+++
T Consensus 24 ~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNiLSgGq~ 102 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHCCCHHHH
T ss_conf 98599899999999983999999997677589748-99999998859989986318999666843757799977448899
Q ss_pred ----HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf ----9999731698289972168766542044556367999999999997530797899986303665433114578775
Q gi|254780334|r 159 ----IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMV 234 (479)
Q Consensus 159 ----l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~V 234 (479)
++..+ -.+|++++.|-.. +.+|.. + -+.+...|..+++ +.++++|-|- +..++ +.
T Consensus 103 Qri~lARal-~~~p~illlDEpt----s~LD~~--~---~~~i~~~l~~~~~--~~Tvi~vtH~--------~~~~~-~~ 161 (171)
T cd03228 103 QRIAIARAL-LRDPPILILDEAT----SALDPE--T---EALILEALRALAK--GKTVIVIAHR--------LSTIR-DA 161 (171)
T ss_pred HHHHHHHHH-HHCCCEEEEECCC----CCCCHH--H---HHHHHHHHHHHCC--CCEEEEEECC--------HHHHH-HC
T ss_conf 999999999-7489989995776----679989--9---9999999999809--9989999579--------99997-09
Q ss_pred HEEEEEE
Q ss_conf 3027851
Q gi|254780334|r 235 DAVLYFE 241 (479)
Q Consensus 235 D~vl~~e 241 (479)
|-|+.++
T Consensus 162 D~v~~l~ 168 (171)
T cd03228 162 DRIIVLD 168 (171)
T ss_pred CEEEEEE
T ss_conf 9999981
No 108
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=98.02 E-value=0.00019 Score=52.05 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=70.6
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCC
Q ss_conf 663237812488886598578708999549875188999999999850398199998646304788887520---15775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~ 145 (479)
.+-+.|||.-+|-++ =+.+|+=.+|.|+.|+|||+++++...+-...+-.|+|+.--|..+.+..-.+.| +....
T Consensus 143 ~epL~TGIkaID~l~--PiGrGQR~lIiGd~gtGKT~iaidtIinqk~~~vicVyvaIGer~seV~~~v~~L~~~gal~~ 220 (502)
T PRK09281 143 HEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVANVVRKLEEHGAMEY 220 (502)
T ss_pred CCCCCCCHHHHHHCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 752331135554125--656875667524787338899999998532588369999851221789999998754486411
Q ss_pred CHHEECCCC---H---------HHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---8---------999999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---V---------EDIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l---------~~il~~~i~~~~~~~vVIDSIQtl 179 (479)
.+.+....+ . -.+-+...++.+.-++|+|++...
T Consensus 221 TvvV~ata~dpa~lr~~Apyaa~aIAEyFrd~G~dVLlv~DdLtr~ 266 (502)
T PRK09281 221 TIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 3799717999999999999999999999996799489998556899
No 109
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.01 E-value=0.00044 Score=49.33 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=95.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHC---CCCC
Q ss_conf 6632378124888865985787089995498751889999999998503-98199998646304788887520---1577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYVSGEEAIGQIRLRAQRL---NTIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~ 144 (479)
.+-+.|||.-+|-++ =+.+|+=.+|.|+||+|||+|+.+++.+.++. ...++|+.--|..+.+..-.+.+ +...
T Consensus 50 ~e~l~TGIr~ID~l~--pigkGQR~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~~~~~l~ 127 (274)
T cd01133 50 TEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLS 127 (274)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 873115866664446--614785778757999982368999999998508987999984255488999999720356653
Q ss_pred CCHHEECCCC---HHH---------HHHHHH-HCCCCCEEEECHHHHHH---------HHHHC---CCCCCHH-HHHHHH
Q ss_conf 5100003478---899---------999997-31698289972168766---------54204---4556367-999999
Q gi|254780334|r 145 SSVYIAIETN---VED---------IIATLI-TNEKPDLVIIDSIQTLW---------SQTAE---SSPGTVI-QVRTSV 198 (479)
Q Consensus 145 ~~i~~~~e~~---l~~---------il~~~i-~~~~~~~vVIDSIQtl~---------~~~~~---s~~Gsvs-Qvre~~ 198 (479)
..+.+.+..+ ... +-+... ++.+--++++||+.... ..+.+ +.|+++. ++....
T Consensus 128 ~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd~~G~dVLll~DslTr~A~A~reis~~~g~~P~~~gyp~~l~~~~~~l~ 207 (274)
T cd01133 128 KTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQ 207 (274)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 37999834555405789999999999999997289859999718689999999888862899986666830788999999
Q ss_pred HHHHHHHHHCCCEEEEEEEECCCCCCCCHH--HHHHHHHEEEEEEC
Q ss_conf 999997530797899986303665433114--57877530278515
Q gi|254780334|r 199 QAMIQYAKKNGVAMVLVGHVTKEGQIAGPR--VIEHMVDAVLYFEG 242 (479)
Q Consensus 199 ~~L~~~AK~~~i~vilighvTK~G~iAGp~--~LeH~VD~vl~~eg 242 (479)
.+.. ..+.-.+|.+-+-. +..+.+..|- .+--+.|..++|.-
T Consensus 208 ER~~-~~~~GSiT~i~tv~-~~~dD~~dpi~~~~~~i~dG~ivLsr 251 (274)
T cd01133 208 ERIT-STKKGSITSVQAVY-VPADDLTDPAPATTFAHLDATTVLSR 251 (274)
T ss_pred HHHC-CCCCCCEEEEEEEE-CCCCCCCCCHHHHHHHHHCEEEEECH
T ss_conf 9744-88898746888997-45888766177888774072999858
No 110
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.00 E-value=4.8e-05 Score=56.35 Aligned_cols=134 Identities=18% Similarity=0.291 Sum_probs=80.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCCHHEECCCCHHH-------
Q ss_conf 85787089995498751889999999998503981999986463-0478888752015775100003478899-------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSSVYIAIETNVED------- 157 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~------- 157 (479)
-+.+|.++-+.|+-|+|||||+--++.-.-...+.+.| .++.- ....+.++.+++.....+ ...++++
T Consensus 21 ~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~-~g~~i~~~~~~~~~~~i~~v~Q~l---~~~~l~~~~~~~~~ 96 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL-DGKDLASLSPKELARKIAYVPQAL---ELLGLAHLADRPFN 96 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE-CCEECCCCCHHHHHCCCCHHHHHH---HHCCCHHHHCCCHH
T ss_conf 88699799999899988999999995798998728999-999989699999955464999999---98599778649910
Q ss_pred ----------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH
Q ss_conf ----------9999973169828997216876654204455636799999999999753079789998630366543311
Q gi|254780334|r 158 ----------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGP 227 (479)
Q Consensus 158 ----------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp 227 (479)
.++..+ -.+|++++.|=..+- +| +..-.++...+.++.|+.+++++++-|- .
T Consensus 97 ~LSGGqkQrv~iA~aL-~~~P~ililDEPts~----LD-----~~~~~~i~~~i~~l~~~~~~tii~itHd--------l 158 (180)
T cd03214 97 ELSGGERQRVLLARAL-AQEPPILLLDEPTSH----LD-----IAHQIELLELLRRLARERGKTVVMVLHD--------L 158 (180)
T ss_pred HCCHHHHHHHHHHHHH-HHCCCEEEECCCCCC----CC-----HHHHHHHHHHHHHHHHHCCCEEEEEECC--------H
T ss_conf 3799999999999999-868964788587544----79-----9999999999999998469899999079--------8
Q ss_pred HHHHHHHHEEEEEE
Q ss_conf 45787753027851
Q gi|254780334|r 228 RVIEHMVDAVLYFE 241 (479)
Q Consensus 228 ~~LeH~VD~vl~~e 241 (479)
..++.+.|.++.++
T Consensus 159 ~~~~~~~d~i~vm~ 172 (180)
T cd03214 159 NLAARYADRVILLK 172 (180)
T ss_pred HHHHHHCCEEEEEE
T ss_conf 99999799999997
No 111
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=0.00013 Score=53.25 Aligned_cols=137 Identities=22% Similarity=0.333 Sum_probs=81.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH---HHHHHHHHHCCCCCCCHHEECC-CCHHHH---
Q ss_conf 857870899954987518899999999985039819999864630---4788887520157751000034-788999---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI---GQIRLRAQRLNTINSSVYIAIE-TNVEDI--- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~---~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~i--- 158 (479)
=+.+|.++-|.|+.|+|||||+--++ .+-+...--+|+.+++-. .+...+-.+++....+..+++. +-.+++
T Consensus 22 ~i~~Ge~~~ivGpSG~GKSTllr~i~-Gl~~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ~~~L~p~~tv~eNv~~~ 100 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIA-GLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHCEE
T ss_conf 98899899999999983999999998-59999963999999999888610245417759992699889989289960081
Q ss_pred ----------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHH
Q ss_conf ----------9999731698289972168766542044556367999999999997530797899986303665433114
Q gi|254780334|r 159 ----------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPR 228 (479)
Q Consensus 159 ----------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~ 228 (479)
++..+ -.+|++++.|=--+ .+|. .--.+.-..|..+.+++++++++|-|-- .
T Consensus 101 LSGGq~QRvaIARAL-~~~P~ill~DEPts----~LD~-----~~~~~i~~~l~~l~~~~~~t~i~vTHd~--------~ 162 (178)
T cd03229 101 LSGGQQQRVALARAL-AMDPDVLLLDEPTS----ALDP-----ITRREVRALLKSLQAQLGITVVLVTHDL--------D 162 (178)
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEEECCCC----CCCH-----HHHHHHHHHHHHHHHHHCCEEEEECCCH--------H
T ss_conf 772688999999998-52999999708976----4799-----9999999999999996499999998999--------9
Q ss_pred HHHHHHHEEEEEE
Q ss_conf 5787753027851
Q gi|254780334|r 229 VIEHMVDAVLYFE 241 (479)
Q Consensus 229 ~LeH~VD~vl~~e 241 (479)
....+.|-++.++
T Consensus 163 ~a~~~aDri~vm~ 175 (178)
T cd03229 163 EAARLADRVVVLR 175 (178)
T ss_pred HHHHHCCEEEEEE
T ss_conf 9998699999992
No 112
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=0.00024 Score=51.25 Aligned_cols=136 Identities=19% Similarity=0.286 Sum_probs=79.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH-H------
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003478899-9------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED-I------ 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~-i------ 158 (479)
-+.+|.++-+.|+-|+|||||+--++.-.....+. +++.+++-...-.....+++...++..++......+ +
T Consensus 22 ~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~ 100 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHH
T ss_conf 88799399998789979999999997685778788-99999998868488865789995687667126778986339899
Q ss_pred -----HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHH
Q ss_conf -----999973169828997216876654204455636799999999999753079789998630366543311457877
Q gi|254780334|r 159 -----IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHM 233 (479)
Q Consensus 159 -----l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~ 233 (479)
++..+ -.+|++++.|=.- ..+| |.+ .++....+.++++ .+.+++++-|.- ..++.+
T Consensus 101 kqrv~ia~al-~~~p~lllLDEPt----~gLD--~~~---~~~i~~~i~~l~~-~g~tvi~~tH~l--------~~~~~~ 161 (173)
T cd03230 101 KQRLALAQAL-LHDPELLILDEPT----SGLD--PES---RREFWELLRELKK-EGKTILLSSHIL--------EEAERL 161 (173)
T ss_pred HHHHHHHHHH-HCCCCEEEECCCC----CCCC--HHH---HHHHHHHHHHHHH-CCCEEEEECCCH--------HHHHHH
T ss_conf 9999999999-6499999990886----5799--999---9999999999996-899999992838--------999986
Q ss_pred HHEEEEEE
Q ss_conf 53027851
Q gi|254780334|r 234 VDAVLYFE 241 (479)
Q Consensus 234 VD~vl~~e 241 (479)
.|.++.++
T Consensus 162 ~dri~vl~ 169 (173)
T cd03230 162 CDRVAILN 169 (173)
T ss_pred CCEEEEEE
T ss_conf 99999993
No 113
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.99 E-value=0.00016 Score=52.56 Aligned_cols=136 Identities=22% Similarity=0.345 Sum_probs=74.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHCCCCCCCHHEECCCC-HHHH---
Q ss_conf 8578708999549875188999999999850398199998646---30478888752015775100003478-8999---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE---AIGQIRLRAQRLNTINSSVYIAIETN-VEDI--- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE---s~~Qi~~Ra~Rl~~~~~~i~~~~e~~-l~~i--- 158 (479)
-+.+|.++.|.|+.|+|||||+--++. +-+...--+++.+++ +...+...-.++|....+..+++..+ .+++
T Consensus 22 ~i~~Ge~~~ivGpSGsGKSTLL~~i~g-L~~p~~G~i~i~g~~i~~~~~~~~~~rr~iG~VFQ~~~L~p~ltv~eNV~~~ 100 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINL-LEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA 100 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEECCCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf 988998999999998449999999981-9999864999999999998156999867827996798758999199999999
Q ss_pred ---------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ---------------------------------------------99997316982899721687665420445563679
Q gi|254780334|r 159 ---------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 159 ---------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
++..+ -.+|++++.|=.. +.+|.. -
T Consensus 101 l~~~~~~~~~e~~~~a~~~L~~vgL~~~~~~~P~~LSGGqqQRVAIARAL-a~~P~ilL~DEPt----s~LD~~-----~ 170 (213)
T cd03262 101 PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-AMNPKVMLFDEPT----SALDPE-----L 170 (213)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHH-CCCCCEEEECCCC----CCCCHH-----H
T ss_conf 99976999999999999999868997887499444692999999999996-3799999970888----877989-----9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-+++...|.+++++ ++++++|-| .+.....+.|-++.++
T Consensus 171 ~~~i~~ll~~l~~~-g~T~i~VTH--------D~~~a~~~aDri~~l~ 209 (213)
T cd03262 171 VGEVLDVMKDLAEE-GMTMVVVTH--------EMGFAREVADRVIFMD 209 (213)
T ss_pred HHHHHHHHHHHHHC-CCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 99999999999862-999999998--------9999999689899997
No 114
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.99 E-value=5.5e-05 Score=55.90 Aligned_cols=98 Identities=15% Similarity=0.255 Sum_probs=69.3
Q ss_pred HHHHHHHCCC-C--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHE
Q ss_conf 2488886598-5--78708999549875188999999999850398199998646----304788887520157751000
Q gi|254780334|r 77 DELDRVTGGG-F--VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYI 149 (479)
Q Consensus 77 ~eLDrvLGGG-l--~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~ 149 (479)
.+|...++.- . .+-+++++.|+.|+||||-+--+|..+.+++.+|+.+++.- ..+|++..+++++++.-. .
T Consensus 59 ~~l~~~~~~~~~~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~--~ 136 (270)
T PRK06731 59 EDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--V 136 (270)
T ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEC--C
T ss_conf 99987507665467998189998889898899999999999867990899983888888999999999981995354--5
Q ss_pred ECCCCHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 034788999999973169828997216
Q gi|254780334|r 150 AIETNVEDIIATLITNEKPDLVIIDSI 176 (479)
Q Consensus 150 ~~e~~l~~il~~~i~~~~~~~vVIDSI 176 (479)
..+..+...+....+..+.|+++||.-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~DvilIDTA 163 (270)
T PRK06731 137 RDEAAMTRALTYFKEEARVDYILIDTA 163 (270)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 887899999999999769999999799
No 115
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.98 E-value=0.00022 Score=51.49 Aligned_cols=137 Identities=20% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH--------------------------------
Q ss_conf 857870899954987518899999999985039819999864630478--------------------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQI-------------------------------- 133 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi-------------------------------- 133 (479)
-+.+|...=|.|+.|+|||||+.-++.-. +...-.+++.|.+-..--
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 96489789998489898889999995656-78886289888405766530333045069951872246841019899742
Q ss_pred --------------HHHHHHCCCCCCCHHEE----CCCCHHHH-HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf --------------88875201577510000----34788999-999973169828997216876654204455636799
Q gi|254780334|r 134 --------------RLRAQRLNTINSSVYIA----IETNVEDI-IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 134 --------------~~Ra~Rl~~~~~~i~~~----~e~~l~~i-l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
..-.+.++++.+...-. +--...-+ +..+ -..+|+++|.|=.-+..... .|.
T Consensus 108 pl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA-L~~~PklLIlDEptSaLD~s--------iQa 178 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA-LIPEPKLLILDEPTSALDVS--------VQA 178 (252)
T ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHHH-HCCCCCEEEECCCHHHHCHH--------HHH
T ss_conf 430377537899999999984999899853942128168999999998-63688879953823441588--------999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999999975307978999863036654331145787753027851
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
++..-|..+.|+++.+.++|-| ...+++||.|.++.++
T Consensus 179 -~IlnlL~~l~~~~~lt~l~IsH--------dl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 179 -QILNLLLELKKERGLTYLFISH--------DLALVEHMCDRIAVMD 216 (252)
T ss_pred -HHHHHHHHHHHHCCCEEEEEEC--------CHHHHHHHHHHEEEEE
T ss_conf -9999999999861945999967--------2999998853525400
No 116
>pfam05625 PAXNEB PAXNEB protein. PAXNEB or PAX6 neighbour is found in several eukaryotic organisms. PAXNED is an RNA polymerase II Elongator protein subunit. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The HAP subcomplex is required for Elongator structural integrity and histone acetyltransferase activity. This protein family has a P-loop motif. However its sequence has degraded in many members of the family.
Probab=97.98 E-value=0.00065 Score=48.10 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=47.1
Q ss_pred CCCCCCCCCHHHHHHHCC--CCCCCCEEEEECCCCCCHHHHHH-HHHHHHHCCCCCEEEEECC
Q ss_conf 666323781248888659--85787089995498751889999-9999985039819999864
Q gi|254780334|r 68 EESRIQTHIDELDRVTGG--GFVRGSVILVGGDPGIGKSTLLM-QTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGG--Gl~~Gs~~Li~G~PGvGKSTL~L-qia~~~a~~g~~vlYvS~E 127 (479)
...-.+||++.||.+||| ||+-|++.||-=+--.-=+.+++ -|+++..-.++.++|++..
T Consensus 22 ~q~~tSTG~~sLD~iLgGh~GlPlGs~lLIEEd~~~~ya~~LlkyF~AEGvv~~h~v~v~s~p 84 (353)
T pfam05625 22 GQPTTSTGTPSLDKILGGHGGLPLGSSLLIEEDGTTDFASVLLRYFAAEGVVQNHHVFVASLP 84 (353)
T ss_pred CCEEEECCCCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 987673287217877178877654537999745877279999999987200358769996688
No 117
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.97 E-value=0.00015 Score=52.76 Aligned_cols=134 Identities=21% Similarity=0.308 Sum_probs=80.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHH-------
Q ss_conf 8578708999549875188999999999850398199998646304788887520157751000034788999-------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDI------- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i------- 158 (479)
-+.+|..+.|.|+.|+|||||+--++.-+....+. +|+.+++-...-....++++....+.+++..+-.+++
T Consensus 24 ~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~p~~G~-i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgG 102 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE-EEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHH
T ss_conf 98699999999999875999999998617667886-99999988997899997208983556364541998628888999
Q ss_pred ------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHH
Q ss_conf ------99997316982899721687665420445563679999999999975307978999863036654331145787
Q gi|254780334|r 159 ------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEH 232 (479)
Q Consensus 159 ------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH 232 (479)
++..+ -.+|++++.|=.- +.+|. .+ -++....|..+++ +.++++|-|- ...+++
T Consensus 103 qkqRv~iAral-~~~p~ililDEpt----s~LD~--~t---~~~i~~~l~~~~~--~~Tvi~itH~--------~~~l~~ 162 (178)
T cd03247 103 ERQRLALARIL-LQDAPIVLLDEPT----VGLDP--IT---ERQLLSLIFEVLK--DKTLIWITHH--------LTGIEH 162 (178)
T ss_pred HHHHHHHHHHH-HHCCCEEEECCCC----CCCCH--HH---HHHHHHHHHHHCC--CCEEEEEECC--------HHHHHH
T ss_conf 99999999999-6497976722865----56998--99---9999999999839--9999998058--------989986
Q ss_pred HHHEEEEEE
Q ss_conf 753027851
Q gi|254780334|r 233 MVDAVLYFE 241 (479)
Q Consensus 233 ~VD~vl~~e 241 (479)
+|-++.++
T Consensus 163 -~D~Iivl~ 170 (178)
T cd03247 163 -MDKILFLE 170 (178)
T ss_pred -CCEEEEEE
T ss_conf -99999998
No 118
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.97 E-value=0.00027 Score=50.91 Aligned_cols=136 Identities=21% Similarity=0.317 Sum_probs=74.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCC--HHEECCCCHHHH----
Q ss_conf 85787089995498751889999999998503981999986463-04788887520157751--000034788999----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSS--VYIAIETNVEDI---- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~i---- 158 (479)
-+.+|.++-|.|+-|+|||||+--++.-.....+. +++.+++- ....+.++.+++....+ ..++..+-.+++
T Consensus 23 ~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e~i~~~~ 101 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL 101 (211)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHH
T ss_conf 88499799998899998999999996467798887-78999999979989984038999778325305586999999999
Q ss_pred -------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -------------------------------------------9999731698289972168766542044556367999
Q gi|254780334|r 159 -------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 159 -------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
++.. --.+|++++.|=.. ..+| +.+ -+
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iAra-l~~~P~ililDEPT----sgLD--~~~---~~ 171 (211)
T cd03225 102 ENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV-LAMDPDILLLDEPT----AGLD--PAG---RR 171 (211)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC--HHH---HH
T ss_conf 98699999999999999998699466638954599989999999999-97599999997985----5589--999---99
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
++...|.++.+ .+++++++-|- ...++.+.|-++.++
T Consensus 172 ~i~~~l~~l~~-~g~tii~itHd--------l~~~~~~~dri~~m~ 208 (211)
T cd03225 172 ELLELLKKLKA-EGKTIIIVTHD--------LDLLLELADRVIVLE 208 (211)
T ss_pred HHHHHHHHHHH-CCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 99999999997-89999999259--------999999799999982
No 119
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=0.00026 Score=50.96 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHCCCCCCC--HHE
Q ss_conf 3781248888659857870899954987518899999999985039819999864630-4788887520157751--000
Q gi|254780334|r 73 QTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-GQIRLRAQRLNTINSS--VYI 149 (479)
Q Consensus 73 ~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-~Qi~~Ra~Rl~~~~~~--i~~ 149 (479)
+.|..-||.+ .=-+.+|.++.|.|+-|+|||||+..++.-..-..+ .+++.+.+-. ...+....++|....+ ..+
T Consensus 15 ~~g~~aL~~v-s~~i~~Ge~~aiiG~NGsGKSTLl~~l~Gl~~p~~G-~I~i~G~~i~~~~~~~lr~~iG~vfQ~p~~ql 92 (273)
T PRK13647 15 PDGTKALDGV-SLVIPEGSKTAILGPNGAGKSTLLLHLNGIYTAQRG-RVKVMGKVVNEENIRWIRKKVGLVFQDPDDQL 92 (273)
T ss_pred CCCCEEEEEE-EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHCEEEECCCHHHH
T ss_conf 9988898811-789889989999999997599999999669888861-99999999996898999875248810702430
Q ss_pred ECCC------------------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 0347------------------------------88999-----------------999973169828997216876654
Q gi|254780334|r 150 AIET------------------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQ 182 (479)
Q Consensus 150 ~~e~------------------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~ 182 (479)
+..+ ++++. ++. +--.+|++++.|=-. +
T Consensus 93 ~~~tV~e~v~fg~~~~g~~~~e~~~rv~~~L~~~~l~~~~~~~p~~LSGGqkqRvaiA~-aL~~~P~lliLDEPt----a 167 (273)
T PRK13647 93 FSSTVWDDVAFGPQNLELDKKEILRRVEEALKAVDMWDLREKAPYHLSYGQKKRVAIAG-VLAMEPDIIVLDEPM----A 167 (273)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHHCCCEEEEECCC----C
T ss_conf 52419999999998859999999999999998779587664793339998999999999-998199999997976----5
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 20445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 183 TAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 183 ~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+| +..-++....|.++. +.+.+++++-|- ...+..+.|-|+.++
T Consensus 168 gLD-----p~~~~~l~~~l~~L~-~~G~Tvi~vtHd--------l~~~~~~aDrvivl~ 212 (273)
T PRK13647 168 YLD-----PRGKEELTAILNRLN-NEGKTVIVATHD--------VDLALEWADQVVVLN 212 (273)
T ss_pred CCC-----HHHHHHHHHHHHHHH-HCCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 799-----999999999999998-489999999417--------899999699999998
No 120
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.96 E-value=0.00033 Score=50.22 Aligned_cols=137 Identities=15% Similarity=0.232 Sum_probs=76.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHCCCCCCCHHEE--------------
Q ss_conf 8578708999549875188999999999850398199998646304-7888875201577510000--------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRAQRLNTINSSVYIA-------------- 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra~Rl~~~~~~i~~~-------------- 150 (479)
=+.+|.++-|.|+-|+|||||+-.++.-+.-..+. +++.+++-.. ..+.++.+++....+..+.
T Consensus 29 ~I~~Ge~~~iiGpNGaGKSTLlk~i~Gll~p~~G~-I~l~g~~i~~~~~~~~~~~ig~v~Q~~~~~~~~tv~e~v~~g~~ 107 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGH-VWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRY 107 (265)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 98599799999998839999999997498888529-99999995748978987655576013568877678998862234
Q ss_pred ---------CC------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ---------34------------788999-----------------9999731698289972168766542044556367
Q gi|254780334|r 151 ---------IE------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 151 ---------~e------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
.+ .++++. ++..+ -.+|++++.|=-. +.+| ..
T Consensus 108 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL-~~~P~illLDEPt----s~LD-----~~ 177 (265)
T PRK10253 108 PHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL-AQETAIMLLDEPT----TWLD-----IS 177 (265)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC-----HH
T ss_conf 035300135388999999999883998786488101998899999999998-5699989981887----6689-----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.-.++...|.++.|+.+++++++-|- ......+.|.|+.+.
T Consensus 178 ~~~~i~~~i~~l~~~~g~tvi~vtHd--------l~~a~~~adrvivl~ 218 (265)
T PRK10253 178 HQIDLLELLSELNREKGYTLAAVLHD--------LNQACRYASHLIALR 218 (265)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 99999999999998509899999359--------999998699999998
No 121
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.95 E-value=0.00015 Score=52.75 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=74.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-----CCHHHHHHHHHHCCCCCCC--HHEECCCCHHH-
Q ss_conf 857870899954987518899999999985039819999864-----6304788887520157751--00003478899-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE-----EAIGQIRLRAQRLNTINSS--VYIAIETNVED- 157 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E-----Es~~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~- 157 (479)
=+.+|.++.|.|+.|+|||||+..++.-+.-..+.+. +.+. .....++....++|....+ ..++..+-.++
T Consensus 16 ~i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P~~G~i~-~~g~~i~~~~~~~~~~~lr~~vG~VfQ~P~~ql~~~tV~e~i 94 (276)
T PRK13634 16 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLKPTKGTVT-IGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDI 94 (276)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE-ECCEECCCCCCHHHHHHHHHCEEEEEECCCHHCCHHHHHHHH
T ss_conf 9989989999999996999999999749998874999-999988688866668998732689998762001551599999
Q ss_pred -----------------------------------------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC
Q ss_conf -----------------------------------------------999997316982899721687665420445563
Q gi|254780334|r 158 -----------------------------------------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGT 190 (479)
Q Consensus 158 -----------------------------------------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gs 190 (479)
.++. +-..+|++++.|=..+ .+|
T Consensus 95 afg~~~~g~~~~e~~~rv~~~L~~vgL~~~~~~r~p~~LSGGqkQRVaIA~-aLa~~P~iLllDEPTs----~LD----- 164 (276)
T PRK13634 95 CFGPMNFGVSEEEAKQKAKEMIELVGLPEELLARSPFELSGGQMRRVAIAG-VLAMEPEVLVLDEPTA----GLD----- 164 (276)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEECCCCC----CCC-----
T ss_conf 999998699999999999999997699877861890018999999999999-9972999899769854----279-----
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 679999999999975307978999863036654331145787753027851
Q gi|254780334|r 191 VIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 191 vsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...-+++...|.++.++.++++++|-|- ...+..+.|.|+.++
T Consensus 165 ~~~~~~i~~ll~~L~~e~g~Tii~vTHd--------l~~~~~~aDrvivm~ 207 (276)
T PRK13634 165 PKGRKEIMEMFYKLHKEKGLTTVLVTHS--------MEDAARYADQIVVMH 207 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 9999999999999999619999998679--------999999799999998
No 122
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=0.00036 Score=50.00 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=61.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHC----CCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHH
Q ss_conf 8708999549875188999999999850----398199998646----30478888752015775100003478899999
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAY----KKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIA 160 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~----~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~ 160 (479)
++.++.+.|++|+||||=+.-+|+.... ++.+|.+++..- ..+|++..|+.++++... ..+.+++..
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v-----~~~~~dl~~ 247 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA-----IESFKDLKE 247 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEE-----ECCHHHHHH
T ss_conf 762899989988757879999999999862676773799980787588999999999997880698-----578899999
Q ss_pred HHHHCCCCCEEEECHH
Q ss_conf 9973169828997216
Q gi|254780334|r 161 TLITNEKPDLVIIDSI 176 (479)
Q Consensus 161 ~~i~~~~~~~vVIDSI 176 (479)
.+.+..+.|+|+||..
T Consensus 248 ~l~~~~~~D~IlIDTA 263 (388)
T PRK12723 248 EITQSKDFDLVLIDTI 263 (388)
T ss_pred HHHHHCCCCEEEEECC
T ss_conf 9997249999999589
No 123
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=0.0003 Score=50.59 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=74.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHH
Q ss_conf 8578708999549875188999999999850398199998646304-788887520157751000034788999999973
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRAQRLNTINSSVYIAIETNVEDIIATLIT 164 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~ 164 (479)
-+.+|.++.|.|+.|+|||||+-.++.-.....+. +++.+.+-.. ......++++.... +--.+...-.+ +..+
T Consensus 21 ~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~Q--LSgGqkqrv~i-A~al- 95 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE-ILIDGKDIAKLPLEELRRRIGYVPQ--LSGGQRQRVAL-ARAL- 95 (157)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCCCCCCC--CCHHHHHHHHH-HHHH-
T ss_conf 98799799998788999899999995884799628-9999999997999999940608766--88699999999-9999-
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-.+|++++.|-.. +.+|. ...++....+.+++++ +.+++++-|- +...+++.|.++.++
T Consensus 96 ~~~p~ililDEPt----sgLD~-----~~~~~l~~~i~~l~~~-g~tii~vtH~--------~~~~~~~~d~v~~~~ 154 (157)
T cd00267 96 LLNPDLLLLDEPT----SGLDP-----ASRERLLELLRELAEE-GRTVIIVTHD--------PELAELAADRVIVLK 154 (157)
T ss_pred HCCCCEEEEECCC----CCCCH-----HHHHHHHHHHHHHHHC-CCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 7099999996987----66899-----9999999999999968-9999999089--------999999799999974
No 124
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.94 E-value=0.00064 Score=48.14 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHCCCCCC------------CHHE---
Q ss_conf 857870899954987518899999999985039819999864630-478888752015775------------1000---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-GQIRLRAQRLNTINS------------SVYI--- 149 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-~Qi~~Ra~Rl~~~~~------------~i~~--- 149 (479)
-+.+|.++-|.|+-|+|||||+--++....-..+++ ++.+++-. .....++.+++.... ++.+
T Consensus 24 ~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~~G~I-~~~g~~i~~~~~~~~~~~~g~v~Q~~~l~~~~tv~e~v~~g~~ 102 (257)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELPPSSGEV-RLFGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRY 102 (257)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EEECEECCCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 986998999999999879999999856757787569-9936576758999997546586123667899839999997787
Q ss_pred ----------------ECCCCHHH-----------------HHHHHHH-----CCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf ----------------03478899-----------------9999973-----169828997216876654204455636
Q gi|254780334|r 150 ----------------AIETNVED-----------------IIATLIT-----NEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 150 ----------------~~e~~l~~-----------------il~~~i~-----~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
+...++.+ .++..+. ..+|++++.|=-. +.+| +
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~q~~~~~~~P~lLlLDEPt----sgLD-----~ 173 (257)
T PRK13548 103 PHTLSQKEDDQLVAAALAQVDLAHLAGRSYPTLSGGEQQRVQLARVLAQLWEPGGGPRWLLLDEPT----SALD-----L 173 (257)
T ss_pred HCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC----CCCC-----H
T ss_conf 658998999999999998769902416981669999999999999996200104799889988987----6689-----9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 79999999999975307978999863036654331145787753027851
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...+++...|.++++ .+.+++++-|- ......+.|-|+.+.
T Consensus 174 ~~~~~i~~ll~~l~~-~g~tvl~vtHd--------l~~~~~~aDrv~vl~ 214 (257)
T PRK13548 174 AHQHHVLRLARQLAE-RGAAVIVVLHD--------LNLAARYADRIVLLH 214 (257)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 999999999999985-59999999278--------899999799999998
No 125
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=97.94 E-value=0.00015 Score=52.64 Aligned_cols=201 Identities=17% Similarity=0.257 Sum_probs=104.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHH--HHCCCCCCCHHEECCCCHHHHHHHH-HHC
Q ss_conf 08999549875188999999999850--398199998646304788887--5201577510000347889999999-731
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAY--KKHRITYVSGEEAIGQIRLRA--QRLNTINSSVYIAIETNVEDIIATL-ITN 165 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~--~g~~vlYvS~EEs~~Qi~~Ra--~Rl~~~~~~i~~~~e~~l~~il~~~-i~~ 165 (479)
++++|.|.||+|||-++++++..++. .+..+.|+++-.+...+-..+ .+++......+.. .+. .+... ...
T Consensus 2 ~v~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~~~~~~~~~~~-~~~---fi~~~~~~~ 77 (348)
T pfam09848 2 AVFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDLKVRKKKLFRK-PTS---FINNLHKAP 77 (348)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHCCCCCC-CHH---HHCCCCCCC
T ss_conf 7999977799389999999999986440268208995786699999999860412001020007-252---316523579
Q ss_pred CCCCEEEECHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEE--EECCCCCCCCHHHHHHHHHEE--EEE
Q ss_conf 698289972168766542044-556367999999999997530797899986--303665433114578775302--785
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAES-SPGTVIQVRTSVQAMIQYAKKNGVAMVLVG--HVTKEGQIAGPRVIEHMVDAV--LYF 240 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s-~~GsvsQvre~~~~L~~~AK~~~i~vilig--hvTK~G~iAGp~~LeH~VD~v--l~~ 240 (479)
...+++|+|=-|-+.+..-.. ......|+ ..+-+...++|++++ |+-+.+++.....++++.... -..
T Consensus 78 ~~~dvvivDEAhRl~~k~~~~~~~~~~~ql-------~~i~~~a~v~V~~~D~~Q~i~~~e~g~~~~l~~~~~~~~~~~~ 150 (348)
T pfam09848 78 PHEDVVIVDEAHRLWTKSDLYFNFSGPNQL-------DEIMKRAKVVVFFIDEGQEINTGEIGTIEELKKIAAKWPAEIY 150 (348)
T ss_pred CCCCEEEEEHHHHHHHCCCCCCCCCCHHHH-------HHHHHHCCEEEEEECCCCEECCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 867789983178665433655677857999-------9999752859999879848811137689999999986897047
Q ss_pred ECCCCCCCCCCEEEE------EEEECCCCCCCEE-EEEECCCCCEEECCHHHHHHC--CCC--CCCCCEEEEEEEC
Q ss_conf 155566654421567------6320256765127-998515663110140455511--476--6767348997304
Q gi|254780334|r 241 EGGTRNTQYDYRILR------SVKNRFGPTDEIG-VFEMSDKGLQEVSDPSKIFLS--DRD--STSPGTAVFAGIE 305 (479)
Q Consensus 241 ege~~~~~~~~R~Lr------~~KNRfG~t~e~g-vf~m~~~Gl~~v~~ps~~fl~--~~~--~~~~Gs~v~~~~e 305 (479)
+ .+-..++|.-+ -+++-...-.+.. -+.-...-+.-.++|.++.-. ++. ...+|.+.+-.++
T Consensus 151 ~---~~L~~qfR~~~s~~~~~wv~~lL~~~~~~~~~~~~~~yd~~if~~~~~l~~~i~~k~~~~~~~rlvA~~~~~ 223 (348)
T pfam09848 151 E---LHLSSQFRSGGSDDYLAWVDALLDNRDIAAKPLSDKDYDFKVFDDPEEMRAAIKEKNRGGGRARLVAGYDWP 223 (348)
T ss_pred E---EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9---865501045786799999999854776667654578986899899999999999962668856999975650
No 126
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.93 E-value=0.00021 Score=51.68 Aligned_cols=133 Identities=23% Similarity=0.344 Sum_probs=85.1
Q ss_pred CEECCCCCCCCCCCCCCCCHHHH---HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 40313334556663237812488---886598578708999549875188999999999850398199998646304788
Q gi|254780334|r 58 LFMLSEESIEEESRIQTHIDELD---RVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIR 134 (479)
Q Consensus 58 ~~~l~~~~~~~~~Ri~TGi~eLD---rvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~ 134 (479)
-..+.|+..++..|...=-.-++ ..-.|+..+| ..|.|++|+|||.|+--+|..++++|..|+|+..-+=...++
T Consensus 124 ~as~~d~~~~d~~R~~a~~~a~~F~~~y~~~~~~kG--lyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK 201 (306)
T PRK08939 124 QATLADIDLDDLDRLDALMAALDFLEAYKPGEKVKG--LYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELK 201 (306)
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
T ss_conf 098986488977899999999999997376988877--889899999899999999999998699299987599999999
Q ss_pred HHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHCCCEEE
Q ss_conf 8875201577510000347889999999731698289972168766542044556367999-999999997530797899
Q gi|254780334|r 135 LRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR-TSVQAMIQYAKKNGVAMV 213 (479)
Q Consensus 135 ~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr-e~~~~L~~~AK~~~i~vi 213 (479)
.-. ...+.++.++. + .+.+++|+|.|-+=... + =+| ++...+.++=...+.|+|
T Consensus 202 ~s~-------------~d~s~~~~i~~-~--k~~~vLiLDDiGaE~~t---~------W~rd~vl~~IL~~Rm~~~lPTf 256 (306)
T PRK08939 202 NAI-------------SDGSVKEKIDA-V--KEAPVLMLDDIGAEQMS---S------WVRDEVLGVILQYRMQEELPTF 256 (306)
T ss_pred HHH-------------CCCCHHHHHHH-H--HCCCEEEEECCCCCCCC---H------HHHHHHHHHHHHHHHHCCCCEE
T ss_conf 986-------------48988999999-8--44998998444654267---7------7899899999999997499979
Q ss_pred EEEE
Q ss_conf 9863
Q gi|254780334|r 214 LVGH 217 (479)
Q Consensus 214 ligh 217 (479)
+.--
T Consensus 257 fTSN 260 (306)
T PRK08939 257 FTSN 260 (306)
T ss_pred EECC
T ss_conf 9779
No 127
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=97.92 E-value=0.00027 Score=50.93 Aligned_cols=153 Identities=17% Similarity=0.246 Sum_probs=84.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCH--HE----------
Q ss_conf 8578708999549875188999999999850398199998646----3047888875201577510--00----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSV--YI---------- 149 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i--~~---------- 149 (479)
=+.+|.++-|.|+.|+|||||+.-++.-..-.. -.+++.+++ +..+.+....+++....+. .+
T Consensus 34 ~i~~GE~l~ivGeSGsGKSTL~r~i~gl~~p~s-G~I~~~g~~l~~~~~~~~~~~rr~i~~VfQ~~~~slnP~~tv~~~i 112 (266)
T PRK10419 34 TLKSGETVALLGRSGCGKSTLARLLVGLESPSQ-GNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIL 112 (266)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-EEEEECCEECCCCCHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHH
T ss_conf 888998999999999779999999966999996-2998899956758999999975473899739136368164899999
Q ss_pred ----------------------ECCCCH-----------------HH-HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf ----------------------034788-----------------99-99999731698289972168766542044556
Q gi|254780334|r 150 ----------------------AIETNV-----------------ED-IIATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 150 ----------------------~~e~~l-----------------~~-il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
+....+ +- .++.. --.+|++++.|=..+....
T Consensus 113 ~epl~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~yP~eLSGGq~QRVaIArA-L~~~P~lLi~DEPtsaLD~------- 184 (266)
T PRK10419 113 REPLRHLLSLDKAERLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARA-LAVEPKLLILDEAVSNLDL------- 184 (266)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCH-------
T ss_conf 99999814999999999999999874998898717843379278777898666-4069878999688653699-------
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf 36799999999999753079789998630366543311457877530278515556665442156763202567651279
Q gi|254780334|r 190 TVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGV 269 (479)
Q Consensus 190 svsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv 269 (479)
.+| .++...|.++.++.++++++|-| ....+.++.|.|+.+.. . |+... |++.|+-.
T Consensus 185 -~~q-~~il~ll~~l~~~~g~t~i~ITH--------Dl~~a~~~adri~Vm~~-----G---~iVE~-----G~~~~~~~ 241 (266)
T PRK10419 185 -VLQ-AGVIRLLKKLQQQFGTACLFITH--------DLRLVERFCQRVMVMDN-----G---QIVET-----QVVGDKLT 241 (266)
T ss_pred -HHH-HHHHHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEEC-----C---EEEEE-----CCCCCCCC
T ss_conf -999-99999999999975989999889--------99999996898999989-----8---89998-----65630035
Q ss_pred E
Q ss_conf 9
Q gi|254780334|r 270 F 270 (479)
Q Consensus 270 f 270 (479)
|
T Consensus 242 ~ 242 (266)
T PRK10419 242 F 242 (266)
T ss_pred C
T ss_conf 7
No 128
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=9.9e-05 Score=54.05 Aligned_cols=137 Identities=19% Similarity=0.235 Sum_probs=73.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCC--HHEECCCC-------
Q ss_conf 985787089995498751889999999998503981999986463-04788887520157751--00003478-------
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSS--VYIAIETN------- 154 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~--i~~~~e~~------- 154 (479)
=-+.+|..+.|.|+-|+|||||+.-++.-+--..+++ ++.|++- ...+...+.+++....+ ..++..+-
T Consensus 31 l~i~~Ge~vaivG~nGsGKSTLlk~l~Gll~p~~G~I-~v~G~~i~~~~~~~~~~~ig~VfQ~Pd~q~~~~tV~e~iafg 109 (273)
T PRK13632 31 FTINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI-KIFGITISKENLKYLRKKIGIIFQNPDNQFIGITVEDDIAFG 109 (273)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEEEEECCCHHCCCCCHHHHHHHH
T ss_conf 8984998999999999869999999973877888759-999999996898998743569987710202775178888867
Q ss_pred -----------------------HHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf -----------------------8999-----------------999973169828997216876654204455636799
Q gi|254780334|r 155 -----------------------VEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 155 -----------------------l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
+++. ++. +-..+|++++.|=-. +.+|. ..-
T Consensus 110 l~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiA~-aLa~~P~iliLDEPT----s~LD~-----~~~ 179 (273)
T PRK13632 110 LENKKIPPKKMKDIIDDLAKKVGMEDYLKKEPQNLSGGQKQRVAIAS-VLALNPEIIIFDEST----SMLDP-----KGK 179 (273)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHH-HHHCCCCEEEEECCC----CCCCH-----HHH
T ss_conf 86679999999999999999869888774782009999999999999-997199999980775----56998-----999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999999975307978999863036654331145787753027851
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
++....|.++.++.+.++++|-|--- . .. ..|.|+.++
T Consensus 180 ~~l~~~l~~l~~~~g~TvI~iTHd~~---~-----~~-~aDrv~vm~ 217 (273)
T PRK13632 180 REIKKIMVDLRKDRKKTLISITHDMD---E-----AI-LADKVIVFS 217 (273)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECHH---H-----HH-CCCEEEEEE
T ss_conf 99999999999846989999942888---9-----97-199999998
No 129
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.92 E-value=0.00022 Score=51.46 Aligned_cols=137 Identities=17% Similarity=0.271 Sum_probs=78.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHH--EECCCCH----
Q ss_conf 8578708999549875188999999999850398199998646----30478888752015775100--0034788----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVY--IAIETNV---- 155 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~--~~~e~~l---- 155 (479)
-+.+|.++-|.|+.|+|||||+--++.-.....+ .+++.+++ +..+.+.+...++....+.+ +.....+
T Consensus 27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~ig~v~Q~~~~~l~p~~tv~e~v 105 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI 105 (228)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHHCCCEEEEECCCHHHCCCCCCHHHHH
T ss_conf 9869989999999998699999999728987886-699899646779999999724637999328134128647499999
Q ss_pred ------------------------------HHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCC
Q ss_conf ------------------------------999-----------------999973169828997216876654204455
Q gi|254780334|r 156 ------------------------------EDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSP 188 (479)
Q Consensus 156 ------------------------------~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~ 188 (479)
++. ++.. --.+|++++.|=..+. +|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~p~~LSGGq~QRv~iAra-L~~~P~iLllDEPTs~----LD~-- 178 (228)
T cd03257 106 AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA-LALNPKLLIADEPTSA----LDV-- 178 (228)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCC----CCH--
T ss_conf 999998278752899999999997138985998744863279889999998211-0479999999488764----799--
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 63679999999999975307978999863036654331145787753027851
Q gi|254780334|r 189 GTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 189 GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.--+++...|.++.++.++++++|-| -....+.+.|.|+.++
T Consensus 179 ---~~~~~i~~~l~~l~~~~~~tii~vtH--------d~~~~~~~aDrv~vm~ 220 (228)
T cd03257 179 ---SVQAQILDLLKKLQEELGLTLLFITH--------DLGVVAKIADRVAVMY 220 (228)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf ---99999999999999850989999868--------9999999699999997
No 130
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=0.00047 Score=49.13 Aligned_cols=150 Identities=17% Similarity=0.276 Sum_probs=83.9
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHHHCCCCCCC--
Q ss_conf 237812488886598578708999549875188999999999850398199998646---304788887520157751--
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE---AIGQIRLRAQRLNTINSS-- 146 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE---s~~Qi~~Ra~Rl~~~~~~-- 146 (479)
++.|..-||.+ .=-+.+|.++-|.|+-|+|||||+..++.-+....+.+ ++.+++ +...+.....+++....+
T Consensus 15 Y~~g~~aL~~i-sl~I~~Ge~~aiiG~NGaGKSTLl~~i~Gll~p~~G~I-~~~G~~i~~~~~~~~~~r~~ig~vfQ~p~ 92 (285)
T PRK13636 15 YSDGTHALKGI-NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI-LFDGKPIDYSRKGLMKLRESVGMVFQDPD 92 (285)
T ss_pred ECCCCEEEEEE-EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCHHHHHHHHHHEEEEEECCC
T ss_conf 09998887613-78987998999999999809999999965988886089-99999987443449999874069970764
Q ss_pred HHEECCCC------------------------------HHHH-----------------HHHHHHCCCCCEEEECHHHHH
Q ss_conf 00003478------------------------------8999-----------------999973169828997216876
Q gi|254780334|r 147 VYIAIETN------------------------------VEDI-----------------IATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 147 i~~~~e~~------------------------------l~~i-----------------l~~~i~~~~~~~vVIDSIQtl 179 (479)
..++..+- +++. ++. +-..+|++++.|=-.+
T Consensus 93 ~~l~~~tV~e~v~~g~~~~g~~~~e~~~rv~~~L~~~gl~~~~~~~~~~LSGGqkqRvaIA~-aLa~~P~iLlLDEPTa- 170 (285)
T PRK13636 93 NQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG-VLVMEPKVLVLDEPTA- 170 (285)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCC-
T ss_conf 24475749999999999859999999999999998759886652880019999999999999-9974998999978755-
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 65420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 180 WSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 180 ~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+| +...+++...|.++.++.+++++++-|- ...+..+.|-++.++
T Consensus 171 ---gLD-----p~~~~~i~~ll~~l~~e~g~TiilvtHd--------~~~v~~~aDrvivl~ 216 (285)
T PRK13636 171 ---GLD-----PMGVSEIMKLLVEMQKELGLTIIIATHD--------IDIVPLYCDNVFVMK 216 (285)
T ss_pred ---CCC-----HHHHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf ---599-----9999999999999998449899999488--------999999699999998
No 131
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=97.91 E-value=0.0012 Score=46.08 Aligned_cols=161 Identities=21% Similarity=0.272 Sum_probs=92.1
Q ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCCCHHEE
Q ss_conf 7812488886598578708999549875188999999999850398199998646304788887520---1577510000
Q gi|254780334|r 74 THIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINSSVYIA 150 (479)
Q Consensus 74 TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~~i~~~ 150 (479)
||+.-+|-++ =+.+|+-.+|.|+||+|||+|+.+++.+... +..++|+.--|..+.+..-.+.+ +.......+.
T Consensus 1 TGi~~ID~l~--pig~GQr~~I~g~~g~GKt~l~~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~~~~~~~~~~t~vv~ 77 (213)
T pfam00006 1 TGIRAIDLLL--PIGKGQRIGIFGGSGTGKTVLLGMIARNAKA-DVVEVYVLIGERGREVAEFIEELLGEGALKRTVVVA 77 (213)
T ss_pred CCCCEEECCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9840002016--6457888778789999889999999985661-893599813777799999999752137665069998
Q ss_pred CCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHHHH--HH----------CCCCCCHHHHHHHHHHHHHHH-
Q ss_conf 3478---89---------99999973169828997216876654--20----------445563679999999999975-
Q gi|254780334|r 151 IETN---VE---------DIIATLITNEKPDLVIIDSIQTLWSQ--TA----------ESSPGTVIQVRTSVQAMIQYA- 205 (479)
Q Consensus 151 ~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~~~--~~----------~s~~GsvsQvre~~~~L~~~A- 205 (479)
+..+ .+ .+-+...++.+.-++++||+...... ++ .+.|+++. ....+|..-|
T Consensus 78 ~~~d~~~~~r~~~~~~a~~~AEyf~~~G~dVlvi~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~---~~~~~l~ERag 154 (213)
T pfam00006 78 ATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPPGREGYPGSLF---SDLARLLERAG 154 (213)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH---HHHHHHHHHHH
T ss_conf 468898789999999999999999976996899837805999998765001479985456391788---88799998753
Q ss_pred H---HCCCEEEEEEEECCCCCCCCHH--HHHHHHHEEEEEE
Q ss_conf 3---0797899986303665433114--5787753027851
Q gi|254780334|r 206 K---KNGVAMVLVGHVTKEGQIAGPR--VIEHMVDAVLYFE 241 (479)
Q Consensus 206 K---~~~i~vilighvTK~G~iAGp~--~LeH~VD~vl~~e 241 (479)
+ .--++.|-+-.+ ..+.+..|- .+.-+.|..++|+
T Consensus 155 ~~~~~GSiT~l~tv~~-~~~d~~dpi~~~~~~~~dg~ivLs 194 (213)
T pfam00006 155 KVEGGGSITALPTVLV-PGGDITDPIPDNTISITDGQIVLS 194 (213)
T ss_pred CCCCCCCEEEEEEEEE-CCCCCCCCHHHHHHHHCCEEEEEC
T ss_conf 4688863478889980-488867515676521135599996
No 132
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00023 Score=51.36 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=66.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 708999549875188999999999850398199998646----3047888875201577510000347889999999731
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
-+.+-+.||.|+||||=.-.+|+.+...+.+|.+|+..- ..+|++..|+.|+++-.-. ..+.+++..+..+-+.
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV--~dp~eL~~AL~~lkdk 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV--RDEAAMTRALTYFKEE 318 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEE--CCHHHHHHHHHHHHHC
T ss_conf 71799989999888999999999986169808999806634769999999999849943996--8889999999987633
Q ss_pred CCCCEEEECHH
Q ss_conf 69828997216
Q gi|254780334|r 166 EKPDLVIIDSI 176 (479)
Q Consensus 166 ~~~~~vVIDSI 176 (479)
.+.|++.||..
T Consensus 319 a~~DLILIDTA 329 (436)
T PRK11889 319 ARVDYILIDTA 329 (436)
T ss_pred CCCCEEEEECC
T ss_conf 68888999298
No 133
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=97.91 E-value=0.00019 Score=51.93 Aligned_cols=167 Identities=17% Similarity=0.255 Sum_probs=98.0
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCCC
Q ss_conf 63237812488886598578708999549875188999999999850398199998646304788887520---157751
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINSS 146 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~~ 146 (479)
+-+.|||.-+|-++ =+.+|+=.+|.|++|+|||+|+++...+-...+..|+|+.--|..+.+..-.+++ +.....
T Consensus 145 epL~TGIkaID~l~--PiGrGQR~lI~Gd~gvGKTtl~~d~Iinqk~~~vicVyvaIGeR~reV~~~i~~l~~~gam~~T 222 (501)
T CHL00059 145 EPLQTGLIAIDSMI--PIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYT 222 (501)
T ss_pred CCCCCCCEEEECCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCEEE
T ss_conf 42323421110036--7667756677557884477999999985246884899998556277899999999756971036
Q ss_pred HHEECCCC---H---------HHHHHHHHHCCCCCEEEECHHHHHHH------------HHHCCCCCCHHHHHHHHHHHH
Q ss_conf 00003478---8---------99999997316982899721687665------------420445563679999999999
Q gi|254780334|r 147 VYIAIETN---V---------EDIIATLITNEKPDLVIIDSIQTLWS------------QTAESSPGTVIQVRTSVQAMI 202 (479)
Q Consensus 147 i~~~~e~~---l---------~~il~~~i~~~~~~~vVIDSIQtl~~------------~~~~s~~GsvsQvre~~~~L~ 202 (479)
+.+.+..+ . -.+-+...++.+--++|+|++..... +.-.+.||++.- ...+|.
T Consensus 223 vvV~Atadepa~lr~~Apyaa~aIAEyFrdqGkdVLlv~DdLTr~A~A~REisLllgrPPgregYPgdVFy---lhsrLl 299 (501)
T CHL00059 223 IVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFY---LHSRLL 299 (501)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH---HHHHHH
T ss_conf 99961799999999999999999999999779828999868269889999989864899976678962887---857898
Q ss_pred HHH-HHC------CCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEEC
Q ss_conf 975-307------9789998630366543311--457877530278515
Q gi|254780334|r 203 QYA-KKN------GVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFEG 242 (479)
Q Consensus 203 ~~A-K~~------~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~eg 242 (479)
.-| |-+ -+|.+-+- -|..|.+..| ..+--+.|.-++|+-
T Consensus 300 ERa~kl~~~~ggGSiTalpiv-et~~~D~s~yIptnviSItDGqI~L~~ 347 (501)
T CHL00059 300 ERAAKLSSQLGEGSMTALPIV-ETQSGDVSAYIPTNVISITDGQIFLSA 347 (501)
T ss_pred HHHHHCCCCCCCEEEEEEEEE-EECCCCCCCCCCHHHHHHCCCEEEEEH
T ss_conf 776505789998847888899-823886455554104440574299856
No 134
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=0.00019 Score=51.98 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=76.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECCC-CHHHH-
Q ss_conf 8578708999549875188999999999850398199998646----30478-88875201577510000347-88999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIET-NVEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~-~l~~i- 158 (479)
=+.+|.++-|.|+.|+|||||+.-++.-. +...--+|+.+++ +..+. ..| .+++....+..++... -.+++
T Consensus 22 ~i~~Ge~~~iiG~SGsGKSTll~~i~gL~-~p~~G~I~~~g~~i~~~~~~~~~~~r-~~ig~vfQ~~~Lf~~lTv~eNv~ 99 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLL-RPDSGEVLIDGEDISGLSEAELYRLR-RRMGMLFQSGALFDSLTVFENVA 99 (235)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEEEECCEECCCCCHHHHHHHH-CCEEEEECCCCCCCCCCHHHHHH
T ss_conf 88799899999999972999999997599-98985899999999989988999975-78299704986589996999999
Q ss_pred -----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf -----------------------------------------------999973169828997216876654204455636
Q gi|254780334|r 159 -----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 159 -----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
++.+ --.+|++++.|-.-+ .+|.
T Consensus 100 ~~l~~~~~~~~~~~~~r~~~~L~~vgL~~~~~~~p~~LSGGq~QRvaIARA-Lv~~P~illlDEPts----~LDp----- 169 (235)
T cd03261 100 FPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA-LALDPELLLYDEPTA----GLDP----- 169 (235)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCC----CCCH-----
T ss_conf 999995799999999999999986799257647841069999999999999-854899899808866----4798-----
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 79999999999975307978999863036654331145787753027851
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.-..++...+.++.++.++++++|-|- .....++.|-+..+.
T Consensus 170 ~~~~~i~~li~~l~~~~g~T~i~vTHd--------~~~a~~~~Dri~vm~ 211 (235)
T cd03261 170 IASGVIDDLIRSLKKELGLTSIMVTHD--------LDTAFAIADRIAVLY 211 (235)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 999999999999999729999998989--------899999699899998
No 135
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=0.00022 Score=51.46 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=76.8
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---CCCEEEEECCCCHHHHHHHHHH-CC-CCCCCHHEECCC
Q ss_conf 888865985787089995498751889999999998503---9819999864630478888752-01-577510000347
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK---KHRITYVSGEEAIGQIRLRAQR-LN-TINSSVYIAIET 153 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~---g~~vlYvS~EEs~~Qi~~Ra~R-l~-~~~~~i~~~~e~ 153 (479)
||. +..-+.+|.++.|.|+.|+|||||+-.++..+... .+.+.| .+.+. .....+..+ +. ...++.+ +...
T Consensus 23 L~~-is~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~-~g~~~-~~~~~~~~~~~~~v~q~~~~-~~~l 98 (202)
T cd03233 23 LKD-FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY-NGIPY-KEFAEKYPGEIIYVSEEDVH-FPTL 98 (202)
T ss_pred EEC-EEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEE-CCEEC-CHHHHHHHCCEEEECCCCCC-CCCC
T ss_conf 977-08898098499999899998899999983787898751379999-99994-05148642019998673223-7688
Q ss_pred CHHHH-------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 88999-------------------------99997316982899721687665420445563679999999999975307
Q gi|254780334|r 154 NVEDI-------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKN 208 (479)
Q Consensus 154 ~l~~i-------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~ 208 (479)
.+.+. ++..+ -.+|++++.|=.. ..+|. .-.+++...|..++++.
T Consensus 99 tv~e~l~~~~~~~~~~~~~~LSgGqkqRv~iA~aL-~~~P~illlDEPt----~gLD~-----~~~~~i~~~l~~l~~~~ 168 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISGGERKRVSIAEAL-VSRASVLCWDNST----RGLDS-----STALEILKCIRTMADVL 168 (202)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCC----CCCCH-----HHHHHHHHHHHHHHHHC
T ss_conf 09999999998465874445899999999999999-5299889983876----56899-----99999999999999877
Q ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 978999863036654331145787753027851
Q gi|254780334|r 209 GVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 209 ~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+.+++++-|-.- ..++++.|-++.++
T Consensus 169 ~~t~ii~~~~~~-------~~~~~~~Dri~vl~ 194 (202)
T cd03233 169 KTTTFVSLYQAS-------DEIYDLFDKVLVLY 194 (202)
T ss_pred CCEEEEEEECCH-------HHHHHHCCEEEEEE
T ss_conf 998999990698-------99999699999995
No 136
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.91 E-value=0.00034 Score=50.16 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=77.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH-HHHHHHH
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003478899-9999973
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED-IIATLIT 164 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~-il~~~i~ 164 (479)
-+.+|.++-+.|+-|+|||||+--++.-.....+. +++.+++-...-...+.|.++.. ++-++--.-.- .+...+
T Consensus 22 ~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G~-i~i~G~~i~~~~~~~~~~~gi~~--v~qLSgG~~Qrv~iaral- 97 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASPRDARRAGIAM--VYQLSVGERQMVEIARAL- 97 (163)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCCCCE--ECCCCHHHHHHHHHHHHH-
T ss_conf 98799899999889989999999995776898578-99999999999999999879948--946998999999999999-
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..+|++++.|=.. ..+| +...++....+.++ ++.+.+++++-|- ...++.+.|.++.+.
T Consensus 98 ~~~p~llilDEPt----~gLD-----~~~~~~i~~~l~~l-~~~G~til~vtH~--------l~~~~~~~Drv~vl~ 156 (163)
T cd03216 98 ARNARLLILDEPT----AALT-----PAEVERLFKVIRRL-RAQGVAVIFISHR--------LDEVFEIADRVTVLR 156 (163)
T ss_pred HHCCCEEEEECCC----CCCC-----HHHHHHHHHHHHHH-HHCCCEEEEEECC--------HHHHHHHCCEEEEEC
T ss_conf 7299999990975----5799-----99999999999999-8789899999384--------999998699999990
No 137
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=0.00044 Score=49.35 Aligned_cols=137 Identities=17% Similarity=0.288 Sum_probs=77.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHHHHHCCCCCCCHHEECC-CCHHHH--
Q ss_conf 85787089995498751889999999998503981999986463----04788887520157751000034-788999--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA----IGQIRLRAQRLNTINSSVYIAIE-TNVEDI-- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs----~~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~i-- 158 (479)
-+.+|.++-|.|+.|+|||||+--++. +-+...--+|+.+++- ..+++....+++....+..++.. +-.+++
T Consensus 23 ~i~~Ge~~~iiGpsGsGKSTLl~~i~g-l~~p~~G~I~~~g~~i~~~~~~~l~~~R~~ig~vfQ~~~l~~~ltV~enV~~ 101 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNG-LVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS 101 (241)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 999998999999998339999999974-9999855999999998989989999986491898079978998899999863
Q ss_pred -----------------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHC
Q ss_conf -----------------------------------------------------999973169828997216876654204
Q gi|254780334|r 159 -----------------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAE 185 (479)
Q Consensus 159 -----------------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~ 185 (479)
++.++ -.+|++++.|=.. +.+|
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~~~~LSGGq~QRVaIARAL-~~~P~ill~DEPt----s~LD 176 (241)
T cd03256 102 GRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL-MQQPKLILADEPV----ASLD 176 (241)
T ss_pred HHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC
T ss_conf 6541330557761799599999999999976997787678441480289999999998-5599989962876----6589
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 45563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 186 SSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 186 s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+...+++...|.++++++++++++|-| .+.....+.|-++.+.
T Consensus 177 -----~~~~~~i~~ll~~l~~~~g~Tii~vtH--------dl~~a~~~adri~~l~ 219 (241)
T cd03256 177 -----PASSRQVMDLLKRINREEGITVIVSLH--------QVDLAREYADRIVGLK 219 (241)
T ss_pred -----HHHHHHHHHHHHHHHHHCCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf -----999999999999999851989999957--------9899999699899996
No 138
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=97.90 E-value=0.001 Score=46.68 Aligned_cols=168 Identities=19% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCC
Q ss_conf 6663237812488886598578708999549875188999999999850398199998646304788887520---1577
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTIN 144 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~ 144 (479)
..+-+.|||.-+|-++ =+.+|+=++|.|.+|+|||+|+++...+....+..++|..--|....+..-.+.+ +...
T Consensus 49 i~e~l~TGI~aID~l~--pig~GQr~~If~~~g~GKt~l~~~~i~~~~~~~~~~V~~~IGer~rEv~ef~~~~~~~~~l~ 126 (274)
T cd01132 49 VNEPLQTGIKAIDAMI--PIGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAME 126 (274)
T ss_pred CCCCCCCCCEEEECCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 7861103834541346--62478675155888755788999999974136965999973245226999999876057620
Q ss_pred CCHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHHH------------HHHCCCCCCHHHHHHHHHH
Q ss_conf 5100003478---89---------9999997316982899721687665------------4204455636799999999
Q gi|254780334|r 145 SSVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLWS------------QTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 145 ~~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~~------------~~~~s~~GsvsQvre~~~~ 200 (479)
..+.+.+..+ .. .+-+...++.+--++++||+..... +.-.+.|+++... ..+
T Consensus 127 ~tv~v~~t~~~p~~~r~~a~~~a~~iAEyfrd~Gk~VLll~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~---~~~ 203 (274)
T cd01132 127 YTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL---HSR 203 (274)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHH
T ss_conf 11477404778758777654412226789987799479999788999999999999727999777779627877---689
Q ss_pred HHHHHH----H---CCCEEEEEEEECCCCCCCCHHHH--HHHHHEEEEEE
Q ss_conf 999753----0---79789998630366543311457--87753027851
Q gi|254780334|r 201 MIQYAK----K---NGVAMVLVGHVTKEGQIAGPRVI--EHMVDAVLYFE 241 (479)
Q Consensus 201 L~~~AK----~---~~i~vilighvTK~G~iAGp~~L--eH~VD~vl~~e 241 (479)
|..-|- . --+|.|-+-. +..+.+..|-.- -.+.|..++|.
T Consensus 204 l~ERag~~~~~~~~GSiT~~~~v~-~~~dD~t~pi~d~~~~i~dg~ivLs 252 (274)
T cd01132 204 LLERAAKLNDELGGGSLTALPIIE-TQAGDVSAYIPTNVISITDGQIFLE 252 (274)
T ss_pred HHHHHHCCCCCCCCEEEEEEEEEE-CCCCCCCCCHHHHHHHHCCEEEEEC
T ss_conf 998632156999881421778997-3587778851666722204599997
No 139
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=97.90 E-value=0.00063 Score=48.18 Aligned_cols=136 Identities=17% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHH-CCCCCCCHHEE-------------
Q ss_conf 85787089995498751889999999998503981999986463-0478888752-01577510000-------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQR-LNTINSSVYIA------------- 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~R-l~~~~~~i~~~------------- 150 (479)
-+.+|.++-|.|+-|+|||||+--++.-.....+. +++.+++- ......|+.+ ++....+..++
T Consensus 25 ~i~~Gei~~liGpNGaGKSTLl~~i~Gl~~~~~G~-I~i~g~~i~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~enl~~~~ 103 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGN-IIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVL 103 (241)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 98399799998899986999999996788888762-77634523448988998577699624354577888999999999
Q ss_pred -------------------CCCCHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf -------------------3478899-----------------9999973169828997216876654204455636799
Q gi|254780334|r 151 -------------------IETNVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 151 -------------------~e~~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
...++++ .++..+ -.+|++++.|=.. ..+| |. ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~iAraL-~~~P~illLDEPt----~gLD--~~---~~ 173 (241)
T PRK10895 104 QIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL-AANPKFILLDEPF----AGVD--PI---SV 173 (241)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCC--HH---HH
T ss_conf 9844899899999999999977991464110666898889999999999-6699889995875----4799--99---99
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999999975307978999863036654331145787753027851
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+++ ..+.+..++.+++++++-|- ...++++.|.|+.+.
T Consensus 174 ~~i-~~~l~~l~~~g~tvl~~tHd--------l~~~~~~~drv~vl~ 211 (241)
T PRK10895 174 IDI-KRIIEHLRDSGLGVLITDHN--------VRETLAVCERAYIVS 211 (241)
T ss_pred HHH-HHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 999-99999999649999999072--------999999799999998
No 140
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.89 E-value=0.00037 Score=49.89 Aligned_cols=137 Identities=22% Similarity=0.301 Sum_probs=76.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHHHHHCCCCCCCHHEECCC--------
Q ss_conf 85787089995498751889999999998503981999986463----047888875201577510000347--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA----IGQIRLRAQRLNTINSSVYIAIET-------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs----~~Qi~~Ra~Rl~~~~~~i~~~~e~-------- 153 (479)
-+.+|.++-|.|+-|+|||||+--++.-+.-..+.+ ++.+++- ..++.....+++....+..++...
T Consensus 30 ~i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~p~~G~I-~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~l~~~ltv~eni~~ 108 (269)
T PRK11831 30 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI-LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY 108 (269)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHHHCEEEECCCCCCCCCCCHHHHHHH
T ss_conf 887998999993999759999999967988898669-9999888765887899876146898537632678859999989
Q ss_pred ------------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ------------------------88999-----------------9999731698289972168766542044556367
Q gi|254780334|r 154 ------------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 154 ------------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
.+++. ++..+ -.+|++++.|=.- ..+| ..
T Consensus 109 ~l~~~~~~~~~~~~~~v~~~Le~~gL~~~~~~~~~~LSGGq~QRv~iAraL-~~~P~iLlLDEPt----sgLD-----~~ 178 (269)
T PRK11831 109 PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI-ALEPDLIMFDEPF----VGQD-----PI 178 (269)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC-----HH
T ss_conf 999955899999999999999861765456388231899999999999999-7599999982875----6799-----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-.++....+.++.++.++++++|-|- -..+..+.|.|+.+.
T Consensus 179 ~~~~i~~li~~l~~~~g~TiiivtHd--------l~~v~~iaDrv~vl~ 219 (269)
T PRK11831 179 TMGVLVKLISELNSALGVTCVVVSHD--------VPEVLSIADHAWIVA 219 (269)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 99999999999998529899998649--------899998699999998
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.89 E-value=0.0002 Score=51.90 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347889999999731
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
|+.|-.=+|+.|+||+|||.|+-.+|... +-..+.+++.+=.+.. +| -++..+.++... .++
T Consensus 162 Gi~pPkGvLLyGPPGtGKTllAkAvA~e~---~~~fi~v~~s~l~sk~------vG--------esek~vr~lF~~-Ar~ 223 (390)
T PRK03992 162 GIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVQKF------IG--------EGARLVRELFEL-ARE 223 (390)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHHHHCC------CC--------HHHHHHHHHHHH-HHH
T ss_conf 99999727868989997899999999874---8887996679975245------41--------799999999999-997
Q ss_pred CCCCEEEECHHHHHHHHHHCC
Q ss_conf 698289972168766542044
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAES 186 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s 186 (479)
..|.+++||-|-++.....++
T Consensus 224 ~aP~IiFiDEiDai~~~R~~~ 244 (390)
T PRK03992 224 KAPSIIFIDEIDAIAAKRTDS 244 (390)
T ss_pred HCCCEEEHHHHHHHHCCCCCC
T ss_conf 099089714325663356778
No 142
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.88 E-value=0.00045 Score=49.29 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=71.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCC---CHH-HHHHHHHH------------------
Q ss_conf 85787089995498751889999999998503----98199998646---304-78888752------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----KHRITYVSGEE---AIG-QIRLRAQR------------------ 139 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----g~~vlYvS~EE---s~~-Qi~~Ra~R------------------ 139 (479)
-+.+|.+.-|.|+.|+||||+++-+..-+... ++.++|-..+- +.. .-+.|..+
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHCCCHHHHHHHCCCCEEEEECCCHHHCCCHHHH
T ss_conf 86489589998689888899999985548887864441899878023217877898741640899966863554963139
Q ss_pred -----------------------------CCCCCCCHHEECCCCHH------HHHHHHHHCCCCCEEEECHHHHHHHHHH
Q ss_conf -----------------------------01577510000347889------9999997316982899721687665420
Q gi|254780334|r 140 -----------------------------LNTINSSVYIAIETNVE------DIIATLITNEKPDLVIIDSIQTLWSQTA 184 (479)
Q Consensus 140 -----------------------------l~~~~~~i~~~~e~~l~------~il~~~i~~~~~~~vVIDSIQtl~~~~~ 184 (479)
.++......-.....+. .+++..+ ..+|+++|.|=-.|......
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmAL-a~~P~LLIaDEPTTaLDvt~ 189 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL-ALKPKLLIADEPTTALDVTT 189 (539)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCHHH
T ss_conf 99999999973565599999999999997299982554248722670499999999998-37999899779854108999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 445563679999999999975307978999863
Q gi|254780334|r 185 ESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 185 ~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
-.++...|.++.++.|+++++|-|
T Consensus 190 ---------q~qIL~llk~l~~e~g~a~l~ITH 213 (539)
T COG1123 190 ---------QAQILDLLKDLQRELGMAVLFITH 213 (539)
T ss_pred ---------HHHHHHHHHHHHHHCCCEEEEECC
T ss_conf ---------999999999999970948999868
No 143
>KOG3949 consensus
Probab=97.88 E-value=6.2e-05 Score=55.56 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 6663237812488886598578708999549875-1889999999998503981999986
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGI-GKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGv-GKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
...-.+||++.||.+||||++-|+++||--++-. =-|.|+--|+++...+++..+|.|.
T Consensus 25 ~q~~tSSG~~~lD~iLGgGLp~gs~vLIeEd~~~~~~s~LlK~FlAEGlv~~~~~~~as~ 84 (360)
T KOG3949 25 GQLITSSGIADLDQILGGGLPLGSSVLIEEDRSMIYHSVLLKYFLAEGLVNNHTLLLASP 84 (360)
T ss_pred CCEEECCCCHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 755753686347888507744675799950566406999999999723005856774066
No 144
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.88 E-value=0.00019 Score=51.95 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=68.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE--CC---CCHHHHHHHHHHCCCCCC----CHHEEC--CCC
Q ss_conf 8578708999549875188999999999850398199998--64---630478888752015775----100003--478
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVS--GE---EAIGQIRLRAQRLNTINS----SVYIAI--ETN 154 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS--~E---Es~~Qi~~Ra~Rl~~~~~----~i~~~~--e~~ 154 (479)
-+.+|.++.|.|+-|+|||||+..+......... ..+.. .. -...|++.. ..+++... .+.-++ +..
T Consensus 17 ~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-~~~~l~~~~l~~~~~~LSGGqkQ 94 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARL-ISFLPKFSRNKLIFIDQLQFL-IDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHHCCHH-HCCHHHCCCCCEEEHHHHHHH-HHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 8889989999999999899999988876103112-032101375536885779999-97488667789916868999999
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 89999999731698289972168766542044556367999999999997530797899986303665433114578775
Q gi|254780334|r 155 VEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMV 234 (479)
Q Consensus 155 l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~V 234 (479)
--.+...+..+.+|++++.|=..+ .+| ....++....|.++ ++.+.++++|-|- +..+++ .
T Consensus 95 RvaiAraL~~~p~~~ililDEPts----gLD-----~~~~~~l~~~l~~l-~~~g~TvI~vtHd--------~~~~~~-a 155 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPST----GLH-----QQDINQLLEVIKGL-IDLGNTVILIEHN--------LDVLSS-A 155 (176)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCC----CCC-----HHHHHHHHHHHHHH-HHCCCEEEEEECC--------HHHHHH-C
T ss_conf 999999998689986899717744----589-----87999999999999-9879989999478--------799983-9
Q ss_pred HEEEEEE
Q ss_conf 3027851
Q gi|254780334|r 235 DAVLYFE 241 (479)
Q Consensus 235 D~vl~~e 241 (479)
|-++.++
T Consensus 156 Drii~l~ 162 (176)
T cd03238 156 DWIIDFG 162 (176)
T ss_pred CEEEEEC
T ss_conf 9999945
No 145
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=0.00041 Score=49.53 Aligned_cols=136 Identities=19% Similarity=0.340 Sum_probs=77.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECCCC-HHHH-
Q ss_conf 8578708999549875188999999999850398199998646----30478-888752015775100003478-8999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIETN-VEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~~-l~~i- 158 (479)
-+.+|.++-|.|+.|+|||||+--++.-..-..+.+ ++.+.+ +..+. ..| .+++....+..++.... .+++
T Consensus 27 ~i~~Ge~~~ivG~SGsGKSTllr~i~gL~~p~sG~I-~~~g~~i~~~~~~~~~~~R-r~ig~VFQ~~~L~~~~tv~~nv~ 104 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV-LVDGTDLTLLSGKELRKAR-RRIGMIFQHFNLLSSRTVFENVA 104 (233)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHH-CCCCEEECCCCCCCCCCHHHHHH
T ss_conf 999999999988980589999999967999998089-9999998979999999986-25877943778899883999999
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
++.++ -.+|++++-|=..+. +| +.
T Consensus 105 ~~l~~~~~~~~~~~~r~~~lL~~vgL~~~~~~yP~eLSGGq~QRVaIARAL-~~~P~lllaDEPTs~----LD-----~~ 174 (233)
T cd03258 105 LPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL-ANNPKVLLCDEATSA----LD-----PE 174 (233)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCCCC----CC-----HH
T ss_conf 999974999999999999999867991676269652677888999999998-339989996597664----69-----88
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
--.++...|.++.++.++++++|-| ......++.|-|+.+.
T Consensus 175 ~~~~il~ll~~l~~e~g~t~i~vTH--------Dl~~~~~~adrv~vm~ 215 (233)
T cd03258 175 TTQSILALLRDINRELGLTIVLITH--------EMEVVKRICDRVAVME 215 (233)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 9999999999999972989999898--------9999998699799997
No 146
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.87 E-value=0.0003 Score=50.59 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=86.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC--------CCHHHHHHHHHHCCCCCCCHHE----ECCC
Q ss_conf 857870899954987518899999999985039819999864--------6304788887520157751000----0347
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE--------EAIGQIRLRAQRLNTINSSVYI----AIET 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E--------Es~~Qi~~Ra~Rl~~~~~~i~~----~~e~ 153 (479)
-+.+|...=|.|+.|+|||||+--++.-..-..+. +|+.+. |..+++..-.++.+...+...- ++-.
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCE-EEECCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCH
T ss_conf 97589878999368887787999997283888726-99868531113666799999999998098877863388303731
Q ss_pred CHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHH
Q ss_conf 88999999973169828997216876654204455636799999999999753079789998630366543311457877
Q gi|254780334|r 154 NVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHM 233 (479)
Q Consensus 154 ~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~ 233 (479)
..+.+.-.-.-..+|+++|-|=...+....+ | ..+.+-|.++-++.+++.++|.|. -.++.|+
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSi--------q-aqIlnLL~~lq~~~~lt~lFIsHD--------l~vv~~i 176 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSV--------Q-AQILNLLKDLQEELGLTYLFISHD--------LSVVRYI 176 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCHHHCCHHH--------H-HHHHHHHHHHHHHHCCEEEEEEEE--------HHHHHHH
T ss_conf 3356999999850986797437211012467--------9-999999999999859758999877--------7766640
Q ss_pred HHEEEEE
Q ss_conf 5302785
Q gi|254780334|r 234 VDAVLYF 240 (479)
Q Consensus 234 VD~vl~~ 240 (479)
.|-+..+
T Consensus 177 sdri~Vm 183 (268)
T COG4608 177 SDRIAVM 183 (268)
T ss_pred CCCEEEE
T ss_conf 4447887
No 147
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.87 E-value=0.00049 Score=49.00 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH-C-CCCCEEEEECCCCHHH-HHHHHHH-CCCCCCCHHEECCCCHHHHH--
Q ss_conf 857870899954987518899999999985-0-3981999986463047-8888752-01577510000347889999--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLA-Y-KKHRITYVSGEEAIGQ-IRLRAQR-LNTINSSVYIAIETNVEDII-- 159 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~-~g~~vlYvS~EEs~~Q-i~~Ra~R-l~~~~~~i~~~~e~~l~~il-- 159 (479)
=+.+|.++-|.|+-|+|||||+--++.... + ..+. +|+.+++-... ...|+.+ ++........+....+++.+
T Consensus 22 ~v~~Gei~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~-I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE-ILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCE-EEECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHH
T ss_conf 8879989999968999999999997077777852007-999999988699999997694896367687079849999976
Q ss_pred ---------------HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf ---------------99973169828997216876654204455636799999999999753079789998630366543
Q gi|254780334|r 160 ---------------ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQI 224 (479)
Q Consensus 160 ---------------~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~i 224 (479)
+.. --.+|++++.|=-. +.+| +...+.....+.++++ .+++++++-|-
T Consensus 101 ~~~~LSGGekqrv~iara-l~~~P~lllLDEPt----sgLD-----~~~~~~i~~~i~~l~~-~g~tiiiitH~------ 163 (200)
T cd03217 101 VNEGFSGGEKKRNEILQL-LLLEPDLAILDEPD----SGLD-----IDALRLVAEVINKLRE-EGKSVLIITHY------ 163 (200)
T ss_pred HCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCC----CCCC-----HHHHHHHHHHHHHHHH-CCCEEEEEEEC------
T ss_conf 463679999999999999-96099999996962----2699-----9999999999999985-79999999963------
Q ss_pred CCHHHHHHH-HHEEEEEE
Q ss_conf 311457877-53027851
Q gi|254780334|r 225 AGPRVIEHM-VDAVLYFE 241 (479)
Q Consensus 225 AGp~~LeH~-VD~vl~~e 241 (479)
+..++.+ .|.|+.++
T Consensus 164 --~~~~~~~~~Drv~vl~ 179 (200)
T cd03217 164 --QRLLDYIKPDRVHVLY 179 (200)
T ss_pred --HHHHHHHCCCEEEEEE
T ss_conf --6877664699999987
No 148
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.87 E-value=0.00049 Score=48.99 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=60.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHC-CC-CCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHH
Q ss_conf 78708999549875188999999999850-39-8199998646----304788887520157751000034788999999
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAY-KK-HRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIAT 161 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-~g-~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~ 161 (479)
..|.++.+.||+|+||||-...+|+...- .| .+|..||..- ..+|++.+++-|+++-.-. ....++...+.
T Consensus 174 ~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv--~~~~eL~~aL~- 250 (404)
T PRK06995 174 ERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAV--KDAADLRLALA- 250 (404)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHH-
T ss_conf 147558986688876375899999999998389837999768754789999999998759559995--99999999999-
Q ss_pred HHHCCCCCEEEECHH
Q ss_conf 973169828997216
Q gi|254780334|r 162 LITNEKPDLVIIDSI 176 (479)
Q Consensus 162 ~i~~~~~~~vVIDSI 176 (479)
+-...++|.||..
T Consensus 251 --~l~~~dlILIDTa 263 (404)
T PRK06995 251 --ELRNKHIVLIDTV 263 (404)
T ss_pred --HHCCCCEEEEECC
T ss_conf --7089999998099
No 149
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=0.00022 Score=51.54 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=77.2
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHCCCCCCC--HHEECCC--------
Q ss_conf 9857870899954987518899999999985039819999864630-4788887520157751--0000347--------
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-GQIRLRAQRLNTINSS--VYIAIET-------- 153 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-~Qi~~Ra~Rl~~~~~~--i~~~~e~-------- 153 (479)
=-+.+|.++-|.|+-|+|||||+-.++.-+.-..+. +++.+++-. ...+....+++....+ ..++..+
T Consensus 25 ~~i~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G~-I~i~G~~i~~~~~~~~r~~ig~vfQ~p~~~l~~~tv~~~i~~~ 103 (277)
T PRK13652 25 FIAGRKQRIAVIGPNGAGKSTLFKHFNGILKPTSGS-VLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG 103 (277)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHCCEEEEECCCHHHCCCHHHHHHHHH
T ss_conf 799899899999999947999999996699998469-9999999998999999713289987762221325599999988
Q ss_pred ----------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf ----------------------88999-----------------999973169828997216876654204455636799
Q gi|254780334|r 154 ----------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 154 ----------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
++++. ++.. --.+|++++.|=..+- +| ..-.
T Consensus 104 ~~~~g~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSGGqkqRvaiA~a-L~~~P~lLlLDEPtag----LD-----p~~~ 173 (277)
T PRK13652 104 PINLGLDEETVAHRVDEALHMLGLEELRDRVPHHLSGGEKKRVAIAGI-LAMEPQVLVLDEPTAG----LD-----PQGV 173 (277)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH-HHHCCCEEEECCCCCC----CC-----HHHH
T ss_conf 988698999999999999986799788718954489999999999999-9829999998397454----89-----9999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999999975307978999863036654331145787753027851
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+++...|.++.++.+++++++-|. -..+..+.|.++.++
T Consensus 174 ~~i~~~l~~l~~~~g~Tii~vtHd--------l~~v~~~aDri~vl~ 212 (277)
T PRK13652 174 KELFDFLNALPETYGMTVIFSTHQ--------VELVAEMADYIYVME 212 (277)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 999999999998509899999148--------999999799999998
No 150
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.84 E-value=0.00037 Score=49.85 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=70.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHCCCCCCCHHE-----------ECCC
Q ss_conf 8578708999549875188999999999850398199998646304-788887520157751000-----------0347
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRAQRLNTINSSVYI-----------AIET 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra~Rl~~~~~~i~~-----------~~e~ 153 (479)
-+.+|..+-|.|+.|+|||||+.-++.-..-..+ .+++.+++-.. .......+++....+.++ ..+.
T Consensus 30 ~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p~~G-~I~idg~di~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Nl~~~~~~ 108 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY 108 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC-EEEECCEECCCCCHHHHHHHCEEEECCCEECCCCHHHHCCCCCCC
T ss_conf 9869999999999998799999999987288887-899999995407999999515377035633275499873803335
Q ss_pred CHHHH----------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 88999----------------------99997316982899721687665420445563679999999999975307978
Q gi|254780334|r 154 NVEDI----------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVA 211 (479)
Q Consensus 154 ~l~~i----------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~ 211 (479)
+-+++ ++..+ -.+|+++++|-.. +.+|. .+- +.....+..++ .+.+
T Consensus 109 ~~~~i~~~l~~~~~g~~LSgGqkQrl~iARal-~~~p~ililDEpt----s~LD~--~~~---~~i~~~i~~~~--~~~T 176 (207)
T cd03369 109 SDEEIYGALRVSEGGLNLSQGQRQLLCLARAL-LKRPRVLVLDEAT----ASIDY--ATD---ALIQKTIREEF--TNST 176 (207)
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCCH--HHH---HHHHHHHHHHC--CCCE
T ss_conf 89999999860478888698999999999999-7089999981634----44898--999---99999999975--9999
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999863036654331145787753027851
Q gi|254780334|r 212 MVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 212 vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+++|-|- ...+.+ .|-|+.++
T Consensus 177 vi~itH~--------l~~~~~-~D~Iivl~ 197 (207)
T cd03369 177 ILTIAHR--------LRTIID-YDKILVMD 197 (207)
T ss_pred EEEEECC--------HHHHHH-CCEEEEEE
T ss_conf 9999079--------999985-99999998
No 151
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=0.00093 Score=46.94 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=68.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-------CHHHHHHHHHHCCCCCCCHHEECC-C----
Q ss_conf 8578708999549875188999999999850398199998646-------304788887520157751000034-7----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-------AIGQIRLRAQRLNTINSSVYIAIE-T---- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-------s~~Qi~~Ra~Rl~~~~~~i~~~~e-~---- 153 (479)
-+.+|.++-|.|+.|+|||||+- +...+.+...--+++.++. ....++....+++....+..++.. +
T Consensus 24 ~i~~Ge~~~iiG~nGaGKSTLl~-~l~gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~lr~~ig~VfQ~~~l~~~~tv~en 102 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLR-VLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRQNVGMVFQQYNLWPHLTVQQN 102 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHH-HHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHH
T ss_conf 88799899999999971999999-99658888860899999996346788877999975580899307866878668788
Q ss_pred ---------------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf ---------------------------88999-----------------9999731698289972168766542044556
Q gi|254780334|r 154 ---------------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 154 ---------------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
++++. ++.. --.+|++++.|--. ..+| |.
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAra-L~~~P~iLllDEPT----s~LD--~~ 175 (242)
T PRK11124 103 LIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA-LMMEPQVLLFDEPT----AALD--PE 175 (242)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHH-HCCCCCEEEECCCC----CCCC--HH
T ss_conf 88899998499878999999999987697777638732279999899998764-33799799976886----5489--99
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 3679999999999975307978999863036654331145787753027851
Q gi|254780334|r 190 TVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 190 svsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+..++ ...|..+ ++.++++++|-|- ...+.++.|.++.++
T Consensus 176 ~~~~i---~~ll~~l-~~~g~tii~vtHd--------l~~~~~~adri~vl~ 215 (242)
T PRK11124 176 ITAQI---VSIIREL-AETGITQVIVTHE--------VEVARKTASRVVYME 215 (242)
T ss_pred HHHHH---HHHHHHH-HHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 99999---9999999-8429989998889--------999999699999997
No 152
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.83 E-value=0.00027 Score=50.93 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
=+.+|..+-|.|+.|+|||||+.-++.-..-..+ .+++.+.
T Consensus 36 ~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G-~I~idg~ 76 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG-QVLLDGK 76 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCE
T ss_conf 9829999999999998499999999645467887-8999999
No 153
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=0.00013 Score=53.12 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=73.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHCCCCCCC--HHEECCCCHHH-----
Q ss_conf 8578708999549875188999999999850398199998646-304788887520157751--00003478899-----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-AIGQIRLRAQRLNTINSS--VYIAIETNVED----- 157 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-s~~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~----- 157 (479)
=+.+|..+-|.|+.|+|||||+.-++.-+....+. +++.++. +......+..+++....+ ..+...+-.++
T Consensus 29 ~i~~Ge~~aiiG~sGsGKSTL~~~l~Gl~~~~~G~-I~~~G~~i~~~~~~~~r~~ig~VfQ~p~~~l~~~tV~e~i~~g~ 107 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGI-VKIDGERLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM 107 (277)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 98899899999999968999999996389988848-99999999857888885176899989763257550888898777
Q ss_pred ---------H---------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf ---------9---------------------------------9999731698289972168766542044556367999
Q gi|254780334|r 158 ---------I---------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 158 ---------i---------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
+ ++. +-..+|++++.|=..+. +| ...-+
T Consensus 108 ~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~P~~LSGGqrQRvaIA~-aLa~~P~ililDEPTs~----LD-----~~~~~ 177 (277)
T PRK13642 108 ENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAG-IIALRPEIIILDESTSM----LD-----PTGRS 177 (277)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCCCC----CC-----HHHHH
T ss_conf 6669999999999999998779965655791228999999999999-99669999999588765----89-----89999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
++...|..+.++.++++++|-|- .....+ .|-++.+.
T Consensus 178 ~i~~ll~~L~~~~~~Tii~iTHd--------l~~~~~-aDrv~vm~ 214 (277)
T PRK13642 178 EIMRVIHEIKDKYHLTVLSITHD--------LDEAAS-SDRILVMR 214 (277)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEC--------HHHHHH-CCEEEEEE
T ss_conf 99999999998169899999458--------899971-99899998
No 154
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=97.82 E-value=0.00074 Score=47.67 Aligned_cols=169 Identities=16% Similarity=0.231 Sum_probs=102.7
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCCC
Q ss_conf 63237812488886598578708999549875188999999999850398199998646304788887520---157751
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINSS 146 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~~ 146 (479)
+.+.|||.-+|-++ =+.+|+=.+|.|+.|+|||+++++...+-...+-.|+|+.--|-.+.+..-.+.+ +.....
T Consensus 144 epL~TGIkaID~li--PIGrGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~~T 221 (497)
T TIGR03324 144 VPLQTGLKVIDALI--PIGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYT 221 (497)
T ss_pred CCCCCCHHHHHCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCE
T ss_conf 71002414554246--5567746776458888800889999970456671899997325078799999998748752341
Q ss_pred HHEECCCC---H---------HHHHHHHHHCCCCCEEEECHHHHHHH------------HHHCCCCCCHHHHHHHHHHHH
Q ss_conf 00003478---8---------99999997316982899721687665------------420445563679999999999
Q gi|254780334|r 147 VYIAIETN---V---------EDIIATLITNEKPDLVIIDSIQTLWS------------QTAESSPGTVIQVRTSVQAMI 202 (479)
Q Consensus 147 i~~~~e~~---l---------~~il~~~i~~~~~~~vVIDSIQtl~~------------~~~~s~~GsvsQvre~~~~L~ 202 (479)
+.+.+..+ . -.+-+...++.+--++|.||+..... +.-.+.||++.-. ..+|.
T Consensus 222 vVV~Ata~dpa~lr~~Apyaa~aiAEyFrd~G~dVLlv~DdLTr~A~A~REisLll~rpPgreaYPgdvFyl---hsrLL 298 (497)
T TIGR03324 222 IVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYV---HSRLL 298 (497)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHHHH
T ss_conf 799956889989998878999999999996897489999780699999999998648999877889359877---07888
Q ss_pred HHH-HHC------CCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEECCC
Q ss_conf 975-307------9789998630366543311--45787753027851555
Q gi|254780334|r 203 QYA-KKN------GVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFEGGT 244 (479)
Q Consensus 203 ~~A-K~~------~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~ege~ 244 (479)
.-| |-+ .+|.+-|- -|..|.+..| ..+--+.|.-++|+-+-
T Consensus 299 ERA~~l~~~~ggGSiTalpiv-et~~~D~sayIptnvisItDGqI~L~~~L 348 (497)
T TIGR03324 299 ERSTHLNEELGGGSLTALPII-ETEAQNISAYIPTNLISITDGQIYLSPTL 348 (497)
T ss_pred HHCCCCCCCCCCCCEEEEEEE-ECCCCCCCCCHHHHHHHHCCCEEEECCCH
T ss_conf 732477899999772324799-80288656644542220108679972407
No 155
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=0.00089 Score=47.11 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=71.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHCCCCCCCHHE---------------
Q ss_conf 857870899954987518899999999985039819999864630-4788887520157751000---------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-GQIRLRAQRLNTINSSVYI--------------- 149 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-~Qi~~Ra~Rl~~~~~~i~~--------------- 149 (479)
-+.+|.++-|.|+-|+|||||+--++.-.....+. +++.+++-. ...+.++.+++........
T Consensus 24 ~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~sG~-I~i~g~~i~~~~~~~~~~~i~~vpQ~~~~~~~~tv~e~v~~g~~ 102 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT-VFLGDKPISMLSARQLARRLSLLPQHHLTPEGITVRELVSYGRS 102 (255)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHCCCC
T ss_conf 99899799999999981999999997598888648-99999983629989985118997676757899889999970550
Q ss_pred --------------------ECCCCHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf --------------------03478899-----------------99999731698289972168766542044556367
Q gi|254780334|r 150 --------------------AIETNVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 150 --------------------~~e~~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
+...++++ .++..+ -.+|++++.|=-. ..+| +.
T Consensus 103 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRv~iAraL-~~~p~lllLDEPt----sgLD-----~~ 172 (255)
T PRK11231 103 PWLSLWGRLSAEDNARVNQAMNQTRINHLADRRLTELSGGQRQRAFLAMVL-AQDTPVVLLDEPT----TYLD-----IN 172 (255)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCC-----HH
T ss_conf 123441568688999999999882982564797452999999999999999-5399979983886----4489-----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...+....+.++ ++.+.+++++-|- ......+.|.++.+.
T Consensus 173 ~~~~i~~li~~l-~~~g~tvi~vtHd--------l~~~~~~aDriivl~ 212 (255)
T PRK11231 173 HQVELMRLMREL-NTQGKTVVTVLHD--------LNQASRYCDHLVVMA 212 (255)
T ss_pred HHHHHHHHHHHH-HHCCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 999999999999-8689999999378--------899999699999998
No 156
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.82 E-value=0.00024 Score=51.20 Aligned_cols=121 Identities=19% Similarity=0.359 Sum_probs=66.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHH-HHHHHHHCCCCCCCHHEECCCC-HHHH-
Q ss_conf 8578708999549875188999999999850398199998646----3047-8888752015775100003478-8999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQ-IRLRAQRLNTINSSVYIAIETN-VEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Q-i~~Ra~Rl~~~~~~i~~~~e~~-l~~i- 158 (479)
-+.+|.++.|.|+.|+|||||+--+ +.+.+...--+++.+++ +..+ .+.|.+++|....+..++...+ .+++
T Consensus 20 ~i~~Ge~~~i~GpSGsGKSTLL~~i-~gl~~p~sG~i~~~g~~~~~~~~~~~~~~rr~~iG~VfQ~~~L~~~ltV~eNi~ 98 (206)
T TIGR03608 20 TIEKGKMVAIVGESGSGKSTLLNII-GLLEKPDSGQVYLNGQETPPINSKKASKFRREKLGYLFQNFALIENETVEENLD 98 (206)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 9869989999879997099999999-759998975999999999989988999998658899857987679891999999
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
++..+ -.+|++++.|=.. +.+|..
T Consensus 99 l~l~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~p~~LSGGe~QRVAIARAL-~~~P~illaDEPT----~~LD~~----- 168 (206)
T TIGR03608 99 LALKYSKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI-LKPSELILADEPT----GSLDPK----- 168 (206)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCCHH-----
T ss_conf 999865999999999999999986990565299244486999999999998-2499999963998----778999-----
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 99999999999753079789998630
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighv 218 (479)
.-.++...|.+++++ +.+++++-|-
T Consensus 169 ~~~~i~~ll~~l~~~-g~tii~vTHd 193 (206)
T TIGR03608 169 NRDEVLDLLLELNDE-GKTIIIVTHD 193 (206)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEECCC
T ss_conf 999999999999867-9999998987
No 157
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=0.0002 Score=51.83 Aligned_cols=136 Identities=19% Similarity=0.247 Sum_probs=71.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCC--HHEECCC---------
Q ss_conf 85787089995498751889999999998503981999986463-04788887520157751--0000347---------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSS--VYIAIET--------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~--i~~~~e~--------- 153 (479)
-+.+|..+.|.|+.|+|||||+.-++.-+.-..+. +++.|.+- ....+....+++....+ ..++..+
T Consensus 29 ~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~-I~i~G~~i~~~~~~~lr~~ig~VfQ~P~~~l~~~tV~e~iafgl 107 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMVLSEETVWDVRKQIGMVFQNPDNQFVGTTVQDDVAFGL 107 (279)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHEEEEECCHHHHCCCCHHHHHHHHHH
T ss_conf 88799899999999965999999997288888964-99999999857879997436688218565257626899998899
Q ss_pred ---------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf ---------------------88999-----------------9999731698289972168766542044556367999
Q gi|254780334|r 154 ---------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 154 ---------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
++++. ++. .--.+|++++.|=-.+ .+| +..-+
T Consensus 108 ~~~g~~~~e~~~rv~~~l~~~gl~~~~~~~p~~LSGGQrQRvaIAr-aL~~~P~iLilDEPTs----~LD-----~~~~~ 177 (279)
T PRK13635 108 ENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAG-VLALQPDILILDEATS----MLD-----PQGRR 177 (279)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEECCCCC----CCC-----HHHHH
T ss_conf 8779999999999999998779978861793439999999999999-9970999899738745----489-----89999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
++...|.++.++.++++++|-|- ...+.+ .|-|+.++
T Consensus 178 ~i~~~l~~L~~~~g~TvI~itHd--------l~~~~~-aDRiivm~ 214 (279)
T PRK13635 178 EVLETVRQLKEQKGITVLSITHD--------LDEAAQ-ADRVIVMN 214 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEC--------HHHHHC-CCEEEEEE
T ss_conf 99999999998379899999767--------899963-99899998
No 158
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.82 E-value=0.0012 Score=46.28 Aligned_cols=58 Identities=22% Similarity=0.391 Sum_probs=36.3
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 6982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+|++++.|=.. +.+| +...+++...|..++++ +.++++|-| ....+.++.|.++.+.
T Consensus 169 ~~P~lLllDEPt----s~LD-----~~~~~~i~~ll~~l~~~-g~tii~vtH--------dl~~~~~~adri~vl~ 226 (257)
T PRK10619 169 MEPEVLLFDEPT----SALD-----PELVGEVLRIMQQLAEE-GKTMVVVTH--------EMGFARHVSSHVIFLH 226 (257)
T ss_pred CCCCEEEECCCC----CCCC-----HHHHHHHHHHHHHHHHC-CCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 399899976886----6589-----89999999999999975-999999948--------9999998699999998
No 159
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=0.00028 Score=50.74 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH---HHHHHHHHHCCCCCC--CHHEECCCCHHHH--
Q ss_conf 857870899954987518899999999985039819999864630---478888752015775--1000034788999--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI---GQIRLRAQRLNTINS--SVYIAIETNVEDI-- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~---~Qi~~Ra~Rl~~~~~--~i~~~~e~~l~~i-- 158 (479)
-+.+|.++.|.|+.|+|||||+..++.-+.-..+ .+++.+.+-. ..+.....++|.... +..++..+-.+++
T Consensus 29 ~i~~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G-~V~i~G~~i~~~~~~~~~~r~~iG~VfQ~P~~~l~~~tV~e~i~f 107 (287)
T PRK13637 29 EIEDGEFVALIGHTGSGKSTLIQHLNGLLKPTSG-KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAF 107 (287)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEECCCCCCCHHHHHHCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 9879989999999993999999999739988872-699999998788867788874178996175202370309999986
Q ss_pred -----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf -----------------------------------------------999973169828997216876654204455636
Q gi|254780334|r 159 -----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 159 -----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
++. +-..+|++++.|=-.+. +| +
T Consensus 108 g~~~~g~~~~e~~~rv~~~l~~vgL~~~~~~~~~p~~LSGGqkQRvaiA~-aL~~~P~iLllDEPTs~----LD-----p 177 (287)
T PRK13637 108 GPINLGLSEEEIENRVKEAMNIVGLDYEVYKDKSPFELSGGQKRRVAIAG-VVAMEPKVLILDEPTAG----LD-----P 177 (287)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCCCC----CC-----H
T ss_conf 89886999999999999999766998488706891129988999999999-99839999998388664----89-----9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 79999999999975307978999863036654331145787753027851
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..-++....|.++.++.+++++++-|- ...+..+.|-|+.++
T Consensus 178 ~~~~~i~~~l~~L~~e~g~Tvi~vTHd--------l~~v~~~aDRvivl~ 219 (287)
T PRK13637 178 KGRDDILEKIKALHKEYNMTIILVSHS--------MEDVAKIADRIIVMN 219 (287)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 999999999999998509899999579--------999999699999998
No 160
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.81 E-value=0.00043 Score=49.44 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=61.7
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHH
Q ss_conf 98578708999549875188999999999850398199998646304788887520157751000034788999999973
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLIT 164 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~ 164 (479)
-|+.+-.=+|+.|+||+|||.++-.+|... +-+.+.+++-+-.+ ...--+|.++.+++.. .+
T Consensus 254 ~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~---~~p~l~l~~~~l~~--------------~~vGesE~~~r~~f~~-A~ 315 (491)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANEW---NLPLLRLDVGKLFG--------------GIVGESESRMRQMIQL-AE 315 (491)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHHHH--------------HHCCHHHHHHHHHHHH-HH
T ss_conf 599999879997999987899999998663---89469966799756--------------0067049999999999-98
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 169828997216876654204455636799999999999753079789998630366
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE 221 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~ 221 (479)
...|-++.||=|...+...-.+..+..+ +.+...|+.|..++.-+||+++--|..
T Consensus 316 ~~aP~ilfiDEidk~~~~~~~~~d~g~s--~rv~~~~Lt~m~e~~~~VfViattN~~ 370 (491)
T CHL00195 316 TISPCILWIDEIDKAFSGLDSKGDSGTS--NRVLATFITWLSEKKSPVFVVATANNI 370 (491)
T ss_pred HHCCEEEEEEHHHHHCCCCCCCCCCCHH--HHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 6198589974654542588888887232--899999999864689976999958997
No 161
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00046 Score=49.16 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCC-----------
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003478-----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETN----------- 154 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~----------- 154 (479)
-+.+|.++-|.|+.|+|||||+--++.-. +...-.+++.++.-... ...-.+++....+..++...+
T Consensus 21 ~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~-~p~~G~I~~~G~di~~~-~~~~r~ig~vfQ~~~Lfp~~tV~eNi~~~l~~ 98 (235)
T cd03299 21 EVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNL-PPEKRDISYVPQNYALFPHMTVYKNIAYGLKK 98 (235)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECCCC-CHHHCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98899899999999635999999997499-99965999999999999-97678978945798668999099999999987
Q ss_pred --------------------HHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf --------------------899-----------------9999973169828997216876654204455636799999
Q gi|254780334|r 155 --------------------VED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 155 --------------------l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
+++ .++..+ -.+|++++.|=.-+ .+|. .--.+.
T Consensus 99 ~~~~~~e~~~rv~e~l~~~gl~~~~~~~p~~LSGGq~QRVaiARAl-~~~P~llllDEP~s----~LD~-----~~~~~i 168 (235)
T cd03299 99 RKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL-VVNPKILLLDEPFS----ALDV-----RTKEKL 168 (235)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCCC----CCCH-----HHHHHH
T ss_conf 6999999999999999877997787489445899999999999999-73899899928876----4699-----999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...|.++.++.++++++|-|- .....++.|.++.++
T Consensus 169 ~~~l~~l~~~~~~T~i~vTHd--------~~~a~~~aDri~vl~ 204 (235)
T cd03299 169 REELKKIRKEFGVTVLHVTHD--------FEEAWALADKVAIML 204 (235)
T ss_pred HHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 999999999829999998789--------999999699999998
No 162
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00069 Score=47.89 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=80.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC--------------
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003--------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI-------------- 151 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~-------------- 151 (479)
-+.+|+++-+-|+-|+|||||+-.++.-+.-..++ +++.+++-..+...--.+++...+...++.
T Consensus 22 ~v~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~G~-i~i~G~~~~~~~~~~r~~ig~~pq~~~l~~~lTv~e~l~~~~~l 100 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR-ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARL 100 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 98898399999999871999999997697889628-99999998839899982838990787679889999999999998
Q ss_pred -----------------CCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -----------------4788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 152 -----------------ETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 152 -----------------e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
..++.+. +... --.+|++++.|=.. ..+| +...+++
T Consensus 101 ~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ia~A-l~~~P~lliLDEPt----~gLD-----p~~~~~i 170 (220)
T cd03265 101 YGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARS-LVHRPEVLFLDEPT----IGLD-----PQTRAHV 170 (220)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHH-HHCCCCEEEECCCC----CCCC-----HHHHHHH
T ss_conf 199999999999999997799679737043479999999999999-85699989980886----6889-----9999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-..+..+.++.+.+++++-|.-. .+|.++|.++.++
T Consensus 171 ~~~i~~l~~~~g~tiilssH~l~--------eve~l~dri~il~ 206 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYME--------EAEQLCDRVAIID 206 (220)
T ss_pred HHHHHHHHHHCCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf 99999999838979999888889--------9998699999997
No 163
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00029 Score=50.68 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=29.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|+.+.|.|+.|+|||||+--++.-..-..+ .+++.+.
T Consensus 23 ~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~idg~ 63 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG-SILIDGQ 63 (236)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCC-EEEECCE
T ss_conf 9869999999999999899999997438548874-8999999
No 164
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.81 E-value=0.00075 Score=47.65 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=77.8
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH
Q ss_conf 888865985787089995498751889999999998503-9819999864630478888752015775100003478899
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED 157 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~ 157 (479)
|+. +..-+.+|.++.|.|+.|+|||||+--++....-. ..--+++.+... ..... ..+++....+..++....+.+
T Consensus 25 L~~-vs~~v~~Gei~~ilGpnGaGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~-~~~~~-~~~ig~v~Q~~~l~~~ltv~e 101 (194)
T cd03213 25 LKN-VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL-DKRSF-RKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred EEC-CEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCEEC-CHHHH-HHEEEEECCCCCCCCCCCHHH
T ss_conf 888-388990881999998999519999999857777899628999999999-75784-312899846652377684999
Q ss_pred -H------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf -9------------------999973169828997216876654204455636799999999999753079789998630
Q gi|254780334|r 158 -I------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 158 -i------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighv 218 (479)
+ ++.. --.+|++++.|-.. ..+|. ...+++...|.++++ .+.+++++-|-
T Consensus 102 ~l~~~a~l~~LSgGqrqRv~iA~a-L~~~P~illlDEPT----sgLD~-----~~~~~i~~~l~~l~~-~g~tvi~~tH~ 170 (194)
T cd03213 102 TLMFAAKLRGLSGGERKRVSIALE-LVSNPSLLFLDEPT----SGLDS-----SSALQVMSLLRRLAD-TGRTIICSIHQ 170 (194)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCCH-----HHHHHHHHHHHHHHH-CCCEEEEEECC
T ss_conf 999998726988899999999999-96399889994898----78898-----999999999999996-89899999588
Q ss_pred CCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 36654331145787753027851
Q gi|254780334|r 219 TKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 219 TK~G~iAGp~~LeH~VD~vl~~e 241 (479)
- ...++++.|.++.++
T Consensus 171 ~-------~~~~~~~~Drv~vl~ 186 (194)
T cd03213 171 P-------SSEIFELFDKLLLLS 186 (194)
T ss_pred C-------HHHHHHHCCEEEEEE
T ss_conf 8-------599999799999998
No 165
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.80 E-value=0.00049 Score=49.02 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=31.0
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 59857870899954987518899999999985039819999864
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
.==+.+|..+.|.|+.|+|||||+.-++.-..-..+ .+++.+.
T Consensus 41 nl~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G-~I~idg~ 83 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG-KIVIDGI 83 (257)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCE
T ss_conf 899879999999999998199999999605667888-8999989
No 166
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.80 E-value=0.00087 Score=47.18 Aligned_cols=149 Identities=20% Similarity=0.298 Sum_probs=79.7
Q ss_pred CCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHH-HHHHHCCCCCC
Q ss_conf 32378124888865985787089995498751889999999998503981999986463----04788-88752015775
Q gi|254780334|r 71 RIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA----IGQIR-LRAQRLNTINS 145 (479)
Q Consensus 71 Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs----~~Qi~-~Ra~Rl~~~~~ 145 (479)
+++.|..-||.+ .=-+.+|.++.|.|+.|+|||||+--++.-..-..+ .+++.+++- ..++. .| +.+|....
T Consensus 9 ~y~~~~~aL~~v-sl~i~~Ge~v~i~GpSGsGKSTLl~~i~gl~~p~sG-~i~i~g~~~~~~~~~~~~~~R-r~iG~VfQ 85 (214)
T cd03292 9 TYPNGTAALDGI-NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVSDLRGRAIPYLR-RKIGVVFQ 85 (214)
T ss_pred EECCCCEEEEEE-EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHH-CCEEEEEE
T ss_conf 979898998221-779859989999979995399999999629898864-999999998989977899986-67499901
Q ss_pred CHHEECC-CCHHHH-----------------------------------------------HHHHHHCCCCCEEEECHHH
Q ss_conf 1000034-788999-----------------------------------------------9999731698289972168
Q gi|254780334|r 146 SVYIAIE-TNVEDI-----------------------------------------------IATLITNEKPDLVIIDSIQ 177 (479)
Q Consensus 146 ~i~~~~e-~~l~~i-----------------------------------------------l~~~i~~~~~~~vVIDSIQ 177 (479)
+..++.. +-.+++ ++..+ -.+|++++.|=-.
T Consensus 86 ~~~L~~~ltV~eNv~~~l~~~~~~~~~~~~rv~~~L~~vgL~~~~~~~p~~LSGGqkQRvaIARAL-v~~P~ill~DEPT 164 (214)
T cd03292 86 DFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI-VNSPTILIADEPT 164 (214)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC
T ss_conf 876479997999999999984999999999999999877996575499424888999999999999-7299999983987
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 7665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 178 TLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 178 tl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..+|. .+. +++...|..+ ++.+++++++-|- +.....+.|-|+.++
T Consensus 165 ----~~LD~--~~~---~~i~~ll~~l-~~~g~Tii~vTHd--------~~~~~~~~drv~~l~ 210 (214)
T cd03292 165 ----GNLDP--DTT---WEIMNLLKKI-NKAGTTVVVATHA--------KELVDTTRHRVIALE 210 (214)
T ss_pred ----CCCCH--HHH---HHHHHHHHHH-HHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf ----87798--999---9999999999-8509999998989--------899998689799995
No 167
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.80 E-value=0.00086 Score=47.20 Aligned_cols=135 Identities=16% Similarity=0.278 Sum_probs=74.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------ 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------ 153 (479)
-+.+|.++-+.|+-|+|||||+--++.-.....+ .+++.+++...... ...+++...+...++...
T Consensus 22 ~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~G-~i~i~G~~~~~~~~-~~~~ig~~~~~~~l~~~ltv~e~l~~~~~~ 99 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIE-ALRRIGALIEAPGFYPNLTARENLRLLARL 99 (208)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCHH-HHHHEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 8869819999999999999999999578378989-99999999997968-571089994777678988999999999987
Q ss_pred ------CHHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ------88999--------------------------9999731698289972168766542044556367999999999
Q gi|254780334|r 154 ------NVEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 154 ------~l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L 201 (479)
.++.+ +.. .--.+|++++.|=.. ..+| |. ..+++...|
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~-al~~~p~lliLDEPt----~GLD--~~---~~~~i~~~l 169 (208)
T cd03268 100 LGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIAL-ALLGNPDLLILDEPT----NGLD--PD---GIKELRELI 169 (208)
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCC----CCCC--HH---HHHHHHHHH
T ss_conf 4998899999999809950336903569999999999999-985699999993887----6899--99---999999999
Q ss_pred HHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9975307978999863036654331145787753027851
Q gi|254780334|r 202 IQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..+ ++.+.+++++-|.-. .+|.+.|.++.+.
T Consensus 170 ~~l-~~~g~til~~sH~l~--------e~~~~~dri~vl~ 200 (208)
T cd03268 170 LSL-RDQGITVLISSHLLS--------EIQKVADRIGIIN 200 (208)
T ss_pred HHH-HHCCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf 999-958999999898689--------9999699999998
No 168
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.80 E-value=0.00026 Score=50.96 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=70.7
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC--------CEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCH
Q ss_conf 598578708999549875188999999999850398--------199998646304788887520157751000034788
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKH--------RITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNV 155 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~--------~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l 155 (479)
.=-+.+|..+.|.|+.|+|||||+--++.-..-..+ .+.|+.-+.-...-..| +.+-.......--.+..-
T Consensus 21 sl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tl~-e~l~~p~~~~LSGGqkQR 99 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLR-EQLIYPWDDVLSGGEQQR 99 (166)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCHH-HHHHCCCCCCCCHHHHHH
T ss_conf 8898899999999589998899999986987699867997699879998564665887599-996361546789999999
Q ss_pred HHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 99999997316982899721687665420445563679999999999975307978999863036654331145787753
Q gi|254780334|r 156 EDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVD 235 (479)
Q Consensus 156 ~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD 235 (479)
-. ++.++ -.+|++++.|=.. +.+|. +....+.+..++.+.++++|-|- +. +..+.|
T Consensus 100 va-lARal-~~~p~iliLDEpT----s~LD~---------~~~~~l~~~l~~~~~Tvi~VtH~--------~~-~~~~aD 155 (166)
T cd03223 100 LA-FARLL-LHKPKFVFLDEAT----SALDE---------ESEDRLYQLLKELGITVISVGHR--------PS-LWKFHD 155 (166)
T ss_pred HH-HHHHH-HCCCCEEEECCCC----CCCCH---------HHHHHHHHHHHHCCCEEEEEECC--------HH-HHHCCC
T ss_conf 99-99999-6499999975853----32899---------99999999999779989999434--------69-997299
Q ss_pred EEEEEECC
Q ss_conf 02785155
Q gi|254780334|r 236 AVLYFEGG 243 (479)
Q Consensus 236 ~vl~~ege 243 (479)
-|+.+||+
T Consensus 156 rvl~Ldg~ 163 (166)
T cd03223 156 RVLDLDGE 163 (166)
T ss_pred EEEEEECC
T ss_conf 99999189
No 169
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=0.00018 Score=52.14 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=73.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCC--HHEECCCCHHHH----
Q ss_conf 85787089995498751889999999998503981999986463-04788887520157751--000034788999----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSS--VYIAIETNVEDI---- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~i---- 158 (479)
-+.+|..+.|.|+-|+|||||+.-++.-+.-..+. +++.|++- .........+++....+ ..+...+-.+++
T Consensus 26 ~i~~GE~vaivG~nGsGKSTL~~~l~Gll~p~~G~-I~i~G~~i~~~~~~~lr~~ig~VfQ~p~~~~~~~tV~e~i~fgl 104 (276)
T PRK13650 26 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGS-IIIDGDLLTEENVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGL 104 (276)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHCEEEEEECCCHHCCCCCHHHHHHHHH
T ss_conf 99899899999999987999999997388988608-99999999867768876414699767201056363999998799
Q ss_pred -------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -------------------------------------------9999731698289972168766542044556367999
Q gi|254780334|r 159 -------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 159 -------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
++. .-..+|++++.|=-.+. +| ...-+
T Consensus 105 ~~~g~~~~e~~~rv~~~l~~~gl~~~~~r~p~~LSGGQrQRvaIA~-aLa~~P~lLilDEPTs~----LD-----~~~~~ 174 (276)
T PRK13650 105 ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAG-AVAMRPKIIILDEATSM----LD-----PEGRL 174 (276)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCCCC----CC-----HHHHH
T ss_conf 8779999999999999998779924553890338999999999999-99739999998388665----89-----99999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+....|.++.++.++++++|-|--. .+. +.|-|+.+.
T Consensus 175 ~i~~~l~~l~~~~g~Tvi~iTHdl~--------~v~-~aDrvivm~ 211 (276)
T PRK13650 175 ELIKTIKNIRDDYQLTVISITHDLD--------EVA-LSDRVLVMK 211 (276)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECHH--------HHH-CCCEEEEEE
T ss_conf 9999999999842989999957789--------996-099999998
No 170
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=0.0002 Score=51.80 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=75.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEECCCCH-HHHHHHHHHCCCCCCC--HHEECCCCHHH---
Q ss_conf 857870899954987518899999999985039--819999864630-4788887520157751--00003478899---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK--HRITYVSGEEAI-GQIRLRAQRLNTINSS--VYIAIETNVED--- 157 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g--~~vlYvS~EEs~-~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~--- 157 (479)
-+.+|..+.|.|+-|+|||||+..++.-+.-.. ...+++.+.+.. ..+.....+++....+ ..+...+-.++
T Consensus 30 ~I~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~~~~G~i~~~g~~i~~~~~~~lr~~vg~VfQ~P~~q~~~~tV~e~iaf 109 (283)
T PRK13640 30 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPKSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 109 (283)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCHHHHHHCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99899999999999987999999996403788886179999999999679889962618998688761887829999984
Q ss_pred --------------H------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf --------------9------------------------------99997316982899721687665420445563679
Q gi|254780334|r 158 --------------I------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 158 --------------i------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
. ++. +--.+|++++.|=-.+. +| ...
T Consensus 110 gl~n~~~~~~e~~~~v~~~l~~vgl~~~~~~~p~~LSGGqkQRvaiA~-aLa~~P~iLllDEPTs~----LD-----~~~ 179 (283)
T PRK13640 110 GLENRGVPRPEMIKIVADVLSDVGMLDYIDSEPANLSGGQKQRVAIAG-ILAVEPQIIILDESTSM----LD-----PAG 179 (283)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEECCCCCC----CC-----HHH
T ss_conf 575379999999999999998779977764792229999999999999-99719999997687454----89-----899
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+++...|.++.++.++++++|-|--. ..++ .|.|+.++
T Consensus 180 ~~~i~~~l~~l~~e~g~TvI~itHd~~--------~a~~-aDrv~vm~ 218 (283)
T PRK13640 180 KEQILKLIRKLMKDNNLTIISITHDID--------EAAG-ADQVLVLD 218 (283)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECHH--------HHHH-CCEEEEEE
T ss_conf 999999999999706989999978878--------9970-99899999
No 171
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.79 E-value=0.00093 Score=46.98 Aligned_cols=168 Identities=17% Similarity=0.232 Sum_probs=96.6
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--CC--CCCEEEEECCCCHHHHHHHHH---HCC
Q ss_conf 66323781248888659857870899954987518899999999985--03--981999986463047888875---201
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA--YK--KHRITYVSGEEAIGQIRLRAQ---RLN 141 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a--~~--g~~vlYvS~EEs~~Qi~~Ra~---Rl~ 141 (479)
.+-+.|||.-+|-++ =+.+|+=++|.|.+|+|||+|+.+++.+.. +. ...++|+.--|..+.+..-.+ .-+
T Consensus 50 ~e~l~TGIkaID~l~--pig~GQR~gIfgg~GvGKs~L~~~i~~~~~~~~~~~~~v~V~~~IGer~rev~e~~~~l~~~~ 127 (276)
T cd01135 50 EEMIQTGISAIDGMN--TLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETG 127 (276)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEHHHHHHHHHHHHCCC
T ss_conf 863225853540546--723676633205788636789999999877513688735999615553257999999987166
Q ss_pred CCCCCHHEECCCC---HH---------HHHHHHH-HCCCCCEEEECHHHHHHH------------HHHCCCCCCHHHHHH
Q ss_conf 5775100003478---89---------9999997-316982899721687665------------420445563679999
Q gi|254780334|r 142 TINSSVYIAIETN---VE---------DIIATLI-TNEKPDLVIIDSIQTLWS------------QTAESSPGTVIQVRT 196 (479)
Q Consensus 142 ~~~~~i~~~~e~~---l~---------~il~~~i-~~~~~~~vVIDSIQtl~~------------~~~~s~~GsvsQvre 196 (479)
.....+.+....+ .. .+-+..- ++.+--++++||+..... +...+.|+++...
T Consensus 128 ~l~~tvvv~ata~~~p~~r~~a~~~a~aiAEyFr~~~Gk~VLl~~D~ltr~A~A~REisl~~g~~P~~~gYp~~vf~~-- 205 (276)
T cd01135 128 ALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTD-- 205 (276)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH--
T ss_conf 512101466348897688878888877899998873699779994568899999999998648999878888509988--
Q ss_pred HHHHHHHHHH-----HCCCEEEEEEEECCCCCCCCHH--HHHHHHHEEEEEEC
Q ss_conf 9999999753-----0797899986303665433114--57877530278515
Q gi|254780334|r 197 SVQAMIQYAK-----KNGVAMVLVGHVTKEGQIAGPR--VIEHMVDAVLYFEG 242 (479)
Q Consensus 197 ~~~~L~~~AK-----~~~i~vilighvTK~G~iAGp~--~LeH~VD~vl~~eg 242 (479)
..+|..-|- .--||.|-+- .+..+.+..|- .+-.+.|..++|+-
T Consensus 206 -l~~l~ERag~~~~~~GSITa~~~v-~~~~dD~~~pi~~~~~si~DG~i~Lsr 256 (276)
T cd01135 206 -LATIYERAGRVEGRNGSITQIPIL-TMPNDDITHPIPDLTGYITEGQIVLDR 256 (276)
T ss_pred -HHHHHHHCCCCCCCCEEEEEEEEE-ECCCCCCCCCHHHHHHHHCCEEEEECH
T ss_conf -678887224679998018999899-447988677667777656045999979
No 172
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.79 E-value=0.0032 Score=43.04 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 85787089995498751889999999998
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASL 114 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~ 114 (479)
-+.+|.++-|.|+.|+|||||+.-++.-.
T Consensus 22 ~i~~Ge~~~iiG~SGsGKSTll~~i~gL~ 50 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88799899999999981999999997445
No 173
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.79 E-value=0.00037 Score=49.91 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 85787089995498751889999999998503981999986
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
-+.+|..+.|.|+.|+|||||+--++.-..-.. -.+|+.+
T Consensus 26 ~i~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~~-G~I~i~g 65 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS-GSVLLDG 65 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECC
T ss_conf 987999999999999859999999967254786-5899999
No 174
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.79 E-value=0.00096 Score=46.85 Aligned_cols=117 Identities=18% Similarity=0.257 Sum_probs=71.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-----CCHHHHH-HHHHHCCCCCCCHHEECCCCHHHHHHHHH
Q ss_conf 70899954987518899999999985039819999864-----6304788-88752015775100003478899999997
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE-----EAIGQIR-LRAQRLNTINSSVYIAIETNVEDIIATLI 163 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E-----Es~~Qi~-~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i 163 (479)
|-++||.|-..+|||.++.+++... +.+++|+..- |..+.|. .|.+| + .....+-...++.+.+...
T Consensus 1 gmi~LVtGG~rSGKS~~AE~la~~~---~~~~~YiAT~~~~D~Em~~RI~~Hr~~R-~--~~w~TiE~p~~l~~~l~~~- 73 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPLDDEMAARIAHHRQRR-P--AHWQTVEEPLDLAELLRAD- 73 (170)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHCC-C--CCCEEEECCCCHHHHHHHH-
T ss_conf 9899997987634899999999856---9982999758888878999999999737-8--9957996466789999874-
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 31698289972168766542044556367999999999997530797899986
Q gi|254780334|r 164 TNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 164 ~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
....+.+.||++.+..+..+-...+ .++......|....++...++++|.
T Consensus 74 -~~~~~~vLlDclt~wl~N~l~~~~~--~~~~~~~~~ll~~l~~~~~~~ViVs 123 (170)
T PRK05800 74 -AAPGRCVLVDCLTTWVTNLLFEDGE--EAIAAEIEALLAALQRLPAKIILVS 123 (170)
T ss_pred -CCCCCEEEEHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf -5778868722678999998750236--6799999999999982799789997
No 175
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.79 E-value=0.00097 Score=46.82 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=74.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH------------------------------
Q ss_conf 85787089995498751889999999998503981999986463047888------------------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL------------------------------ 135 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~------------------------------ 135 (479)
-+.+|.++-|.|+-|+|||||+--++.-.....+.+++ .+. .....+.
T Consensus 34 ~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~-~~~-~i~~~~~~i~~vfQ~~~l~~~~tV~eni~~gl~~~~~ 111 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPTAGDLLA-GTA-PLAEAQEDTRLMFQDARLLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE-CCE-EHHHHHHCEEEEECCCCCCCCCCHHHHHHHHCCCCHH
T ss_conf 88799899999899888999999996589888870898-987-5544311007993256447677899998632141069
Q ss_pred -----HHHHCCCCCCCHHEECCCCHH--H--HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -----875201577510000347889--9--9999973169828997216876654204455636799999999999753
Q gi|254780334|r 136 -----RAQRLNTINSSVYIAIETNVE--D--IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAK 206 (479)
Q Consensus 136 -----Ra~Rl~~~~~~i~~~~e~~l~--~--il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK 206 (479)
..+++++....-....+.+-- + .++.. --.+|++++.|=.. +.+| +..-+++...|.++++
T Consensus 112 ~~~~e~l~~vgL~~~~~~~p~~LSGGqkQRvaiAra-L~~~P~lLlLDEPt----sgLD-----~~~~~~i~~ll~~L~~ 181 (257)
T PRK11247 112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARA-LIHRPRLLLLDEPL----GALD-----ALTRIEMQDLIESLWQ 181 (257)
T ss_pred HHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HHHHHHHHHHHHHHHH
T ss_conf 999999998599135536944489999999999999-84599999980987----6579-----9999999999999999
Q ss_pred HCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 07978999863036654331145787753027851
Q gi|254780334|r 207 KNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 207 ~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+.+++++++-|- ....+++.|-++.+.
T Consensus 182 e~g~TIi~vTHd--------l~ea~~laDRI~vm~ 208 (257)
T PRK11247 182 QHGFTVLLVTHD--------VSEAVAMADRVLLIE 208 (257)
T ss_pred HHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 609899998879--------999999699999998
No 176
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=0.00093 Score=46.95 Aligned_cols=136 Identities=19% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-----HHHHHHHHHHCCCCCCC--HHEECCCCHHHH
Q ss_conf 85787089995498751889999999998503981999986463-----04788887520157751--000034788999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-----IGQIRLRAQRLNTINSS--VYIAIETNVEDI 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-----~~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~i 158 (479)
=+.+|.++.|.|+-|+|||||+.-++.-.....+.+. +.+..- ...++....++|....+ ..++..+-.+++
T Consensus 29 ~i~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~~~~~~~~~~~~~~~iG~vfQ~p~~ql~~~tV~eev 107 (280)
T PRK13649 29 DILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVS-VDDTDITSHSKNKEIKSIRKKVGLVFQFPESQLFEETVLKDV 107 (280)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE-ECCEECCCCCCHHHHHHHHHHEEEEEECCCCCCCCCHHHHHH
T ss_conf 9879989999959998699999999669998860899-999998777820139999876469974652123603099999
Q ss_pred ------------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC
Q ss_conf ------------------------------------------------99997316982899721687665420445563
Q gi|254780334|r 159 ------------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGT 190 (479)
Q Consensus 159 ------------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gs 190 (479)
++. +-..+|++++.|=-.+- +|
T Consensus 108 ~fg~~~~g~~~~e~~~~v~~~l~~~gL~e~~~~r~p~~LSGGqkqRvaiA~-aL~~~P~iLllDEPTsg----LD----- 177 (280)
T PRK13649 108 AFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAG-ILAMEPKILVLDEPTAG----LD----- 177 (280)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCC----CC-----
T ss_conf 868988699999999999999987699746654290009999999999999-99749999998487554----89-----
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 679999999999975307978999863036654331145787753027851
Q gi|254780334|r 191 VIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 191 vsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+...++....|.++ ++.|+++++|-|- ...+.++.|.|+.++
T Consensus 178 p~~~~~i~~ll~~l-~~~G~Tii~vTHd--------l~~v~~~aDrv~vl~ 219 (280)
T PRK13649 178 PKGRKELMTIFKKL-HQSGMTIVLVTHL--------MDDVANYADFVYVLE 219 (280)
T ss_pred HHHHHHHHHHHHHH-HHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 99999999999999-8639999998758--------999999799999998
No 177
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=97.78 E-value=0.0011 Score=46.51 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=71.5
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH--HHHH------HHHCCCCCCC---
Q ss_conf 4888865985787089995498751889999999998503981999986463047--8888------7520157751---
Q gi|254780334|r 78 ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ--IRLR------AQRLNTINSS--- 146 (479)
Q Consensus 78 eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q--i~~R------a~Rl~~~~~~--- 146 (479)
+|.+.+.. -+.++++|.|+-++|||+|+.+++......+..++|+..-+.... +... ++.++.....
T Consensus 10 ~L~~~~~~--~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 87 (223)
T pfam01637 10 ELEEWAER--GTYPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGI 87 (223)
T ss_pred HHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999966--9971899986887879999999998633468528999514443799999888889999998765123322
Q ss_pred -HHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHCCCEEEEEE
Q ss_conf -0000347889999999731698289972168766542044556367999999999-997530797899986
Q gi|254780334|r 147 -VYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAM-IQYAKKNGVAMVLVG 216 (479)
Q Consensus 147 -i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L-~~~AK~~~i~vilig 216 (479)
.......+++.+.+.+.+..+.-++|+|=.|-+... ++.+. .-.....+ ..+.++.++..++.|
T Consensus 88 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~--~~~~~----~~~~l~~~~d~~~~~~~~~~I~~G 153 (223)
T pfam01637 88 AKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGL--NGAES----YVKLLLNLIDYPPKEYHLIVVLCG 153 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHC--CCCHH----HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 2112078899999999985599659997016776402--44305----999999999975245775899972
No 178
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.77 E-value=0.0011 Score=46.49 Aligned_cols=136 Identities=22% Similarity=0.325 Sum_probs=71.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHH-CCCCCCCHHEECCC----------
Q ss_conf 8578708999549875188999999999850398199998646304-78888752-01577510000347----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRAQR-LNTINSSVYIAIET---------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra~R-l~~~~~~i~~~~e~---------- 153 (479)
-+.+|.++-|.|+-|+|||||+--++.-.....+. +++.+++-.. ....|+.+ ++....+..++...
T Consensus 22 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~gi~~v~Q~~~l~~~ltv~enl~~~~ 100 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS-IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 98899899999999985999999997798899609-99999999999999999759389635665688990999999987
Q ss_pred ----------CHHHH---------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf ----------88999---------------------------99997316982899721687665420445563679999
Q gi|254780334|r 154 ----------NVEDI---------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT 196 (479)
Q Consensus 154 ----------~l~~i---------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre 196 (479)
.++.+ ++..+ -.+|++++.|-..+ .+| +...++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL-~~~P~lllLDEPt~----gLD-----~~~~~~ 170 (222)
T cd03224 101 YARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARAL-MSRPKLLLLDEPSE----GLA-----PKIVEE 170 (222)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCCC----CCC-----HHHHHH
T ss_conf 63581359999999998866379987484544899999999999999-64999999938654----799-----999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
....|.++ ++.+++++++-|- ...++.+.|.++.+.
T Consensus 171 i~~~l~~l-~~~g~tii~vtHd--------l~~~~~~~Drv~vl~ 206 (222)
T cd03224 171 IFEAIREL-RDEGVTILLVEQN--------ARFALEIADRAYVLE 206 (222)
T ss_pred HHHHHHHH-HHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 99999999-9569999999085--------899999699999997
No 179
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.77 E-value=0.00078 Score=47.52 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=73.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH-HHHHHHCCCCCCCHHEECCC-----------
Q ss_conf 857870899954987518899999999985039819999864630478-88875201577510000347-----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQI-RLRAQRLNTINSSVYIAIET----------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi-~~Ra~Rl~~~~~~i~~~~e~----------- 153 (479)
-+.+|+++-+.|+-|+|||||+-.++.-+....+. +++.+++....- ..| .+++...+...++...
T Consensus 27 ~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~-i~i~G~d~~~~~~~~r-~~ig~~~q~~~l~~~ltv~e~l~~~~~ 104 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF-ATVDGFDVVKEPAEAR-RRLGFVSDSTGLYDRLTARENLEYFAG 104 (218)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHH-CCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 98598299999999984999999997797789748-9999999886979896-287998077667999989999999999
Q ss_pred --------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf --------------------88999-----------------99997316982899721687665420445563679999
Q gi|254780334|r 154 --------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT 196 (479)
Q Consensus 154 --------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre 196 (479)
++++. +... --.+|++++.|=.. ..+| |.+. ++
T Consensus 105 ~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~la~a-l~~~P~lliLDEPt----~gLD--~~~~---~~ 174 (218)
T cd03266 105 LYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARA-LVHDPPVLLLDEPT----TGLD--VMAT---RA 174 (218)
T ss_pred HCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC--HHHH---HH
T ss_conf 8499989999999999997499557514432278268899999999-86699899997987----6769--9999---99
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+-..|.++ ++.+.+++++-|.-.+ +|.+.|-++.+.
T Consensus 175 i~~~l~~l-~~~g~til~~sH~l~e--------~~~l~dri~vl~ 210 (218)
T cd03266 175 LREFIRQL-RALGKCILFSTHIMQE--------VERLCDRVVVLH 210 (218)
T ss_pred HHHHHHHH-HHCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf 99999999-8579999998987899--------999699999998
No 180
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.77 E-value=0.00058 Score=48.45 Aligned_cols=136 Identities=18% Similarity=0.358 Sum_probs=78.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHHHCCCCCCCHHEECCCC-HHHHH
Q ss_conf 8578708999549875188999999999850398199998646-----30478888752015775100003478-89999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-----AIGQIRLRAQRLNTINSSVYIAIETN-VEDII 159 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~-l~~il 159 (479)
-+.+|.++-|.|+.|+|||||+ .+...+.+.....+++.+.+ ....-..|.+++|....+..++...+ .|++.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLL-niig~ld~pt~G~v~i~g~~~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHH
T ss_conf 8749989999899999899999-999646678884699998886758988999997774899875677789888999998
Q ss_pred ------------------------------------------------HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf ------------------------------------------------99973169828997216876654204455636
Q gi|254780334|r 160 ------------------------------------------------ATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 160 ------------------------------------------------~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
+.++ -.+|++++-|=- +..+|+.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~~LSGGqqQRVAIARAL-~~~P~iilADEP----TgnLD~~---- 176 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL-INNPKIILADEP----TGNLDSK---- 176 (226)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCHHCCHHHHHHHHHHHHH-HCCCCEEEEECC----CCCCCHH----
T ss_conf 6998747873679999999998669812323588122697999999999998-249986996076----6658867----
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 79999999999975307978999863036654331145787753027851
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
--+++..-|..++++.+.++++|-|- | .+-...|.++++.
T Consensus 177 -t~~~V~~ll~~~~~~~g~tii~VTHD--------~-~lA~~~dr~i~l~ 216 (226)
T COG1136 177 -TAKEVLELLRELNKERGKTIIMVTHD--------P-ELAKYADRVIELK 216 (226)
T ss_pred -HHHHHHHHHHHHHHHCCCEEEEECCC--------H-HHHHHCCEEEEEE
T ss_conf -89999999999987469899999089--------8-9997489899984
No 181
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.76 E-value=0.00042 Score=49.47 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|..+.|.|+.|+|||||+--++.-..-.. -.+++.+.
T Consensus 25 ~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~-G~I~idg~ 65 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS-GEILLDGV 65 (238)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCC-CEEEECCE
T ss_conf 976999999999999989999999823861885-18999999
No 182
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.76 E-value=0.0013 Score=45.79 Aligned_cols=130 Identities=18% Similarity=0.288 Sum_probs=81.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH--CCCCCEEEEECC----CCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHH
Q ss_conf 7870899954987518899999999985--039819999864----6304788887520157751000034788999999
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLA--YKKHRITYVSGE----EAIGQIRLRAQRLNTINSSVYIAIETNVEDIIAT 161 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a--~~g~~vlYvS~E----Es~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~ 161 (479)
.++.++.+.||.|+||||=+..+|+... ....+|.++|.. -..+|++..|+-|+++-.- +.+..+++..+..
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v--v~~~~el~~ai~~ 278 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV--VYSPKELAEAIEA 278 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEE--ECCHHHHHHHHHH
T ss_conf 46857999899887588799999999975325760689971441152899999999986995599--6399999999998
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEE
Q ss_conf 973169828997216876654204455636799999999999753-079789998630366543311457877530278
Q gi|254780334|r 162 LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAK-KNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLY 239 (479)
Q Consensus 162 ~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK-~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~ 239 (479)
+ ...|+|.||.+- -++- ..+-..+|..+.. .+++-++|+=-.|-. .+.|.++++..-.
T Consensus 279 l---~~~d~ILVDTaG--------rs~~----D~~~i~el~~~~~~~~~i~~~Lvlsat~K-----~~dlkei~~~f~~ 337 (407)
T COG1419 279 L---RDCDVILVDTAG--------RSQY----DKEKIEELKELIDVSHSIEVYLVLSATTK-----YEDLKEIIKQFSL 337 (407)
T ss_pred H---HCCCEEEEECCC--------CCCC----CHHHHHHHHHHHHCCCCCEEEEEEECCCC-----HHHHHHHHHHHCC
T ss_conf 5---318889996899--------8833----78999999999703566217999845764-----6889999997245
No 183
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.76 E-value=0.00027 Score=50.84 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=60.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC---CCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 899954987518899999999985039819999864---63047888875201577510000347889999999731698
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE---EAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E---Es~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
++++.|-||+||||++-+++..+...|..+++++.+ ++....+...+. ... ..+...+...+. +.
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d~~~~~~~~~~~~~Ek---------~~r-~~~~~~v~~~l~--~~ 68 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTDLIRESFPVWKEKYEE---------FIR-DSTLYLIKTALK--NK 68 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHCCHHHHH---------HHH-HHHHHHHHHHHC--CC
T ss_conf 978967899989999999999999829965996552002120003367799---------989-999999999843--37
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 289972168766542044556367999999999997530797899986
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
.+||+||.- . .+-.=.+|..+||..+++...|.
T Consensus 69 ~~vI~D~~n-----Y----------iKg~RYEL~clAk~~~t~~c~I~ 101 (249)
T TIGR03574 69 YSVIVDDTN-----Y----------YNSKRRDLINIAKEYNKNYIIIY 101 (249)
T ss_pred CEEEECCCC-----H----------HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 669972732-----7----------88999999999998499869999
No 184
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.76 E-value=0.00034 Score=50.14 Aligned_cols=95 Identities=20% Similarity=0.361 Sum_probs=64.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCC
Q ss_conf 70899954987518899999999985039819999864630478888752015775100003478899999997316982
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPD 169 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~ 169 (479)
+....|.|++|+|||.|+--++..+...+.++.|++.++-..... ++++. -...+
T Consensus 38 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~----------------------~~l~~---l~~~d 92 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADP----------------------EVLEG---LEQAD 92 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH----------------------HHHHH---CCCCC
T ss_conf 886999899999889999999999862699579952999877539----------------------99972---74489
Q ss_pred EEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 8997216876654204455636799999999999753079789998630
Q gi|254780334|r 170 LVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 170 ~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighv 218 (479)
+++||-+|.+... + ...+....|...+++.+..+++.+..
T Consensus 93 ~l~iDDi~~i~~~-----~----~~e~~lF~l~N~~~~~~~~ilits~~ 132 (226)
T TIGR03420 93 LVCLDDVEAIAGQ-----P----EWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred EEEEECHHHHCCC-----H----HHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 9999663334378-----3----78999999999998652828986788
No 185
>PRK04195 replication factor C large subunit; Provisional
Probab=97.76 E-value=0.0006 Score=48.36 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 64031333455666323781248888659857870899954987518899999999985039819999
Q gi|254780334|r 57 SLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYV 124 (479)
Q Consensus 57 ~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYv 124 (479)
+|..++|+-.++... ..=...++..+- |-++....|+.|+||+||||++.-+|..+ |..++-+
T Consensus 9 RPk~~~divg~~~~v-~~l~~Wl~~w~~-g~~~~k~lLL~GPpGvGKTT~a~~lAk~~---g~~viEl 71 (403)
T PRK04195 9 RPKSLSDVVGNEKAK-KQLREWIESWLK-GKPPKKALLLYGPPGVGKTSLAHALANDY---GWEVIEL 71 (403)
T ss_pred CCCCHHHHHCCHHHH-HHHHHHHHHHHC-CCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEE
T ss_conf 899899985889999-999999999873-99657469988939987999999999984---9985997
No 186
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.75 E-value=0.00039 Score=49.72 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 5985787089995498751889999999998503981999986
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
.==+.||..+-|.|+.|+|||||+--++.-..-..++ +++.+
T Consensus 355 sl~i~~Ge~vaiVG~SGsGKSTL~~LL~gly~p~~G~-I~idg 396 (585)
T PRK13657 355 SFEAKPGQTVAIVGPTGAGKSTLINLLHRVFDPQSGR-IRIDG 396 (585)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC-EEECC
T ss_conf 3897599889998898986999999986015788796-75898
No 187
>PRK10908 cell division protein FtsE; Provisional
Probab=97.75 E-value=0.00089 Score=47.10 Aligned_cols=136 Identities=18% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECC-C-------
Q ss_conf 8578708999549875188999999999850398199998646----304788887520157751000034-7-------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIE-T------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e-~------- 153 (479)
-+.+|.++-|.|+-|+|||||+--++.-..-..+++ ++.+++ +..++.....+++....+..++.+ +
T Consensus 24 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~~~~~~r~~ig~v~Q~~~l~~~~tv~eni~~ 102 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI-WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI 102 (222)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECCEECCCCCHHHHHHHHHCCEEECCCCCCCCCCEEEHHHHH
T ss_conf 996998999999998079999999965999986299-9999998756666779987302477468301689770045657
Q ss_pred -------CHHH-------H--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf -------8899-------9--------------------------99997316982899721687665420445563679
Q gi|254780334|r 154 -------NVED-------I--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 154 -------~l~~-------i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
.-++ . ++.. --.+|++++.|=.. ..+| ...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~p~~LSGGq~QRvaiAra-L~~~P~iLllDEPt----~~LD-----~~~ 172 (222)
T PRK10908 103 PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA-VVNKPAVLLADEPT----GNLD-----DAL 172 (222)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HHH
T ss_conf 8988499989999999999987487657648876689689999999999-97699999990987----6679-----999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+++...|..+. +.+++++++-|- ...++.+.|.++.++
T Consensus 173 ~~~v~~~l~~l~-~~g~tvl~vtHd--------~~~~~~~~dri~vl~ 211 (222)
T PRK10908 173 SEGILRLFEEFN-RVGVTVLMATHD--------IGLISRRSYRMLTLS 211 (222)
T ss_pred HHHHHHHHHHHH-HCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 999999999998-619999999479--------999998699999997
No 188
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.75 E-value=0.00067 Score=48.00 Aligned_cols=127 Identities=19% Similarity=0.191 Sum_probs=77.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEE-CCCCHHHHHHHHHH
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000-34788999999973
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIA-IETNVEDIIATLIT 164 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~-~e~~l~~il~~~i~ 164 (479)
=+.+|.++-|.|+.|+|||||+--++..+.-..+.+.+ .+.. .. .....+.+. .+..--. ++.. -
T Consensus 21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~~G~i~~-~g~~-~~----------~~pq~~~LSGGqrQRv~-iAra-l 86 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW-DGIT-PV----------YKPQYIDLSGGELQRVA-IAAA-L 86 (177)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE-CCCC-EE----------CCCCCCCCCHHHHHHHH-HHHH-H
T ss_conf 55899899998999999999999996886788994666-6861-22----------15551507989999999-9999-8
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECC
Q ss_conf 1698289972168766542044556367999999999997530797899986303665433114578775302785155
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGG 243 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege 243 (479)
-.+|++++.|=-. +.+| +.+-.+....+.+++++.+.++++|-|- ....+++.|-++-++|+
T Consensus 87 ~~~p~lllLDEPt----s~LD-----~~~r~~i~~~ik~l~~~~~~Tvl~vsHd--------l~~a~~~aDrI~vl~g~ 148 (177)
T cd03222 87 LRNATFYLFDEPS----AYLD-----IEQRLNAARAIRRLSEEGKKTALVVEHD--------LAVLDYLSDRIHVFEGE 148 (177)
T ss_pred HCCCCEEEECCCC----CCCC-----HHHHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEECC
T ss_conf 2399999974886----5389-----9999999999999999659779998588--------99999869999999389
No 189
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=0.0013 Score=45.81 Aligned_cols=136 Identities=16% Similarity=0.236 Sum_probs=70.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHH-HHCCCCCCCHHEECC-----------
Q ss_conf 8578708999549875188999999999850398199998646304-788887-520157751000034-----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRA-QRLNTINSSVYIAIE----------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra-~Rl~~~~~~i~~~~e----------- 152 (479)
-+.+|.++-|.|+-|+|||||+--++.......+. +++.+++-.. .....+ +.++....+..++..
T Consensus 27 ~i~~Gei~~liG~NGaGKSTLl~~i~G~~~~~~G~-I~~~G~~i~~~~~~~~~r~~i~~vpq~~~~~~~ltv~enl~~~~ 105 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR-IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCCHHHHHHHHC
T ss_conf 98699799998799975999999996799889628-99999988879989998706478355664577788999987510
Q ss_pred -----CC----HHHH---------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf -----78----8999---------------------------99997316982899721687665420445563679999
Q gi|254780334|r 153 -----TN----VEDI---------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT 196 (479)
Q Consensus 153 -----~~----l~~i---------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre 196 (479)
.. ++.+ ++.. --.+|++++.|=.. ..+| +...++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iAra-L~~~P~lLlLDEPt----~gLD-----~~~~~~ 175 (237)
T PRK11614 106 FFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRA-LMSQPRLLLLDEPS----LGLA-----PIIIQQ 175 (237)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HHHHHH
T ss_conf 1378678999999999865555676544223489988599999999-85699999995975----5799-----999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+...|.++ ++.+++++++-|- ...++.+.|.++.+.
T Consensus 176 i~~~l~~l-~~~g~tii~vsH~--------l~~~~~~aDrv~vl~ 211 (237)
T PRK11614 176 IFDTIEQL-REQGMTIFLVEQN--------ANQALKLADRGYVLE 211 (237)
T ss_pred HHHHHHHH-HHCCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 99999999-9679999999475--------899999699999997
No 190
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.75 E-value=0.00072 Score=47.79 Aligned_cols=142 Identities=23% Similarity=0.329 Sum_probs=80.3
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--------------HHHHH-HHHHHCCCCCC-C
Q ss_conf 65985787089995498751889999999998503981999986463--------------04788-88752015775-1
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA--------------IGQIR-LRAQRLNTINS-S 146 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs--------------~~Qi~-~Ra~Rl~~~~~-~ 146 (479)
--|-+.+|.++-|.|+-|+|||||+--++.-+.-.++.+ ++.++.- ..++- ......+.... .
T Consensus 18 ~~Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~~G~I-~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 96 (246)
T cd03237 18 EGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-EIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFK 96 (246)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 688465798999997999769999999977878886079-9898205768743325777279999998864312127999
Q ss_pred HHEECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 000034788999-----------------999973169828997216876654204455636799999999999753079
Q gi|254780334|r 147 VYIAIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG 209 (479)
Q Consensus 147 i~~~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~ 209 (479)
..++....++++ ++..+ -.+|++++.|=-. +.+| +..-.++...|.+++++.+
T Consensus 97 ~e~~~~l~l~~~~~r~~~~LSGGqkQRv~iA~aL-~~~p~ilLLDEPt----s~LD-----~~~~~~i~~~i~~l~~~~~ 166 (246)
T cd03237 97 TEIAKPLQIEQILDREVPELSGGELQRVAIAACL-SKDADIYLLDEPS----AYLD-----VEQRLMASKVIRRFAENNE 166 (246)
T ss_pred HHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC-----HHHHHHHHHHHHHHHHHCC
T ss_conf 9999884995676487002898599999999998-4199999984898----7689-----9999999999999998679
Q ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECC
Q ss_conf 7899986303665433114578775302785155
Q gi|254780334|r 210 VAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGG 243 (479)
Q Consensus 210 i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege 243 (479)
.++++|-| .......+.|.++.|+|+
T Consensus 167 ~Tvi~VtH--------Dl~~a~~~aDrIivl~G~ 192 (246)
T cd03237 167 KTAFVVEH--------DIIMIDYLADRLIVFEGE 192 (246)
T ss_pred CEEEEECC--------CHHHHHHHCCEEEEECCC
T ss_conf 89999837--------899999869999998188
No 191
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=97.75 E-value=0.00063 Score=48.20 Aligned_cols=167 Identities=15% Similarity=0.233 Sum_probs=93.1
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH---HCCCCCC
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047888875---2015775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ---RLNTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~---Rl~~~~~ 145 (479)
.+-+.|||.-+|-++ =+.+|+=.+|.|++|+|||+|+++...+-...+..|+|+.--|..+.+..-.+ .-+....
T Consensus 143 ~epL~TGIkaID~l~--pigrGQR~gIfg~~GvGKT~L~~~~I~nq~~~~vi~Vyv~IGer~~ev~~~v~~l~~~gal~~ 220 (502)
T PRK13343 143 TEPLQTGLKVIDALI--PIGRGQRELIIGDRQTGKTAIAIDAIINQKDKDVICVYVAIGQKASTVARVIDTLREHGALEY 220 (502)
T ss_pred CCCCCCCEEEEECCC--CCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHCCCCHH
T ss_conf 754312606740556--646785775136788880489999999725788749999960451659899999876485131
Q ss_pred CHHEECCCC---H---------HHHHHHHHHCCCCCEEEECHHHHHH---------H---HHHCCCCCCHHHHHHHHHHH
Q ss_conf 100003478---8---------9999999731698289972168766---------5---42044556367999999999
Q gi|254780334|r 146 SVYIAIETN---V---------EDIIATLITNEKPDLVIIDSIQTLW---------S---QTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 146 ~i~~~~e~~---l---------~~il~~~i~~~~~~~vVIDSIQtl~---------~---~~~~s~~GsvsQvre~~~~L 201 (479)
.+.+....+ . -.+-+...++.+--++++||+.... . +.-.+.||++... ..+|
T Consensus 221 tvvV~ata~~p~~~r~~ap~~a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~---~srL 297 (502)
T PRK13343 221 TTVVVAEASDPPGLQYLAPFAGCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYL---HSRL 297 (502)
T ss_pred HEEEECCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHHH
T ss_conf 2245237789868875556652025799996699679999566899999989999748998766769458877---2689
Q ss_pred HH-HHH---HC---CCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 99-753---07---9789998630366543311--45787753027851
Q gi|254780334|r 202 IQ-YAK---KN---GVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~-~AK---~~---~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~e 241 (479)
.. .+| ++ .+|.+-+-. |..+.+..| ..+--+.|..++|+
T Consensus 298 lERa~~~~~~~ggGSITalp~V~-~~~dDis~pIp~~v~sItDGqIvLs 345 (502)
T PRK13343 298 LERATKLSPELGGGSLTALPIIE-TQAGDLAAYIPTNLISITDGQIFLD 345 (502)
T ss_pred HHHHHHCCCCCCCEEEEEEEEEE-CCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 98887526889984664516997-2488756634565652226169972
No 192
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=0.00041 Score=49.53 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|..+.|.|+.|+|||||+.-++.-.....+ .+|+.+.
T Consensus 25 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G-~I~idg~ 65 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG-QILIDGI 65 (229)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCE
T ss_conf 9879999999999998099999999668667873-8999999
No 193
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=0.00046 Score=49.16 Aligned_cols=134 Identities=17% Similarity=0.253 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC---CHH--HHHHHHHHCCCCCCCHHEECCC----------
Q ss_conf 8708999549875188999999999850398199998646---304--7888875201577510000347----------
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE---AIG--QIRLRAQRLNTINSSVYIAIET---------- 153 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE---s~~--Qi~~Ra~Rl~~~~~~i~~~~e~---------- 153 (479)
+|.++-|.|+.|+|||||+--++. +.+...--+++.++. +.. ....+-.+++....+..+++..
T Consensus 22 ~ge~~~iiGpSGsGKSTll~~i~G-L~~p~sG~I~~~G~~~~~~~~~~~~~~~~r~ig~VfQ~~~Lfp~ltV~eNi~~~l 100 (214)
T cd03297 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGL 100 (214)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 997999999997359999999984-9999964999999997665412467713487589767876578891999998887
Q ss_pred -------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -------------------88999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 154 -------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 154 -------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
.++++ ++..+ -.+|++++.|=--+ .+|. .--.++
T Consensus 101 ~~~~~~~~~~~v~e~l~~~gl~~~~~~~P~~LSGGq~QRVaiARAL-~~~P~llLlDEP~s----aLD~-----~~~~~i 170 (214)
T cd03297 101 KRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL-AAQPELLLLDEPFS----ALDR-----ALRLQL 170 (214)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCCC----CCCH-----HHHHHH
T ss_conf 6798689999999999877997786089777992999999999998-71999999808876----6699-----999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...|.++.+++++++++|-| .+....++.|.|+.++
T Consensus 171 ~~~l~~l~~~~~~t~i~VTH--------d~~e~~~ladrv~vm~ 206 (214)
T cd03297 171 LPELKQIKKNLNIPVIFVTH--------DLSEAEYLADRIVVME 206 (214)
T ss_pred HHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 99999999985998999989--------9999999699999998
No 194
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.74 E-value=0.00051 Score=48.86 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=28.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 85787089995498751889999999998503981999986
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
=+.+|..+-|.|+.|+|||||+--+..-..-..+. +++.+
T Consensus 24 ~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~~G~-I~i~g 63 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDG 63 (237)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECC
T ss_conf 98799999999999985999999996776579878-99999
No 195
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.74 E-value=0.00061 Score=48.28 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=29.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9857870899954987518899999999985039819999864
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
==+.||+.+-|.|+.|+|||||+--++.-..-..+.+ ++.+-
T Consensus 336 l~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I-~idg~ 377 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDI 377 (569)
T ss_pred CEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCE-EEECE
T ss_conf 6888997899879999987999999997764267874-65010
No 196
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00044 Score=49.33 Aligned_cols=136 Identities=18% Similarity=0.277 Sum_probs=78.2
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHHHCCCCC--CCHHEECCCCHH
Q ss_conf 598578708999549875188999999999850398199998646-----3047888875201577--510000347889
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-----AIGQIRLRAQRLNTIN--SSVYIAIETNVE 156 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-----s~~Qi~~Ra~Rl~~~~--~~i~~~~e~~l~ 156 (479)
.-.+.+|..+++.|++|+|||||+..++.-+-...+.+ ++.+.. +..+++.+ .|... .+.+++.++-.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~~---vG~VfQnpd~q~~~~tV~~ 99 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQK---VGLVFQNPDDQLFGPTVED 99 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEE-EECCCCCCCHHHHHHHHCC---EEEEEECHHHCEECCCHHH
T ss_conf 38987898999988999889999999537676889848-8778133100218876312---1699997112610475888
Q ss_pred H-----------------------------------------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf 9-----------------------------------------------99999731698289972168766542044556
Q gi|254780334|r 157 D-----------------------------------------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 157 ~-----------------------------------------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
+ .++. +-..+|++++.|--.+. +|
T Consensus 100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~-vLa~~P~iliLDEPta~----LD---- 170 (235)
T COG1122 100 EVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAG-VLAMGPEILLLDEPTAG----LD---- 170 (235)
T ss_pred HHHCCHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEHHHHH-HHHCCCCEEEECCCCCC----CC----
T ss_conf 8753574449998999999999999818611123881106973166588668-88718989997499889----89----
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 3679999999999975307978999863036654331145787753027851
Q gi|254780334|r 190 TVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 190 svsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..-.++....|.++.++.+.+++++-|--. .+.-..|.++.++
T Consensus 171 -~~~~~~l~~~l~~L~~~~~~tiii~tHd~~--------~~~~~ad~v~vl~ 213 (235)
T COG1122 171 -PKGRRELLELLKKLKEEGGKTIIIVTHDLE--------LVLEYADRVVVLD 213 (235)
T ss_pred -HHHHHHHHHHHHHHHHCCCCEEEEEECCHH--------HHHHHCCEEEEEE
T ss_conf -789999999999988607976999947478--------9885488999988
No 197
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.73 E-value=0.0015 Score=45.42 Aligned_cols=137 Identities=22% Similarity=0.303 Sum_probs=75.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHH-CCCCCCCHHEECCCCH--------
Q ss_conf 8578708999549875188999999999850398199998646304-78888752-0157751000034788--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRAQR-LNTINSSVYIAIETNV-------- 155 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra~R-l~~~~~~i~~~~e~~l-------- 155 (479)
-+.+|.++-|.|+-|+|||||+--+..-.... .-.+++.++.-.. ....|+.+ ++....+..++....+
T Consensus 22 ~v~~Gei~~liGpNGaGKSTL~~~i~Gl~~p~-~G~I~~~G~~i~~~~~~~~~r~gig~v~Q~~~lf~~lTV~Enl~~~~ 100 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL 100 (230)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC-CEEEEECCEECCCCCHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 99999799999999940999999997799999-54999999999999989999829599377742576788999999999
Q ss_pred -----------HHH---------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -----------999---------------------------999973169828997216876654204455636799999
Q gi|254780334|r 156 -----------EDI---------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 156 -----------~~i---------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
+.+ ++..+ ..+|++++.|=-. ..+ .+...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~LSGGq~Qrv~iAraL-~~~P~lLlLDEPt----~gL-----D~~~~~~i 170 (230)
T TIGR03410 101 AALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL-VTRPKLLLLDEPT----EGI-----QPSIIKDI 170 (230)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCC-----CHHHHHHH
T ss_conf 8749667889999999999999998385111999999999999999-6299889993852----269-----99999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...|.+++++.+++++++-|- ...+..+.|-++.+.
T Consensus 171 ~~~i~~l~~~~g~tvl~vtH~--------l~~~~~~adrv~vl~ 206 (230)
T TIGR03410 171 GRVIRRLRAEGGMAILLVEQY--------LDFARELADRYYVME 206 (230)
T ss_pred HHHHHHHHHCCCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 999999997179899999088--------899999699999995
No 198
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.73 E-value=0.0015 Score=45.54 Aligned_cols=59 Identities=10% Similarity=0.284 Sum_probs=39.8
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 6982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+|++++.|=-. +.+ .+...+++...|.+++++.++++++|-| .......+.|.++.+.
T Consensus 172 ~~P~lLlLDEPt----s~L-----D~~~~~~i~~~l~~l~~e~g~tvl~vtH--------dl~~~~~~aDri~vL~ 230 (273)
T PRK13547 172 QPPRYLLLDEPT----AAL-----DLAHQHRLLDTVRRLAREWNLGVLAIVH--------DPNLAARHADRIAMLA 230 (273)
T ss_pred CCCCEEEECCCC----CCC-----CHHHHHHHHHHHHHHHHHCCCEEEEEEC--------CHHHHHHHCCEEEEEE
T ss_conf 898689972874----448-----9999999999999999837989999988--------9999999799999998
No 199
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=0.00039 Score=49.75 Aligned_cols=137 Identities=22% Similarity=0.329 Sum_probs=74.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHH-------------
Q ss_conf 8578708999549875188999999999850398199998646----30478888752015775100-------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVY------------- 148 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~------------- 148 (479)
-+.+|.++-|.|+.|+|||||+.-++.-..-..+.++| .+++ +..+.+.+-.+++....+.+
T Consensus 37 ~i~~GE~lgiVGeSGsGKSTL~~~l~gl~~p~~G~I~~-~G~dl~~~~~~~~~~~r~~i~~VfQ~p~~sLnP~~~v~~~l 115 (327)
T PRK11308 37 NLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYY-QGQDLLKADPEAQKLLRRKVQIVFQNPYGSLNPRKKVGQIL 115 (327)
T ss_pred EECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEE-CCEECCCCCHHHHHHHHCCEEEEEECCHHHCCHHHHHHHHH
T ss_conf 98899999999998319999999995699988637998-99955779999999975577999868634338034243433
Q ss_pred -----EECCCCHH-------H---------------------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf -----00347889-------9---------------------------99999731698289972168766542044556
Q gi|254780334|r 149 -----IAIETNVE-------D---------------------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 149 -----~~~e~~l~-------~---------------------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
+....+-. + .++.. --.+|+++|.|=..+....
T Consensus 116 ~e~l~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~ryP~eLSGGq~QRv~IArA-L~~~P~lLi~DEPTsaLD~------- 187 (327)
T PRK11308 116 EEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARA-LMLDPDVVVADEPVSALDV------- 187 (327)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCH-------
T ss_conf 57788614899999999999999870456656645764479999999999999-8428989998478654699-------
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 3679999999999975307978999863036654331145787753027851
Q gi|254780334|r 190 TVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 190 svsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+--.++...|.++.++.++++++|-| ...++.++.|.|.-+.
T Consensus 188 --~~q~~Il~ll~~l~~~~~~t~l~ITH--------Dl~~v~~iaDri~VMy 229 (327)
T PRK11308 188 --SVQAQVLNLMMDLQQELGLSYVFISH--------DLSVVEHIADDVMVMY 229 (327)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf --99999999999999700976999869--------8999998699899998
No 200
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=97.73 E-value=0.00049 Score=48.99 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=45.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 99954987518899999999985039819999864630478888752015775100003478899999997316982899
Q gi|254780334|r 93 ILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVI 172 (479)
Q Consensus 93 ~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vV 172 (479)
+|+.|+||+|||+++..+|..+ +...++++.-+-. ....+ ..+..+.+++.. .+...|.+++
T Consensus 1 iLl~GppGtGKT~~a~~la~~~---~~~~~~v~~~~~~------~~~~g--------~~~~~i~~~f~~-a~~~~p~Il~ 62 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL---GAPFIEISGSELV------SKYVG--------ESEKRLRELFEA-AKKLAPCVIF 62 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH---CCCCEECCCCCCC------CCCCC--------HHHHHHHHHHHH-HHHCCCCEEE
T ss_conf 9878999999999999999997---8985332420122------23345--------068889999999-9974991898
Q ss_pred ECHHHHHHHHH
Q ss_conf 72168766542
Q gi|254780334|r 173 IDSIQTLWSQT 183 (479)
Q Consensus 173 IDSIQtl~~~~ 183 (479)
||-+-.+....
T Consensus 63 iDe~d~l~~~~ 73 (131)
T pfam00004 63 IDEIDALAGSR 73 (131)
T ss_pred ECHHHHHHCCC
T ss_conf 31167775167
No 201
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.73 E-value=0.00044 Score=49.34 Aligned_cols=138 Identities=20% Similarity=0.282 Sum_probs=77.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEECCC----CHHHH-HHHHHHCCCCCCCHH----------
Q ss_conf 857870899954987518899999999985039--8199998646----30478-888752015775100----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK--HRITYVSGEE----AIGQI-RLRAQRLNTINSSVY---------- 148 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g--~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~---------- 148 (479)
-+.+|.++-|.|+.|+|||||+..++.-+...+ ..-+++.|++ +..++ +.|+.+++....+.+
T Consensus 38 ~i~~GEilgivGeSGsGKSTl~~~i~gll~~~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~I~~vfQdp~~sLnP~~~i~ 117 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCHHCCCCCCHH
T ss_conf 88899899998689877999999997688888833589999999866589999998630667999607501138410456
Q ss_pred --------EECC----------------CCH---HH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHH
Q ss_conf --------0034----------------788---99-----------------999997316982899721687665420
Q gi|254780334|r 149 --------IAIE----------------TNV---ED-----------------IIATLITNEKPDLVIIDSIQTLWSQTA 184 (479)
Q Consensus 149 --------~~~e----------------~~l---~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~ 184 (479)
+... ..+ .. .++. .--.+|+++|.|=..+...
T Consensus 118 ~~l~e~l~~~~~~~~~~~~~~~~~lL~~v~l~~~~~~l~~yP~eLSGGq~QRV~IAr-AL~~~P~lLI~DEPTsaLD--- 193 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAM-ALLCRPKLLIADEPTTALD--- 193 (330)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEECCCCCCCC---
T ss_conf 655578988538998999999998888760721788873481533988999999999-9970999999738755479---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 185 ESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 185 ~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
++--.++...|.++.++.++++++|-| ...++.++.|.|.-+-
T Consensus 194 ------v~~q~~Il~ll~~l~~e~g~til~ITH--------Dl~~v~~~~DrI~VMy 236 (330)
T PRK09473 194 ------VTVQAQIMTLLNELKREFNTAIIMITH--------DLGVVAGICDKVLVMY 236 (330)
T ss_pred ------HHHHHHHHHHHHHHHHHCCCCEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf ------999999999999999974994799828--------8999998699899998
No 202
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=0.0012 Score=46.09 Aligned_cols=137 Identities=21% Similarity=0.273 Sum_probs=70.9
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHHHCCCCCC--CHHEECCCCHHH
Q ss_conf 98578708999549875188999999999850398199998646-----30478888752015775--100003478899
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-----AIGQIRLRAQRLNTINS--SVYIAIETNVED 157 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-----s~~Qi~~Ra~Rl~~~~~--~i~~~~e~~l~~ 157 (479)
=-+.+|.++-|.|+-|+|||||+..++.-+--.. -.+++.+.+ +...++....+++.... +..++..+-.++
T Consensus 28 l~I~~Ge~~~iiG~nGsGKSTLl~~l~Gll~P~s-G~V~i~G~~i~~~~~~~~~~~~r~~vg~vfQ~p~~ql~~~tV~ee 106 (286)
T PRK13641 28 FELEDGSFVALIGHTGSGKSTLMQHFNALLKPSS-GKITIAGYHITPETSNKNLKDLRKKVGLVFQFPEAQLFENTVLKD 106 (286)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-EEEEECCEECCCCCCHHHHHHHHHHEEEEEECCCCCCCCCHHHHH
T ss_conf 7986999999999998399999999965989885-499999899976665557999985154897665101261129999
Q ss_pred H------------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf 9------------------------------------------------9999731698289972168766542044556
Q gi|254780334|r 158 I------------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 158 i------------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
+ ++. +-..+|++++.|=-.+- +|
T Consensus 107 v~~g~~~~g~~~~e~~~~~~~~l~~vgl~~~~~~~~p~~LSGGqkqRvaiA~-aLa~~P~iLlLDEPTsg----LD---- 177 (286)
T PRK13641 107 VEFGPKNFGFSEQEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAG-VMAYEPEILCLDEPAAG----LD---- 177 (286)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEECCCCCC----CC----
T ss_conf 9999998699989999999999997699645554291329999999999999-99749999997397343----89----
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 3679999999999975307978999863036654331145787753027851
Q gi|254780334|r 190 TVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 190 svsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...-++....|.++. +.+.+++++-|- ...+..+.|-|+.++
T Consensus 178 -p~~~~~i~~ll~~l~-~~G~Tii~vtHd--------~~~v~~~adrv~vm~ 219 (286)
T PRK13641 178 -PEGRKEMMQIFKDYQ-KAGHTVILVTHN--------MDDVAEYADDVLVLE 219 (286)
T ss_pred -HHHHHHHHHHHHHHH-HCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf -999999999999999-639999999159--------999999799999998
No 203
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.0019 Score=44.74 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8578708999549875188999999999850398199998646
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
=+.+|.++.|.|+-|+|||||+.-++.... ...-.+++.+++
T Consensus 27 ~i~~GEi~~liG~nGaGKSTL~~~l~G~~~-~~~G~i~~~g~~ 68 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNIN 68 (510)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC-CCCEEEEECCEE
T ss_conf 998996999989999729999999837998-985699999999
No 204
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.72 E-value=0.0015 Score=45.47 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=30.7
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
..+|+++|.|=..+. +| +...++....|.++.|+.++++++|-|
T Consensus 184 ~~~P~lLilDEPTa~----LD-----~~~~~~l~~~l~~l~~~~g~tii~isH 227 (520)
T TIGR03269 184 AKEPFLFLADEPTGT----LD-----PQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred HCCCCEEEEECCCCC----CC-----HHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 459989997076335----79-----999999999999999983965999748
No 205
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.71 E-value=0.0018 Score=44.82 Aligned_cols=135 Identities=18% Similarity=0.252 Sum_probs=70.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECC-------------
Q ss_conf 8578708999549875188999999999850398199998646304788887520157751000034-------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIE------------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e------------- 152 (479)
-+.+|.++-|.|+-|+|||||+--++.-.....+. +++.+.+-.........+++....+..++..
T Consensus 24 ~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~~G~-I~i~G~~i~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~~~~~~ 102 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT-AYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARL 102 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 98499599999899973999999996698788997-79999977658898860569992356568788799999998975
Q ss_pred ------------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ------------------788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 153 ------------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 153 ------------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
.++++. ++.. --.+|++++.|=.. ..+| |. ..+++
T Consensus 103 ~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a-l~~~P~lliLDEPt----~gLD--~~---~~~~i 172 (220)
T cd03263 103 KGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIA-LIGGPSVLLLDEPT----SGLD--PA---SRRAI 172 (220)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC--HH---HHHHH
T ss_conf 699989999999999987696777507576789999999999999-95699999995887----6889--99---99999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...|..+ + .+.+++++-|- ...++++.|.++.+.
T Consensus 173 ~~~l~~~-~-~~~tii~~tH~--------l~e~~~l~dri~vl~ 206 (220)
T cd03263 173 WDLILEV-R-KGRSIILTTHS--------MDEAEALCDRIAIMS 206 (220)
T ss_pred HHHHHHH-H-CCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 9999998-4-89989999687--------899999699999998
No 206
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=97.71 E-value=0.00058 Score=48.46 Aligned_cols=127 Identities=21% Similarity=0.384 Sum_probs=78.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHHHCCCCCCCHHEECC-CCHHH--
Q ss_conf 8578708999549875188999999999850398199998646-----304788887520157751000034-78899--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-----AIGQIRLRAQRLNTINSSVYIAIE-TNVED-- 157 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-----s~~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~-- 157 (479)
=+.+|.++-|.|..|+|||||+ ++...+-..-.--++|.|++ |-++-+.|-..||-.-..=.++.+ +-+|+
T Consensus 27 ~i~~GE~~~IvG~SGSGKSTLL-HlLGGLD~PT~G~v~f~G~~l~~lS~~~~~~LRN~~LGFiYQFHHLL~dFtaLENVa 105 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLL-HLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA 105 (221)
T ss_pred EEECCCEEEEECCCCCCHHHHH-HHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHHHHHCCCEEEHHHCCCCCCHHHHHH
T ss_conf 2306633798736787168999-987306899631589706323440446788751222584443202030000268877
Q ss_pred ----------------------------------------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf ----------------------------------------------9999973169828997216876654204455636
Q gi|254780334|r 158 ----------------------------------------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 158 ----------------------------------------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
|-..+| .+|++|+=|=- +..+|..
T Consensus 106 MP~LIg~~s~~ea~~~A~~mL~~VgL~~R~~h~PSELSGGERQRvAIARALv--N~P~lvlADEP----TGNLD~~---- 175 (221)
T TIGR02211 106 MPLLIGKKSKKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV--NQPSLVLADEP----TGNLDNN---- 175 (221)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCEEECCCC----CCHHHHH----
T ss_conf 7775358998899999999988607334455577734563379999999861--89765861298----8532377----
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH
Q ss_conf 799999999999753079789998630366543311
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGP 227 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp 227 (479)
-.+.+..-+..+-++.++++++|-| |-++|+.
T Consensus 176 -~a~~iF~L~~eLN~~~~TsflvVTH---D~~LA~k 207 (221)
T TIGR02211 176 -NAKSIFELMLELNRELNTSFLVVTH---DLELAKK 207 (221)
T ss_pred -HHHHHHHHHHHHHHHCCCEEEEEEC---CHHHHHC
T ss_conf -7999999999988653916999834---7578730
No 207
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=0.00054 Score=48.69 Aligned_cols=138 Identities=22% Similarity=0.281 Sum_probs=72.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHH-HHHHHHHCCCCCCCHHEECC-CCHHH--
Q ss_conf 8578708999549875188999999999850398199998646----3047-88887520157751000034-78899--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQ-IRLRAQRLNTINSSVYIAIE-TNVED-- 157 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Q-i~~Ra~Rl~~~~~~i~~~~e-~~l~~-- 157 (479)
-+.+|.++-|.|+.|+|||||+--++.-..-..+. +++.+++ +..+ ...|..+++....+..++.. +-.++
T Consensus 31 ~i~~GE~v~iiG~sGsGKSTLl~~i~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~ 109 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGD-VIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVA 109 (233)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 98899899999999940999999996699998639-99999998869988999873797899916752377866999998
Q ss_pred -------------------H--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf -------------------9--------------------------9999731698289972168766542044556367
Q gi|254780334|r 158 -------------------I--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 158 -------------------i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
+ ++.. --.+|++++.|=.. ..+| ..
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSGGqkQRvaiAra-L~~~P~illlDEPT----s~LD-----~~ 179 (233)
T PRK11629 110 MPLLIGKKKPAEINSRALEMLKAVGLEHRANHRPSELSGGERQRVAIARA-LVNNPRLVLADEPT----GNLD-----AR 179 (233)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCEECHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HH
T ss_conf 89998499999999989999987273667749846638999999999999-96599999992888----8799-----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 99999999999753079789998630366543311457877530278515
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
-.+++...|.++.++.++++++|-|- ....+++-|.+...+|
T Consensus 180 ~~~~i~~~l~~l~~~~g~tvi~vtHd--------l~~a~~~~r~i~m~dG 221 (233)
T PRK11629 180 NADSIFQLLGELNRLQGTAFLVVTHD--------LQLAKRMSRQLEMRDG 221 (233)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEECC
T ss_conf 99999999999999709899998689--------9999960989999799
No 208
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=97.71 E-value=0.00043 Score=49.38 Aligned_cols=112 Identities=24% Similarity=0.389 Sum_probs=58.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEE-EEECCCCHHHHHHHHHHCCCC------CCCH---------------HEE
Q ss_conf 999549875188999999999850398199-998646304788887520157------7510---------------000
Q gi|254780334|r 93 ILVGGDPGIGKSTLLMQTAASLAYKKHRIT-YVSGEEAIGQIRLRAQRLNTI------NSSV---------------YIA 150 (479)
Q Consensus 93 ~Li~G~PGvGKSTL~Lqia~~~a~~g~~vl-YvS~EEs~~Qi~~Ra~Rl~~~------~~~i---------------~~~ 150 (479)
++|+|+||+|||||+..++..+...|.++- |++-| -. ....|.|.. .+.. |..
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~~~v~GF~T~e-vr----e~g~R~GF~iv~l~~g~~~~la~~~~~~~~~vGky~v 76 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPE-VR----EGGRRIGFDIVDLASGERGPLARVGGVSGPRVGKYVV 76 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC-EE----CCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEE
T ss_conf 899789998899999999999986797074899302-12----5893789999990478267744406887754577166
Q ss_pred CCCCHHHHHHHHHHC--CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 347889999999731--69828997216876654204455636799999999999753079789998630366
Q gi|254780334|r 151 IETNVEDIIATLITN--EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE 221 (479)
Q Consensus 151 ~e~~l~~il~~~i~~--~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~ 221 (479)
....++.+...++.. .+++++|||=|--|-.. + + +.+ ..+.... +.+.+++.+=|...+
T Consensus 77 ~~~~fe~~~~~~L~~a~~~~dlivIDEIG~mEl~---s-~----~F~---~~v~~~l-~~~~~vl~ti~~~~~ 137 (168)
T pfam03266 77 NLEEFEEIALPALRRALEEADLIIIDEIGPMELK---S-P----KFR---EAIEEVL-SSNKPVLAVVHRRSD 137 (168)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH---H-H----HHH---HHHHHHH-CCCCCEEEEEEECCC
T ss_conf 6899999999999840668989999763145331---4-9----999---9999996-699979999972589
No 209
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.70 E-value=0.00056 Score=48.55 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=78.7
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH---HHHHHH------------------
Q ss_conf 48888659857870899954987518899999999985039819999864630---478888------------------
Q gi|254780334|r 78 ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI---GQIRLR------------------ 136 (479)
Q Consensus 78 eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~---~Qi~~R------------------ 136 (479)
-||.+ ..-+.+|.++.+-|+.|+|||||+--++.-+....+.+ ++.++... .+++.+
T Consensus 20 ~l~~v-s~~i~~Gei~gllG~NGAGKTTllk~l~Gl~~p~~G~i-~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lTv~e 97 (293)
T COG1131 20 ALDGV-SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI-LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRE 97 (293)
T ss_pred EEEEE-EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCCCCCCCHHHHHCEEEEEECCCCCCCCCCHHH
T ss_conf 88604-99982895999989999989999999967977886499-99586275126765052999947877771475999
Q ss_pred -----------------------HHHCCCCCCCHHEECCCCHHH----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf -----------------------752015775100003478899----99999731698289972168766542044556
Q gi|254780334|r 137 -----------------------AQRLNTINSSVYIAIETNVED----IIATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 137 -----------------------a~Rl~~~~~~i~~~~e~~l~~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
.+++++....-......+... .+... --.+|+++++|=.. ..+|.
T Consensus 98 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~a-L~~~P~lliLDEPt----~GLDp--- 169 (293)
T COG1131 98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALA-LLHDPELLILDEPT----SGLDP--- 169 (293)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCCH---
T ss_conf 99999998499716679999999998699603288102379889999999999-96699999996997----78799---
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 3679999999999975307978999863036654331145787753027851
Q gi|254780334|r 190 TVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 190 svsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.-.++....|..++++.+.++++.-|.-.+ +|++.|.|+.+.
T Consensus 170 --~~~~~~~~~l~~l~~~g~~tvlissH~l~e--------~~~~~d~v~il~ 211 (293)
T COG1131 170 --ESRREIWELLRELAKEGGVTILLSTHILEE--------AEELCDRVIILN 211 (293)
T ss_pred --HHHHHHHHHHHHHHHCCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf --999999999999996799599998388699--------998689999998
No 210
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.70 E-value=0.0015 Score=45.46 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=69.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-----CHHHH-HHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 8999549875188999999999850398199998646-----30478-88875201577510000347889999999731
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-----AIGQI-RLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
++||.|-..+|||.++.+++.+. +.+++|+..-+ -...| +.|.+| +. ....+-...++.+.+.. .
T Consensus 1 iiLVtGG~rSGKS~~AE~la~~~---~~~~~YiAT~~~~D~Em~~RI~~Hr~~R-~~--~w~TiE~~~~l~~~l~~---~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL---GGPVTYIATAEAFDDEMAERIARHRKRR-PA--HWRTIETPRDLVSALKE---L 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHHCC-CC--CCEEEECCCCHHHHHHH---C
T ss_conf 98997786636899999999845---9981999788988989999999999668-99--96699634439999985---5
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 69828997216876654204455636-7999999999997530797899986
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTV-IQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~Gsv-sQvre~~~~L~~~AK~~~i~vilig 216 (479)
.+.+.+.||++.+..+..+....+.. ..+..-...|....++...++++|.
T Consensus 72 ~~~~~vLiDclt~wl~N~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ViVS 123 (169)
T cd00544 72 DPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVS 123 (169)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9888599860789999987413312366799999999999970899799996
No 211
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=0.0014 Score=45.62 Aligned_cols=137 Identities=18% Similarity=0.293 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC---HHHHHHHHHHCCCCCCC--HHEECCCCHHHH-
Q ss_conf 985787089995498751889999999998503981999986463---04788887520157751--000034788999-
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA---IGQIRLRAQRLNTINSS--VYIAIETNVEDI- 158 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs---~~Qi~~Ra~Rl~~~~~~--i~~~~e~~l~~i- 158 (479)
=-+.+|.++-|.|+-|+|||||+..++.-+--..+.+ ++.+++- ...+.....+++....+ ..++..+-.+++
T Consensus 23 l~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I-~v~G~~i~~~~~~~~~~r~~vg~vfQ~p~~ql~~~tV~e~i~ 101 (275)
T PRK13639 23 FKAEEGEMIAILGPNGAGKSTLFLHFNGILKPSSGSV-LIKGEPIKYDKKSLLNVRKTVGIVFQNPDDQLFAPTVEEDVA 101 (275)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECCEECCCCCHHHHHHHHHCEEEECCCHHHHCCCCHHHHHH
T ss_conf 8998998999999999649999999973989996399-999999988806599998741599338357656271999999
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
++. +-...|++++.|=-.+ .+| | .
T Consensus 102 fg~~~~g~~~~e~~~rv~~~l~~~gL~~~~~~~p~~LSGGqkqRVaiA~-aLa~~P~iliLDEPTa----gLD--p---~ 171 (275)
T PRK13639 102 FGPMNLGLSKEEVEKRVKDALKAVGMEGFERKPPHHLSGGQKKRVAIAG-ILAMNPEIMVLDEPTS----GLD--P---M 171 (275)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHCCCCEEEECCCCC----CCC--H---H
T ss_conf 9999859999999999999998779945665794449999999999988-8736998999779755----489--9---9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..+++...|.++.+ .+.+++++-|- ...+.+..|.|+.+.
T Consensus 172 ~~~~i~~ll~~l~~-~G~Tii~iTHd--------m~~~~~~adrv~vl~ 211 (275)
T PRK13639 172 GASQIMKLLYDLNK-EGITIIISTHD--------VDLVPIYANKIYVLN 211 (275)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 99999999999997-69999999389--------999999699999998
No 212
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.70 E-value=0.0016 Score=45.28 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=71.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH--HEECCC----------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510--000347----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV--YIAIET---------- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i--~~~~e~---------- 153 (479)
-+.+|.++-|.|+-|+|||||+--++.-+....+. +++.++.-.. ..|..+++....+. .++..+
T Consensus 22 ~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~~G~-I~~~g~~~~~--~~~~~~ig~v~Q~~~~~l~~~tv~~~l~~~~~ 98 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKA--KERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98 (205)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCH--HHHHCCEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 88699899998899998999999995685777873-8999999965--78744489996278644206479999970487
Q ss_pred -------CHHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -------88999--------------------------999973169828997216876654204455636799999999
Q gi|254780334|r 154 -------NVEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 154 -------~l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~ 200 (479)
..+++ ++.. --.+|++++.|=.. ..+|. ...++....
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iA~a-L~~~P~illLDEPt----~gLD~-----~~~~~i~~l 168 (205)
T cd03226 99 ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAA-LLSGKDLLIFDEPT----SGLDY-----KNMERVGEL 168 (205)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCCH-----HHHHHHHHH
T ss_conf 856079999999997699235538911289999999999999-97599999997997----65899-----999999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99975307978999863036654331145787753027851
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
|.+++++ +.+++++-|- ...+..+.|.++.++
T Consensus 169 l~~l~~~-g~tvi~itHd--------l~~~~~~~dri~vl~ 200 (205)
T cd03226 169 IRELAAQ-GKAVIVITHD--------YEFLAKVCDRVLLLA 200 (205)
T ss_pred HHHHHHC-CCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 9999979-9999998039--------899999799999981
No 213
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=97.70 E-value=0.00051 Score=48.88 Aligned_cols=136 Identities=22% Similarity=0.255 Sum_probs=74.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHC----CCCCEEEEECCCCHHHHHHHHHHCCCCCCCH--------------
Q ss_conf 8578708999549875188999999999850----3981999986463047888875201577510--------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAY----KKHRITYVSGEEAIGQIRLRAQRLNTINSSV-------------- 147 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~----~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i-------------- 147 (479)
=+.+|.++-|.|+.|+|||||+..++.-+.. ..+. +++.+++-.. ...|.++++....+.
T Consensus 25 ~v~~Ge~~aiiG~SGsGKStl~k~llgll~~~~~~~~G~-i~~dg~~~~~-~~~r~r~i~~v~Q~p~~~~~p~~~v~~~~ 102 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGR-VLADGKPVAP-CALRGRKIATIMQNPRSAFNPLHTMHTHA 102 (254)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEECCE-EEECCEECCH-HHHCCCCEEEEEECCHHHCCHHHHHHHHH
T ss_conf 898999999999998789999999957998898415789-9999999960-34305508999837522137688999999
Q ss_pred --------------H---E---ECCCCHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC
Q ss_conf --------------0---0---03478899-----------------999997316982899721687665420445563
Q gi|254780334|r 148 --------------Y---I---AIETNVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGT 190 (479)
Q Consensus 148 --------------~---~---~~e~~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gs 190 (479)
. . ..-.+.++ .++.. --.+|++++.|=..+ .+|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~l~~~P~qLSGGq~QRvaiArA-L~~~P~lLilDEPTs----~LD~---- 173 (254)
T PRK10418 103 RETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIALA-LLCEAPFIIADEPTT----DLDV---- 173 (254)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCHHHCCHHHHHHHHHHHH-HHCCCCEEEECCCCC----CCCH----
T ss_conf 9999865820599999999998399986887641926348799999999999-854999898558754----3799----
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 679999999999975307978999863036654331145787753027851
Q gi|254780334|r 191 VIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 191 vsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+ -.++...|.++.+++++++++|-|- .....++.|.++.+.
T Consensus 174 ~~-~~~il~ll~~l~~~~g~tii~vTHD--------l~~a~~~aDri~Vm~ 215 (254)
T PRK10418 174 VA-QARILDLLESIVQKRALGMLLVTHD--------MGVVARLADDVAVMS 215 (254)
T ss_pred HH-HHHHHHHHHHHHHHHCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 99-9999999999999709979999699--------999999689999998
No 214
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00066 Score=48.05 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|..+.|.|+.|+|||||+.-+..-..-. .-.+++.+.
T Consensus 24 ~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~ 64 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVD-SGRILIDGH 64 (234)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC-CCEEEECCE
T ss_conf 98799999999899982999999996676678-868999999
No 215
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.69 E-value=0.00044 Score=49.35 Aligned_cols=136 Identities=19% Similarity=0.308 Sum_probs=75.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECC--------
Q ss_conf 8578708999549875188999999999850398199998646----30478-8887520157751000034--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIE-------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e-------- 152 (479)
-+.+|.++.|.|+.|+|||||+--++.-. +...--+++.+++ +..+. ..|.++++....+..++..
T Consensus 26 ~i~~Ge~~~iiG~sGsGKTTll~~i~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~Q~~~L~~~ltV~eni~ 104 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104 (218)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 98699899999999986999999996699-99964999999998879989999986504789866752155643999999
Q ss_pred -----------------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf -----------------------788999-----------------9999731698289972168766542044556367
Q gi|254780334|r 153 -----------------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 153 -----------------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
..+++. ++.. --.+|++++.|-..+ .+| +.
T Consensus 105 ~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~LSGG~kQRv~iAra-L~~~P~llllDEPTs----~LD-----~~ 174 (218)
T cd03255 105 LPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA-LANDPKIILADEPTG----NLD-----SE 174 (218)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCC----CCC-----HH
T ss_conf 99998499989999999987676793788738876389999999999999-855999999818887----689-----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
--+.+...|.+++++.+++++++-|- +..++ +.|.|+.++
T Consensus 175 ~~~~i~~~l~~l~~~~~~tii~itHd--------~~~~~-~aDrv~~m~ 214 (218)
T cd03255 175 TGKEVMELLRELNKEAGTTIVVVTHD--------PELAE-YADRIIELR 214 (218)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHH-HCCEEEEEE
T ss_conf 99999999999999629899998968--------89998-699899998
No 216
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.68 E-value=0.00087 Score=47.18 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|.++.|.|+-|+|||||+.-++.-.....+.+ ++.++
T Consensus 26 ~i~~Gei~~liG~nGaGKSTL~~~l~G~~~~~~G~i-~~~G~ 66 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTLMKVLTGIYTRDAGTI-LYLGK 66 (501)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEE-EECCE
T ss_conf 998996999989999829999999957998984499-99999
No 217
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=0.00086 Score=47.21 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECC-------------
Q ss_conf 8578708999549875188999999999850398199998646304788887520157751000034-------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIE------------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e------------- 152 (479)
-+.+|.++-|.|+.|+|||||+--++.- -+...--+++.+++-... ..+-.+++....+..++..
T Consensus 24 ~v~~Ge~~~iiGpSGsGKSTll~~i~Gl-~~p~~G~I~~~g~~i~~~-~~~~r~ig~vfQ~~~Lfp~ltV~eNi~~~l~~ 101 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGL-ERPDSGTILFGGEDATDV-PVQERNVGFVFQHYALFRHMTVFDNVAFGLRV 101 (239)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCC-CCCCCEEEEECCEECCCC-CHHHCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9889989999999997799999999769-999863999999999999-96567767981782106799699999879973
Q ss_pred ----------------------CCHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ----------------------78899-----------------999997316982899721687665420445563679
Q gi|254780334|r 153 ----------------------TNVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 153 ----------------------~~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
..+++ .++..+ -.+|++++.|=.-+ .+|. .-
T Consensus 102 ~~~~~~~~~~e~~~rv~~~l~~v~l~~~~~~~p~eLSGGq~QRVaiARAl-~~~P~vlllDEP~s----~LD~-----~~ 171 (239)
T cd03296 102 KPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL-AVEPKVLLLDEPFG----ALDA-----KV 171 (239)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCCC----CCCH-----HH
T ss_conf 35456998999999999998654997677489666999898999999987-64999899738866----4699-----99
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-.+....|.++.++.++++++|-|- +...-++.|.++.+.
T Consensus 172 ~~~i~~~l~~l~~e~~~T~i~vTHd--------~~~a~~laDri~vm~ 211 (239)
T cd03296 172 RKELRRWLRRLHDELHVTTVFVTHD--------QEEALEVADRVVVMN 211 (239)
T ss_pred HHHHHHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 9999999999999859989999889--------999999699999998
No 218
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00085 Score=47.23 Aligned_cols=137 Identities=20% Similarity=0.319 Sum_probs=73.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHH-HHHHHHHCCCCCC--CHHEECCC-----
Q ss_conf 8578708999549875188999999999850398199998646----3047-8888752015775--10000347-----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQ-IRLRAQRLNTINS--SVYIAIET----- 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Q-i~~Ra~Rl~~~~~--~i~~~~e~----- 153 (479)
-+.+|.++-|.|+-|+|||||+..++.-+.-..+.+ ++.+.. +... ++....++|.... ...++..+
T Consensus 29 ~I~~Ge~~aiiG~nGsGKSTLl~~l~GLl~p~~G~I-~~~g~~i~~~~~~~~~~~~r~~ig~VfQ~P~~ql~~~tV~~~i 107 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV-TVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREM 107 (286)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHH
T ss_conf 986998999999999819999999970788888759-9998987555746789998740899998840222077899999
Q ss_pred ---------CHHH----------------------------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC
Q ss_conf ---------8899----------------------------------999997316982899721687665420445563
Q gi|254780334|r 154 ---------NVED----------------------------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGT 190 (479)
Q Consensus 154 ---------~l~~----------------------------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gs 190 (479)
+.+. .++. +-..+|++++.|=-.+...+
T Consensus 108 ~fg~~~~g~~~~e~~~r~~~~l~~~gl~~~~~~~~p~~LSGGqkqRVaiA~-aLa~~P~iLilDEPTagLDp-------- 178 (286)
T PRK13646 108 IFGPKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS-ILAMNPDIIVVDEPTAGLDP-------- 178 (286)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCCCCH--------
T ss_conf 867977799999999999999998499475775694329999999999999-98519899998387443898--------
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 679999999999975307978999863036654331145787753027851
Q gi|254780334|r 191 VIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 191 vsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..-+++...|.++.++.++++++|-|- -..+..+.|.|+.++
T Consensus 179 -~~~~~i~~ll~~l~~~~g~TiI~iTHd--------m~~v~~~adrv~vm~ 220 (286)
T PRK13646 179 -QSKRQVMRLLKSLQTDENKAIILISHD--------MNEVARYADEVIVMK 220 (286)
T ss_pred -HHHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf -999999999999999539899999138--------999999699999998
No 219
>PRK05642 DNA replication initiation factor; Validated
Probab=97.68 E-value=0.00074 Score=47.70 Aligned_cols=99 Identities=18% Similarity=0.368 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHH
Q ss_conf 98578708999549875188999999999850398199998646304788887520157751000034788999999973
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLIT 164 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~ 164 (479)
+|... ..+.|.|++|+|||.|+..++......+.+++|++.++..... . ++++. .
T Consensus 41 ~~~~~-~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~---------------------~-~~~~~-l- 95 (234)
T PRK05642 41 AGWTE-SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG---------------------P-ELLDN-L- 95 (234)
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---------------------H-HHHHH-H-
T ss_conf 78778-8389988999988999999999998079967997899987544---------------------9-99862-4-
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 169828997216876654204455636799999999999753079789998630
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighv 218 (479)
...++++||-||.+... . ...+....|...+++.+..+++.++.
T Consensus 96 -~~~d~l~IDDi~~i~g~--------~-~~e~~lF~l~N~~~~~~~~llits~~ 139 (234)
T PRK05642 96 -EQYELVCIDDLDVIAGK--------A-DWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred -HHCCEEEEECHHHHCCC--------H-HHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf -22798989364554688--------5-99999999999999839959995787
No 220
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.68 E-value=0.0025 Score=43.81 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-CC--CCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752-01--5775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-LN--TINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l~--~~~~ 145 (479)
.+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.+....+-.|...-||-..+ +....++ ++ ....
T Consensus 145 ~epl~TGIraID~ll--pig~GQR~gIfagsGvGKs~Ll~~i~~~~~~adv~V~~lIGeRgrE-v~efie~~~~~~~l~r 221 (442)
T PRK06315 145 RTILSTGVRCIDGML--TVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGRE-VREFIEGDLGEEGMKR 221 (442)
T ss_pred CCCCCCCCEEECCCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHHCCCCCCC
T ss_conf 875336853001127--7023777640389999888999999974403893499995511379-9999997520145213
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
.+.+....+ +. .+-+..-++.+--++++||+...
T Consensus 222 svvV~atsd~p~~~R~~a~~~A~aiAEyFrd~G~~VLl~~DslTR~ 267 (442)
T PRK06315 222 SVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRF 267 (442)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 3999617999878875558877789999986899489994370288
No 221
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.68 E-value=0.0023 Score=44.08 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=65.3
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCC
Q ss_conf 663237812488886598578708999549875188999999999850398199998646304788887520---15775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~ 145 (479)
.+-+.|||.-+|-++ =+.+|+=.+|.|++|+|||+|+-+++.+.. . ..++|..--|..+.+..-.+.+ +....
T Consensus 50 ~e~l~TGI~~ID~l~--pigrGQR~~Ifg~~g~GKt~Ll~~i~~~~~-~-~v~V~~~IGer~rev~e~~~~~~~~~~l~~ 125 (326)
T cd01136 50 DEVLPTGVRAIDGLL--TVGKGQRLGIFAGSGVGKSTLLGMIARGTT-A-DVNVIALIGERGREVREFIEKDLGEEGLKR 125 (326)
T ss_pred CCCCCCCCCHHCCCC--CCCCCCEEEEECCCCCCCCHHHHHHHHCCC-C-CEEEEEEECCCHHHHHHHHHHHHCCCCCCC
T ss_conf 875115770420026--624798787436999984667876864146-7-759999605338899999998624565322
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
.+.+.+..+ .+ .+-+...++.+--++++||+...
T Consensus 126 tvvv~atad~~~~~r~~a~~~a~~~AEyfrd~G~dVL~~~Dsltr~ 171 (326)
T cd01136 126 SVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 2899606889989999988877777889997587337875246899
No 222
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=0.0015 Score=45.52 Aligned_cols=137 Identities=18% Similarity=0.302 Sum_probs=76.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECC-CCHHHH--
Q ss_conf 8578708999549875188999999999850398199998646----304788887520157751000034-788999--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIE-TNVEDI-- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~i-- 158 (479)
-+.+|.++-|.|+.|+|||||+--+. .+.+...--+++.+.+ +..++...-.+++....+..++.. +-.+++
T Consensus 27 ~I~~Gei~giIG~SGaGKSTLlr~i~-gL~~ptsG~I~~~G~dl~~l~~~~l~~~Rr~Ig~ifQ~~~l~~~~tV~env~~ 105 (343)
T PRK11153 27 HVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL 105 (343)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCCCCHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99899899999999986999999996-59999963999999999879988999986386999506633788728999999
Q ss_pred ---------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ---------------------------------------------99997316982899721687665420445563679
Q gi|254780334|r 159 ---------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 159 ---------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
++..+ -.+|++++.|=..+... +..
T Consensus 106 ~l~~~~~~k~~~~~rv~elL~~vgL~~~~~~~p~~LSGGqkQRV~IArAL-a~~P~iLl~DEPTsaLD---------p~t 175 (343)
T PRK11153 106 PLELDNTPKDEIKRRVTELLDLVGLGDKHDSYPANLSGGQKQRVAIARAL-ASNPKVLLCDEATSALD---------PAT 175 (343)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCC---------HHH
T ss_conf 99976999999999999999877994476197511899999999999998-66999999928876589---------999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-+++...|.++.++.++++++|-| --.+++.+.|-|.-++
T Consensus 176 ~~~Il~lL~~l~~e~g~TivlITH--------dm~~v~~icdrVaVm~ 215 (343)
T PRK11153 176 TRSILELLKDINRRLGLTILLITH--------EMDVVKRICDCVAVIS 215 (343)
T ss_pred HHHHHHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 999999999999961989999888--------9999998699999998
No 223
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=0.0021 Score=44.38 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEECC
Q ss_conf 857870899954987518899999999985039--819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK--HRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g--~~vlYvS~E 127 (479)
=+.+|.++.|.|+.|+|||||+.-++. +...+ .--+++.++
T Consensus 27 ~i~~Ge~~~lvG~nGsGKSTL~~~l~G-l~p~~~~~G~i~~~g~ 69 (513)
T PRK13549 27 RVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGE 69 (513)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCCEEEEECCE
T ss_conf 988997999989999729999999956-7889997669999999
No 224
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=97.67 E-value=0.00065 Score=48.09 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=54.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHHCCCCCCCHHEECCC---CHHHHHHHHHHCC
Q ss_conf 8999549875188999999999850398199998646--3047888875201577510000347---8899999997316
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE--AIGQIRLRAQRLNTINSSVYIAIET---NVEDIIATLITNE 166 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE--s~~Qi~~Ra~Rl~~~~~~i~~~~e~---~l~~il~~~i~~~ 166 (479)
++...--=|+||||+++.+|..++++|++|+.+..+. |..++..++.+-+.......+.... .+++.++. .+..
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~-~~~~ 82 (231)
T pfam07015 4 ITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEH-AEGS 82 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHH-HHHC
T ss_conf 999617998659999999999999689959999689986889999987646888876522205660158999998-8657
Q ss_pred CCCEEEECHH
Q ss_conf 9828997216
Q gi|254780334|r 167 KPDLVIIDSI 176 (479)
Q Consensus 167 ~~~~vVIDSI 176 (479)
++|++|||.-
T Consensus 83 ~yD~VIIDtp 92 (231)
T pfam07015 83 GFDYALADTH 92 (231)
T ss_pred CCCEEEECCC
T ss_conf 9998998399
No 225
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.67 E-value=0.0011 Score=46.54 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=62.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCC
Q ss_conf 78708999549875188999999999850398199998646304788887520157751000034788999999973169
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEK 167 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~ 167 (479)
.++..+.|.|++|+|||.|+..++......+.++.|++.++... ...++++. + ..
T Consensus 43 ~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~----------------------~~~~~l~~-l--~~ 97 (235)
T PRK08084 43 EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAW----------------------FVPEVLEG-M--EQ 97 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHH----------------------HHHHHHHH-H--HH
T ss_conf 89876999899998889999999999970798579987798665----------------------17999987-6--41
Q ss_pred CCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEEEE
Q ss_conf 828997216876654204455636799999999999753079-789998630
Q gi|254780334|r 168 PDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG-VAMVLVGHV 218 (479)
Q Consensus 168 ~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~-i~vilighv 218 (479)
.++++||-||.+.... .-.+....|...+.+.+ ..+++.+..
T Consensus 98 ~dll~iDDi~~i~g~~---------~~ee~lF~l~N~~~~~g~~~ll~ts~~ 140 (235)
T PRK08084 98 LSLVCIDNIECIAGDE---------LWEMAIFDLYNRILESGKTRLLITGDR 140 (235)
T ss_pred CCEEEEECHHHHCCCH---------HHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 8989982745546997---------899999999999998489669996798
No 226
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.0015 Score=45.37 Aligned_cols=137 Identities=17% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC---CHHH--HHHHHHHCCCCCCCHHEECC--------
Q ss_conf 8578708999549875188999999999850398199998646---3047--88887520157751000034--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE---AIGQ--IRLRAQRLNTINSSVYIAIE-------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE---s~~Q--i~~Ra~Rl~~~~~~i~~~~e-------- 152 (479)
=+.+|.++-|.|+.|+|||||+.-++.-..-..+. +++.++. +... +...-.+++....+..++..
T Consensus 20 ~i~~g~i~~l~GpsGaGKTTLl~~iaGl~~p~~G~-I~~~g~~~~~~~~~~~l~~~~r~ig~vfQ~~~LfphltV~~Nl~ 98 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINLISGLTRPQKGR-IVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR 98 (352)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECCCCCCCCCCCHHHCCEEEEECCCCCCCCCCHHHHHH
T ss_conf 98899899999999962999999997689999659-99999998555410137676688689935763377768899665
Q ss_pred -----------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf -----------------788999-----------------9999731698289972168766542044556367999999
Q gi|254780334|r 153 -----------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSV 198 (479)
Q Consensus 153 -----------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~ 198 (479)
..++++ ++..+ -.+|++++.|=-- +.+| ...-++..
T Consensus 99 ~g~~~~~~~~~~~~~~~l~l~~l~~r~p~~LSGGq~QRvaiARAL-~~~P~lLllDEP~----s~LD-----~~~~~~i~ 168 (352)
T PRK11144 99 YGMAKSMPAQFDKIVSLLGIEPLLDRYPGSLSGGEKQRVAIGRAL-LTAPELLLMDEPL----ASLD-----LPRKRELL 168 (352)
T ss_pred HHCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCHHHHHHHHHHH-HCCCCEEEECCCC----CCCC-----HHHHHHHH
T ss_conf 100056599999999775995676278646592452349999987-2499999987840----0279-----77999999
Q ss_pred HHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999975307978999863036654331145787753027851
Q gi|254780334|r 199 QAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 199 ~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..|.++.++.++++++|-|-- .....+.|.++.++
T Consensus 169 ~~l~~l~~~~~~til~VTHd~--------~e~~~laD~v~vm~ 203 (352)
T PRK11144 169 PYLERLAQEINIPILYVSHSL--------DEILRLADHVVVLE 203 (352)
T ss_pred HHHHHHHHHHCCEEEEEECCH--------HHHHHHCCEEEEEE
T ss_conf 999999997398899993999--------99998699999998
No 227
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.0008 Score=47.42 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=74.4
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC------CCHHHHHHHHHHCCCCCC--CHH
Q ss_conf 248888659857870899954987518899999999985039819999864------630478888752015775--100
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE------EAIGQIRLRAQRLNTINS--SVY 148 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E------Es~~Qi~~Ra~Rl~~~~~--~i~ 148 (479)
..||.+ .=-+.+|..+.|.|+-|+|||||+..+..-+.-..+.+++ .+. .....++....++|.... +..
T Consensus 25 ~AL~~v-sl~i~~Ge~~aIiG~nGsGKSTL~~~l~Gll~p~~G~v~~-~~~~i~~~~~~~~~~~~~r~~vG~vfQ~P~~q 102 (289)
T PRK13645 25 KALNNT-SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV-GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred EEEECC-EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE-CCEECCCCCCCHHHHHHHHCCEEEEEECCCCC
T ss_conf 586532-8898899899999999957999999996598899985999-99983476531557899763679996677646
Q ss_pred EECCC------------------------------CH-HH-----------------HHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 00347------------------------------88-99-----------------99999731698289972168766
Q gi|254780334|r 149 IAIET------------------------------NV-ED-----------------IIATLITNEKPDLVIIDSIQTLW 180 (479)
Q Consensus 149 ~~~e~------------------------------~l-~~-----------------il~~~i~~~~~~~vVIDSIQtl~ 180 (479)
++..+ .+ ++ .++. +-..+|++++.|=-.+-
T Consensus 103 lf~~tV~~~iafg~~n~g~~~~e~~~rv~~~l~~v~L~~~~~~~~p~~LSGGqkqRVaiA~-aLa~~P~iLilDEPTag- 180 (289)
T PRK13645 103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG-IIAMDGNTLVLDEPTGG- 180 (289)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCCC-
T ss_conf 2663799999867987699999999999999987699866741890109999999999999-99639999999588764-
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 5420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 181 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 181 ~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+| +..-+++...|.++.++.+.++++|-|- -..+..+.|-|+.+.
T Consensus 181 ---LD-----p~~~~~i~~ll~~L~~~~g~Tvi~vtHd--------m~~v~~~aDrviVm~ 225 (289)
T PRK13645 181 ---LD-----PKGEEDFINLFERLNKEYKKRIIMVTHN--------MDQVLRIADEVIVMH 225 (289)
T ss_pred ---CC-----HHHHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf ---89-----8999999999999999569999999159--------999999799999998
No 228
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.65 E-value=0.0014 Score=45.58 Aligned_cols=121 Identities=26% Similarity=0.298 Sum_probs=78.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCE
Q ss_conf 08999549875188999999999850398199998646304788887520157751000034788999999973169828
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDL 170 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~ 170 (479)
.++=|+|.||+|||||.-.+...+..+|++|..++-.-|.. . . .-.-+-|-+.+..-...|.
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp-~------T----------GGsiLGDRiRM~~~~~~~~- 113 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP-F------T----------GGSILGDRIRMQRLAVDPG- 113 (323)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-C------C----------CCCCCCCHHHHHHHCCCCC-
T ss_conf 37873179988668899999999997796789999889999-8------7----------8530120766776446998-
Q ss_pred EEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 171 VIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 171 vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
++|-|+ +..|+..-+...+...+.+++-.+.-++||--| |.=.+--.+.+|+|+++++-
T Consensus 114 vFiRs~---------~srG~lGGlS~at~~~i~~ldAaG~DvIIVETV---GvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 114 VFIRSS---------PSRGTLGGLSRATREAIKLLDAAGYDVIIVETV---GVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred EEEEEC---------CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC---CCCCCHHHHHHHCCEEEEEE
T ss_conf 178426---------877651016688999999998618988999814---78841557765216689996
No 229
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.65 E-value=0.00087 Score=47.19 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=29.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 985787089995498751889999999998503981999986
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
==+.+|+.+-+.|+.|+|||||+--++.-..-..+. +++.+
T Consensus 363 l~I~~G~~vaiVG~SGsGKSTL~~LL~gly~p~~G~-I~idg 403 (581)
T PRK11176 363 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE-ILLDG 403 (581)
T ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCE-EEECC
T ss_conf 357999443122899986789999998536678874-87898
No 230
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.00088 Score=47.14 Aligned_cols=135 Identities=18% Similarity=0.287 Sum_probs=72.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECC-------------
Q ss_conf 8578708999549875188999999999850398199998646304788887520157751000034-------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIE------------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e------------- 152 (479)
=+.+|.++-|.|+.|+|||||+--++ .+.+...--+++.+++-.. +...-.+++....+.-++..
T Consensus 22 ~v~~Ge~~~iiGpSGsGKSTllr~i~-Gl~~p~~G~I~~~g~~v~~-~~~~~r~ig~VfQ~~~Lfp~ltV~~Nva~~l~~ 99 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIA-GFETPTSGEILLDGKDITN-LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL 99 (232)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCEECCC-CCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 88799899999999983999999997-7999985399999999999-995457756991488547789199998779987
Q ss_pred ------------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH-HH
Q ss_conf ------------------788999-----------------999973169828997216876654204455636799-99
Q gi|254780334|r 153 ------------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV-RT 196 (479)
Q Consensus 153 ------------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv-re 196 (479)
..+++. ++..+ -.+|++++.|=--+ .+| .+. ++
T Consensus 100 ~~~~~~e~~~rv~e~l~~v~l~~~~~~~p~~LSGGqkQRVaiARAl-~~~P~llllDEP~s----~LD------~~~~~~ 168 (232)
T cd03300 100 KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL-VNEPKVLLLDEPLG----ALD------LKLRKD 168 (232)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCCC----CCC------HHHHHH
T ss_conf 6999999999999998758977876199666998999999999998-65999999808876----469------999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
....|.++.++.++++++|-|- +.....+.|.++.+.
T Consensus 169 i~~~l~~l~~~~~~T~i~VTHd--------~~ea~~ladri~vm~ 205 (232)
T cd03300 169 MQLELKRLQKELGITFVFVTHD--------QEEALTMSDRIAVMN 205 (232)
T ss_pred HHHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 9999999999859999999999--------999999699999998
No 231
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.65 E-value=0.0032 Score=43.01 Aligned_cols=136 Identities=24% Similarity=0.326 Sum_probs=71.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC---HHHHHHHHHHCCCCCCCHHEECC-CCHHHH---
Q ss_conf 85787089995498751889999999998503981999986463---04788887520157751000034-788999---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA---IGQIRLRAQRLNTINSSVYIAIE-TNVEDI--- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs---~~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~i--- 158 (479)
=+.+|.++-|.|+-|+|||||+--++.-..-..+. +++.+.+- ....+....+++....+..++.. +-.+++
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~~~~G~-i~~~G~~i~~~~~~~~~~r~~ig~v~Q~~~l~~~ltv~eni~~~ 101 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD-LIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG 101 (240)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHH
T ss_conf 98799899999999980999999996389999974-87899987887665899875242880112247887799999878
Q ss_pred ---------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ---------------------------------------------99997316982899721687665420445563679
Q gi|254780334|r 159 ---------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 159 ---------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
++.. --.+|++++.|=..+- +| +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSGGq~QRvaiAra-L~~~P~lLllDEPt~~----LD-----~~~ 171 (240)
T PRK09493 102 PLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA-LAVKPKLMLFDEPTSA----LD-----PEL 171 (240)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCCC----CC-----HHH
T ss_conf 9997599878999999999997699246629877289999999999987-7359999999088766----89-----999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+++...|..++++ ++++++|-| -...+..+.|.++.++
T Consensus 172 ~~~i~~ll~~l~~~-g~tvi~vtH--------dl~~~~~~adri~vl~ 210 (240)
T PRK09493 172 RHEVLKVMQDLAEE-GMTMVIVTH--------EIGFAEKVASRLIFID 210 (240)
T ss_pred HHHHHHHHHHHHHC-CCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 99999999999976-998999947--------9999999699999998
No 232
>PRK08727 hypothetical protein; Validated
Probab=97.65 E-value=0.0006 Score=48.34 Aligned_cols=96 Identities=18% Similarity=0.350 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
.+..+.|.|++|+|||.|+..++......|..+.|++.++..... .++++. . ...
T Consensus 40 ~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~~~----------------------~~~l~~-l--e~~ 94 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAGRL----------------------RDALEA-L--EGR 94 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH----------------------HHHHHH-H--CCC
T ss_conf 889899989999988999999999998279972884478853202----------------------567753-1--038
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 28997216876654204455636799999999999753079789998630
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighv 218 (479)
++++||-|+.+.... +-.+....|.+.+++.+..+++.+..
T Consensus 95 ~ll~iDDid~i~g~~---------~~e~aLFhL~N~~~~~~~~ll~ts~~ 135 (233)
T PRK08727 95 SLVALDGVDSIAGQR---------EDEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred CEEEEECCHHCCCCH---------HHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 978985501126982---------79999999999998619838997798
No 233
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00042 Score=49.44 Aligned_cols=111 Identities=24% Similarity=0.379 Sum_probs=59.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEE-EEECCCCHHHHHHHHHHCC-----CCCCC-H--------------HEE
Q ss_conf 8999549875188999999999850398199-9986463047888875201-----57751-0--------------000
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRIT-YVSGEEAIGQIRLRAQRLN-----TINSS-V--------------YIA 150 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vl-YvS~EEs~~Qi~~Ra~Rl~-----~~~~~-i--------------~~~ 150 (479)
-+.++|+||+|||||++.++..+...|.+|- |++-|-. . --.|.| +.+.. - |..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR-~----gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR-E----GGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEE-C----CCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEE
T ss_conf 999867998458999999999998559665139831142-0----88275159998147955798884788762104786
Q ss_pred CCCCHHHHHHHHHHC--CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 347889999999731--698289972168766542044556367999999999997530797899986303
Q gi|254780334|r 151 IETNVEDIIATLITN--EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVT 219 (479)
Q Consensus 151 ~e~~l~~il~~~i~~--~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvT 219 (479)
...+++.+....++. ...|++|||-|--|-.- + +..-..+. -.-+.+-+++.+=|-+
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElk---s--------~~f~~~ve-~vl~~~kpliatlHrr 140 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVIIIDEIGPMELK---S--------KKFREAVE-EVLKSGKPLIATLHRR 140 (179)
T ss_pred EHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC---C--------HHHHHHHH-HHHCCCCCEEEEEECC
T ss_conf 2788899868999988634998999433633020---0--------88999999-9965899379999625
No 234
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.64 E-value=0.0011 Score=46.45 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 85787089995498751889999999998503981999986
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
-+.||..+-|.|+.|+|||||+.-++.-. ...++ +++.+
T Consensus 372 ~i~~Ge~vaIVG~SGsGKSTl~~LL~g~~-p~~G~-I~i~g 410 (588)
T PRK11174 372 TLPAGQRVALVGPSGAGKTSLLNALLGFL-PYQGS-LKING 410 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHC-CCCCE-EEECC
T ss_conf 97499789998999864999999998728-98838-99999
No 235
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.64 E-value=0.0025 Score=43.78 Aligned_cols=159 Identities=15% Similarity=0.253 Sum_probs=83.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHCCCCCCCHHE---------------
Q ss_conf 85787089995498751889999999998503981999986463-04788887520157751000---------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLRAQRLNTINSSVYI--------------- 149 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~Ra~Rl~~~~~~i~~--------------- 149 (479)
-+.+|.++-|.|+-|+|||||+--++..+.-..+ -+++.+++- ....+.++.+++....+..+
T Consensus 24 ~I~~GEi~gLIGPNGAGKSTLLk~I~Gll~P~~G-~V~l~G~~i~~~~~~elar~ia~vpQ~~~l~~~~tv~e~V~~Gr~ 102 (409)
T PRK09536 24 SVREGHLVGVVGPNGAGKTTLLRAMNGLITPTAG-TVLVAGDDVHALSAAAASRQVATVPQDTSLSFEFDVRQVVEMGRT 102 (409)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCCHHHHHHHHEEECCCCCCCCCCCHHHHHHHCCH
T ss_conf 9889989999999872799999999668888963-999999998879989996233484333466778779999982502
Q ss_pred --------------------ECCCCHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf --------------------03478899-----------------99999731698289972168766542044556367
Q gi|254780334|r 150 --------------------AIETNVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 150 --------------------~~e~~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
+...++++ .++..+ -.+|++++.|=-. ..+| +.
T Consensus 103 p~~~~~~~~~~~d~~~v~~aLe~~~l~~l~dr~~~~LSGGqrQRV~IARAL-aq~P~ILLLDEPT----s~LD-----i~ 172 (409)
T PRK09536 103 PHRSRFGTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARAL-AQATPVLLLDEPT----ASLD-----IN 172 (409)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCC-----HH
T ss_conf 333203675789999999999874997685588002899999999999999-6799989995876----6799-----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEE
Q ss_conf 99999999999753079789998630366543311457877530278515556665442156763202567651279985
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEM 272 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m 272 (479)
.-.+....|.+++++ +.+++++-|- ......+.|-|+.+.. . |++ .+|+..|+ |
T Consensus 173 ~q~ell~lLr~L~~~-G~TVI~vtHD--------L~lA~~~cDrVivl~~-----G---rIv-----a~GtPeEV----l 226 (409)
T PRK09536 173 HQIRTLELVRDLADD-GKTVVAAIHD--------LNLAARYCDELVLLAD-----G---RVH-----DAGRPASV----L 226 (409)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEECC--------HHHHHHHCCEEEEEEC-----C---EEE-----EEECCHHH----C
T ss_conf 999999999999858-9999999568--------9999986999999989-----9---899-----87187597----5
Q ss_pred CCCCCEEEC
Q ss_conf 156631101
Q gi|254780334|r 273 SDKGLQEVS 281 (479)
Q Consensus 273 ~~~Gl~~v~ 281 (479)
+++-+..|-
T Consensus 227 t~e~l~~vy 235 (409)
T PRK09536 227 TPDTLRAAF 235 (409)
T ss_pred CHHHHHHHH
T ss_conf 988999982
No 236
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.0017 Score=45.09 Aligned_cols=136 Identities=15% Similarity=0.226 Sum_probs=74.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------ 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------ 153 (479)
-+.+|+++-|.|+-|+|||||+--++. +-+...--+|+.+++- .....+..+++....+..++...
T Consensus 22 ~i~~Gei~~iiGpnGaGKSTl~~~i~G-l~~p~~G~I~~~g~~i-~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAG-LERPDSGEILIDGRDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKL 99 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEEC-CCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 988998999999999739999999975-9998970899999998-88997787869990698658898199999889987
Q ss_pred -------------------CHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -------------------8899-----------------9999973169828997216876654204455636799999
Q gi|254780334|r 154 -------------------NVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 154 -------------------~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
++++ .++.. -..+|++++.|=-. ..+| +...+++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~kQrv~iAra-L~~~P~illlDEPt----~gLD-----~~~~~~i 169 (213)
T cd03259 100 RGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARA-LAREPSLLLLDEPL----SALD-----AKLREEL 169 (213)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCCEEEECCCC----CCCC-----HHHHHHH
T ss_conf 599989999999999998699647637703389899999999876-22799999983986----4379-----9999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...|.+++++.+++++++-|- ...+..+.|.++.+.
T Consensus 170 ~~li~~l~~~~g~tii~vtHd--------l~~~~~~~dri~vm~ 205 (213)
T cd03259 170 REELKELQRELGITTIYVTHD--------QEEALALADRIAVMN 205 (213)
T ss_pred HHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 999999999629999999689--------999999699999998
No 237
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=0.0023 Score=44.13 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=29.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 85787089995498751889999999998503981999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITY 123 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY 123 (479)
=+.+|.++-|.|+-|+|||||+..+..-+.-..+.+.|
T Consensus 29 ~I~~GE~v~IiG~nGsGKSTL~k~l~Gll~P~~G~V~~ 66 (304)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66 (304)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 98599899998799985999999996699988716999
No 238
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.64 E-value=0.00078 Score=47.50 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=55.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHHCCCCCCCHHEECCCC---HHHHHHHHHHCC
Q ss_conf 8999549875188999999999850398199998646--30478888752015775100003478---899999997316
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE--AIGQIRLRAQRLNTINSSVYIAIETN---VEDIIATLITNE 166 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE--s~~Qi~~Ra~Rl~~~~~~i~~~~e~~---l~~il~~~i~~~ 166 (479)
++....-=|+||||+++.++..++.+|.+|+.+..+. |..++..++.|-+.......+....+ ++...+. .+..
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~-~~~~ 82 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYED-AELQ 82 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH-HHHC
T ss_conf 999618998769999999999999789959999689986889999876525898877523405652578999988-7536
Q ss_pred CCCEEEECHH
Q ss_conf 9828997216
Q gi|254780334|r 167 KPDLVIIDSI 176 (479)
Q Consensus 167 ~~~~vVIDSI 176 (479)
++|++|||.-
T Consensus 83 ~~D~VIIDtp 92 (231)
T PRK13849 83 GFDYALADTH 92 (231)
T ss_pred CCCEEEECCC
T ss_conf 9988998189
No 239
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.63 E-value=0.0044 Score=42.05 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=71.4
Q ss_pred CHHHHHHHCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHH
Q ss_conf 12488886598---578708999549875188999999999850398199998646----30478888752015775100
Q gi|254780334|r 76 IDELDRVTGGG---FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVY 148 (479)
Q Consensus 76 i~eLDrvLGGG---l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~ 148 (479)
..||=.+||+. ..+-+++++.|--|+||||-+-.+|..+.++|.+++.+++.- ..+|++..+++++++.- -
T Consensus 80 ~~eL~~llg~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~--~ 157 (433)
T PRK00771 80 YEELVKLLGEEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY--G 157 (433)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC--C
T ss_conf 99999984967656689858999737889789999999999997799467850678836899999999986388731--7
Q ss_pred EECCCCHHHHHHHHHH-CCCCCEEEECHH
Q ss_conf 0034788999999973-169828997216
Q gi|254780334|r 149 IAIETNVEDIIATLIT-NEKPDLVIIDSI 176 (479)
Q Consensus 149 ~~~e~~l~~il~~~i~-~~~~~~vVIDSI 176 (479)
...+.+..++....++ ..+.|+++||.-
T Consensus 158 ~~~~~dp~~i~~~a~~~~k~~DvviiDTA 186 (433)
T PRK00771 158 DPKEKDAVKIVKEGLEKLKKVDVIIVDTA 186 (433)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 88999999999999998456988999776
No 240
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.0024 Score=43.94 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=73.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC------------HHE----
Q ss_conf 8578708999549875188999999999850398199998646304788887520157751------------000----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS------------VYI---- 149 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~------------i~~---- 149 (479)
-+.+|.++-+-|+-|+||||+.-.++.-+....+. +++.|++-......--.++|...+. +.+
T Consensus 27 ~V~~Gei~gllGpNGAGKTTli~~l~Gl~~p~sG~-v~i~G~~i~~~~~~~r~~iG~~pq~~~l~~~ltv~e~l~~~~~~ 105 (304)
T PRK13537 27 HVQPGECFGLLGPNGAGKTTTLKMLLGLTHPDAGT-ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 105 (304)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 88699599999998972999999997795689768-99999988756288873559991776568898999999999997
Q ss_pred ---------------ECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ---------------034788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 150 ---------------AIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 150 ---------------~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
+...++++. +... --.+|++++.|=.. ..+| | +.|..
T Consensus 106 ~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~ia~a-l~~~P~lliLDEPT----~GLD--p----~~r~~ 174 (304)
T PRK13537 106 FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA-LVNDPDVLVLDEPT----TGLD--P----QARHL 174 (304)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC--H----HHHHH
T ss_conf 299999999999999997799568567366799999999999999-83799999993886----6789--9----99999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...+++-.++.+.+++++-|.-.+ .|.+.|.|.-+.
T Consensus 175 i~~~i~~l~~~G~TillttH~l~E--------~e~lcDrv~ii~ 210 (304)
T PRK13537 175 MWERLRSLLARGKTILLTTHFMEE--------AERLCDRLCVIE 210 (304)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf 999999999689999998884899--------998699999998
No 241
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=97.63 E-value=0.00055 Score=48.64 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=44.2
Q ss_pred HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf 88659857870899954987518899999999985039819999864630478888
Q gi|254780334|r 81 RVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLR 136 (479)
Q Consensus 81 rvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~R 136 (479)
|.++.| +-.+.+.+..||.||||++..+|..+++.|.|||.|.+.--...+...
T Consensus 97 ~~~~~~--~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLRrP~lh~~ 150 (274)
T TIGR03029 97 RWFSEG--RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRN 150 (274)
T ss_pred HHCCCC--CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 845788--838999689999989999999999999679919999588888447797
No 242
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.002 Score=44.54 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 985787089995498751889999999998503981999
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITY 123 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY 123 (479)
=-+.+|.++-|.|+-|+|||||+..++.-+.-..+.+.+
T Consensus 27 l~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~~ 65 (288)
T PRK13643 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV 65 (288)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 798599899999999947999999997488888856999
No 243
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.63 E-value=0.0033 Score=42.94 Aligned_cols=136 Identities=18% Similarity=0.300 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECCCC-HHHH
Q ss_conf 98578708999549875188999999999850398199998646----30478-888752015775100003478-8999
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIETN-VEDI 158 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~~-l~~i 158 (479)
=-+.+|.++-|.|+-|+|||||+- +...+-+...-.+++.|.+ +..++ +.|.++++....+..++.... .+++
T Consensus 29 l~i~~Ge~v~i~G~nGsGKSTll~-~l~gl~~p~~G~v~~~G~~~~~~~~~~~~~~rr~~ig~v~Q~~~l~~~~tv~env 107 (648)
T PRK10535 29 LTIYAGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV 107 (648)
T ss_pred EEECCCCEEEEECCCCCHHHHHHH-HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 999899899999999962999999-9956999996699999999885998999998658689986797437999599999
Q ss_pred -----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf -----------------------------------------------999973169828997216876654204455636
Q gi|254780334|r 159 -----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 159 -----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
++..+ -.+|++++.|=-. ..+|.
T Consensus 108 ~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~p~~LSgGq~QRvaiAral-~~~p~vlllDEPT----~~LD~----- 177 (648)
T PRK10535 108 EVPAVYAGLERKQRLERAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL-MNGGQVILADEPT----GALDS----- 177 (648)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HHCCCEEEECCCC----CCCCH-----
T ss_conf 9899877999899999999999977996675578233899999999999999-7289899956885----55799-----
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 79999999999975307978999863036654331145787753027851
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
..-+++...|.++ ++.+.++++|-| .+.+.+| .|-++.++
T Consensus 178 ~~~~~v~~ll~~l-~~~G~tii~vtH--------d~~~a~~-a~Rii~~~ 217 (648)
T PRK10535 178 HSGEEVMAILHQL-RDRGHTVIIVTH--------DPQVAAQ-AERVIEIR 217 (648)
T ss_pred HHHHHHHHHHHHH-HHCCCEEEEECC--------CHHHHHH-CCEEEEEE
T ss_conf 9999999999999-977999999764--------8699964-99799995
No 244
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.0011 Score=46.49 Aligned_cols=138 Identities=18% Similarity=0.224 Sum_probs=73.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH---------------------H-HHHH--------
Q ss_conf 857870899954987518899999999985039819999864630---------------------4-7888--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI---------------------G-QIRL-------- 135 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~---------------------~-Qi~~-------- 135 (479)
-+.+|.++-|.|+.|+|||||+--++.-..-..+. +++.+++-. . .+..
T Consensus 26 ~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~-I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~~~l~~~~~~ 104 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE-VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVP 104 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 98799899999999957999999997599988738-99999967888988799924885377887999998899865999
Q ss_pred ------H----HHHCCCCCCCHHEECCCCHHH----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ------8----752015775100003478899----99999731698289972168766542044556367999999999
Q gi|254780334|r 136 ------R----AQRLNTINSSVYIAIETNVED----IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 136 ------R----a~Rl~~~~~~i~~~~e~~l~~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L 201 (479)
| .+++++..-.-....+.+=.+ .++..+ -.+|++++.|=.. +.+|. .--+++...|
T Consensus 105 ~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL-~~~P~llllDEPt----s~LD~-----~~~~~i~~~l 174 (220)
T cd03293 105 KAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL-AVDPDVLLLDEPF----SALDA-----LTREQLQEEL 174 (220)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCCH-----HHHHHHHHHH
T ss_conf 899999999999987895476189312999999999999998-6699999980887----65699-----9999999999
Q ss_pred HHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 99753079789998630366543311457877530278515
Q gi|254780334|r 202 IQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 202 ~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
.++.++.++++++|-|- .....++.|.++.++.
T Consensus 175 ~~l~~~~g~tii~vTHd--------l~~a~~laDri~vm~~ 207 (220)
T cd03293 175 LDIWRETGKTVLLVTHD--------IDEAVFLADRVVVLSA 207 (220)
T ss_pred HHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEEC
T ss_conf 99998519999998888--------9999996999999858
No 245
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00041 Score=49.59 Aligned_cols=136 Identities=20% Similarity=0.323 Sum_probs=74.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH--HHHHHHHHCCCCCCC--HHEECC---------
Q ss_conf 8578708999549875188999999999850398199998646304--788887520157751--000034---------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG--QIRLRAQRLNTINSS--VYIAIE--------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~--Qi~~Ra~Rl~~~~~~--i~~~~e--------- 152 (479)
-+.+|..+.|.|+-|+|||||+..++.-+.-..+. +++.+.+... .......+.|....+ ..++..
T Consensus 33 ~i~~GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G~-I~i~G~~~~~~~~~~~~r~~ig~vfQ~P~~~l~~~tV~e~i~fg 111 (281)
T PRK13633 33 EVKKGEFLVILGHNGSGKSTIAKHMNALLLPSEGK-VYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG 111 (281)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEECCCHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 88799899999999984999999997588788856-99999987885669998736089866886420288999999988
Q ss_pred ---------------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf ---------------------788999-----------------999973169828997216876654204455636799
Q gi|254780334|r 153 ---------------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 153 ---------------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
.++++. ++. +--.+|++++.|=-.+...+ ..-
T Consensus 112 ~~~~g~~~~e~~~rv~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA~-aLa~~P~iLilDEPTs~LDp---------~~~ 181 (281)
T PRK13633 112 PENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAG-ILAMRPECIIFDEPTAMLDP---------SGR 181 (281)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHH-HHHCCCCEEEEECCCCCCCH---------HHH
T ss_conf 98869999999999999998679487663891008985999999999-99859999998187343898---------999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999999975307978999863036654331145787753027851
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+++...|.++.++.++++++|-|-- ....+ .|-|+.++
T Consensus 182 ~~i~~~l~~l~~e~g~Tii~vTHdl--------~~~~~-aDrv~vm~ 219 (281)
T PRK13633 182 REVVNTIKELNKKYGITIILITHYM--------EEAVE-ADRIIVMD 219 (281)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCH--------HHHHC-CCEEEEEE
T ss_conf 9999999999984098999986788--------99973-99899998
No 246
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.62 E-value=0.0031 Score=43.16 Aligned_cols=136 Identities=16% Similarity=0.286 Sum_probs=71.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHHH-CCCCCCCHHEECCCC---------
Q ss_conf 85787089995498751889999999998503981999986463047-8888752-015775100003478---------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ-IRLRAQR-LNTINSSVYIAIETN--------- 154 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q-i~~Ra~R-l~~~~~~i~~~~e~~--------- 154 (479)
-+.+|.++-+.|+-|+|||||+-.++.-.....+. +|+.+.+-... ...|+.. ++.......++....
T Consensus 22 ~v~~Gei~~llGpNGAGKSTll~~i~Gl~~p~~G~-I~~~g~di~~~~~~~r~r~gig~~pQ~~~l~~~ltV~enl~~~~ 100 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 98999599999999961999999997799998629-99999999999999999719798777776788888999999999
Q ss_pred -------------HHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf -------------8999--------------------------9999731698289972168766542044556367999
Q gi|254780334|r 155 -------------VEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 155 -------------l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
.+.+ ++..+ -.+|++++.|=-. ..+| |.. .+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~iAraL-~~~P~illlDEPt----~GLD--p~~---~~ 170 (232)
T cd03218 101 EIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL-ATNPKFLLLDEPF----AGVD--PIA---VQ 170 (232)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC--HHH---HH
T ss_conf 972999999999999999876982465394255999999999999999-6699999988985----6889--999---99
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999975307978999863036654331145787753027851
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+....+.++ ++.+++++++-|-- ..++.+.|.+..+.
T Consensus 171 ~i~~~i~~l-~~~g~tili~tH~l--------~~~~~~~drv~vl~ 207 (232)
T cd03218 171 DIQKIIKIL-KDRGIGVLITDHNV--------RETLSITDRAYIIY 207 (232)
T ss_pred HHHHHHHHH-HHCCCEEEEEECCH--------HHHHHHCCEEEEEE
T ss_conf 999999999-95899999992839--------99998699999997
No 247
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.61 E-value=0.0012 Score=46.21 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=73.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHH-HHHHCCCCCCC---HHEECCCC-HHH--
Q ss_conf 857870899954987518899999999985039819999864630-47888-87520157751---00003478-899--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-GQIRL-RAQRLNTINSS---VYIAIETN-VED-- 157 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-~Qi~~-Ra~Rl~~~~~~---i~~~~e~~-l~~-- 157 (479)
-+.+|.++-|.|+-|+|||||+--++.......+++. +.+++-. ..... +...++...++ ..++.... .++
T Consensus 22 ~v~~GEi~~liG~nGaGKSTll~~l~G~~~p~~G~I~-~~G~~~~~~~~~~~~~~~i~~vp~~r~~~~l~~~~~v~en~~ 100 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT-LDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA 100 (182)
T ss_pred EECCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEE-ECCEECCCCCHHHHHHCCEEEEEHHHHHCCCCCCCCHHHHHH
T ss_conf 9859969999888999926377876698678877599-999998864999999789699602076625678990999951
Q ss_pred -------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf -------------9999973169828997216876654204455636799999999999753079789998630366543
Q gi|254780334|r 158 -------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQI 224 (479)
Q Consensus 158 -------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~i 224 (479)
.++.. --.+|++++.|=-. ..+| +.+ .++....+.+++ +.+.+++++-|-
T Consensus 101 ~~~~LSGG~~Qrv~lAra-l~~~p~llllDEPT----~gLD--~~~---~~~i~~~i~~l~-~~g~tvi~isHd------ 163 (182)
T cd03215 101 LSSLLSGGNQQKVVLARW-LARDPRVLILDEPT----RGVD--VGA---KAEIYRLIRELA-DAGKAVLLISSE------ 163 (182)
T ss_pred CCCCCCHHHHHHHHHHHH-HHCCCCEEEECCCC----CCCC--HHH---HHHHHHHHHHHH-HCCCEEEEEECC------
T ss_conf 855799899999999999-97199999986875----4589--999---999999999999-789999999687------
Q ss_pred CCHHHHHHHHHEEEEEE
Q ss_conf 31145787753027851
Q gi|254780334|r 225 AGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 225 AGp~~LeH~VD~vl~~e 241 (479)
...++++.|.|+.++
T Consensus 164 --l~~~~~~~Drv~vl~ 178 (182)
T cd03215 164 --LDELLGLCDRILVMY 178 (182)
T ss_pred --HHHHHHHCCEEEEEC
T ss_conf --999999799999983
No 248
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.61 E-value=0.0014 Score=45.71 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=30.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|.++.|.|+-|+|||||+.-++.-.....+.+ ++.++
T Consensus 20 ~i~~Gei~~liG~nGsGKSTL~~~l~Gl~~~~~G~i-~~~g~ 60 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI-LFQGK 60 (491)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCE
T ss_conf 998996999989999819999999956988996599-99999
No 249
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.61 E-value=0.0013 Score=45.85 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 85787089995498751889999999998503981999986
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
-+.+|..+.|.|+.|+|||||+.-++.-+... +. +++.+
T Consensus 26 ~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~~~-G~-I~idg 64 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD-IQIDG 64 (275)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHCCCC-CE-EEECC
T ss_conf 98799999999999997999999996035789-53-99998
No 250
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.61 E-value=0.00058 Score=48.44 Aligned_cols=120 Identities=20% Similarity=0.267 Sum_probs=59.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 0899954987518899999999985039-----81999986463047888875201577510000347889999999731
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKK-----HRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g-----~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
+.++|.|+||+|||||+-.++...+... .-++|+..-+-...-......+ .. ..+.......+........+
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~l--l~-~~~~~~~~~~~~~~~~~~~~ 77 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADL--LF-SQWPEPAAPVSEVWAVILEL 77 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHH--HH-HHCCCCCCCHHHHHHHHHHC
T ss_conf 9899982798989999999999998698436972899999567077766899999--99-87677457637899999839
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC---CCEEEEEEEE
Q ss_conf 6982899721687665420445563679999999999975307---9789998630
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKN---GVAMVLVGHV 218 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~---~i~vilighv 218 (479)
.+--++++|.+--+. ...+...+.......|..+.+.+ +..++++...
T Consensus 78 ~~k~L~ilDGlDE~~-----~~~~~~~~~~~~~~~l~~ll~~~~lp~~~vliTsRp 128 (165)
T pfam05729 78 PERVLLILDGLDELA-----SDLGQLDGPLPVLTLLSSLLRKKLLPGASLLLTSRP 128 (165)
T ss_pred CCCEEEEECCHHHHC-----CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 772899964845514-----443564445779999999984152788649999680
No 251
>PRK13409 putative ATPase RIL; Provisional
Probab=97.61 E-value=0.0029 Score=43.38 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5787089995498751889999999998503
Q gi|254780334|r 87 FVRGSVILVGGDPGIGKSTLLMQTAASLAYK 117 (479)
Q Consensus 87 l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~ 117 (479)
--||.++=|.|+=|+||||++--++..+.-.
T Consensus 96 p~~G~v~GLiG~NGaGKST~lkILsG~l~Pn 126 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKSTAVKILSGELIPN 126 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 9998789988999998999999995871488
No 252
>KOG0734 consensus
Probab=97.61 E-value=0.00019 Score=51.98 Aligned_cols=76 Identities=29% Similarity=0.493 Sum_probs=49.4
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHE-ECCCCHHHHHHH
Q ss_conf 6598578708999549875188999999999850398199998646304788887520157751000-034788999999
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYI-AIETNVEDIIAT 161 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~-~~e~~l~~il~~ 161 (479)
|||-+++| +|+.|+||+|||-|+-.+|.. .|-+..|.||-|-.+- |+ .....+.++...
T Consensus 332 LGGKLPKG--VLLvGPPGTGKTlLARAvAGE---A~VPFF~~sGSEFdEm---------------~VGvGArRVRdLF~a 391 (752)
T KOG0734 332 LGGKLPKG--VLLVGPPGTGKTLLARAVAGE---AGVPFFYASGSEFDEM---------------FVGVGARRVRDLFAA 391 (752)
T ss_pred CCCCCCCC--EEEECCCCCCHHHHHHHHHCC---CCCCEEECCCCCHHHH---------------HHCCCHHHHHHHHHH
T ss_conf 14758885--387689997556999986055---6897474166204454---------------220148999999999
Q ss_pred HHHCCCCCEEEECHHHHH
Q ss_conf 973169828997216876
Q gi|254780334|r 162 LITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 162 ~i~~~~~~~vVIDSIQtl 179 (479)
.+...|-+++||-|-++
T Consensus 392 -Ak~~APcIIFIDEiDav 408 (752)
T KOG0734 392 -AKARAPCIIFIDEIDAV 408 (752)
T ss_pred -HHHCCCEEEEEECHHHH
T ss_conf -87349859997200220
No 253
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=0.002 Score=44.49 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=29.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 8578708999549875188999999999850398199
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRIT 122 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vl 122 (479)
=+.+|.++-|.|+-|+|||||+..++.-+....+.+.
T Consensus 48 ~i~~Ge~vaIIG~nGsGKSTL~~~l~Gll~p~~G~I~ 84 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84 (320)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 8859989999949998499999999758889983599
No 254
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.61 E-value=0.0026 Score=43.65 Aligned_cols=58 Identities=36% Similarity=0.314 Sum_probs=32.3
Q ss_pred CCCCEECCCC-CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6564031333-45566632378124888865985787089995498751889999999998
Q gi|254780334|r 55 SISLFMLSEE-SIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASL 114 (479)
Q Consensus 55 ~~~~~~l~~~-~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~ 114 (479)
+..+..|-+. +.+...|...+--.|=++ ==..+|.++=|-|+-|+||||-+-=++..+
T Consensus 66 AI~IvnLP~eLe~e~vHRYg~NgFkL~~L--P~pr~G~V~GilG~NGiGKsTalkILaGel 124 (591)
T COG1245 66 AISIVNLPEELEEEVVHRYGVNGFKLYRL--PTPRPGKVVGILGPNGIGKSTALKILAGEL 124 (591)
T ss_pred EEEEECCCHHHCCCCEEECCCCCEEEECC--CCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17884383464344304405774378457--878888479987689765788999974760
No 255
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.61 E-value=0.00052 Score=48.80 Aligned_cols=122 Identities=17% Similarity=0.277 Sum_probs=64.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-------CHHH-HHHHHHHCCCCCCCHHEECCCC-HH
Q ss_conf 8578708999549875188999999999850398199998646-------3047-8888752015775100003478-89
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-------AIGQ-IRLRAQRLNTINSSVYIAIETN-VE 156 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-------s~~Q-i~~Ra~Rl~~~~~~i~~~~e~~-l~ 156 (479)
=+.+|.++.|.|+.|+|||||+--++.-..-..+.+++-.++. +..+ ...|..+++....+.-+++-.. .+
T Consensus 46 ~I~~GEi~~lvGpSGsGKSTLLr~i~GL~~pt~G~I~i~~~~~~~d~~~~~~~~lr~~R~~~IgmVFQ~~aL~P~~TV~e 125 (382)
T TIGR03415 46 DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHH
T ss_conf 88799899999999734999999997599988529999268642245659989987630576699963786465681999
Q ss_pred HH-----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf 99-----------------------------------------------9999731698289972168766542044556
Q gi|254780334|r 157 DI-----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 157 ~i-----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
++ ++..+ ..+|++++.|=--+ .+|
T Consensus 126 Nia~~L~~~g~~~~e~~~rv~e~L~~VgL~~~~~~yP~eLSGGqqQRVaIARAL-a~~P~iLLmDEPfs----aLD---- 196 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF-AMDADILLMDEPFS----ALD---- 196 (382)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCCC----CCC----
T ss_conf 998999886999999999999998735984655479555798899999999998-63899899708876----559----
Q ss_pred CHHHHH-HHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 367999-99999999753079789998630
Q gi|254780334|r 190 TVIQVR-TSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 190 svsQvr-e~~~~L~~~AK~~~i~vilighv 218 (479)
..+| +.-..|.++.++.++++++|-|-
T Consensus 197 --~~~r~~l~~~l~~L~~~~~~TiifVTHD 224 (382)
T TIGR03415 197 --PLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred --HHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf --9999999999999999869989998799
No 256
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.60 E-value=0.0017 Score=45.13 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 9857870899954987518899999999985039819999864630
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI 130 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~ 130 (479)
--+.+|.++.|.|+-|+|||||+--++.-+. ...-.+++.+++..
T Consensus 23 f~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~-p~~G~I~~~g~~~~ 67 (206)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLLAGLLP-PAAGTIKLDGGIQD 67 (206)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCEEEEECCEECC
T ss_conf 8986994999989999989999999958878-88518999997766
No 257
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.59 E-value=0.002 Score=44.60 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=29.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 85787089995498751889999999998503981999986
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
-+.+|..+.|.|+.|+|||||+.-++.-.....+ -+++.+
T Consensus 26 ~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g 65 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDG 65 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECC
T ss_conf 9869989999999999899999999679718984-899999
No 258
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.59 E-value=0.0023 Score=44.10 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEEE-CCCCHH--HHHHHHHHCCCCC
Q ss_conf 663237812488886598578708999549875188999999999850-398199998-646304--7888875201577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY-KKHRITYVS-GEEAIG--QIRLRAQRLNTIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-~g~~vlYvS-~EEs~~--Qi~~Ra~Rl~~~~ 144 (479)
.+-+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.+.++ ...-++|+. ||-+.+ .+......-+...
T Consensus 119 ~e~l~TGIkaID~l~--pigrGqr~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~~IGER~rE~~e~~~el~~~g~l~ 196 (449)
T TIGR03305 119 SEVFETGIKAIDVLV--PLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLD 196 (449)
T ss_pred CCCEECCCEEHHHCC--CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCC
T ss_conf 864002844023024--524575656652799984101899998656414886899997452167999999987536654
Q ss_pred CCHHEECCCC---HH---------HHHHHHH-HCCCCCEEEECHHHH
Q ss_conf 5100003478---89---------9999997-316982899721687
Q gi|254780334|r 145 SSVYIAIETN---VE---------DIIATLI-TNEKPDLVIIDSIQT 178 (479)
Q Consensus 145 ~~i~~~~e~~---l~---------~il~~~i-~~~~~~~vVIDSIQt 178 (479)
..+.+.+..+ .. .+-+..- ++.+--++++||+..
T Consensus 197 ~tv~V~a~~depp~~R~~~~~~a~tiAEyfrd~~g~dVLl~~D~ltr 243 (449)
T TIGR03305 197 NTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 26999836989879999999987769999886179808999967689
No 259
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.0012 Score=46.11 Aligned_cols=137 Identities=16% Similarity=0.300 Sum_probs=74.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECCCC-HHHH-
Q ss_conf 8578708999549875188999999999850398199998646----30478-888752015775100003478-8999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIETN-VEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~~-l~~i- 158 (479)
-+.+|.++.|.|+.|+|||||+--++.-. +...--+++.+++ +..++ ..|..+++....+..+++... .+++
T Consensus 46 ~i~~GE~~~ivG~SGsGKSTLLr~i~GL~-~p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~~aL~P~ltV~eNV~ 124 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVA 124 (269)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 88899999999899848999999997599-99975999999999999989998852564699961575476787999986
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
++..+ -.+|++++.|=.-+ .+|. .
T Consensus 125 ~~L~~~~~~~~e~~~rv~e~L~~vgL~~~~~~~P~qLSGGq~QRVaIARAL-a~~P~iLLlDEPts----aLD~-----~ 194 (269)
T cd03294 125 FGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL-AVDPDILLMDEAFS----ALDP-----L 194 (269)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHCHHHHHHHHHHHHH-HCCCCEEEECCCCC----CCCH-----H
T ss_conf 888852899789999999999867986777569678494888899999998-63998999758754----2599-----9
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
--.+....|.++.++.++++++|-|- ......|.|.+..+.
T Consensus 195 ~~~~i~~~l~~l~~~~~~T~i~VTHD--------~~eA~~laDrI~vm~ 235 (269)
T cd03294 195 IRREMQDELLRLQAELQKTIVFITHD--------LDEALRLGDRIAIMK 235 (269)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 99999999999999749999999998--------999999799899998
No 260
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.0023 Score=44.05 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=74.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHHHCCCCCCCHHEEC-------------
Q ss_conf 85787089995498751889999999998503981999986463047-8888752015775100003-------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ-IRLRAQRLNTINSSVYIAI------------- 151 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q-i~~Ra~Rl~~~~~~i~~~~------------- 151 (479)
-+.+|.++-|.|+-|+|||||+--++.-+....+.+. +.+++-... ...| +++....+..++.
T Consensus 21 ~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~p~sG~I~-i~G~~~~~~~~~~r--~i~~v~Q~~~l~~~ltv~eni~~~~~ 97 (233)
T PRK10771 21 TVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLL-INGVDHTTTPPSRR--PVSMLFQENNLFSHLTVAQNIGLGLN 97 (233)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEE-ECCEECCCCCHHHC--CEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 9889989999999998199999999659999855999-99999887998888--87999057766889909999987862
Q ss_pred ------------------CCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf ------------------4788999-----------------99997316982899721687665420445563679999
Q gi|254780334|r 152 ------------------ETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT 196 (479)
Q Consensus 152 ------------------e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre 196 (479)
...++++ ++..+ -.+|++++.|=-. +.+| +...++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL-~~~P~vLllDEPt----s~LD-----~~~~~~ 167 (233)
T PRK10771 98 PGLKLNAAQREKLHAIARQMGIENLLARLPGELSGGQRQRVALARCL-VREQPILLLDEPF----SALD-----PALRQE 167 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCC-----HHHHHH
T ss_conf 26787688999999999877996686089455999999999999998-5599999992877----5579-----999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
....|.+++++.++++++|-|- ......+.|-++.++
T Consensus 168 i~~ll~~l~~~~~~til~vtHd--------l~~~~~~adri~vl~ 204 (233)
T PRK10771 168 MLTLVSQVCQQRQLTLLMVSHS--------VEDAARIAPRSLVVA 204 (233)
T ss_pred HHHHHHHHHHHCCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 9999999998369899999248--------999999699999998
No 261
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=97.58 E-value=0.0014 Score=45.61 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=75.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC---HHH---HHHHH-HH--CCCCCCC----------
Q ss_conf 85787089995498751889999999998503981999986463---047---88887-52--0157751----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA---IGQ---IRLRA-QR--LNTINSS---------- 146 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs---~~Q---i~~Ra-~R--l~~~~~~---------- 146 (479)
=+.+|.++-|.|+.|+|||||+--++.-+.-..+.+.|-..+.. ... ...|. .| .+....+
T Consensus 28 ~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~r~~~g~v~Q~~~~~l~~~~~ 107 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVS 107 (258)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHCCEEEEEECHHHCCCCCEE
T ss_conf 88799799998889988999999985678888873997461157677344599999988632416887255444685316
Q ss_pred --------HHEECCCC---------------------HHH-------------HHHHHHHCCCCCEEEECHHHHHHHHHH
Q ss_conf --------00003478---------------------899-------------999997316982899721687665420
Q gi|254780334|r 147 --------VYIAIETN---------------------VED-------------IIATLITNEKPDLVIIDSIQTLWSQTA 184 (479)
Q Consensus 147 --------i~~~~e~~---------------------l~~-------------il~~~i~~~~~~~vVIDSIQtl~~~~~ 184 (479)
+....... +++ .++..+ -.+|++++.|-..+ .+
T Consensus 108 ~~~~i~~~l~~~~~~~~~~~~~~a~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL-~~~P~llllDEPts----gL 182 (258)
T PRK11701 108 AGGNIGERLMAVGARHYGDIRATAGDWLERVEIDASRIDDLPTTFSGGMQQRLQIARNL-VTHPRLVFMDEPTG----GL 182 (258)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCCC----CC
T ss_conf 87887678886155346789999999998713767676506221478999999999998-64999999859865----68
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 185 ESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 185 ~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
| +..-+++...|.+++++.++++++|-|- ...++.+.|.++.+.
T Consensus 183 D-----~~~~~~i~~~l~~l~~~~g~til~vtHd--------l~~~~~laDri~vl~ 226 (258)
T PRK11701 183 D-----VSVQARLLDLLRGLVVELGLAVVIVTHD--------LAVARLLAHRLLVMK 226 (258)
T ss_pred C-----HHHHHHHHHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 9-----9999999999999999609899999378--------899999799999998
No 262
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.58 E-value=0.0075 Score=40.37 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=66.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEE-ECCCCHH--HHHHHHHHCCCCC
Q ss_conf 6632378124888865985787089995498751889999999998503-9819999-8646304--7888875201577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYV-SGEEAIG--QIRLRAQRLNTIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYv-S~EEs~~--Qi~~Ra~Rl~~~~ 144 (479)
.+-+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.++..++++. +.-++|. -||-+.+ .+.......+...
T Consensus 126 ~e~l~TGIkaID~l~--pigkGqrigIfggaGvGKTvLl~eli~n~a~~~~~v~V~a~IGER~rE~~e~~~e~~~~g~l~ 203 (466)
T PRK09280 126 TEILETGIKVIDLLA--PYAKGGKIGLFGGAGVGKTVLIMELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLD 203 (466)
T ss_pred CCCCCCCCHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 863001813222316--713774798557999980089999999999865990999971423688999999766428763
Q ss_pred CCHHEECCCC---HH---------HHHHHHHH-CCCCCEEEECHHHH
Q ss_conf 5100003478---89---------99999973-16982899721687
Q gi|254780334|r 145 SSVYIAIETN---VE---------DIIATLIT-NEKPDLVIIDSIQT 178 (479)
Q Consensus 145 ~~i~~~~e~~---l~---------~il~~~i~-~~~~~~vVIDSIQt 178 (479)
....++...+ .. .+-+..-+ +.+.-++++||+-.
T Consensus 204 ~tvlV~~~~depp~~R~~~~~~a~tiAEyFRD~~g~dVLl~~D~ltR 250 (466)
T PRK09280 204 KTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFR 250 (466)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 48999965889968999999999999999886179828999726689
No 263
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.58 E-value=0.00046 Score=49.19 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=82.8
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH---HCCCCCCCHHEECCCCH
Q ss_conf 888865985787089995498751889999999998503981999986463047888875---20157751000034788
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ---RLNTINSSVYIAIETNV 155 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~---Rl~~~~~~i~~~~e~~l 155 (479)
.-..|---+..+..++|+|++|+|||||+-.++..+... .+++ +.|++.+- ..+.. ++.....+..-..+.++
T Consensus 14 ~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~-~riv--tiEd~~El-~l~~~~~v~l~~~~~~~~~~~~~~~ 89 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERII--TIEDTAEL-QLPHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CCEE--EECCCHHH-CCCCCCEEEEEEECCCCCCCCEECH
T ss_conf 999999999859989998999998999999999613345-6459--84153540-4777756888860464578650349
Q ss_pred HHHHHHHHHCCCCCEEEECHHHH-----HHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
Q ss_conf 99999997316982899721687-----665420445563679-----99999999997530797899986303665433
Q gi|254780334|r 156 EDIIATLITNEKPDLVIIDSIQT-----LWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIA 225 (479)
Q Consensus 156 ~~il~~~i~~~~~~~vVIDSIQt-----l~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iA 225 (479)
.++++... ..+||.+++.-+.. ++..-..+.+|+++- .++...+|..+++..+.+ .+ +
T Consensus 90 ~~li~~aL-R~~pd~iivGEiR~~Ea~~~l~a~~tGh~g~ltTiHa~s~~~ai~Rl~~l~~~~~~~--------~~---~ 157 (186)
T cd01130 90 ADLLRSAL-RMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPLG--------RP---L 157 (186)
T ss_pred HHHHHHHC-CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--------HH---H
T ss_conf 99988736-689973731756839999999999748986030315899999999999887547999--------99---9
Q ss_pred CHHHHHHHHHEEEEEEC
Q ss_conf 11457877530278515
Q gi|254780334|r 226 GPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 226 Gp~~LeH~VD~vl~~eg 242 (479)
-.+.+-+.+|.|+|++-
T Consensus 158 ~~~~ia~~id~vV~~~~ 174 (186)
T cd01130 158 LREQIKEAIDVIVHIAR 174 (186)
T ss_pred HHHHHHHHCCEEEEEEE
T ss_conf 99999975779999988
No 264
>PRK13695 putative NTPase; Provisional
Probab=97.57 E-value=0.00061 Score=48.31 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=27.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 8999549875188999999999850398199-998
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRIT-YVS 125 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vl-YvS 125 (479)
-++|+|+||+|||||...++..+...|.++- |++
T Consensus 5 kI~iTG~PGvGKTTli~Kv~~~L~~~g~~v~GF~T 39 (174)
T PRK13695 5 RIGITGMPGVGKTTLVLKIAELLAREGYKVGGFIT 39 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99987899988999999999998636961746995
No 265
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.57 E-value=0.0011 Score=46.45 Aligned_cols=139 Identities=20% Similarity=0.235 Sum_probs=74.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC--------CEEEEECC----CCHHHHHHH----------------H
Q ss_conf 8578708999549875188999999999850398--------19999864----630478888----------------7
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKH--------RITYVSGE----EAIGQIRLR----------------A 137 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~--------~vlYvS~E----Es~~Qi~~R----------------a 137 (479)
-+.+|.++-|.|+-|+|||||+--++.-.....+ ++-|+.-+ .+......+ .
T Consensus 26 ~i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~p~~G~I~~~~~~~igyvpq~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 105 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPAL 105 (251)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEECCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 98799799999899988999999996688898608999994026204377621876218999986327665389999999
Q ss_pred HHCCCCCCCHHEECCCCH---HH-HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 520157751000034788---99-99999731698289972168766542044556367999999999997530797899
Q gi|254780334|r 138 QRLNTINSSVYIAIETNV---ED-IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMV 213 (479)
Q Consensus 138 ~Rl~~~~~~i~~~~e~~l---~~-il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vi 213 (479)
++++...-.-.-..+.+- .- .+... --.+|++++.|=.. ..+| +...+++...|.+++++.+++++
T Consensus 106 ~~~~~~~~~~~~~~~LSGGq~QRv~iAra-L~~~P~lLiLDEPT----sgLD-----~~~~~~i~~li~~L~~e~g~til 175 (251)
T PRK09544 106 KRVQAGHLIDAPMQKLSGGETQRVLLARA-LLNRPQLLVLDEPT----QGVD-----VNGQVALYDLIDQLRRELDCAVL 175 (251)
T ss_pred HHHCCCHHHHCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 87385224326544589999999999999-97499989980986----4689-----99999999999999983298999
Q ss_pred EEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 98630366543311457877530278515
Q gi|254780334|r 214 LVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 214 lighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
++-|- ...++.+.|-|+.+.|
T Consensus 176 ~vtHD--------l~~~~~~aDrIivLng 196 (251)
T PRK09544 176 MVSHD--------LHLVMAKTDEVLCLNH 196 (251)
T ss_pred EEECC--------HHHHHHHCCEEEEECC
T ss_conf 99068--------9999986999999999
No 266
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.57 E-value=0.0026 Score=43.69 Aligned_cols=38 Identities=34% Similarity=0.535 Sum_probs=35.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 08999549875188999999999850398199998646
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
.+++++|-=|+||||++..+|..+|+.|+|||.+|..-
T Consensus 1 r~i~~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDP 38 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98999689855489999999999996899499995898
No 267
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.57 E-value=0.004 Score=42.31 Aligned_cols=135 Identities=19% Similarity=0.307 Sum_probs=73.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCC-----------
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003478-----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETN----------- 154 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~----------- 154 (479)
-+.+|.++-+.|+-|+||||++--++.-+....+. +++.|+.....-.....+++...+...++....
T Consensus 24 ~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~-i~i~G~~~~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~~ 102 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS-VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 88598199999999981999999996795689777-99927513448799985376745556567888999999999997
Q ss_pred -----------HHHH--------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -----------8999--------------------------999973169828997216876654204455636799999
Q gi|254780334|r 155 -----------VEDI--------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 155 -----------l~~i--------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
++.+ +.. .--.+|++++.|=.. ..+| | .+.+++
T Consensus 103 ~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~-aL~~~P~lliLDEPt----~GLD--p---~~~~~~ 172 (301)
T TIGR03522 103 YGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQ-ALIHDPKVLILDEPT----TGLD--P---NQLVEI 172 (301)
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHH-HHCCCCCEEEEECCC----CCCC--H---HHHHHH
T ss_conf 39998999999999998818856654827677998844599889-870799899994886----6789--8---999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-..|..++++ .+++++-|.-.+ +|.+.|.|..+.
T Consensus 173 ~~~l~~l~~~--~TillssH~l~e--------~e~lcdri~ii~ 206 (301)
T TIGR03522 173 RNVIKNIGKD--KTIILSTHIMQE--------VEAICDRVIIIN 206 (301)
T ss_pred HHHHHHHCCC--CEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf 9999987599--999998785899--------998699999998
No 268
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=97.56 E-value=0.0004 Score=49.61 Aligned_cols=192 Identities=20% Similarity=0.256 Sum_probs=102.3
Q ss_pred CCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC---CCHHHHHHHHH--HCC-------------CCCCCHH
Q ss_conf 787-0899954987518899999999985039819999864---63047888875--201-------------5775100
Q gi|254780334|r 88 VRG-SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE---EAIGQIRLRAQ--RLN-------------TINSSVY 148 (479)
Q Consensus 88 ~~G-s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E---Es~~Qi~~Ra~--Rl~-------------~~~~~i~ 148 (479)
.|| .+|-|.|..|+|||||.--|| .+.+...--+|+.|+ +|...|..-.+ |+| +..+-.|
T Consensus 20 ~pg~GvtAlFG~SGsGKTtli~~ia-GL~rp~~G~i~l~G~~L~ds~k~i~Lp~ekRr~GYVFQeA~LFPHl~Vr~NL~Y 98 (361)
T TIGR02142 20 LPGQGVTALFGRSGSGKTTLIRLIA-GLTRPDEGEIVLNGEVLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRY 98 (361)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH-HCCCCCCCEEEECCEEEECCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHC
T ss_conf 2874068712589970789999987-316756687998874620567766787201135368853550785233455125
Q ss_pred EEC-----C--CCHHHHHHH-----HHH--------------------CCCCCEEEEC-HHHHHHHHHHCCCCCCHHHHH
Q ss_conf 003-----4--788999999-----973--------------------1698289972-168766542044556367999
Q gi|254780334|r 149 IAI-----E--TNVEDIIAT-----LIT--------------------NEKPDLVIID-SIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 149 ~~~-----e--~~l~~il~~-----~i~--------------------~~~~~~vVID-SIQtl~~~~~~s~~GsvsQvr 195 (479)
=+. + .+.+.+++- +++ =.+|+++++| ++.++ |. ..=+
T Consensus 99 G~~~~~~~~r~i~~~~v~~lLgi~hLL~R~p~~LSGGEkQRVAIGRALLs~P~LLLMDEPLaaL-----D~-----~rk~ 168 (361)
T TIGR02142 99 GMKRARPKERRISFERVIELLGIEHLLERLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL-----DE-----PRKK 168 (361)
T ss_pred CCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCHHHC-----CH-----HHHH
T ss_conf 7210574121378899998746751121678875784047788998874187411104662340-----64-----4466
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE-CCCCC--------CCCCCEEEEEEEECCCCCCC
Q ss_conf 9999999975307978999863036654331145787753027851-55566--------65442156763202567651
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE-GGTRN--------TQYDYRILRSVKNRFGPTDE 266 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e-ge~~~--------~~~~~R~Lr~~KNRfG~t~e 266 (479)
|+.=.|-++..+.+||+++|-|- +.-++||.|.|+-+| |.-.- +...++-. ..++--|...+
T Consensus 169 EilPYLerL~~e~~iP~lyVSHs--------l~Ev~rLADrvvvl~~GrV~a~G~~~~v~~~~~l~p~-~~~~~~g~~~~ 239 (361)
T TIGR02142 169 EILPYLERLHAELKIPILYVSHS--------LDEVARLADRVVVLEDGRVEAAGPLEEVWSSPDLPPW-LEREEAGSVLE 239 (361)
T ss_pred HHCCHHHHHHHHHCCCEEEEECC--------HHHHHHHHCEEEEEECCEECCCCCHHHHHCCCCCCCC-CCCCCCCEEEE
T ss_conf 41616767898727988999049--------7999876074787435701036867999536577723-25786633656
Q ss_pred EEEEEECC-CCCEEECCH-HHHHHCCCCCCCCCEE
Q ss_conf 27998515-663110140-4555114766767348
Q gi|254780334|r 267 IGVFEMSD-KGLQEVSDP-SKIFLSDRDSTSPGTA 299 (479)
Q Consensus 267 ~gvf~m~~-~Gl~~v~~p-s~~fl~~~~~~~~Gs~ 299 (479)
.-|-+.++ .||..+.=| ....+-.+.+...|..
T Consensus 240 ~~v~~~~~~ygL~~l~l~e~~~l~V~~~~~~~G~~ 274 (361)
T TIGR02142 240 GVVAEHDQHYGLTALRLGEDGHLWVPEKKGPVGAR 274 (361)
T ss_pred EEEECCCCCCCCEECCCCCCCEEEEECCCCCCCCC
T ss_conf 54110386532012015888389972676765852
No 269
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.56 E-value=0.0036 Score=42.70 Aligned_cols=136 Identities=20% Similarity=0.256 Sum_probs=72.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC------------HHEE---
Q ss_conf 8578708999549875188999999999850398199998646304788887520157751------------0000---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS------------VYIA--- 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~------------i~~~--- 150 (479)
-+.+|+++-+-|+-|+||||+.-.++.-+.-..+ -+++.|.....+...-..++|..... +.++
T Consensus 29 ~v~~Gei~gllGpNGAGKSTli~~l~Gl~~p~sG-~i~i~G~~~~~~~~~~r~~iG~~pq~~~l~~~ltv~enl~~~~~~ 107 (306)
T PRK13536 29 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAG-KITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY 107 (306)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 8859969999999898099999999679578987-799998736545688862689970666567577999999999997
Q ss_pred ----------------CCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ----------------34788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 151 ----------------IETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 151 ----------------~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
....+++. ++.. --.+|+++++|=.. ..+| | +.|..
T Consensus 108 ~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~iA~a-L~~~P~lliLDEPT----~GLD--p----~~r~~ 176 (306)
T PRK13536 108 FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARA-LINDPQLLILDEPT----TGLD--P----HARHL 176 (306)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEECCCC----CCCC--H----HHHHH
T ss_conf 299999999999999987798568667377789989999999999-95599899975875----6789--9----99999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...+++-.++.+.+++++-|.-.+ +|.+.|.|..+.
T Consensus 177 i~~~i~~l~~~G~TillttH~l~E--------~e~lcdrv~im~ 212 (306)
T PRK13536 177 IWERLRSLLARGKTILLTTHFMEE--------AERLCDRLCVLE 212 (306)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf 999999999689899998883899--------998699999997
No 270
>KOG0736 consensus
Probab=97.55 E-value=0.00021 Score=51.64 Aligned_cols=70 Identities=26% Similarity=0.316 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCC-------CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC-----------CCC
Q ss_conf 66632378124888865985787-------089995498751889999999998503981999986-----------463
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRG-------SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG-----------EEA 129 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~G-------s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~-----------EEs 129 (479)
+..+.++-+.++-.+|.--+.++ .++|+.|+||+||||+.-.+|..+. -.++=++. |..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg---~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELG---LHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHC---CCEEECCHHHHHHCCCCHHHHH
T ss_conf 8766027999999984865585300133553799867999875799999999838---7257013898864363313789
Q ss_pred HHHHHHHHHHC
Q ss_conf 04788887520
Q gi|254780334|r 130 IGQIRLRAQRL 140 (479)
Q Consensus 130 ~~Qi~~Ra~Rl 140 (479)
..++..||.|.
T Consensus 479 l~~~f~~a~~~ 489 (953)
T KOG0736 479 LQAIFSRARRC 489 (953)
T ss_pred HHHHHHHHHHC
T ss_conf 99999987526
No 271
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.55 E-value=0.0026 Score=43.75 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH--HHHHHHHCCCCCCC
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047--88887520157751
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ--IRLRAQRLNTINSS 146 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q--i~~Ra~Rl~~~~~~ 146 (479)
.+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+-+++.+. ..+-.|++.-||-..+- +..+...-+.....
T Consensus 136 ~e~l~TGIraID~l~--pigrGQRigIfggsGvGKs~Ll~~I~r~~-~advvVi~lIGeRgrEv~efi~~~~~~~~l~~s 212 (434)
T PRK07196 136 DTPLDVGVNAINGLL--TIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKS 212 (434)
T ss_pred CCCCCCCCEEECCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEEECCEEHHHHHHHHHHHHHCCCCCEE
T ss_conf 872126862441557--70245242101478997899999998973-799899974222349999999987424674326
Q ss_pred HHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 00003478---89---------99999973169828997216876
Q gi|254780334|r 147 VYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 147 i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
+.+....+ +. .+-+..-++.+--++++||+...
T Consensus 213 vvv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~ 257 (434)
T PRK07196 213 VVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 999845889878888999889989999986798569995474688
No 272
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00089 Score=47.08 Aligned_cols=151 Identities=21% Similarity=0.218 Sum_probs=103.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCC
Q ss_conf 7870899954987518899999999985039819999864-630478888752015775100003478899999997316
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE-EAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNE 166 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E-Es~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~ 166 (479)
..|.+.++.|+=.+|||+-+|+.+.+..-+|.+++.+..+ .+..+...-..|.|...+-..+.++.++-+.+...-++.
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~ 81 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKP 81 (201)
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCCCCEECCCHHHHHHHHHHCCCCC
T ss_conf 44789999715768635999999999997598089985253353564336531587665356387578999998513478
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECC--CCCCCCHHHHHHHHHEEE------
Q ss_conf 982899721687665420445563679999999999975307978999863036--654331145787753027------
Q gi|254780334|r 167 KPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTK--EGQIAGPRVIEHMVDAVL------ 238 (479)
Q Consensus 167 ~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK--~G~iAGp~~LeH~VD~vl------ 238 (479)
..+.+.||=.|-+.. +....|.++|-..|++|++-|.-|- .-.|-|.+.|..+.|.+.
T Consensus 82 ~~~~v~IDEaQF~~~--------------~~v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL~aIC 147 (201)
T COG1435 82 PVDCVLIDEAQFFDE--------------ELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKLKAIC 147 (201)
T ss_pred CCCEEEEEHHHHCCH--------------HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 757899961671897--------------899999999861498899954465313287844899999987899988889
Q ss_pred EEECCCCCCCCCCEEEEEE
Q ss_conf 8515556665442156763
Q gi|254780334|r 239 YFEGGTRNTQYDYRILRSV 257 (479)
Q Consensus 239 ~~ege~~~~~~~~R~Lr~~ 257 (479)
++=|+. ..|.+|..
T Consensus 148 ~~Cg~~-----At~~~Rl~ 161 (201)
T COG1435 148 NVCGRK-----ATRTLRLI 161 (201)
T ss_pred HHHCCC-----CEEEEEEC
T ss_conf 875881-----06998841
No 273
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=97.55 E-value=0.0065 Score=40.80 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEE-CCCC
Q ss_conf 632378124888865985787089995498751889999999998503-98199998-6463
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYVS-GEEA 129 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYvS-~EEs 129 (479)
+-+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.++++. +.-++|.. ||-+
T Consensus 137 e~leTGIkaID~l~--pigkGQRigIfggaGvGKTvLl~eli~niak~~~~v~V~a~IGER~ 196 (480)
T CHL00060 137 SIFETGIKVVDLLA--PYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERT 196 (480)
T ss_pred CCHHCCHHHHHCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 61102704443125--4003668876568998878999999961200379889999966773
No 274
>KOG0733 consensus
Probab=97.54 E-value=0.00064 Score=48.16 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=71.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHH
Q ss_conf 98578708999549875188999999999850398199998646304788887520157751000034788999999973
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLIT 164 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~ 164 (479)
=|+.|-+=+|+-|+||||||.|+-.+|..+ |-+.+-+++-|-.+++- --+|..+.++.++. .
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApeivSGvS--------------GESEkkiRelF~~A-~ 279 (802)
T KOG0733 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPEIVSGVS--------------GESEKKIRELFDQA-K 279 (802)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCEEEECCHHHHCCCC--------------CCCHHHHHHHHHHH-H
T ss_conf 287799751644899864789999975212---88548514146531557--------------52289999999987-3
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH------HHHCCCEEEEEEEECCCC
Q ss_conf 1698289972168766542044556367999999999997------530797899986303665
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQY------AKKNGVAMVLVGHVTKEG 222 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~------AK~~~i~vilighvTK~G 222 (479)
...|-+++||-|-++.... +.+ +----|.+...|... -|..+-+|++||--|.+.
T Consensus 280 ~~aPcivFiDeIDAI~pkR-e~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733 280 SNAPCIVFIDEIDAITPKR-EEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred CCCCEEEEEECCCCCCCCH-HHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf 6697599851100136440-457--889999999999985100256666899769982478976
No 275
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=97.54 E-value=0.00064 Score=48.17 Aligned_cols=103 Identities=20% Similarity=0.315 Sum_probs=65.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 089995498751889999999998503--981999986463047888875201577510000347889999999731698
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYK--KHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~--g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
..+.|.|++|+|||.|+..++....+. +.++.|++.|+-..... ....+.+++...+.+ ...
T Consensus 35 npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~-------------~~l~~~~~~~f~~~l---~~~ 98 (219)
T pfam00308 35 NPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFV-------------DALRDNKIEAFKKSY---RNV 98 (219)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH-------------HHHHCCCHHHHHHHH---HHC
T ss_conf 8269988999988899999999999849998288843999999889-------------999818888999997---632
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 28997216876654204455636799999999999753079789998630
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighv 218 (479)
++++||-||.+... + +..+....|....++.+..+++.+..
T Consensus 99 d~l~iDDi~~l~~~-----~----~~ee~lf~l~N~~~~~~~~lllts~~ 139 (219)
T pfam00308 99 DLLLIDDIQFLAGK-----E----KTQEEFFHTFNALHENNKQIVLTSDR 139 (219)
T ss_pred CHHHHCCHHHHCCC-----H----HHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 33652236765686-----4----78999999999999729869997799
No 276
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.54 E-value=0.0029 Score=43.35 Aligned_cols=137 Identities=20% Similarity=0.323 Sum_probs=76.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC--CCC-H----------HEE--
Q ss_conf 8578708999549875188999999999850398199998646304788887520157--751-0----------000--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI--NSS-V----------YIA-- 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~--~~~-i----------~~~-- 150 (479)
-+.+|.++-+.|+-|+|||||+--++.-+....+. +++.|+....+-.....+++.. ... + .+.
T Consensus 43 ~i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p~~G~-I~v~G~~~~~~~~~~~~~ig~v~~q~~~l~~~ltv~e~l~~~~~ 121 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE-VRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAA 121 (236)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECCCCHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 88489599999999830999999996494887159-99999985104098884379995775424679939999999999
Q ss_pred -----------------CCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf -----------------34788999-----------------99997316982899721687665420445563679999
Q gi|254780334|r 151 -----------------IETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT 196 (479)
Q Consensus 151 -----------------~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre 196 (479)
...++++. +... --.+|++++.|=.. ..+| +...++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~rqrv~ia~a-L~~~P~lllLDEPt----~gLD-----~~~~~~ 191 (236)
T cd03267 122 IYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAA-LLHEPEILFLDEPT----IGLD-----VVAQEN 191 (236)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCC-----HHHHHH
T ss_conf 8573899999999999997486877549345699999999999999-96799999997987----6889-----999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+...|.+++++.+++++++-|.-. .++.+.|-++.+.
T Consensus 192 i~~~l~~l~~~~g~till~tH~l~--------ev~~~~Drv~vl~ 228 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMK--------DIEALARRVLVID 228 (236)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf 999999999738989999888789--------9999799999998
No 277
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.0012 Score=46.17 Aligned_cols=136 Identities=14% Similarity=0.277 Sum_probs=72.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC--------------
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003--------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI-------------- 151 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~-------------- 151 (479)
=+.+|.++-|.|+.|+|||||+--++.-..-..++ +++.+.+-. +......+++....+..+++
T Consensus 20 ~i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p~sG~-I~i~G~di~-~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~ 97 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR-VLINGVDVT-AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP 97 (211)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCEECC-CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 98899899999999955999999997699988529-999999999-9998898679995388668999499998758864
Q ss_pred -----------------CCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -----------------4788999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 152 -----------------ETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 152 -----------------e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
...+++. ++..+ -.+|++++.|=-- +.+|. .--++.
T Consensus 98 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiARAL-~~~P~ilLlDEPt----s~LD~-----~~~~~l 167 (211)
T cd03298 98 GLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVL-VRDKPVLLLDEPF----AALDP-----ALRAEM 167 (211)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCCH-----HHHHHH
T ss_conf 6888299999999999876998787289455898999999999998-6599999971887----65598-----999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...|.++.++.++++++|-| .+....++.|.++.++
T Consensus 168 ~~~l~~l~~~~~~Tvi~vTH--------d~~ea~~~adriivl~ 203 (211)
T cd03298 168 LDLVLDLHAETKMTVLMVTH--------QPEDAKRLAQRVVFLD 203 (211)
T ss_pred HHHHHHHHHHHCCEEEEECC--------CHHHHHHHCCEEEEEE
T ss_conf 99999999974998999988--------9999999699999998
No 278
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.54 E-value=0.0006 Score=48.34 Aligned_cols=101 Identities=21% Similarity=0.307 Sum_probs=64.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 089995498751889999999998503--981999986463047888875201577510000347889999999731698
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYK--KHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~--g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
.-..|.|++|.|||.|+..++..+.++ +.+|+|+++|+=..++.. + +...+++...+.. + ..
T Consensus 146 NPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~-a------------l~~~~~~~Fr~~y-r--~~ 209 (447)
T PRK00149 146 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVK-A------------LRNNAMEEFKEKY-R--SV 209 (447)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHH-H------------HHCCCHHHHHHHH-H--CC
T ss_conf 85589779988788999999999998589972899549999999999-9------------8518699999999-7--28
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 289972168766542044556367999999999997530797899986
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
|+++||-||-+.. ... ..+..........+.+--+++..
T Consensus 210 DvLliDDiqfl~g-----k~~----tqeeff~~fn~l~~~~kqiv~ts 248 (447)
T PRK00149 210 DVLLIDDIQFLAG-----KEK----TQEEFFHTFNALHENNKQIVITS 248 (447)
T ss_pred CEEEECHHHHHHC-----CHH----HHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 8543214888605-----577----99999999999998499689957
No 279
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.00063 Score=48.19 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=65.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCEE
Q ss_conf 89995498751889999999998503981999986463047888875201577510000347889999999731698289
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLV 171 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~v 171 (479)
-..|.|++|.|||.|+..++..+...+.+|+|+++|+=..++.. + +...++++..+.. + ..|++
T Consensus 143 PLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F~~~~v~-a------------i~~~~~~~Fr~~y-r--~~DvL 206 (455)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELFTEHLVS-A------------IRSGEMQRFRSFY-R--NVDAL 206 (455)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH-H------------HHCCCHHHHHHHH-H--CCCEE
T ss_conf 75887899997899999999985379986999749999999999-9------------9758899999999-6--38877
Q ss_pred EECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 972168766542044556367999999999997530797899986
Q gi|254780334|r 172 IIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 172 VIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
+||-||-+..- .. ..+......+...+.+--+++..
T Consensus 207 LIDDIQfl~gK-----~~----tqeEff~tfN~L~~~~KQIVits 242 (455)
T PRK12422 207 FIEDIEVFSGK-----GA----TQEEFFHTFNSLHTEGKLIVISS 242 (455)
T ss_pred EEEHHHHHHCC-----HH----HHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 63147887284-----88----99999999999998599699968
No 280
>pfam09807 DUF2348 Uncharacterized conserved protein (DUF2348). Members of this family of putative uncharacterized proteins have no known function.
Probab=97.53 E-value=0.011 Score=39.05 Aligned_cols=173 Identities=14% Similarity=0.140 Sum_probs=112.2
Q ss_pred CHHHHHHHC---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCC------C
Q ss_conf 124888865---9857870899954987518899999999985039819999864630478888752015775------1
Q gi|254780334|r 76 IDELDRVTG---GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINS------S 146 (479)
Q Consensus 76 i~eLDrvLG---GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~------~ 146 (479)
++||+..|+ ..+.+|.++|+.-. .+-=|-|..++....-+.+.+|++++.+.+..-...-+.|||.+.. +
T Consensus 2 f~eln~~l~~~~~~~~~Gk~ilv~D~-~tDGSFllhh~Ls~~Lk~~~~V~flal~qsfsHY~~V~~KLG~NL~~~~~~G~ 80 (249)
T pfam09807 2 FPELNSLLDAAPDTDEQGKVILLCDC-KTDGSFLVHHFLSFYLRAGCKVCFLALVQSFSHYSIVGQKLGVNLTTAKDNGQ 80 (249)
T ss_pred CHHHHHHHCCCCCCCCCCCEEEEECC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHCCCC
T ss_conf 45665351578987888648999727-88718899999999960799389996259878999999986577344313796
Q ss_pred HHE-------------EC-------------CCCHHHHHHH---HHH---CCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf 000-------------03-------------4788999999---973---169828997216876654204455636799
Q gi|254780334|r 147 VYI-------------AI-------------ETNVEDIIAT---LIT---NEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 147 i~~-------------~~-------------e~~l~~il~~---~i~---~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
+.+ .+ ...+.++.+. .+. ..++-.++||.+..+.+ .-++..+|
T Consensus 81 l~fld~L~~~~~~~~~~~~~~~~l~~lr~~~s~~L~~Ly~~I~~~l~~~~~~~~~~lmIDdlS~Ll~-----lG~s~~~V 155 (249)
T pfam09807 81 LVFLEGLKSSVDVLFKCSDGDQPLQFLREANAGNLKSLFRFIQETLKPSDSRGSPVLMVDDLSVLLS-----LGVSAVAV 155 (249)
T ss_pred EEEECCCCCHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHH-----CCCCHHHH
T ss_conf 8986022101332203677887403441655430999999999997314678980899917178877-----46988999
Q ss_pred HHHHHHHH-HHHHHCCCEEEEEEEECCCCCC---C-CHHHHHHHHHEEEEEECCC----CCCCCCCEEE
Q ss_conf 99999999-9753079789998630366543---3-1145787753027851555----6665442156
Q gi|254780334|r 195 RTSVQAMI-QYAKKNGVAMVLVGHVTKEGQI---A-GPRVIEHMVDAVLYFEGGT----RNTQYDYRIL 254 (479)
Q Consensus 195 re~~~~L~-~~AK~~~i~vilighvTK~G~i---A-Gp~~LeH~VD~vl~~ege~----~~~~~~~R~L 254 (479)
-...+... ..+++.+..+++.-|-.-+-.- + =.+.|+|+.|.++..|+=. +|=+.++.++
T Consensus 156 l~FlhYc~~~~~~~~~~slV~L~H~d~~~~de~~~~l~~~l~h~ad~vi~ve~L~TG~skDVhGqL~v~ 224 (249)
T pfam09807 156 LDFLHYCRATVCSELQGNLVILVHGDEYASDERPALLLLGLSHQSHLILKAEGLATGFCRDVHGQLTVL 224 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 999999999986524885899982686654205689999766755189995477870440343627999
No 281
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.53 E-value=0.00098 Score=46.78 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=76.2
Q ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-------C-CCCCEEEEECCCCHHHHHHH---------
Q ss_conf 781248888659857870899954987518899999999985-------0-39819999864630478888---------
Q gi|254780334|r 74 THIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-------Y-KKHRITYVSGEEAIGQIRLR--------- 136 (479)
Q Consensus 74 TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-------~-~g~~vlYvS~EEs~~Qi~~R--------- 136 (479)
+=++++|- .+.+|...+|.|++|+|||||.-.+|.-.- . .+...+|+.=+-=..+--.|
T Consensus 407 ~ll~~l~~----~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~ 482 (604)
T COG4178 407 TLLSELNF----EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAA 482 (604)
T ss_pred EEECCCEE----EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCC
T ss_conf 42146526----54799879987899987889999996458567874416898755771488777876589998089997
Q ss_pred --------------------HHHCCCCCCCHHEECCCCHHHH-HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf --------------------7520157751000034788999-9999731698289972168766542044556367999
Q gi|254780334|r 137 --------------------AQRLNTINSSVYIAIETNVEDI-IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 137 --------------------a~Rl~~~~~~i~~~~e~~l~~i-l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
++|++-..+--.+++.-.-.-+ .+. +--.||+.+|+|--. +.+| .
T Consensus 483 ~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR-ilL~kP~~v~LDEAT----sALD---------e 548 (604)
T COG4178 483 PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR-LLLHKPKWVFLDEAT----SALD---------E 548 (604)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCH----HCCC---------H
T ss_conf 7799599999999819198999873327576645852789999999-997099989980601----1259---------5
Q ss_pred HHHHHHHHHHHH--CCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 999999997530--79789998630366543311457877530278515
Q gi|254780334|r 196 TSVQAMIQYAKK--NGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 196 e~~~~L~~~AK~--~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
+...+|.+..|+ .+++++-|||-++ |++.-+-.+.++.
T Consensus 549 ~~e~~l~q~l~~~lp~~tvISV~Hr~t---------l~~~h~~~l~l~~ 588 (604)
T COG4178 549 ETEDRLYQLLKEELPDATVISVGHRPT---------LWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHH---------HHHHHHHHEEECC
T ss_conf 789999999985489978999556000---------5788754323114
No 282
>PRK08903 hypothetical protein; Validated
Probab=97.53 E-value=0.0012 Score=46.15 Aligned_cols=97 Identities=19% Similarity=0.322 Sum_probs=62.1
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHH
Q ss_conf 88886598578708999549875188999999999850398199998646304788887520157751000034788999
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDI 158 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i 158 (479)
+..... +-.++....|.|++|+|||.|+.-++......+.++.|++.++......
T Consensus 32 l~~~~~-~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~------------------------ 86 (227)
T PRK08903 32 LRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPASPLLAFD------------------------ 86 (227)
T ss_pred HHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHH------------------------
T ss_conf 998874-3887866999899999888999999999980699749965110457774------------------------
Q ss_pred HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999731698289972168766542044556367999999999997530797899986
Q gi|254780334|r 159 IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 159 l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
.....++++||-||.+- . -.|. ....|...+++.+-..+++.
T Consensus 87 -----~~~~~d~l~iDDi~~i~-----~----~~q~--~lF~l~N~~~~~~~~~ll~s 128 (227)
T PRK08903 87 -----FDPRAELYAVDDVERLD-----D----AQQI--ALFNLFNRVRAHGKTALLVA 128 (227)
T ss_pred -----HHHCCCEEEEECCCCCC-----C----HHHH--HHHHHHHHHHHCCCCEEEEC
T ss_conf -----20018989996411489-----5----6999--99999999997299489971
No 283
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.52 E-value=0.0031 Score=43.15 Aligned_cols=150 Identities=20% Similarity=0.333 Sum_probs=86.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--------------HHHHHHHHHHCCCCCCCHH---
Q ss_conf 85787089995498751889999999998503981999986463--------------0478888752015775100---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA--------------IGQIRLRAQRLNTINSSVY--- 148 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs--------------~~Qi~~Ra~Rl~~~~~~i~--- 148 (479)
-+.+|..+=|.|+-|+|||||+--++.-..-. ..-+.+.|.-+ .+-+.+.+.-+|.....+.
T Consensus 46 eV~kGE~vGIIG~NGAGKSTLLKiIaGI~~PT-sG~V~V~Gk~sLL~lgaGf~~eLTGrENI~L~g~~lGlsk~eI~~~~ 124 (549)
T PRK13545 46 EVPEGEIVGIVGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGITKEKIKEII 124 (549)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 86489899998899998999999996898898-60899946898774055769776299999988998498999999989
Q ss_pred --EECCCCHHH---------------HHHH-HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf --003478899---------------9999-9731698289972168766542044556367999999999997530797
Q gi|254780334|r 149 --IAIETNVED---------------IIAT-LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGV 210 (479)
Q Consensus 149 --~~~e~~l~~---------------il~~-~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i 210 (479)
+..-.++.+ -+.. ..-...|++++||=.- +.|...=.+-|..++..+ ++.+.
T Consensus 125 deIiEFAELGdFid~PVKtYSSGMkaRLgFAIA~~~dPDILIIDEaL---------SVGD~~F~~Kc~~rm~ef-~e~gk 194 (549)
T PRK13545 125 PEIIDFADIGKFMYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL---------SVGDQTFTKKCLDKMNEF-KEQGK 194 (549)
T ss_pred HHHHHHHCHHHHHHCHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCC---------CCCCHHHHHHHHHHHHHH-HHCCC
T ss_conf 99999856788873826340886899999999982499999994620---------057899999999999999-97898
Q ss_pred EEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 899986303665433114578775302785155566654421567632025676512
Q gi|254780334|r 211 AMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEI 267 (479)
Q Consensus 211 ~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~ 267 (479)
++++|-|- ...+.++.|.++.+|.- ..| .||+++|+
T Consensus 195 TIvfVSHs--------l~~Vk~~C~R~iWLe~G------~vr-------~~G~~~eV 230 (549)
T PRK13545 195 TIFFISHS--------LSQVKSFCTKALWLHYG------QVK-------EYGDIKEI 230 (549)
T ss_pred EEEEEECC--------HHHHHHHCCEEEEEECC------EEE-------EECCHHHH
T ss_conf 89999588--------89999857310634386------678-------74888899
No 284
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.52 E-value=0.0015 Score=45.44 Aligned_cols=135 Identities=20% Similarity=0.366 Sum_probs=76.8
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH----HHHHHHHHHCCCCCC
Q ss_conf 6323781248888659857870899954987518899999999985039819999864630----478888752015775
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI----GQIRLRAQRLNTINS 145 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~----~Qi~~Ra~Rl~~~~~ 145 (479)
.++++|...|+.| .==+.||+++=|+|+.|.|||||+-=++.+..-.- --+-|.|++-. .|+..==.|+|+...
T Consensus 9 ~~Y~~~~~aL~~v-~l~i~kG~F~FLtG~SGAGKttLLKLl~~~~~P~~-G~v~~~G~~~~~l~~~~~P~LRR~iGvvFQ 86 (215)
T TIGR02673 9 KSYPGGVEALHDV-SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR-GQVRVAGEDVSRLRGRQLPLLRRRIGVVFQ 86 (215)
T ss_pred EECCCCCHHHCCC-CEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCC-CEEEECCEECCCCCCCCCHHHHCCCCEEEE
T ss_conf 0078985113276-44752774078872778617899999985269875-808888740466775643122131543784
Q ss_pred CHHEECCCC-HHHH-----------------------------------------------HHHHHHCCCCCEEEECHHH
Q ss_conf 100003478-8999-----------------------------------------------9999731698289972168
Q gi|254780334|r 146 SVYIAIETN-VEDI-----------------------------------------------IATLITNEKPDLVIIDSIQ 177 (479)
Q Consensus 146 ~i~~~~e~~-l~~i-----------------------------------------------l~~~i~~~~~~~vVIDSIQ 177 (479)
+..++.+-+ .||+ ++.+|- .+|.+++-|=-
T Consensus 87 Df~LL~~rTv~eNVAl~L~V~G~~~~~I~~rV~~~L~~vGL~~K~~~~P~~LSGGEQQRvaIARAiv-~~P~lLLADEP- 164 (215)
T TIGR02673 87 DFRLLPDRTVYENVALPLEVRGKKKREIQRRVEAALRLVGLEHKADAFPEQLSGGEQQRVAIARAIV-NSPELLLADEP- 164 (215)
T ss_pred CCCCCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEECC-
T ss_conf 2211011661341121011138880336789999998528632542572100472578888876530-48967987788-
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 7665420445563679999999999975307978999863
Q gi|254780334|r 178 TLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 178 tl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
+.++|. +..+-.-.|..-..+.|+||++.-|
T Consensus 165 ---TGNLD~------~~~~~iL~ll~~~n~~GtTV~vATH 195 (215)
T TIGR02673 165 ---TGNLDP------ALSERILDLLKELNKRGTTVIVATH 195 (215)
T ss_pred ---CCCCCH------HHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf ---999687------6789999999998418987999807
No 285
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.52 E-value=0.008 Score=40.15 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=66.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEE-CCCCHH--HHHHHHHHCCCCC
Q ss_conf 6632378124888865985787089995498751889999999998503-98199998-646304--7888875201577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYVS-GEEAIG--QIRLRAQRLNTIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYvS-~EEs~~--Qi~~Ra~Rl~~~~ 144 (479)
.+-+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.++++. +.-++|+. ||-+.+ .+......-+...
T Consensus 122 ~e~l~TGIkaID~l~--pigrGqrigIfggaGvGKTvL~~~ii~n~~~~~~~v~V~~~iGER~rEv~e~~~el~~~g~l~ 199 (459)
T PRK12597 122 TELLETGIKVIDLLC--PIAKGGKTGLFGGAGVGKTVLMMELIFNISKRHQGSSVFAGVGERSREGHELYLEMKESGVLD 199 (459)
T ss_pred CCCCCCCHHHHHCCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 872003805554126--635787777436899982157899999877551783688862454688999999986368752
Q ss_pred CCHHEECCCCH---H---------HHHHHHH-HCCCCCEEEECHHHH
Q ss_conf 51000034788---9---------9999997-316982899721687
Q gi|254780334|r 145 SSVYIAIETNV---E---------DIIATLI-TNEKPDLVIIDSIQT 178 (479)
Q Consensus 145 ~~i~~~~e~~l---~---------~il~~~i-~~~~~~~vVIDSIQt 178 (479)
..+.+....+- . .+-+..- ++.+--++++||+..
T Consensus 200 ~tvvV~~~~depp~~R~~~~~~a~tiAEyFrD~~g~dVLl~~D~ltR 246 (459)
T PRK12597 200 KTVMVYGQMNEPPGARMRVVLTGLTAAEYFRDEEKEDVLLFIDNIFR 246 (459)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 48999806889999998777788899999986379978999557689
No 286
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=97.51 E-value=0.0037 Score=42.62 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=69.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH-----HHH-HHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCC
Q ss_conf 99954987518899999999985039819999864630-----478-888752015775100003478899999997316
Q gi|254780334|r 93 ILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI-----GQI-RLRAQRLNTINSSVYIAIETNVEDIIATLITNE 166 (479)
Q Consensus 93 ~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~-----~Qi-~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~ 166 (479)
+||.|-..+|||.++.+++... +.++.|+..-+.. ..| +.|.+| + .....+-...++.+++.. ..
T Consensus 1 iLVtGG~rSGKS~~AE~la~~~---~~~~~YiAT~~~~D~Em~~RI~~Hr~~R-~--~~w~tiE~~~~l~~~l~~---~~ 71 (166)
T pfam02283 1 ILVTGGARSGKSRFAERLALAS---GGPVVYIATAQAFDDEMAERIARHRARR-P--AGWTTIEEPLDLAEALAR---LP 71 (166)
T ss_pred CEEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHCC-C--CCCEEEECCCCHHHHHHH---CC
T ss_conf 9886887733899999999855---9981999769888889999999999718-9--996799774459999984---69
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 98289972168766542044556367999999999997530797899986
Q gi|254780334|r 167 KPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 167 ~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
+.+.+.||++.+..+..+..... ...+.+....|....++...++++|.
T Consensus 72 ~~~~vLiDclt~wl~N~l~~~~~-~~~~~~~~~~ll~~l~~~~~~~ViVs 120 (166)
T pfam02283 72 GGDVVLVDCLTLWLTNLLFAGDD-EEDIEAEVDELLAALKARPAPVVLVS 120 (166)
T ss_pred CCCEEEEECHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 89869997177899998762374-77899999999999974899799997
No 287
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.51 E-value=0.0043 Score=42.12 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8578708999549875188999999999850398199998646
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
-+.+|.++-|.|+-|+|||||+--++.-.....+. +++.+++
T Consensus 22 ~i~~Gei~gliG~nGaGKSTL~~~i~Gl~~p~~G~-I~~~G~~ 63 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS-VLFDGED 63 (236)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEE
T ss_conf 98899899999899973999999996798788318-9999996
No 288
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.51 E-value=0.0006 Score=48.33 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=33.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 99954987518899999999985039819999864630
Q gi|254780334|r 93 ILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAI 130 (479)
Q Consensus 93 ~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~ 130 (479)
+=|+|+||+|||||.-++...+.++|+++..++..-|.
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS 39 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 76258997878999999999999789837999968887
No 289
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.50 E-value=0.0066 Score=40.75 Aligned_cols=164 Identities=16% Similarity=0.273 Sum_probs=85.8
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHH-CC--CCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999-864630478888752-01--577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYV-SGEEAIGQIRLRAQR-LN--TIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYv-S~EEs~~Qi~~Ra~R-l~--~~~ 144 (479)
.+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.+.. .+ .++|. -||-. ..+..-.+. ++ ...
T Consensus 121 ~e~l~TGIraID~l~--pig~GQRigIfgg~GvGKt~Ll~~i~~~~~-ad-v~V~aliGeRg-rEv~efi~~~~~~~~l~ 195 (418)
T TIGR03498 121 GEPLDTGVRVIDTFL--PLCRGQRLGIFAGSGVGKSTLLSMLARNTD-AD-VVVIALVGERG-REVREFLEDDLGEEGLK 195 (418)
T ss_pred CCCCCCCCCHHHHCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHCC-CC-EEEEEEEEEEH-HHHHHHHHHHHHCCCCC
T ss_conf 874315760212015--502576641137899988899999987507-98-68998830268-99999999865315644
Q ss_pred CCHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHH---------HHHH---CCCCCCHHHHHHHHHH
Q ss_conf 5100003478---89---------999999731698289972168766---------5420---4455636799999999
Q gi|254780334|r 145 SSVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLW---------SQTA---ESSPGTVIQVRTSVQA 200 (479)
Q Consensus 145 ~~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~---------~~~~---~s~~GsvsQvre~~~~ 200 (479)
..+.+....+ .. .+-+...++.+--++++||+.... ..+. .+.|+++. ....+
T Consensus 196 ~tvvv~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f---~~l~~ 272 (418)
T TIGR03498 196 RSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVF---SELPR 272 (418)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHH
T ss_conf 269999448898788888887877899999867983899955725889999999986589998677884177---77268
Q ss_pred HHHHH---HH--CCCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 99975---30--79789998630366543311--45787753027851
Q gi|254780334|r 201 MIQYA---KK--NGVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 201 L~~~A---K~--~~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~e 241 (479)
|..-| +. -.||.|-+-. +..+.+..| ..+--+.|..+++.
T Consensus 273 l~ERag~~~~~~GSIT~~~~v~-~~~dD~~dpi~d~~~~i~Dg~ivLs 319 (418)
T TIGR03498 273 LLERAGPGAEGKGSITGIFTVL-VDGDDHNEPVADAVRGILDGHIVLD 319 (418)
T ss_pred HHHHHCCCCCCCEEEEEEEEEE-CCCCCCCCCCHHHHHHHCCEEEEEC
T ss_conf 7865136899985699999996-3388867761777767626389984
No 290
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0019 Score=44.74 Aligned_cols=212 Identities=16% Similarity=0.205 Sum_probs=97.1
Q ss_pred CCCCCCCCCCCCCCH-------HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 334556663237812-------4888865985787089995498751889999999998503981999986463047888
Q gi|254780334|r 63 EESIEEESRIQTHID-------ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL 135 (479)
Q Consensus 63 ~~~~~~~~Ri~TGi~-------eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~ 135 (479)
+++..+.+|-.+.+- .|-+.+..|=++ ...|++|++|+||+||+..+|..+-.......+-...-.+..-..
T Consensus 12 ~~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gRl~-HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~ 90 (352)
T PRK09112 12 DIDGVPSPSENNRLFGHEEARAFLAQAYREGRLH-HALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASP 90 (352)
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf 8899989644646278699999999999849965-246535899808999999999998669986668655678887877
Q ss_pred HHHHCCCC-CCCHH-E-----------ECCCCHHHHHHHHHH-------CCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 87520157-75100-0-----------034788999999973-------1698289972168766542044556367999
Q gi|254780334|r 136 RAQRLNTI-NSSVY-I-----------AIETNVEDIIATLIT-------NEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 136 Ra~Rl~~~-~~~i~-~-----------~~e~~l~~il~~~i~-------~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
-+.++... +.+++ + -....++++- .+.+ ..+++++|||....|. +
T Consensus 91 ~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR-~l~~~~~~~~~~~~~kv~Iid~ad~m~--------------~ 155 (352)
T PRK09112 91 LWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIR-RVTHFLSQTSGDGNWRIVIIDPADDMN--------------R 155 (352)
T ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHHH--------------H
T ss_conf 8999974899995655343220214543357779999-999984548866880699981878746--------------9
Q ss_pred HHHHHHHHHHHH--CCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEE-
Q ss_conf 999999997530--79789998630366543311457877530278515556665442156763202567651279985-
Q gi|254780334|r 196 TSVQAMIQYAKK--NGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEM- 272 (479)
Q Consensus 196 e~~~~L~~~AK~--~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m- 272 (479)
..++.|.+...+ .++.++||-|- .+ ++++.+.- |..+-||.+-++--+.+.
T Consensus 156 ~aaNALLK~LEEPp~~~~fiLit~~--~~-----~ll~TI~S-------------------RCq~~~f~pL~~~di~~~L 209 (352)
T PRK09112 156 NAANAILKTLEEPPARALFILISHS--SG-----RLLPTIRS-------------------RCQPISLKPLDDDELKKAL 209 (352)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECC--HH-----HCHHHHHH-------------------HCCCCCCCCCCHHHHHHHH
T ss_conf 9999999985348987489988699--77-----77689997-------------------4332148893989999999
Q ss_pred ----CCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf ----1566311014045551147667673489973048974115533101
Q gi|254780334|r 273 ----SDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLV 318 (479)
Q Consensus 273 ----~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQALv 318 (479)
.+.+.. .+...-++....+..+|-++...-.|.-.+.-++..|.
T Consensus 210 ~~i~~~~~~~--~~~~~~~l~~~a~GS~~~Al~L~~~~gl~i~~~~~~ll 257 (352)
T PRK09112 210 SHLGSKQGIS--AGEETEALLQRSEGSVRKALLLLNYGGLEIIDTVDQLL 257 (352)
T ss_pred HHHHHCCCCC--CHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9875126899--87999999987089988999874487799999999998
No 291
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.003 Score=43.21 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=32.9
Q ss_pred CHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 12488886598578708999549875188999999999850398199998646
Q gi|254780334|r 76 IDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 76 i~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
..-||.+ .=-+.+|.++.|.|+-|+|||||+.-++...... .--+++.+++
T Consensus 17 ~~aL~~v-sl~i~~Ge~~~lvG~nGaGKSTL~~~l~G~~~p~-~G~i~i~G~~ 67 (501)
T PRK11288 17 VKALDDI-SFDVRAGQVHALMGENGAGKSTLLKILSGNYQPD-AGSVLIDGQE 67 (501)
T ss_pred EEEECCE-EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC-CEEEEECCEE
T ss_conf 9987765-8998898199998999981999999984799997-1699999998
No 292
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.0026 Score=43.69 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 2378124888865985787089995498751889999999998503981999986463
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA 129 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs 129 (479)
++.|.+-|+. +.=-+.+|.++-|.|+-|+|||||+..++.-+.-..++ +++.|.+.
T Consensus 11 Y~~~~~aL~~-vsl~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G~-I~v~G~d~ 66 (274)
T PRK13644 11 YPDGTPALEN-INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK-VLVSGIDT 66 (274)
T ss_pred CCCCCEEEEE-EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCEEC
T ss_conf 5999846631-17798489999999999980999999997068588872-99999987
No 293
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.50 E-value=0.0029 Score=43.32 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=70.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC----------------------
Q ss_conf 8578708999549875188999999999850398199998646304788887520157----------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI---------------------- 143 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~---------------------- 143 (479)
=+.+|.++.|.|+-|+|||||+--++.-+....+.+ ++.+++ ..+.+ .+++..
T Consensus 21 ~i~~Ge~~~liGpNGaGKSTllk~i~Gl~~p~~G~i-~i~g~~-~~~~~---~~igyv~Q~~~~~~~~~ltv~e~v~~~~ 95 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI-RVFGKP-LEKER---KRIGYVPQRRSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEE-HHHHC---CCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 985998999999999869999999976878897589-999998-50421---8289973563335558973999998577
Q ss_pred ----------CCCH-----HEECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf ----------7510-----00034788999-----------------999973169828997216876654204455636
Q gi|254780334|r 144 ----------NSSV-----YIAIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 144 ----------~~~i-----~~~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
.... .++...++++. ++..+ -.+|++++.|-.. +.+| +
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSgGqkQRv~iAraL-~~~P~lLlLDEPt----sgLD-----~ 165 (213)
T cd03235 96 YGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARAL-VQDPDLLLLDEPF----AGVD-----P 165 (213)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC-----H
T ss_conf 6543222688299999999999987999998198465798999999999999-6699999981886----6789-----9
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 799999999999753079789998630366543311457877530278515
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
....++...|.++ ++.+++++++-|- ....+.+.|-|+.+++
T Consensus 166 ~~~~~~~~~i~~l-~~~g~tii~vtHd--------l~~~~~~~drii~l~~ 207 (213)
T cd03235 166 KTQEDIYELLREL-RREGMTILVVTHD--------LGLVLEYFDRVLLLNR 207 (213)
T ss_pred HHHHHHHHHHHHH-HHCCCEEEEEECC--------HHHHHHHCCEEEEECC
T ss_conf 9999999999999-9689999999079--------8999997999999999
No 294
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0022 Score=44.22 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=62.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-CC-CCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHH
Q ss_conf 8578708999549875188999999999850-39-8199998646----3047888875201577510000347889999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAY-KK-HRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDII 159 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-~g-~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il 159 (479)
.+-+|.++-+.|+.|+||||=.-.+|+..+. .| .+|.+|+..- ..+|++.+++-||+.-.- +....++...+
T Consensus 344 ~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~--~~~~~~l~~~l 421 (557)
T PRK12727 344 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE--ADSAESLLDLL 421 (557)
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEE--ECCHHHHHHHH
T ss_conf 1540764787437776731179999999999739981899972664087999999999983975798--28999999999
Q ss_pred HHHHHCCCCCEEEECHH
Q ss_conf 99973169828997216
Q gi|254780334|r 160 ATLITNEKPDLVIIDSI 176 (479)
Q Consensus 160 ~~~i~~~~~~~vVIDSI 176 (479)
.. -...++|.||..
T Consensus 422 ~~---l~~~~lvliDTa 435 (557)
T PRK12727 422 ER---LRDYKLVLIDTA 435 (557)
T ss_pred HH---HCCCCEEEEECC
T ss_conf 98---369998999499
No 295
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.49 E-value=0.00085 Score=47.25 Aligned_cols=88 Identities=20% Similarity=0.162 Sum_probs=41.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECC-CCCCCCCCCCCHHHH------HHHHHHHCCCCCCCCEEEEE
Q ss_conf 24776046866655558988751111024622210014-561115432587999------99999724886887859998
Q gi|254780334|r 326 PRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIA-GGYRISEPAADVAVA------AALISSILSIPLPSDFVYFG 398 (479)
Q Consensus 326 p~R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~-gG~~i~~pa~DLaia------~ailSs~~~~~~~~~~~~~G 398 (479)
.+-...|+|.+.+. ..-++++.+.-.++...|--.. --+...+|.+|-.-. +.+..-....|.--++. +|
T Consensus 520 G~i~idg~~~~~~~--~~~~r~~i~~v~Q~~~lf~gTi~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~lp~g~~t~-i~ 596 (694)
T TIGR03375 520 GSVLLDGVDIRQID--PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ-IG 596 (694)
T ss_pred CEEEECCEECCCCC--HHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCE-EC
T ss_conf 87998985425499--9999730213576771107469999841699999999999999819799997185667877-46
Q ss_pred EE--ECCCEEEEECCHHHHHHHHHHC
Q ss_conf 74--2473163407889999999976
Q gi|254780334|r 399 EV--SLSGSVRAVGHMQQRLKEAEKI 422 (479)
Q Consensus 399 El--~L~GeIR~V~~i~~ri~eA~~~ 422 (479)
|- +|+| |..+|+.-|+-+
T Consensus 597 e~G~~LSg------GqrQri~lARAl 616 (694)
T TIGR03375 597 ERGRSLSG------GQRQAVALARAL 616 (694)
T ss_pred CCCCCCCH------HHHHHHHHHHHH
T ss_conf 89994689------999999999999
No 296
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.49 E-value=0.0041 Score=42.22 Aligned_cols=137 Identities=21% Similarity=0.296 Sum_probs=70.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE----EECCCCH----HHHHHHHHHCCCCCCCHHEECC-CCHH
Q ss_conf 85787089995498751889999999998503981999----9864630----4788887520157751000034-7889
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITY----VSGEEAI----GQIRLRAQRLNTINSSVYIAIE-TNVE 156 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY----vS~EEs~----~Qi~~Ra~Rl~~~~~~i~~~~e-~~l~ 156 (479)
-+.+|.++-|.|+-|+|||||+--++.-..-..+.+.+ +.+.... ..++....+++....+..++.. +-.+
T Consensus 23 ~i~~Ge~~aliG~sGsGKSTLl~~l~gl~~p~~G~i~~~~~~i~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~e 102 (248)
T PRK11264 23 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLE 102 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHCEEEEECCCCCCCCCCHHH
T ss_conf 98799899999999980999999997589999867999999952887564327799998725279902775588877999
Q ss_pred HH------------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCC
Q ss_conf 99------------------------------------------------999973169828997216876654204455
Q gi|254780334|r 157 DI------------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSP 188 (479)
Q Consensus 157 ~i------------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~ 188 (479)
++ ++.. --.+|++++.|=.. ..+|
T Consensus 103 ni~~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRvaiAra-L~~~P~iLllDEPT----s~LD--- 174 (248)
T PRK11264 103 NIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA-LAMRPEVILFDEPT----SALD--- 174 (248)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHH-CCCCCCEEEECCCC----CCCC---
T ss_conf 999999996699889999999999998599513337801089999889998763-14799999987987----6589---
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 63679999999999975307978999863036654331145787753027851
Q gi|254780334|r 189 GTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 189 GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+...+++...|.+++++ +.++++|-|- ...+.++.|.++.++
T Consensus 175 --~~~~~~i~~~l~~l~~~-g~tii~vtHd--------l~~~~~~adrv~vm~ 216 (248)
T PRK11264 175 --PELVGEVLNTIRQLAQE-KRTMVIVTHE--------MSFARDVADRAIFMD 216 (248)
T ss_pred --HHHHHHHHHHHHHHHHC-CCCEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf --99999999999999976-9928999899--------999999699899998
No 297
>PRK06893 DNA replication initiation factor; Validated
Probab=97.49 E-value=0.002 Score=44.60 Aligned_cols=94 Identities=16% Similarity=0.322 Sum_probs=62.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
++....|.|++|+|||.|+..++......+.+++|+..++... + ..++++. ++ ..
T Consensus 38 ~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~--------~--------------~~~~l~~-l~--~~ 92 (229)
T PRK06893 38 KQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------F--------------SPAVLEN-LE--QQ 92 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH--------C--------------CHHHHHH-HH--HC
T ss_conf 6987999899999889999999999997189859997377564--------0--------------6999987-65--47
Q ss_pred CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 289972168766542044556367999999999997530797899986
Q gi|254780334|r 169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
++++||-+|.+.... +..+....|..-+++.+.+.+++.
T Consensus 93 d~l~iDDi~~i~g~~---------~~e~~lF~l~N~l~~~~~~~ll~s 131 (229)
T PRK06893 93 DLVCLDDLQAVIGNE---------EWELAIFDLFNRIKESGKTLLLIS 131 (229)
T ss_pred CEEEEECHHHHCCCH---------HHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 979996723424883---------899999999999997599179985
No 298
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.0024 Score=43.93 Aligned_cols=137 Identities=17% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH----------------------HH----------
Q ss_conf 8578708999549875188999999999850398199998646304----------------------78----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG----------------------QI---------- 133 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~----------------------Qi---------- 133 (479)
-+.+|.++.|.|+.|+|||||+--++.-.....+.+. +.+..-.. .+
T Consensus 23 ~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~p~~G~I~-~~G~~i~~~~~~~g~vfQ~~~l~p~~tv~env~~~l~~~g~~ 101 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPPQHGSIT-LDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE 101 (255)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE-ECCCCCCCCCHHCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 9869989999999984699999999759988997185-799647886211069945575475687999999899874898
Q ss_pred ----HHH----HHHCCCCCCCHHEECCCCH--HH--HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ----888----7520157751000034788--99--99999731698289972168766542044556367999999999
Q gi|254780334|r 134 ----RLR----AQRLNTINSSVYIAIETNV--ED--IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 134 ----~~R----a~Rl~~~~~~i~~~~e~~l--~~--il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L 201 (479)
+.+ .+++++..-.-....+.+= .+ .++..+ -.+|++++.|=.- ..+|. ..-.+.-..|
T Consensus 102 ~~~~~~~~~~~L~~vgL~~~~~~~p~~LSGGqkQRVaiArAL-~~~P~iLllDEPt----~~LD~-----~~r~~l~~ll 171 (255)
T PRK11248 102 KMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARAL-AANPQLLLLDEPF----GALDA-----FTREQMQELL 171 (255)
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCCH-----HHHHHHHHHH
T ss_conf 789999999999976990244189334999999999999999-7299999980887----77998-----9999999999
Q ss_pred HHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9975307978999863036654331145787753027851
Q gi|254780334|r 202 IQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.++.++.++++++|-|-- ....++.|-|+.+.
T Consensus 172 ~~l~~~~g~Til~vTHdl--------~ea~~ladrv~vm~ 203 (255)
T PRK11248 172 LKLWQETGKQVLLITHDI--------EEAVFMATELVLLS 203 (255)
T ss_pred HHHHHHCCCEEEEECCCH--------HHHHHHCCEEEEEE
T ss_conf 999996199999988689--------99999699999982
No 299
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.0038 Score=42.51 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=71.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH-----------------------------
Q ss_conf 857870899954987518899999999985039819999864630478888-----------------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLR----------------------------- 136 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~R----------------------------- 136 (479)
-+.+|.++-+.|+-|+|||||+--++.-.....+. +++.++.-..+.+.+
T Consensus 22 ~v~~Gei~gllG~NGaGKTTll~~i~Gl~~p~~G~-i~i~G~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~l~g~ 100 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE-VLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGL 100 (210)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 88799599999899984999999996002668998-99999868844360199964766679999999999999997499
Q ss_pred ------------HHHCCCCCCCHHEECCCCHH--H--HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ------------75201577510000347889--9--9999973169828997216876654204455636799999999
Q gi|254780334|r 137 ------------AQRLNTINSSVYIAIETNVE--D--IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 137 ------------a~Rl~~~~~~i~~~~e~~l~--~--il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~ 200 (479)
.+++++..-.-......+-- + .+...+ -.+|++++.|=.- ..+| |.+ .+++-..
T Consensus 101 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~la~al-~~~p~lllLDEPt----~gLD--p~~---~~~i~~~ 170 (210)
T cd03269 101 KKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV-IHDPELLILDEPF----SGLD--PVN---VELLKDV 170 (210)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCHHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCC--HHH---HHHHHHH
T ss_conf 9999999999999986997054880577899899999999999-5799899992886----6799--999---9999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99975307978999863036654331145787753027851
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
|..+ ++.+.+++++-|.-.+ ++.+.|-++.+.
T Consensus 171 i~~~-~~~g~til~ssH~l~e--------~~~~~d~i~vl~ 202 (210)
T cd03269 171 IREL-ARAGKTVILSTHQMEL--------VEELCDRVLLLN 202 (210)
T ss_pred HHHH-HHCCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf 9999-9689899998884899--------999699999998
No 300
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.48 E-value=0.0048 Score=41.77 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC-C--CCCC
Q ss_conf 663237812488886598578708999549875188999999999850398199998646304788887520-1--5775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL-N--TINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl-~--~~~~ 145 (479)
.+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||||+.+++.+. +.+-.|++.-||-..+ +....+.+ + ....
T Consensus 156 ~epL~TGIraID~ll--pigrGQRigIfagsGvGKs~Ll~~iar~~-~adv~Vi~lIGERgrE-v~efi~~~l~~~~~~r 231 (455)
T PRK07960 156 EHVLDTGVRAINALL--TVGRGQRMGLFAGSGVGKSVLLGMMARYT-RADVIVVGLIGERGRE-VKDFIENILGAEGRAR 231 (455)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHH-CCCEEEEEEECEEHHH-HHHHHHHHHCCCCCCC
T ss_conf 872326844440336--71478776324899884999999998860-8985899720406289-9999999751477421
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
.+.+....+ +. .+-+..-++.+--++++||+...
T Consensus 232 svvv~atsd~~p~~r~~aa~~a~aiAEyFrd~Gk~VLl~~DslTr~ 277 (455)
T PRK07960 232 SVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRY 277 (455)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 2799842666848888789999999999985587379997364788
No 301
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.0015 Score=45.45 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=27.3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 85787089995498751889999999998503
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYK 117 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~ 117 (479)
-+.+|.++.|.|+.|+|||||++.++.-+...
T Consensus 38 ~v~~GE~vaLvGeSGSGKSTl~~~l~gll~~~ 69 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLLEQA 69 (623)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98899899999899978999999997798788
No 302
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.0051 Score=41.59 Aligned_cols=134 Identities=17% Similarity=0.242 Sum_probs=68.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------ 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------ 153 (479)
-+.+| ++-+-|+-|+|||||+--++.-.....+ .+++.+.+....-..-..++|...++..++...
T Consensus 22 ~i~~G-i~gllGpNGAGKSTll~~i~Gl~~p~sG-~i~i~g~~~~~~~~~~~~~iG~vpq~~~l~~~ltv~e~l~~~~~l 99 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL 99 (211)
T ss_pred EECCC-EEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 88897-5999999982399999999759668962-999999996618898973079975777689898799999999998
Q ss_pred -------------------CHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -------------------88999-----------------999973169828997216876654204455636799999
Q gi|254780334|r 154 -------------------NVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS 197 (479)
Q Consensus 154 -------------------~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~ 197 (479)
++++. +.. .--.+|++++.|=.. ..+| |-+ .++.
T Consensus 100 ~g~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~ia~-al~~~P~lliLDEPt----~gLD--p~~---~~~~ 169 (211)
T cd03264 100 KGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQ-ALVGDPSILIVDEPT----AGLD--PEE---RIRF 169 (211)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCC----CCCC--HHH---HHHH
T ss_conf 59998999999999999869955855954458988999999999-982899999994897----6789--999---9999
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999975307978999863036654331145787753027851
Q gi|254780334|r 198 VQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 198 ~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-..|.+++ .+.+++++-|.-.+ +|.+.|.++.+.
T Consensus 170 ~~ll~~l~--~~~tii~stH~l~e--------~e~~~dri~il~ 203 (211)
T cd03264 170 RNLLSELG--EDRIVILSTHIVED--------VESLCNQVAVLN 203 (211)
T ss_pred HHHHHHHC--CCCEEEEECCCHHH--------HHHHCCEEEEEE
T ss_conf 99999972--99899998998899--------999699999998
No 303
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.47 E-value=0.0045 Score=41.94 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=28.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 85787089995498751889999999998503981999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITY 123 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY 123 (479)
-+.+|.++.|.|+-|+|||||+--++.-..-..+.+.|
T Consensus 23 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 60 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 98799899999999985999999997688888737999
No 304
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.47 E-value=0.0041 Score=42.26 Aligned_cols=138 Identities=21% Similarity=0.199 Sum_probs=69.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH------------------------HHHHH----
Q ss_conf 98578708999549875188999999999850398199998646304------------------------78888----
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG------------------------QIRLR---- 136 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~------------------------Qi~~R---- 136 (479)
=-+.+|.++.|.|+-|+|||||+--++.-+.-..+.+.+ .+..... .+...
T Consensus 32 f~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~~p~~G~I~~-~g~~~~~~~~~~~~~~~~~~~~l~~~lt~~enl~~~~~l~ 110 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI-DGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH 110 (214)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE-CCEECCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 898189899999999987999999997697788419999-9999975402135899801454468876999999998625
Q ss_pred -----------HHHCCCCCCCHHEECCCCHHH----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf -----------752015775100003478899----99999731698289972168766542044556367999999999
Q gi|254780334|r 137 -----------AQRLNTINSSVYIAIETNVED----IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 137 -----------a~Rl~~~~~~i~~~~e~~l~~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L 201 (479)
.+++++..-.-......+--+ .+..+ --.+|+++++|=-- ..+|. +-++....+
T Consensus 111 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA~a-l~~~p~illLDEPt----~~LD~------~~~~~l~~~ 179 (214)
T PRK13543 111 GRRAKQMPGSALAIVGLAGYEDALVRQLSAGQRKRLALARL-WLSPAPLWLLDEPY----ANLDL------EGITLVNRM 179 (214)
T ss_pred CCCHHHHHHHHHHHCCCCCHHCCCHHHCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCCH------HHHHHHHHH
T ss_conf 87799999999998699440007823489999999999999-85799999980998----88999------999999999
Q ss_pred HHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 99753079789998630366543311457877530278515
Q gi|254780334|r 202 IQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 202 ~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
.+..++.+.+++++-|- ...++-+.|-++.+++
T Consensus 180 l~~~~~~g~tvl~~tHd--------~~~~~~~adRi~~L~~ 212 (214)
T PRK13543 180 ISAHLRGGGAALVTTHG--------AYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEEC
T ss_conf 99998679999999199--------8999986999999808
No 305
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.0033 Score=42.99 Aligned_cols=135 Identities=16% Similarity=0.248 Sum_probs=67.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------ 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------ 153 (479)
-+.+|.++-|.|+.|+|||||+--++.-..-..+ -+++.++.- .....+...++....+..++...
T Consensus 26 ~i~~Ge~~~llGpsG~GKTTllr~iaGl~~p~~G-~I~~~g~~v-~~~~~~~R~i~~vfQ~~~L~p~ltV~eni~~~l~~ 103 (358)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG-EIWIGGRVV-NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKI 103 (358)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEEC-CCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9889989999999863699999999769998862-999999999-99997787576772555448787487866557876
Q ss_pred -------------------CHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH-
Q ss_conf -------------------8899-----------------999997316982899721687665420445563679999-
Q gi|254780334|r 154 -------------------NVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT- 196 (479)
Q Consensus 154 -------------------~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre- 196 (479)
.+.+ .++..+ -.+|++++.|=-- +.+| ...|.
T Consensus 104 ~~~~~~~~~~rv~~~l~~l~l~~~~~r~p~~LSGGq~QRvalARAL-~~~P~vlllDEP~----s~LD------~~~r~~ 172 (358)
T PRK11650 104 RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAI-VREPAVFLFDEPL----SNLD------AKLRVQ 172 (358)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC------HHHHHH
T ss_conf 2886467889999998752262422489747895678999983575-0499868873887----7679------989999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.-..|.++.++.++++++|-|- ......+.|.+.-+.
T Consensus 173 ~~~~l~~l~~~~g~T~i~vTHd--------~~eA~~laDri~vm~ 209 (358)
T PRK11650 173 MRLEIQRLHRRLGTTSLYVTHD--------QVEAMTLADRVVVMN 209 (358)
T ss_pred HHHHHHHHHHHHCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 9999999999759779999899--------999998699999998
No 306
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.002 Score=44.53 Aligned_cols=137 Identities=18% Similarity=0.319 Sum_probs=74.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC----CCEEEEECCC----CHHHH-HHHHHHCCCCCCC-H--------
Q ss_conf 857870899954987518899999999985039----8199998646----30478-8887520157751-0--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK----HRITYVSGEE----AIGQI-RLRAQRLNTINSS-V-------- 147 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g----~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~-i-------- 147 (479)
-+.+|.++-|.|+.|+|||||+..++.-+...+ +.+. +.+++ +..+. +.|..+++....+ .
T Consensus 29 ~i~~GEilgivGeSGsGKSTl~~~ilgll~~~~~~~~g~i~-~~g~dl~~~~~~~~~~~~g~~i~~vfQdp~~sLnP~~t 107 (327)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE-FNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYT 107 (327)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEE-ECCEECCCCCHHHHHHHHCCCEEEEECCCHHHCCHHHH
T ss_conf 98899999999999878999999997488989976542799-99999774999999986377669996085132074555
Q ss_pred -------------------------HEECCCCH---HH-----------------HHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf -------------------------00034788---99-----------------9999973169828997216876654
Q gi|254780334|r 148 -------------------------YIAIETNV---ED-----------------IIATLITNEKPDLVIIDSIQTLWSQ 182 (479)
Q Consensus 148 -------------------------~~~~e~~l---~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~ 182 (479)
.++....+ +. .++.. --.+|+++|.|=-.+...
T Consensus 108 v~~~i~e~l~~~~~~~~~~~~~r~~elL~~vgl~~~~~~l~~yP~eLSGGq~QRV~IArA-L~~~P~lLIaDEPTsaLD- 185 (327)
T PRK11022 108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMA-IACRPKLLIADEPTTALD- 185 (327)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCHHHHHHHHHHHH-HHHCCCEEEECCCCCCCC-
T ss_conf 557677788875278889999999999987158568889742855469999999999999-970999999838876579-
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 20445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 183 TAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 183 ~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
++--.++...|.++.++.++++++|-| .-.++.++.|.|.-+.
T Consensus 186 --------~~~q~~Il~ll~~l~~~~g~til~ITH--------Dl~~v~~~aDri~VMy 228 (327)
T PRK11022 186 --------VTIQAQIIELLLELQQKENMALVLITH--------DLALVAEAAHKIIVMY 228 (327)
T ss_pred --------HHHHHHHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHCCEEEEEE
T ss_conf --------999999999999999971994899928--------8999998699899998
No 307
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.0044 Score=42.02 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=66.8
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHH---
Q ss_conf 59857870899954987518899999999985039--8199998646304788887520157751000034788999---
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK--HRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDI--- 158 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g--~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i--- 158 (479)
..-+.+|.++.|.|+.|+|||||+--++. ....+ ..-+.+.+.+-....+. +.+....+........+.+.
T Consensus 27 s~~i~~Ge~~~llGpnGaGKSTLl~~l~g-~~~~~~~~G~i~~~g~~~~~~~~~---~igyv~q~~~~~~~~tv~e~l~~ 102 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAG-RKTAGVITGEILINGRPLDKNFQR---STGYVEQQDVHSPNLTVREALRF 102 (192)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC-CCCCCCEEEEEEECCEECCHHHHH---HEEEEECCHHCCCCCHHHHHHHH
T ss_conf 88992883999999999988999999837-987883178999878276677562---27999411330734549999986
Q ss_pred ----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf ----------------9999731698289972168766542044556367999999999997530797899986303665
Q gi|254780334|r 159 ----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG 222 (479)
Q Consensus 159 ----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G 222 (479)
++.. --.+|++++.|=.. ..+|. ...++....|.++++ .+.+++++-|-.
T Consensus 103 ~~~l~~LS~gqrqrv~iA~a-L~~~P~lllLDEPt----~gLD~-----~~~~~i~~~l~~l~~-~g~tiii~th~~--- 168 (192)
T cd03232 103 SALLRGLSVEQRKRLTIGVE-LAAKPSILFLDEPT----SGLDS-----QAAYNIVRFLKKLAD-SGQAILCTIHQP--- 168 (192)
T ss_pred HHHHHCCCHHHHHHHHHHHH-HHCCCCEEEEECCC----CCCCH-----HHHHHHHHHHHHHHH-CCCEEEEEECCC---
T ss_conf 67773379767658999999-84499889984887----68898-----999999999999996-999999998363---
Q ss_pred CCCCHHHHHHHHHEEEEEE
Q ss_conf 4331145787753027851
Q gi|254780334|r 223 QIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 223 ~iAGp~~LeH~VD~vl~~e 241 (479)
...+..+.|.++.++
T Consensus 169 ----~~~i~~~~Driivl~ 183 (192)
T cd03232 169 ----SASIFEKFDRLLLLK 183 (192)
T ss_pred ----HHHHHHHCCEEEEEC
T ss_conf ----799998799999997
No 308
>PRK07594 type III secretion system ATPase; Validated
Probab=97.46 E-value=0.01 Score=39.44 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=63.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCC
Q ss_conf 663237812488886598578708999549875188999999999850398199998646304788887520---15775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~ 145 (479)
.+-+.|||.-+|-++ =+.+|+=++|.|.+|+|||||+-+++.+ +..+ .++|+.--|.-..+..-.+.+ +....
T Consensus 136 ~epl~TGIkaID~l~--pigrGQR~gIfgg~GvGKTtLl~~i~~~-~~ad-v~V~~lIGERgrEv~efie~~~~~~~~~r 211 (433)
T PRK07594 136 TQPLMTGIRAIDSVA--TCGEGQRVGIFSAPGVGKSTLLAMLCNA-PDAD-SNVLVLIGERGREVREFIDFTLSEETRKR 211 (433)
T ss_pred CCCCCCCCEEHHCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHC-CCCC-CEEEEEECCCHHHHHHHHHHHHHCCCCCE
T ss_conf 861436740001357--7124787420478999855899999842-4798-15999941004889999998653366203
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
.+.+.+..+ +. .+-+...++.+--++++||+.-.
T Consensus 212 svvV~atsd~p~~~R~~a~~~a~aiAEyFrd~G~~VLl~~DslTR~ 257 (433)
T PRK07594 212 CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 8999955889999999998776678999986696489973438889
No 309
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.0055 Score=41.31 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=26.8
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
..+|+++|.|=..+. +| .. .++....+++-.|+.++++++|-|
T Consensus 159 ~~~p~lLilDEPt~~----LD-----~~-~~~~l~~~l~~l~~~g~til~isH 201 (513)
T PRK13549 159 NKQARLLILDEPTAS----LT-----ES-ETAILLDIIRDLKQHGIACIYISH 201 (513)
T ss_pred HCCCCEEEECCCCCC----CC-----HH-HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 529988640667578----88-----57-779999999998755967999945
No 310
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.46 E-value=0.0021 Score=44.38 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5985787089995498751889999999998
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASL 114 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~ 114 (479)
..-+.+|.++.|.|+.|+|||||+--++..+
T Consensus 27 s~~i~~Ge~~~ilGpnGsGKSTLl~~i~G~~ 57 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 7899188099999899960999999996789
No 311
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.46 E-value=0.0093 Score=39.66 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=65.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HCCC--CCC
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047888875-2015--775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ-RLNT--INS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~-Rl~~--~~~ 145 (479)
.+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||||+-+++.+.. .+..|+..-||-..+ ++.-.+ .++- ...
T Consensus 137 ~e~l~TGIraID~l~--tigkGQRigIf~gsGvGKs~Ll~~iar~~~-adv~V~~liGeR~rE-v~efie~~l~~~~l~r 212 (435)
T PRK07721 137 REKMEVGVRAIDSLL--TVGKGQRVGIFAGSGVGKSTLMGMIARQTS-ADLNVIALIGERGRE-VREFIERDLGEEGLKR 212 (435)
T ss_pred CCCCCCCCEEECCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHHC-CCEEEEEEECCCHHH-HHHHHHHHHCCCCCCC
T ss_conf 863037856522647--603575410026899878999999988744-882589993320289-9999997522155532
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 100003478---89---------999999731698289972168766
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLW 180 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~ 180 (479)
.+.+.+..+ +. .+-+..-++.+--++++||+....
T Consensus 213 svvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A 259 (435)
T PRK07721 213 SIVVVATSDQPALMRIKGAYTATAIAEYFRDKGQNVMLMMDSVTRVA 259 (435)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
T ss_conf 39999438899999999999988899999967997899516388999
No 312
>PRK10416 cell division protein FtsY; Provisional
Probab=97.45 E-value=0.0035 Score=42.75 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=61.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEE-CCCCHHHHHHHH--
Q ss_conf 708999549875188999999999850398199998646----3047888875201577510000-347889999999--
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIA-IETNVEDIIATL-- 162 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~-~e~~l~~il~~~-- 162 (479)
-.++|+.|--|+||||-.-.+|..+.++|++|+.+++.- ..+|++..++|.++.. +-- ...+-..+....
T Consensus 295 P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v~v---i~~~~g~Dpa~V~~dai~ 371 (499)
T PRK10416 295 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV---IAQHTGADSASVIFDAIQ 371 (499)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEE---EECCCCCCHHHHHHHHHH
T ss_conf 87999974787878989999999999779953788406675689999999842457369---836899997999999999
Q ss_pred -HHCCCCCEEEECHH
Q ss_conf -73169828997216
Q gi|254780334|r 163 -ITNEKPDLVIIDSI 176 (479)
Q Consensus 163 -i~~~~~~~vVIDSI 176 (479)
....+.|++|||.-
T Consensus 372 ~a~~~~~DvviiDTA 386 (499)
T PRK10416 372 AAKARNVDVLIADTA 386 (499)
T ss_pred HHHHCCCCEEEEECC
T ss_conf 999729998998577
No 313
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.45 E-value=0.0023 Score=44.04 Aligned_cols=135 Identities=15% Similarity=0.262 Sum_probs=70.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC------------
Q ss_conf 85787089995498751889999999998503981999986463047888875201577510000347------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET------------ 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~------------ 153 (479)
-+.+|.++-|.|+.|+|||||+--++.-. +...-.+++.++.-. ....+-.+++....+..+++..
T Consensus 22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~-~p~~G~I~~~g~~i~-~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~ 99 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIYIGGRDVT-DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECC-CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 98699899999999880999999997699-998639999999999-9997678878994587646547099999989998
Q ss_pred -------------------CHHH-----------------HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH-H
Q ss_conf -------------------8899-----------------99999731698289972168766542044556367999-9
Q gi|254780334|r 154 -------------------NVED-----------------IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR-T 196 (479)
Q Consensus 154 -------------------~l~~-----------------il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr-e 196 (479)
.+++ .++..+ -.+|++++.|=-- +.+| .+.| +
T Consensus 100 ~~~~~~e~~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl-~~~P~lLLlDEP~----saLD------~~~r~~ 168 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAI-VREPKVFLMDEPL----SNLD------AKLRVQ 168 (213)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC------HHHHHH
T ss_conf 5999899999999999875992465099556999999999999998-7599989983887----6429------899999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+-..|.++.++.++++++|-|--. ....+.|.++.+.
T Consensus 169 i~~~l~~~~~~~~~T~i~vTHd~~--------ea~~l~dri~vm~ 205 (213)
T cd03301 169 MRAELKRLQQRLGTTTIYVTHDQV--------EAMTMADRIAVMN 205 (213)
T ss_pred HHHHHHHHHHHHCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf 999999999974998999999989--------9999699899998
No 314
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.45 E-value=0.0013 Score=45.80 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=31.3
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 24888865985787089995498751889999999998503981999986
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
+-|+. +.=-+.+|+.+-|.|+.|+|||||+-=++.-..-..+. +++.|
T Consensus 355 ~vL~~-is~~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~-I~idG 402 (593)
T PRK10790 355 LVLKN-INLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDG 402 (593)
T ss_pred HHHHC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC-CCCCC
T ss_conf 01426-01044899789987999886899999999855678994-16599
No 315
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.45 E-value=0.0021 Score=44.45 Aligned_cols=117 Identities=21% Similarity=0.371 Sum_probs=66.8
Q ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHE-ECCCCHHHHHH
Q ss_conf 86598578708999549875188999999999850398199998646304788887520157751000-03478899999
Q gi|254780334|r 82 VTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYI-AIETNVEDIIA 160 (479)
Q Consensus 82 vLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~-~~e~~l~~il~ 160 (479)
-||+=+++| +|+.|+||+|||.|+-.+|.. .|-+.+++|+-|=.+ .|+ ..+..+.++.+
T Consensus 179 ~~Gak~PkG--vLL~GPPGtGKTlLAkAvAgE---a~vpF~~~sgsef~e---------------~~vGvga~rVR~lF~ 238 (644)
T PRK10733 179 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE---AKVPFFTISGSDFVE---------------MFVGVGASRVRDMFE 238 (644)
T ss_pred HCCCCCCCC--EEEECCCCCCHHHHHHHHHCC---CCCEEEEEEHHHHHH---------------EEEECCHHHHHHHHH
T ss_conf 749979985--177798998778999998645---598089978477302---------------225306899999999
Q ss_pred HHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 997316982899721687665420445563679999-----99999997530797899986303665
Q gi|254780334|r 161 TLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT-----SVQAMIQYAKKNGVAMVLVGHVTKEG 222 (479)
Q Consensus 161 ~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre-----~~~~L~~~AK~~~i~vilighvTK~G 222 (479)
. .++..|-+++||-|-++-...-.+. |+-...|+ ...++..+... -.+++++--|...
T Consensus 239 ~-Ar~~aP~IIFIDEiDaig~~R~~~~-~gg~~e~~~tlNqlL~EmDGf~~~--~~ViviaATNrpd 301 (644)
T PRK10733 239 Q-AKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPD 301 (644)
T ss_pred H-HHHCCCEEEEEECHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCC
T ss_conf 9-9966997999953220366678988-898328887899999995488887--8769996269975
No 316
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.44 E-value=0.0033 Score=42.93 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=9.1
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999999769989997
Q gi|254780334|r 415 RLKEAEKIGFLSGVF 429 (479)
Q Consensus 415 ri~eA~~~G~~~~ii 429 (479)
.+.+..+..|..+||
T Consensus 632 ~ll~~l~~~yD~IIi 646 (726)
T PRK09841 632 QLLEWANDHYDLVIV 646 (726)
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999813999999
No 317
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.44 E-value=0.0056 Score=41.29 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=64.8
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC----C----CCCCCH-HE
Q ss_conf 88886598578708999549875188999999999850398199998646304788887520----1----577510-00
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL----N----TINSSV-YI 149 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl----~----~~~~~i-~~ 149 (479)
|-+.|.. .....+++|.+|+|-||||++.|.+. .+.+|.++|.++.......-+..+ . ...... .+
T Consensus 22 L~~~L~~-~~~~~l~lv~APaG~GKTtl~a~w~~----~~~~~~Wlsld~~d~~~~~f~~~l~~al~~~~~~~~~~~~~~ 96 (903)
T PRK04841 22 LLAKLSG-ANNYRLVLVRSPAGYGKTTLASQWAA----GKNNVGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEAL 96 (903)
T ss_pred HHHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHC
T ss_conf 9999985-15899799977999889999999983----499859985885448999999999999998565433112311
Q ss_pred E---CCCCHHH----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 0---3478899----999997316982899721687665420445563679999999999975307978999863
Q gi|254780334|r 150 A---IETNVED----IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 150 ~---~e~~l~~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
. ...++.. ++..+.....|-.+|+|-.+.+.++. +.+....|.+.+- .++.++++.-
T Consensus 97 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvlDD~h~i~~~~----------~~~~l~~Ll~~~p-~~l~lvl~sR 160 (903)
T PRK04841 97 AEKRQYASLTSLFAQLFIELSDWHQPLYLVLDDYHLITNPE----------IHEAMRFFLRHQP-ENLTLVVLSR 160 (903)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH----------HHHHHHHHHHHCC-CCEEEEEEEC
T ss_conf 35566554999999999997558998699986836488868----------9999999998389-8838998768
No 318
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.43 E-value=0.0011 Score=46.46 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCEEEEECCC-----CHHH------------HHHHHHHCCC
Q ss_conf 8578708999549875188999999999850------398199998646-----3047------------8888752015
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAY------KKHRITYVSGEE-----AIGQ------------IRLRAQRLNT 142 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~------~g~~vlYvS~EE-----s~~Q------------i~~Ra~Rl~~ 142 (479)
-+.+|..+.|.|+.|+|||||+.-++..+.. -..++.|+.-+- +..+ +..-.+..++
T Consensus 27 ~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~~~~~G~I~~~g~i~~v~Q~~~l~~~Tv~eNi~~~~~~~~~~~~~~~~~~~l 106 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL 106 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 97699899999999985899999981895256895225898899958775677509999744686688999999999761
Q ss_pred CCCCHHE--------ECC--CCHH-----H-HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7751000--------034--7889-----9-9999973169828997216876654204455636799999999999753
Q gi|254780334|r 143 INSSVYI--------AIE--TNVE-----D-IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAK 206 (479)
Q Consensus 143 ~~~~i~~--------~~e--~~l~-----~-il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK 206 (479)
.. .+.. ..+ .++. - .++..+ -.+|++++.|=.- +.+|. .+ -+.....+....+
T Consensus 107 ~~-~~~~~~~~~~~~i~~~~~~LSgGQkQRvalARal-~~~~~illlDEPt----s~LD~----~~-~~~i~~~l~~~~~ 175 (204)
T cd03250 107 EP-DLEILPDGDLTEIGEKGINLSGGQKQRISLARAV-YSDADIYLLDDPL----SAVDA----HV-GRHIFENCILGLL 175 (204)
T ss_pred HH-HHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCC----CCCCH----HH-HHHHHHHHHHHHH
T ss_conf 98-8985135352452378875799999999999999-5399999996987----66699----99-9999999999986
Q ss_pred HCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 07978999863036654331145787753027851
Q gi|254780334|r 207 KNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 207 ~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+.+.++++|-|- ...+++ .|.|++++
T Consensus 176 ~~~~Tvi~itH~--------~~~~~~-~D~ii~l~ 201 (204)
T cd03250 176 LNNKTRILVTHQ--------LQLLPH-ADQIVVLD 201 (204)
T ss_pred HCCCEEEEECCC--------HHHHHH-CCEEEEEC
T ss_conf 089899998079--------999970-99999972
No 319
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.43 E-value=0.012 Score=38.76 Aligned_cols=107 Identities=20% Similarity=0.268 Sum_probs=64.1
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-CCC--CCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752-015--775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-LNT--INS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l~~--~~~ 145 (479)
.+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.+.. ..-.|...-||-. ..+..-.+. ++. ...
T Consensus 139 ~e~L~TGIraID~l~--pigrGQRigIfagsGvGKs~Ll~~i~r~~~-adv~VialIGeRg-rEv~efi~~~l~~~~l~r 214 (441)
T PRK08927 139 GPPLDLGVRALNTFL--TCCRGQRLGIFAGSGVGKSVLLSMLARNTD-ADVSVIGLIGERG-REVQEFLQDDLGPEGLAR 214 (441)
T ss_pred CCCCCCCHHHHHHHH--HHCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCH-HHHHHHHHHHHCCCCCCC
T ss_conf 763103601565330--020364666316899987899999986416-7737875226518-999999998720245224
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
.+.+.+..+ +. .+-+...++.+--++++||+...
T Consensus 215 svvV~atsd~p~~~R~~a~~~A~aiAEyfrd~G~~VLl~~Dsltr~ 260 (441)
T PRK08927 215 SVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (441)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 5899963789878879999875589999997799679983460288
No 320
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.42 E-value=0.00082 Score=47.37 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=25.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
=+.||+.+-|.|+.|+|||||+-=++.-..-..+ -+++.+.
T Consensus 345 ~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~p~~G-~I~idG~ 385 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGK 385 (547)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCE
T ss_conf 9859988999899999779999998289669998-6989999
No 321
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.42 E-value=0.0059 Score=41.11 Aligned_cols=165 Identities=14% Similarity=0.253 Sum_probs=85.1
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HCC-CCCCC
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047888875-201-57751
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ-RLN-TINSS 146 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~-Rl~-~~~~~ 146 (479)
.+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.+.. ..-.|...-||-. ..+..-.+ .++ .....
T Consensus 139 ~epl~TGIraID~l~--pigrGQR~gIf~g~GvGKt~Ll~~i~~~~~-~dv~V~~lIGeR~-rEv~efie~~~~~~l~~t 214 (435)
T PRK08472 139 DEVFSVGVKSIDGLL--TCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-APIKVVALIGERG-REIPEFIEKNLGGDLSNT 214 (435)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEECCCCCCCCCCHHHHHHHHHHC-CCEEEEEEECEEH-HHHHHHHHHHHHHCCCCE
T ss_conf 874115855774326--624776651235899983357888877615-9988997613122-789999998741132225
Q ss_pred HHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHHH---------HHH---CCCCCCHHHHHHHHHHHH
Q ss_conf 00003478---89---------9999997316982899721687665---------420---445563679999999999
Q gi|254780334|r 147 VYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLWS---------QTA---ESSPGTVIQVRTSVQAMI 202 (479)
Q Consensus 147 i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~~---------~~~---~s~~GsvsQvre~~~~L~ 202 (479)
+.+.+..+ +. .+-+...++.+--++++||+..... .+. .+.|+++. ....+|.
T Consensus 215 vvvvatsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYp~~vf---~~l~~l~ 291 (435)
T PRK08472 215 VIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVL---SLLPQLM 291 (435)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHHH
T ss_conf 9998468899899988888999999999867984899843627889999999986589997556383577---6657888
Q ss_pred HHH-HHC---CCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 975-307---9789998630366543311--45787753027851
Q gi|254780334|r 203 QYA-KKN---GVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 203 ~~A-K~~---~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~e 241 (479)
.-| +.. -||.|-+-. +..+.+..| ..+--+.|..++++
T Consensus 292 ERag~~~~~GSIT~i~~v~-~~gdD~~~pi~d~~~si~DG~ivLs 335 (435)
T PRK08472 292 ERAGKEEGKGSITAFFTVL-VEGDDMSDPIADQSRSILDGHIVLS 335 (435)
T ss_pred HHHCCCCCCCCEEEEEEEE-ECCCCCCCCCHHHHHHHCCEEEEEC
T ss_conf 8642588985148887785-0488767774555545406079997
No 322
>KOG0780 consensus
Probab=97.42 E-value=0.005 Score=41.65 Aligned_cols=148 Identities=24% Similarity=0.258 Sum_probs=94.8
Q ss_pred CCCHHHHHHHCCCCC-------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC----CCHHHHHHHHHHCCC
Q ss_conf 781248888659857-------870899954987518899999999985039819999864----630478888752015
Q gi|254780334|r 74 THIDELDRVTGGGFV-------RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE----EAIGQIRLRAQRLNT 142 (479)
Q Consensus 74 TGi~eLDrvLGGGl~-------~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E----Es~~Qi~~Ra~Rl~~ 142 (479)
.=+.||-.+++.|.. +-+++++.|=-|+||||.|-.+|....++|+++..+++. -...|++..|.+.++
T Consensus 78 ~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~i 157 (483)
T KOG0780 78 AVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARV 157 (483)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999718997646615689708999830578863008999999984687245776022453068999987674077
Q ss_pred CCCCHHEECCCCHHHHHHHH---HHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEEEE
Q ss_conf 77510000347889999999---73169828997216876654204455636799999999999753079-789998630
Q gi|254780334|r 143 INSSVYIAIETNVEDIIATL---ITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG-VAMVLVGHV 218 (479)
Q Consensus 143 ~~~~i~~~~e~~l~~il~~~---i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~-i~vilighv 218 (479)
+.-. -+.+.+--.|...- -.+.+.+++|+|.- |.-.|-.+...++.+.++..+ --+++|---
T Consensus 158 P~yg--syte~dpv~ia~egv~~fKke~fdvIIvDTS------------GRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDa 223 (483)
T KOG0780 158 PFYG--SYTEADPVKIASEGVDRFKKENFDVIIVDTS------------GRHKQEASLFEEMKQVSKAIKPDEIIFVMDA 223 (483)
T ss_pred EEEE--CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC------------CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 0684--0366555899999999888639728998278------------7301248999999999851598738999856
Q ss_pred CCCCCC--CCHHHHHHHHHE
Q ss_conf 366543--311457877530
Q gi|254780334|r 219 TKEGQI--AGPRVIEHMVDA 236 (479)
Q Consensus 219 TK~G~i--AGp~~LeH~VD~ 236 (479)
--|+- +-.+.-...||.
T Consensus 224 -siGQaae~Qa~aFk~~vdv 242 (483)
T KOG0780 224 -SIGQAAEAQARAFKETVDV 242 (483)
T ss_pred -CCCHHHHHHHHHHHHHHCC
T ss_conf -2007679999988776154
No 323
>CHL00176 ftsH cell division protein; Validated
Probab=97.42 E-value=0.0013 Score=45.98 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=51.6
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHH
Q ss_conf 65985787089995498751889999999998503981999986463047888875201577510000347889999999
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATL 162 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~ 162 (479)
||+=+++| +|+.||||+|||-|+-.+|.. .|-+.+|+||-|=.+... | .....+.++.+.
T Consensus 205 ~Gak~PkG--vLL~GpPGTGKTlLAkAvAgE---a~vpF~~~sgs~F~e~~v------G--------vga~rVR~LF~~- 264 (631)
T CHL00176 205 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGE---AEVPFFSISGSEFVEMFV------G--------VGAARVRDLFKK- 264 (631)
T ss_pred CCCCCCCE--EEEECCCCCCHHHHHHHHHCC---CCCCEEEEEHHHHHHHHC------C--------HHHHHHHHHHHH-
T ss_conf 49968965--898898998788999998565---588469988378556421------5--------558999999999-
Q ss_pred HHCCCCCEEEECHHHHHH
Q ss_conf 731698289972168766
Q gi|254780334|r 163 ITNEKPDLVIIDSIQTLW 180 (479)
Q Consensus 163 i~~~~~~~vVIDSIQtl~ 180 (479)
.++..|.+++||-|-++-
T Consensus 265 Ar~~aP~IiFIDEiDaig 282 (631)
T CHL00176 265 AKENSPCIVFIDEIDAVG 282 (631)
T ss_pred HHHCCCEEEEEEEEEEEE
T ss_conf 986399699987101201
No 324
>KOG0060 consensus
Probab=97.41 E-value=0.0029 Score=43.33 Aligned_cols=141 Identities=17% Similarity=0.273 Sum_probs=80.4
Q ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CC--------C--CCEEEEECC-----CCHH-HHHH---------
Q ss_conf 8659857870899954987518899999999985-03--------9--819999864-----6304-7888---------
Q gi|254780334|r 82 VTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YK--------K--HRITYVSGE-----EAIG-QIRL--------- 135 (479)
Q Consensus 82 vLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~--------g--~~vlYvS~E-----Es~~-Qi~~--------- 135 (479)
-|.=-++.|+..||+|+.|+|||+|+--++.-.- .+ + +.++|+--- -+.. |+-.
T Consensus 453 ~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~ 532 (659)
T KOG0060 453 NLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS 532 (659)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCHHHHEECCCCCCCCCC
T ss_conf 10057058975999789987636899998532516787276056788775588368877666544550332575322101
Q ss_pred -------------------HHHHCCCCC-----CCHHEECCCCHHHH-HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC
Q ss_conf -------------------875201577-----51000034788999-99997316982899721687665420445563
Q gi|254780334|r 136 -------------------RAQRLNTIN-----SSVYIAIETNVEDI-IATLITNEKPDLVIIDSIQTLWSQTAESSPGT 190 (479)
Q Consensus 136 -------------------Ra~Rl~~~~-----~~i~~~~e~~l~~i-l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gs 190 (479)
-.+|.|-.. +..-+++.-..+-+ .+. .--.+|++.|.|--....+.
T Consensus 533 ~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~AR-Lfy~kPk~AiLDE~TSAv~~-------- 603 (659)
T KOG0060 533 KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFAR-LFYHKPKFAILDECTSAVTE-------- 603 (659)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHCCHHHHHHHHHHH-HHHCCCCEEEEECCHHHCCH--------
T ss_conf 377678999999985455589985788822220577636988888999999-98608836876030222357--------
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCC
Q ss_conf 6799999999999753079789998630366543311457877530278515556
Q gi|254780334|r 191 VIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTR 245 (479)
Q Consensus 191 vsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~ 245 (479)
+.-.++-+.+.+.+|+.|-|||- +.|+.--|.+|++.|+..
T Consensus 604 -----dvE~~~Yr~~r~~giT~iSVgHR---------kSL~kfHd~~L~~~g~g~ 644 (659)
T KOG0060 604 -----DVEGALYRKCREMGITFISVGHR---------KSLWKFHDYVLRMDGRGS 644 (659)
T ss_pred -----HHHHHHHHHHHHCCCEEEEECCH---------HHHHHHHHEEEEECCCCC
T ss_conf -----67999999999809769996357---------889865417999658886
No 325
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=97.41 E-value=0.00028 Score=50.81 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=33.5
Q ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8659857870899954987518899999999985039819999864
Q gi|254780334|r 82 VTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 82 vLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-|||=+|+| +||.||||+|||-||-.+|..+ +-+..-+||=
T Consensus 86 ~LGaKIPKG--VLLvGPPGTGKTLLAKAvAGEA---~VPFF~iSGS 126 (505)
T TIGR01241 86 KLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGS 126 (505)
T ss_pred HCCCCCCCC--EEEECCCCCCHHHHHHHHHCCC---CCCCEEECCC
T ss_conf 727889871--4731787842467887520258---8962474076
No 326
>PHA02518 ParA-like protein; Provisional
Probab=97.41 E-value=0.00082 Score=47.37 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=44.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECC--CCHHHHHHHHHHCCCCCEE
Q ss_conf 99549875188999999999850398199998646304788887520157751000034--7889999999731698289
Q gi|254780334|r 94 LVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIE--TNVEDIIATLITNEKPDLV 171 (479)
Q Consensus 94 Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e--~~l~~il~~~i~~~~~~~v 171 (479)
+..--=|+||||++.++|..++++|++|+.+...--.. .....+.-. ..+......+ .++..-+.. ...++|.+
T Consensus 5 v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s-~~~w~~~r~-~~~~~~~~~~~~~~~~~~l~~--~~~~yD~v 80 (211)
T PHA02518 5 VLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGS-STDWAEARE-EGEPLIPVVRMGKSIRADLPK--VASGYDYV 80 (211)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHCC-CCCCCCCHHHCCHHHHHHHHH--HCCCCCEE
T ss_conf 98089997499999999999997899489997799967-889998522-689974012136779999997--40678889
Q ss_pred EECHH
Q ss_conf 97216
Q gi|254780334|r 172 IIDSI 176 (479)
Q Consensus 172 VIDSI 176 (479)
|||.-
T Consensus 81 iID~p 85 (211)
T PHA02518 81 VVDGA 85 (211)
T ss_pred EECCC
T ss_conf 98899
No 327
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.41 E-value=0.002 Score=44.48 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=26.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
=+.||+.+-|.|+.|+|||||+-=++.-..-.. -.+.+.+.
T Consensus 363 ~i~~Ge~vaiVG~SGsGKSTL~~LL~r~ydp~~-G~I~idG~ 403 (575)
T PRK11160 363 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ-GEILLNGQ 403 (575)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCE
T ss_conf 976998899988999759999999862367899-88999989
No 328
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.40 E-value=0.0052 Score=41.53 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=81.1
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHH
Q ss_conf 88865985787089995498751889999999998503981999986463047888875201577510000347889999
Q gi|254780334|r 80 DRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDII 159 (479)
Q Consensus 80 DrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il 159 (479)
-+.|-.-+-.+..++|+|..|+|||||+-.++..+......-=.++-|++.+- ...... .-..+...+.++.+++
T Consensus 139 a~~L~~~V~~r~nilI~G~TgsGKTTll~all~~i~~~~p~eRivtIED~~EL-~~~~~n----~v~~~~~~~vt~~~Ll 213 (320)
T PRK13894 139 REAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI-QCAAEN----YVQYHTSIDVNMTALL 213 (320)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHH-CCCCCC----EEEEECCCCCCHHHHH
T ss_conf 99999999728758998588865689999998632026952017752587880-787777----3576447886899999
Q ss_pred HHHHHCCCCCEEEECHHH-----HHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHH
Q ss_conf 999731698289972168-----7665420445563679-----999999999975307978999863036654331145
Q gi|254780334|r 160 ATLITNEKPDLVIIDSIQ-----TLWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRV 229 (479)
Q Consensus 160 ~~~i~~~~~~~vVIDSIQ-----tl~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~ 229 (479)
.... ..+||.+|+-=+. .++..--.+.+|+.+- .++...+|..+++..... ...+ .+.
T Consensus 214 ~~aL-R~rPDRIivGEvRg~Ea~~~l~A~nTGH~Gs~tTiHA~sa~~al~Rl~~l~~~~~~~---------~~~v--~~~ 281 (320)
T PRK13894 214 KTTL-RMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAKAGLDRLAMLISMHPDS---------PKPI--EPL 281 (320)
T ss_pred HHHH-CCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCC---------HHHH--HHH
T ss_conf 9973-679985876654748999999999669987205346799999999999998636787---------8999--999
Q ss_pred HHHHHHEEEEEE
Q ss_conf 787753027851
Q gi|254780334|r 230 IEHMVDAVLYFE 241 (479)
Q Consensus 230 LeH~VD~vl~~e 241 (479)
+-..||.|+|++
T Consensus 282 ia~avdvVV~i~ 293 (320)
T PRK13894 282 IGEAVHVVVHIA 293 (320)
T ss_pred HHHHCCEEEEEE
T ss_conf 998689999998
No 329
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0021 Score=44.34 Aligned_cols=137 Identities=15% Similarity=0.297 Sum_probs=70.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHH-HHHHHHCCCCCCCHHEECCCC-HHHH-
Q ss_conf 8578708999549875188999999999850398199998646----30478-888752015775100003478-8999-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQI-RLRAQRLNTINSSVYIAIETN-VEDI- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~i~~~~e~~-l~~i- 158 (479)
=+.+|.++.|.|+.|+|||||+--++. +-....--+|+.+++ +..+. ..|-.+++....+.-+++... .+++
T Consensus 50 ~I~~GEi~~ivG~SGsGKSTLlr~i~g-L~~Pt~G~I~i~G~di~~~~~~~l~~~rrr~igmVFQ~~aL~P~~TV~eNi~ 128 (400)
T PRK10070 50 AIEEGEIFVIMGLSGSGKSTMVRLLNR-LIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTA 128 (400)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHH
T ss_conf 887999999999998469999999975-9998981899999999989978987651465599957974143888888787
Q ss_pred ----------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----------------------------------------------9999731698289972168766542044556367
Q gi|254780334|r 159 ----------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 159 ----------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
++..+ ..+|++++.|=--+. +|. ..
T Consensus 129 ~~l~~~~~~~~e~~~ra~e~L~~VgL~~~~~~yP~eLSGGqqQRVaiARAL-a~~P~iLL~DEP~SA----LDp----~~ 199 (400)
T PRK10070 129 FGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARAL-AINPDILLMDEAFSA----LDP----LI 199 (400)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEEECCCCC----CCH----HH
T ss_conf 899984999899999999999974990242189344899999999999998-629999997087654----598----99
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-.+.-..|.++.++.+.++++|-|--. .--.+.|-+..+.
T Consensus 200 -r~~i~~~l~~L~~~~~~TiifVTHDl~--------eA~~laDRIaVM~ 239 (400)
T PRK10070 200 -RTEMQDELVKLQAKHQRTIVFISHDLD--------EAMRIGDRIAIMQ 239 (400)
T ss_pred -HHHHHHHHHHHHHHHCCEEEEECCCHH--------HHHHHCCEEEEEE
T ss_conf -999999999999985999999899999--------9998699999998
No 330
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.40 E-value=0.011 Score=39.21 Aligned_cols=164 Identities=18% Similarity=0.270 Sum_probs=82.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHHC-C-CCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999-8646304788887520-1-5775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYV-SGEEAIGQIRLRAQRL-N-TINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYv-S~EEs~~Qi~~Ra~Rl-~-~~~~ 145 (479)
.+.+.|||.-+|-++ =+.+|+=.+|.|..|+|||||+-+++.+.. . ..++|. -||-.. .++.-.+.. + ....
T Consensus 146 ~epL~TGIkaID~l~--pigrGQR~gIfgg~GvGKTtLl~~i~~~~~-~-d~vV~~lIGeRgr-Ev~ef~e~~l~~~l~~ 220 (450)
T PRK06002 146 DTPLRTGVRVIDIFT--PLCAGQRIGIFAGSGVGKSTLLAMLARADA-F-DTVVVALVGERGR-EVREFLEDTLADHLSK 220 (450)
T ss_pred CCCCCCCHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCC-C-CEEEEEEEEEEHH-HHHHHHHHHHHCCCCE
T ss_conf 876631031334214--601487777426899987599999986258-9-8799998647489-9999999876422000
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHH---------HHH---HCCCCCCHHHHHHHHHHH
Q ss_conf 100003478---89---------999999731698289972168766---------542---044556367999999999
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLW---------SQT---AESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~---------~~~---~~s~~GsvsQvre~~~~L 201 (479)
.+.+....+ +. .+-+..-++.+--++++||+.... ..+ ..+.|+++. ....+|
T Consensus 221 svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~r~gYp~~vf---~~l~~L 297 (450)
T PRK06002 221 AVAVVATGDESPMMRRLAPKTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVF---SELPRL 297 (450)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHH
T ss_conf 59997058898288765565544379999967996799982617888899999987589997567783277---660688
Q ss_pred HHHH-H-H---CCCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 9975-3-0---79789998630366543311--45787753027851
Q gi|254780334|r 202 IQYA-K-K---NGVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~~A-K-~---~~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~e 241 (479)
..-| + . -.||.|-+- .+..+.+..| ..+--+.|..++++
T Consensus 298 lERag~~~~~~GSITal~~V-~~~~dD~~~pI~d~~~silDGhIvLs 343 (450)
T PRK06002 298 LERAGPGAEGGGSITGIFSV-LVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred HHHHCCCCCCCCCEEEEEEE-EECCCCCCCCHHHHHHHHCCEEEEEC
T ss_conf 87622577787306888888-71388767757887867735499984
No 331
>PRK08149 ATP synthase SpaL; Validated
Probab=97.40 E-value=0.0052 Score=41.50 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=62.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH---CCCCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752---015775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR---LNTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R---l~~~~~ 145 (479)
.+-+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+-+++.+. ..+-.|+..-||-.. .+..-.+. -+....
T Consensus 131 ~e~l~TGIraID~l~--pigkGQR~gIf~gsGvGKs~Ll~~i~~~~-~adv~Via~IGeRgr-Ev~efi~~~~~~~~l~r 206 (427)
T PRK08149 131 REPLITGVRAIDGLL--TCGVGQRMGIFASAGCGKTMLMNMLIEHT-EADVFVIGLIGERGR-EVTEFVEMLRASHKKEK 206 (427)
T ss_pred CCCEECCCEEECCCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEEECCCHH-HHHHHHHHHHCCCCCCE
T ss_conf 850003864310445--32467540002789986779999888635-899899997023378-99999997503685203
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
.+.+.+..+ +. .+-+...++.+--++++||+...
T Consensus 207 svvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 252 (427)
T PRK08149 207 CVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRY 252 (427)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 6899715889989999999887789999986798379961757888
No 332
>KOG1969 consensus
Probab=97.39 E-value=0.0021 Score=44.35 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=42.6
Q ss_pred HHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHH
Q ss_conf 248888659-857870899954987518899999999985039819999--86463047888875
Q gi|254780334|r 77 DELDRVTGG-GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYV--SGEEAIGQIRLRAQ 138 (479)
Q Consensus 77 ~eLDrvLGG-Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYv--S~EEs~~Qi~~Ra~ 138 (479)
+-||.-++- +-++--+.|+.|+||.|||||+.-+|.+. |++|+=+ |-|-+...++.|-+
T Consensus 312 e~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~kI~ 373 (877)
T KOG1969 312 EVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKEKIE 373 (877)
T ss_pred HHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCCHHHHHHHHH
T ss_conf 556324686679840068753688787247999999862---85488732555434788999999
No 333
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.0014 Score=45.76 Aligned_cols=126 Identities=21% Similarity=0.241 Sum_probs=69.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCE
Q ss_conf 08999549875188999999999850398199998646304788887520157751000034788999999973169828
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDL 170 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~ 170 (479)
-+++++|.||+||||++-+++..+.+++..+.-++..-+ ..-...+.+++..+. +.|.-.+.....+....+-.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~--~~i~~DEslpi~ke~---yres~~ks~~rlldSalkn~~ 76 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL--RGILWDESLPILKEV---YRESFLKSVERLLDSALKNYL 76 (261)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH--HHEECCCCCCHHHHH---HHHHHHHHHHHHHHHHHCCEE
T ss_conf 569982699988017899999999972001121320145--412331324037999---999998889999999863649
Q ss_pred EEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC----------CCCCCHHHHHHHHHE
Q ss_conf 997216876654204455636799999999999753079789998630366----------543311457877530
Q gi|254780334|r 171 VIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKE----------GQIAGPRVIEHMVDA 236 (479)
Q Consensus 171 vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~----------G~iAGp~~LeH~VD~ 236 (479)
||+|+.. .+.| .| ..|.-.||+.+++..+|.--+-. |+---+-+|+.|.|-
T Consensus 77 VIvDdtN-----Yyks-------mR---rqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~R 137 (261)
T COG4088 77 VIVDDTN-----YYKS-------MR---RQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDR 137 (261)
T ss_pred EEEECCC-----HHHH-------HH---HHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9970632-----8889-------99---999999986378659999726889998860247999989999999996
No 334
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.39 E-value=0.009 Score=39.78 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=66.7
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-CCC--CC
Q ss_conf 666323781248888659857870899954987518899999999985039819999864630478888752-015--77
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-LNT--IN 144 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l~~--~~ 144 (479)
..+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.+. ..+-.|+..-||-..+ ++.-.+. ++. ..
T Consensus 117 i~e~l~TGIraID~l~--pigrGQRigIfag~GvGKt~Ll~~ia~~~-~adv~Vi~liGERgrE-v~ef~~~~l~~~~l~ 192 (413)
T TIGR03497 117 IRDPLETGIKAIDGLL--TIGKGQRVGIFAGSGVGKSTLLGMIARNA-KADINVIALIGERGRE-VRDFIEKDLGEEGLK 192 (413)
T ss_pred CCCEEECCCEEECCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHH-CCCCCEEEEEEEECHH-HHHHHHHHHCCCCCC
T ss_conf 8834203865421657--61137544210589987769999999874-3785238886332289-999999863125642
Q ss_pred CCHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 5100003478---89---------99999973169828997216876
Q gi|254780334|r 145 SSVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 145 ~~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
..+.+.+..+ +. .+-+...++.+--++++||+...
T Consensus 193 rtvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~ 239 (413)
T TIGR03497 193 RSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 15999845878879998877463278999986799689997371298
No 335
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.006 Score=41.03 Aligned_cols=139 Identities=20% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-C---------------CCEEEEECCC--------CHHHHHH--HH-
Q ss_conf 985787089995498751889999999998503-9---------------8199998646--------3047888--87-
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-K---------------HRITYVSGEE--------AIGQIRL--RA- 137 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g---------------~~vlYvS~EE--------s~~Qi~~--Ra- 137 (479)
--+.+|+++.|.||=|.|||||+--++.-+.-. | .++-|+-=-. +..++.+ |.
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 99748968999999888889999999678767742699836663334667769975761026767996799998606754
Q ss_pred --------------------HHCCCCC---CCHHEECCCCHHH-HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf --------------------5201577---5100003478899-999997316982899721687665420445563679
Q gi|254780334|r 138 --------------------QRLNTIN---SSVYIAIETNVED-IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 138 --------------------~Rl~~~~---~~i~~~~e~~l~~-il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
+|.++.. ..+.-++--..+- .++.++ -.+|+++++|=--+ .+|. .+
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL-~~~p~lllLDEP~~----gvD~----~~- 174 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL-AQNPDLLLLDEPFT----GVDV----AG- 174 (254)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHH-CCCCCEEEECCCCC----CCCH----HH-
T ss_conf 46601366677799999999983926664795554672799999999985-36999899668754----5798----78-
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 9999999999753079789998630366543311457877530278515
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
..+...-|.++.++ |+++++|-| ....+.+.+|.|+++..
T Consensus 175 ~~~i~~lL~~l~~e-g~tIl~vtH--------DL~~v~~~~D~vi~Ln~ 214 (254)
T COG1121 175 QKEIYDLLKELRQE-GKTVLMVTH--------DLGLVMAYFDRVICLNR 214 (254)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEC--------CCHHHHHHCCEEEEECC
T ss_conf 99999999999878-988999958--------81776853887999857
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.0032 Score=43.06 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=26.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 85787089995498751889999999998503
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYK 117 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~ 117 (479)
-+.+|..+.|.|+-|+|||||+--++..+...
T Consensus 23 ~I~~Ge~vgLVG~NGsGKSTLlklL~G~~~~d 54 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISAD 54 (638)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 99899899998899988999999980899888
No 337
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.38 E-value=0.0099 Score=39.45 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 857870899954987518899999999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAA 112 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~ 112 (479)
=+.+|.++-|.|+.|+|||||+--++.
T Consensus 28 ~i~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 28 SINAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 887998999999999999999999727
No 338
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.37 E-value=0.0095 Score=39.60 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=64.1
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCCC
Q ss_conf 63237812488886598578708999549875188999999999850398199998646304788887520---157751
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINSS 146 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~~ 146 (479)
+-+.|||.-+|-++ =+.+|+=+.|.|.+|+|||||+-+++.+... . .++|..--|.-..++.-.+.+ +.....
T Consensus 145 epl~TGIraID~l~--pigrGQR~gIf~gsGvGKstLl~~iar~~~~-d-v~V~~lIGeRgrEv~efi~~~~~~~~l~~s 220 (441)
T PRK09099 145 APLPTGVRIVDGLM--TLGEGQRMGIFAPAGVGKSTLMGMFARGTQC-D-VNVIALIGERGREVREFIELILGEDGMARS 220 (441)
T ss_pred CCCCCCCEEECCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-C-CEEEEECCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 74127856223667--8034763300158988789999989875136-8-616886372138999999997624563201
Q ss_pred HHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 00003478---89---------99999973169828997216876
Q gi|254780334|r 147 VYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 147 i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
+.+....+ +. .+-+...++.+--++++||+...
T Consensus 221 vvv~atsd~~~~~R~~a~~~a~aiAEyfrd~Gk~VLl~~DslTr~ 265 (441)
T PRK09099 221 VVVCATSDRSSIERAKAAYAATAIAEYFRDRGKRVLLMMDSLTRF 265 (441)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 798615889988999987750157889986698189970767799
No 339
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.37 E-value=0.0024 Score=43.92 Aligned_cols=131 Identities=24% Similarity=0.308 Sum_probs=81.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC-CCCHHHHHHHHHHC
Q ss_conf 57870899954987518899999999985039819999864630478888752015775100003-47889999999731
Q gi|254780334|r 87 FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI-ETNVEDIIATLITN 165 (479)
Q Consensus 87 l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~-e~~l~~il~~~i~~ 165 (479)
..+-..+++.|+-.+|||||+.-++..+..+|.++.|++..=....+- . ...+.+.. .....+ +.+ -
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~-------p-Pg~ISL~~~~s~~~~-L~~---l 137 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIG-------P-PGFISLAFPESPVIS-LSE---L 137 (398)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-------C-CCEEEEECCCCCCCC-HHH---C
T ss_conf 068738999898676788999999988764474189996899976667-------9-746774125677777-777---5
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHH---HHHHE-----E
Q ss_conf 698289972168766542044556367999999999997530797899986303665433114578---77530-----2
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIE---HMVDA-----V 237 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~Le---H~VD~-----v 237 (479)
..+....+-|| +..+...+.-.|+.+|..+||+. .-++ -++.+|-+-|-..++ |++|+ |
T Consensus 138 ~~~~~~FvG~i---------sP~~~~~~~i~~v~rL~~~a~~~-~~~i---lIdT~GWi~G~~g~elk~~li~~ikP~~I 204 (398)
T COG1341 138 EPFTLYFVGSI---------SPQGFPGRYIAGVARLVDLAKKE-ADFI---LIDTDGWIKGWGGLELKRALIDAIKPDLI 204 (398)
T ss_pred CCCCEEEEECC---------CCCCCHHHHHHHHHHHHHHHHCC-CCEE---EECCCCCEECCHHHHHHHHHHHHCCCCEE
T ss_conf 86522798514---------77777689999999999986516-8779---99699843074278999998865097789
Q ss_pred EEEEC
Q ss_conf 78515
Q gi|254780334|r 238 LYFEG 242 (479)
Q Consensus 238 l~~eg 242 (479)
++|+-
T Consensus 205 i~l~~ 209 (398)
T COG1341 205 IALER 209 (398)
T ss_pred EEECC
T ss_conf 99314
No 340
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.37 E-value=0.0085 Score=39.94 Aligned_cols=138 Identities=21% Similarity=0.282 Sum_probs=70.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC--CCHHHH-HHHH------------------------H
Q ss_conf 857870899954987518899999999985039819999864--630478-8887------------------------5
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE--EAIGQI-RLRA------------------------Q 138 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E--Es~~Qi-~~Ra------------------------~ 138 (479)
-+.+|...=|.|+.|+|||||+--++.-..-.++.+.|...+ .+.... .+|. +
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 76388789998899999899999994877888844999276556552314552420379996762336700069999874
Q ss_pred HCCCCCCCHHEECCCCHHHH---------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf 20157751000034788999---------------------------999973169828997216876654204455636
Q gi|254780334|r 139 RLNTINSSVYIAIETNVEDI---------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 139 Rl~~~~~~i~~~~e~~l~~i---------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
.+.+....-.-.....+.++ ++.. -..+|+++|-|-.-. .+ .+
T Consensus 393 pL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARA-La~~P~lli~DEp~S----aL-----Dv 462 (539)
T COG1123 393 PLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARA-LALEPKLLILDEPVS----AL-----DV 462 (539)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHH-HHCCCCEEEECCCCC----CC-----CH
T ss_conf 786506651678999999999871999789713860038525678999999-854998999648743----22-----78
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 79999999999975307978999863036654331145787753027851
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+--..+.+-|.++-++.+++.++|-| .--+++++.|.|..+.
T Consensus 463 svqa~VlnLl~~lq~e~g~t~lfISH--------Dl~vV~~i~drv~vm~ 504 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLTYLFISH--------DLAVVRYIADRVAVMY 504 (539)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEC--------CHHHHHHHCCEEEEEE
T ss_conf 99999999999999974988999958--------7899986386689997
No 341
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=97.37 E-value=0.016 Score=37.88 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=89.7
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH---CCC-
Q ss_conf 5666323781248888659857870899954987518899999999985039819999864630478888752---015-
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR---LNT- 142 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R---l~~- 142 (479)
...+-+.||+.-+|-++ =+.+|+-.+|-|+.|+|||+|+.+++.+ +. ..-++|+.--|....+..-.+. |..
T Consensus 136 ~~~~PL~TGir~ID~l~--Pig~Gqr~~I~g~~g~GKT~l~~~i~k~-~~-~dv~Vyv~iGeRg~ev~e~l~~f~el~~~ 211 (369)
T cd01134 136 PPNEPLLTGQRVLDTLF--PVVKGGTAAIPGPFGCGKTVIQQSLSKY-SN-SDIVIYVGCGERGNEMTEVLEEFPELTDP 211 (369)
T ss_pred CCCCCHHHHHHHHHHHC--CCCCCCEEEEECCCCCCHHHHHHHHHHC-CC-CCEEEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 99986265356887425--3214764677668776899999999853-79-98899999711418999999986774133
Q ss_pred ------CCCCHHEECCCCHH------------HHHHHHHHCCCCCEEEECHHHHHH---------HHHH---CCCCCCHH
Q ss_conf ------77510000347889------------999999731698289972168766---------5420---44556367
Q gi|254780334|r 143 ------INSSVYIAIETNVE------------DIIATLITNEKPDLVIIDSIQTLW---------SQTA---ESSPGTVI 192 (479)
Q Consensus 143 ------~~~~i~~~~e~~l~------------~il~~~i~~~~~~~vVIDSIQtl~---------~~~~---~s~~Gsvs 192 (479)
....+.+.+..+.. .+-+..-+..+.-+++.||+.-.. ..+. .+.|+++.
T Consensus 212 ~~g~~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l~e~P~~egYP~~l~ 291 (369)
T cd01134 212 VTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLG 291 (369)
T ss_pred CCCCCHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 34664102036874277799889988898999999999968988799807589999998899886389987657193199
Q ss_pred HHHHHHHHHHHHH-H-------HCCCEEEEEEEE-CCCCCCCCHH--HHHHHHHEEEEEEC
Q ss_conf 9999999999975-3-------079789998630-3665433114--57877530278515
Q gi|254780334|r 193 QVRTSVQAMIQYA-K-------KNGVAMVLVGHV-TKEGQIAGPR--VIEHMVDAVLYFEG 242 (479)
Q Consensus 193 Qvre~~~~L~~~A-K-------~~~i~vilighv-TK~G~iAGp~--~LeH~VD~vl~~eg 242 (479)
....+|..-| + ...-.+-.++-| +..|.+..|- .+--++|.-++++-
T Consensus 292 ---s~l~~l~ERag~~~~~~~~~~~GSiT~~~~V~~~ggD~s~pI~~~~~si~d~~i~L~~ 349 (369)
T cd01134 292 ---ARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDK 349 (369)
T ss_pred ---HHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCEEEEECH
T ss_conf ---8888998721443236899998117789899756988677578888766215889858
No 342
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.00069 Score=47.93 Aligned_cols=122 Identities=23% Similarity=0.352 Sum_probs=72.4
Q ss_pred CCCCCCCHH-HHHHHCCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCC-----CCCEEEEECCCC--------HHHHH
Q ss_conf 632378124-88886598578708-9995498751889999999998503-----981999986463--------04788
Q gi|254780334|r 70 SRIQTHIDE-LDRVTGGGFVRGSV-ILVGGDPGIGKSTLLMQTAASLAYK-----KHRITYVSGEEA--------IGQIR 134 (479)
Q Consensus 70 ~Ri~TGi~e-LDrvLGGGl~~Gs~-~Li~G~PGvGKSTL~Lqia~~~a~~-----g~~vlYvS~EEs--------~~Qi~ 134 (479)
-|-.+|..+ |=.-| +..|.+ +|+-|+|++|||||+-.+|..++-. ..+|..+. |-| ..|.
T Consensus 118 ~r~v~Gt~~~li~~l---y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiD-ersEIag~~~gvpq~- 192 (308)
T COG3854 118 ARQVFGTANPLIKDL---YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIID-ERSEIAGCLNGVPQH- 192 (308)
T ss_pred HHHHHCCCHHHHHHH---HHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEE-CCCHHHCCCCCCCHH-
T ss_conf 145655621889999---843722469965998870779999999863151126773289971-500430343588603-
Q ss_pred HHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 88752015775100003478899999997316982899721687665420445563679999999999975307978999
Q gi|254780334|r 135 LRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVL 214 (479)
Q Consensus 135 ~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vil 214 (479)
.|+.|+.+... +-.-+.+ -+.+++..|+++|+|-|-|... +...+ -|-+.++-++-
T Consensus 193 ~~g~R~dVld~------cpk~~gm-mmaIrsm~PEViIvDEIGt~~d---------------~~A~~--ta~~~GVkli~ 248 (308)
T COG3854 193 GRGRRMDVLDP------CPKAEGM-MMAIRSMSPEVIIVDEIGTEED---------------ALAIL--TALHAGVKLIT 248 (308)
T ss_pred HHHHHHHHCCC------CHHHHHH-HHHHHHCCCCEEEEECCCCHHH---------------HHHHH--HHHHCCCEEEE
T ss_conf 23221010465------6178889-9999954995799834364777---------------99999--99854858999
Q ss_pred EEEECC
Q ss_conf 863036
Q gi|254780334|r 215 VGHVTK 220 (479)
Q Consensus 215 ighvTK 220 (479)
..|-+.
T Consensus 249 TaHG~~ 254 (308)
T COG3854 249 TAHGNG 254 (308)
T ss_pred EECCCC
T ss_conf 504411
No 343
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0013 Score=45.79 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=66.6
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC-----------
Q ss_conf 488886598578708999549875188999999999850398199998646304788887520157751-----------
Q gi|254780334|r 78 ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS----------- 146 (479)
Q Consensus 78 eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~----------- 146 (479)
-||.+ .=-+.+|.++-|.|+.|+|||||+--++.-. +...--+++.++.-. .....-.+++....+
T Consensus 34 al~~v-sl~I~~GE~~~llGpsGsGKSTllr~i~Gl~-~p~~G~I~i~G~di~-~~~~~~r~ig~vfQ~~~L~p~ltV~e 110 (377)
T PRK11607 34 AVDDV-SLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPSAGQIMLDGVDLS-HVPPYQRPINMMFQSYALFPHMTVEQ 110 (377)
T ss_pred EECCC-EEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECC-CCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99051-8799999899999999848999999997699-998659999999988-79866665046701265587757545
Q ss_pred -HHE-------------------ECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf -000-------------------034788999-----------------9999731698289972168766542044556
Q gi|254780334|r 147 -VYI-------------------AIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 147 -i~~-------------------~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
+.+ +....+++. ++..+ -.+|++++.|=-- +.+|
T Consensus 111 Ni~~~l~~~~~~~~e~~~rv~e~l~~v~L~~~~~~~p~~LSGGqrQRVaiArAL-~~~P~lLllDEPt----s~LD---- 181 (377)
T PRK11607 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL-AKRPKLLLLDEPM----GALD---- 181 (377)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCC----
T ss_conf 245478665999899999999998544627666589657898687899999987-4499789964875----4479----
Q ss_pred CHHHHHH-HHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 3679999-9999999753079789998630
Q gi|254780334|r 190 TVIQVRT-SVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 190 svsQvre-~~~~L~~~AK~~~i~vilighv 218 (479)
.+.|+ .-..|.++.++.++++++|-|-
T Consensus 182 --~~~r~~l~~~l~~l~~~~g~Tii~VTHD 209 (377)
T PRK11607 182 --KKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred --HHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf --9999999999999999739999999989
No 344
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.36 E-value=0.0055 Score=41.33 Aligned_cols=143 Identities=19% Similarity=0.273 Sum_probs=73.8
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-------------H-HHHHHHHHHCCCC
Q ss_conf 4888865985787089995498751889999999998503981999986463-------------0-4788887520157
Q gi|254780334|r 78 ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-------------I-GQIRLRAQRLNTI 143 (479)
Q Consensus 78 eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-------------~-~Qi~~Ra~Rl~~~ 143 (479)
.||.+ .=-+.+|.++-|.|+.|+|||||+--++.-+.-..+.+ ++.++-+ . +.+.....-.+..
T Consensus 39 AL~dV-sf~i~~GEivgllG~NGaGKSTLlk~I~Gl~~P~~G~I-~~~G~i~~~~~~~~l~~~lt~~eni~~~~~~~g~~ 116 (264)
T PRK13546 39 ALDDI-SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV-DRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred EECCC-EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEEEEEEECCCCCCCCEEEHHHHHHHHHCCCC
T ss_conf 95270-78885998999998998619999999967988887479-99988748850356574430001588899872424
Q ss_pred CCCHH-----EECCCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 75100-----0034788999-----------------9999731698289972168766542044556367999999999
Q gi|254780334|r 144 NSSVY-----IAIETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 144 ~~~i~-----~~~e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L 201 (479)
..... ++...++.+. ++. .--.+|+++++|=.-+ . ..+...+++...+
T Consensus 117 ~~~~~~~~~~~le~~~l~~~~~~~~~~LSgGqkqrl~lA~-al~~~P~iLiLDEPts----~-----LD~~~~~~i~~~i 186 (264)
T PRK13546 117 RKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSI-NITVNPDILVIDEALS----V-----GDQTFAQKCLDKI 186 (264)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCCC----C-----CCHHHHHHHHHHH
T ss_conf 9999999999998512055651755347999999999999-9956999999959875----4-----8999999999999
Q ss_pred HHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9975307978999863036654331145787753027851
Q gi|254780334|r 202 IQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.++ ++.+.+++++-|. ...++.+.|-++.+.
T Consensus 187 ~~l-~~~g~TiilvSH~--------l~~v~~lcDri~vl~ 217 (264)
T PRK13546 187 YEF-KEQNKTIFFVSHN--------LGQVRQFCTKIAWIE 217 (264)
T ss_pred HHH-HHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 999-9689899998487--------899998699999998
No 345
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.36 E-value=0.0067 Score=40.69 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=29.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 85787089995498751889999999998503981999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITY 123 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY 123 (479)
-+.+|.++.|.|+-|+|||||+--++.-..-..+.++|
T Consensus 23 ~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p~~G~I~~ 60 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 98799799998899987999999997785889856999
No 346
>PRK13542 consensus
Probab=97.36 E-value=0.0059 Score=41.10 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6564031333455666323781248888659857870899954987518899999999985039819999864
Q gi|254780334|r 55 SISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 55 ~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
+.++..+.++...-. +-.-||. +.=-+.+|.++.|.|+-|+|||||+--++.-+.-..+. +|+.++
T Consensus 15 ~~PlLe~~~ls~~~g-----~~~il~~-isl~i~~Gei~~liGpNGaGKTTLlk~l~Gll~p~~G~-I~~~G~ 80 (224)
T PRK13542 15 ADPVLEARELGFSRG-----GRAVFRG-IDISLAPGDLLQVMGPNGSGKTSLLRVLSGLMPPAEGD-LYWRGR 80 (224)
T ss_pred CCCEEEEEEEEEEEC-----CEEEEEC-CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCE
T ss_conf 774799962699999-----9998846-16787599799999999999999999995797888528-999999
No 347
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.36 E-value=0.0049 Score=41.67 Aligned_cols=142 Identities=15% Similarity=0.291 Sum_probs=80.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH-HHHHHHCCCCCC-CHHEECCCCHHHHHHHHHH
Q ss_conf 57870899954987518899999999985039819999864630478-888752015775-1000034788999999973
Q gi|254780334|r 87 FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQI-RLRAQRLNTINS-SVYIAIETNVEDIIATLIT 164 (479)
Q Consensus 87 l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi-~~Ra~Rl~~~~~-~i~~~~e~~l~~il~~~i~ 164 (479)
+-.+..++|+|..|+|||||+-.++..+.. .++++- -|++.+-. .....+..+... .-.-..+.++.++++...
T Consensus 157 V~~r~NilI~G~TgSGKTTll~aL~~~ip~-~eRiit--IEDt~EL~l~~~pn~v~l~~~~~~~g~~~vt~~~Ll~~aL- 232 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPA-IERLIT--VEDAREIVLSSHPNRVHLLASKGGQGRAKVTTQDLIEACL- 232 (332)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHCCCC-CCCEEE--ECCCHHHCCCCCCCEEEEEECCCCCCCCEECHHHHHHHHH-
T ss_conf 864871999888898899999999835895-353566--3140663566688889999716888866086999999975-
Q ss_pred CCCCCEEEECHHH-----HHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 1698289972168-----7665420445563679-----99999999997530797899986303665433114578775
Q gi|254780334|r 165 NEKPDLVIIDSIQ-----TLWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMV 234 (479)
Q Consensus 165 ~~~~~~vVIDSIQ-----tl~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~V 234 (479)
...||.+|+--+. .++..--.+.+|+++- .++...+|..++++.+.. ++.+- =.+.+-..+
T Consensus 233 R~rPDRIivGEvRG~EA~~~l~A~nTGH~Gs~tTiHA~sa~~a~~Rl~~l~~~~~~~------~~~~~---i~~~i~~ai 303 (332)
T PRK13900 233 RLRPDRIIVGELRGAEAFSFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLG------MPPDQ---IKKYILNVV 303 (332)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCC------CCHHH---HHHHHHHHC
T ss_conf 689975844555719999999999769997114627899999999999999851689------89999---999999858
Q ss_pred HEEEEEE
Q ss_conf 3027851
Q gi|254780334|r 235 DAVLYFE 241 (479)
Q Consensus 235 D~vl~~e 241 (479)
|.|+|++
T Consensus 304 DvVV~~~ 310 (332)
T PRK13900 304 DIVVQLK 310 (332)
T ss_pred CEEEEEE
T ss_conf 9999998
No 348
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.35 E-value=0.018 Score=37.50 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=65.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCC--CCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752015--7751
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNT--INSS 146 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~--~~~~ 146 (479)
.+.+.||+.-+|-++ =+.+|+=++|.|.+|+|||||+.+++.+. +.+-.|+..-||-..+-...--+-++- ....
T Consensus 137 ~e~l~TGIraID~l~--pigrGQR~gIfg~sGvGKstLl~~i~~~~-~adv~Vi~lIGeRgrEv~efi~~~l~~~gl~~t 213 (432)
T PRK06793 137 TDVFETGIKSIDSML--TIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGERGREVKDFIRKELGEEGMRKS 213 (432)
T ss_pred CCCCCCCCCHHHHCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHC-CCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCE
T ss_conf 874004873100015--61246266663268987899999998724-578657999888627999999998644675212
Q ss_pred HHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 00003478---89---------99999973169828997216876
Q gi|254780334|r 147 VYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 147 i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
+.+.+..+ +. .+-+...++.+--++++||+...
T Consensus 214 vvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~ 258 (432)
T PRK06793 214 VVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 788725889989999887551237889986699689994567888
No 349
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.35 E-value=0.016 Score=37.92 Aligned_cols=59 Identities=8% Similarity=0.222 Sum_probs=39.8
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 6982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.+|++++.|=.. +.+| +...++....|.+++++.+++++++-|- ......+.|.|+.+.
T Consensus 169 ~~P~iLllDEPt----a~LD-----p~~~~~i~~~l~~l~~~~g~Til~vtHd--------l~~a~~~~Dri~vl~ 227 (262)
T PRK09984 169 QQAKVILADEPI----ASLD-----PESARIVMDTLRDINQNDGITVVVTLHQ--------VDYALRYCERIVALR 227 (262)
T ss_pred CCCCEEEECCCC----CCCC-----HHHHHHHHHHHHHHHHHCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 199999983886----7799-----9999999999999998549799998889--------899999699999996
No 350
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.35 E-value=0.0011 Score=46.50 Aligned_cols=98 Identities=24% Similarity=0.323 Sum_probs=62.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEE--CCCCHHHHHHHHHHC--CC
Q ss_conf 89995498751889999999998503981999986463047888875201577510000--347889999999731--69
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIA--IETNVEDIIATLITN--EK 167 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~--~e~~l~~il~~~i~~--~~ 167 (479)
+++++|-|++||||.+.|+...+.+++.+|.+++ ||+..- ..+. |-. .|..+-..+...++. .+
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~-d~~~~~----------~~~~-y~~s~~Ek~~R~~l~s~v~r~Ls~ 68 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEEKGYDVIVIS-DESLGI----------ESDD-YKDSKKEKFLRGSLRSAVKRDLSK 68 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC-CCCCCC----------CCCC-CCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9798579999688999999999997599389978-001267----------5310-001047899999999999875166
Q ss_pred CCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8289972168766542044556367999999999997530797899986
Q gi|254780334|r 168 PDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 168 ~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
.++||+||.. .+.| -|+ +|--.||..+++...|.
T Consensus 69 ~~iVIlD~~N-----YiKG-------~RY---EL~C~Ak~~~t~~c~v~ 102 (266)
T pfam08433 69 NTIVIVDSLN-----YIKG-------FRY---ELYCIAKEAKTTYCVVY 102 (266)
T ss_pred CCEEEECCCC-----CHHH-------HHH---HHHHHHHHCCCCEEEEE
T ss_conf 8889954874-----0456-------899---99999986388848999
No 351
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=97.34 E-value=0.0011 Score=46.29 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=46.2
Q ss_pred CCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 564031333455666323781248888659857870899954987518899999999985039819999864
Q gi|254780334|r 56 ISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 56 ~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
.+|.+++-...+ +=++||+.-+|=+|. .=.|+=+=|.+.||+|||||+-+||.+. +..-.|+=.=||
T Consensus 123 ~pP~P~~R~~I~--~PL~tGvRaiDGlLT--cG~GQRiGIFA~aG~GKSTLL~~i~~g~-~ADv~V~ALIGE 189 (430)
T TIGR02546 123 DPPPPMSRQPID--QPLPTGVRAIDGLLT--CGEGQRIGIFAGAGVGKSTLLGMIARGA-SADVNVIALIGE 189 (430)
T ss_pred CCCCCCCCCCCC--CCCHHHHHHHHHHHH--CCCCCEEEEEECCCCCHHHHHHHHHCCC-CCCEEEEEECCC
T ss_conf 810487675334--651014667543440--3665305787088861668999986189-887899860278
No 352
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.34 E-value=0.0031 Score=43.13 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=28.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 85787089995498751889999999998503981999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITY 123 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY 123 (479)
-+.+|.++-|.|+.|+|||||+--++.-.....+.+.|
T Consensus 24 ~i~~GE~~~llGpSGsGKSTLlr~iaGL~~p~sG~I~~ 61 (352)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61 (352)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99999899999999846999999997699999569999
No 353
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.34 E-value=0.0033 Score=42.96 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=65.2
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC----CC-----CCCHHEECC-
Q ss_conf 65985787089995498751889999999998503981999986463047888875201----57-----751000034-
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLN----TI-----NSSVYIAIE- 152 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~----~~-----~~~i~~~~e- 152 (479)
+.=-+.+|+++.|.|+-|+|||||+--++.-.....+.+ |+.+.+.....+.....++ .. .+++.+..+
T Consensus 19 isl~i~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p~~G~I-~~~~~~~~~~~~~~~~~i~~~~~l~~~ltv~enl~~~~~~ 97 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI-YYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI 97 (195)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCEEHHHHCHHHCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 777877997999999999819999999967988984089-9999992032463536635534678777699999999986
Q ss_pred -------------CCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf -------------788999-----------------99997316982899721687665420445563679999999999
Q gi|254780334|r 153 -------------TNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMI 202 (479)
Q Consensus 153 -------------~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~ 202 (479)
..+++. ++. .-..+|++++.|=.- +.+| ..-++....+.
T Consensus 98 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~iAr-al~~~p~llllDEPt----~~LD------~~~~~~i~~li 166 (195)
T PRK13541 98 YNSVETLYAAIHYFKLHDLLDEKCYSLSSGMQKVVALAR-LIACQSDLWLLDEVE----TNLS------KENRDLLNNLI 166 (195)
T ss_pred CCHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHH-HHHHCCCEEEEECCC----CCCC------HHHHHHHHHHH
T ss_conf 283999999999849875664866459999999999999-997099999997876----5599------99999999999
Q ss_pred HHHHHCCCEEEEEEEECCC
Q ss_conf 9753079789998630366
Q gi|254780334|r 203 QYAKKNGVAMVLVGHVTKE 221 (479)
Q Consensus 203 ~~AK~~~i~vilighvTK~ 221 (479)
...++.+.+++++.|...+
T Consensus 167 ~~~~~~g~~ili~sH~~~~ 185 (195)
T PRK13541 167 VMKANSGGIVLLSSHLESS 185 (195)
T ss_pred HHHHHCCCEEEEECCCHHH
T ss_conf 9998399999998379899
No 354
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=97.33 E-value=0.0073 Score=40.43 Aligned_cols=170 Identities=15% Similarity=0.228 Sum_probs=102.2
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH---HHHHCCCCCCC
Q ss_conf 632378124888865985787089995498751889999999998503981999986463047888---87520157751
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL---RAQRLNTINSS 146 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~---Ra~Rl~~~~~~ 146 (479)
+-+.|||.-.|-++ =+-+|+=-||-|+.++|||+++++..-+-...+-.|+|+.--+-.+.+.. +.+.-+...-.
T Consensus 125 ePLqTGIkaID~mi--PIGRGQRELIiGDrqTGKTaIAldtIiNQk~~~V~cIYVAIGQK~s~Va~iv~~L~~~gAm~yT 202 (507)
T PRK07165 125 EQLYTGIVAIDLLI--PIGKGQRELIIGDRQTGKTHIALNTIINQKNRNVKCIYVAIGQKRENLSRIYETLKEHDALKNT 202 (507)
T ss_pred CHHHHHHHHHHCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHE
T ss_conf 61343467876135--5567616777357887788999999984546895899998310177999999999877975652
Q ss_pred HHEECCCC--HH---------HHHHHHHHCCCCCEEEECHHHHHH---------H---HHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 00003478--89---------999999731698289972168766---------5---4204455636799999999999
Q gi|254780334|r 147 VYIAIETN--VE---------DIIATLITNEKPDLVIIDSIQTLW---------S---QTAESSPGTVIQVRTSVQAMIQ 203 (479)
Q Consensus 147 i~~~~e~~--l~---------~il~~~i~~~~~~~vVIDSIQtl~---------~---~~~~s~~GsvsQvre~~~~L~~ 203 (479)
+.+.+..+ .. .+-+. ....+.-++|.|++.... . +.-++.||.+.-++ .+|..
T Consensus 203 iVV~A~sd~p~~qylAPy~g~aiAEy-f~~~~dvLiiyDDLTkhA~AyReisLll~rPPGReayPgdvFy~h---srLLE 278 (507)
T PRK07165 203 IIIDAPSTSSYEQYLAPYVAMAHAEN-ISYNDDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDIFFAH---SKLLE 278 (507)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH---HHHHH
T ss_conf 57631577827777788888878898-864685699964768999999988987279999778996057661---68888
Q ss_pred H-HH---HCCCEEEEEEEECCCCCCCC--HHHHHHHHHEEEEEECCCCC
Q ss_conf 7-53---07978999863036654331--14578775302785155566
Q gi|254780334|r 204 Y-AK---KNGVAMVLVGHVTKEGQIAG--PRVIEHMVDAVLYFEGGTRN 246 (479)
Q Consensus 204 ~-AK---~~~i~vilighvTK~G~iAG--p~~LeH~VD~vl~~ege~~~ 246 (479)
- +| ..-+|.+=|- -|..|.+.. |..+--+.|.-++++.+-+.
T Consensus 279 Ra~kl~g~gSiTaLPIi-eT~~gDisayIpTNviSITDGQI~l~~~Lf~ 326 (507)
T PRK07165 279 RAGKFKNRKSITALPIL-QTVDNDITSLISSNIISITDGQIVTSSELFA 326 (507)
T ss_pred HHHHCCCCCEEEEEEEE-EECCCCCCCCCCCCEEEECCCEEEECHHHHH
T ss_conf 87612699615760178-7027862243566447741762885176774
No 355
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.009 Score=39.76 Aligned_cols=133 Identities=14% Similarity=0.223 Sum_probs=73.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCC--------------CCCH
Q ss_conf 8578708999549875188999999999850398199998646----304788887520157--------------7510
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTI--------------NSSV 147 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~--------------~~~i 147 (479)
-+.+|.++-|.|+-|+|||||+-.++.-.....+. +++.+++ +..+.. |.++. .+++
T Consensus 27 ~v~~Gei~~liGpnGaGKSTL~~~i~Gl~~p~~G~-I~~~G~~i~~~~~~~~~----r~g~~~~~q~~~l~~~ltv~enl 101 (255)
T PRK11300 27 EVREQEVVSLIGPNGAGKTTVFNCLTGFYKPTGGT-ILLDGQHIEGLPGHQIA----RMGVVRTFQHVRLFKEMTVIENL 101 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE-EEECCEECCCCCHHHHH----HCCCEEECCCCCCCCCCCHHHHH
T ss_conf 98999799999899964999999996798898608-99999988879999998----66825532230027786487776
Q ss_pred HEE----------------------------------CCCCHHH-----------------HHHHHHHCCCCCEEEECHH
Q ss_conf 000----------------------------------3478899-----------------9999973169828997216
Q gi|254780334|r 148 YIA----------------------------------IETNVED-----------------IIATLITNEKPDLVIIDSI 176 (479)
Q Consensus 148 ~~~----------------------------------~e~~l~~-----------------il~~~i~~~~~~~vVIDSI 176 (479)
.+. ...++.+ .++.. --.+|++++.|=.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~Qrv~iAra-L~~~P~lLlLDEP 180 (255)
T PRK11300 102 LVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARC-MVTQPRILMLDEP 180 (255)
T ss_pred HHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCHHHHHHHHHHH-HHHCCCEEEECCC
T ss_conf 555442022003433212520106689999999999997699213158846679488999999999-9729996998187
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 87665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 177 QTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 177 Qtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
. ..+| +...+++...+.++.+++++++++|-|- ...++.+.|.|+.+.
T Consensus 181 t----~gLD-----~~~~~~i~~~i~~l~~~~g~tvl~itHd--------l~~v~~~aDrv~vl~ 228 (255)
T PRK11300 181 A----AGLN-----PKETKELDELIAELRNEHNVTVLLIEHD--------MKLVMGISDRIYVVN 228 (255)
T ss_pred C----CCCC-----HHHHHHHHHHHHHHHHCCCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 5----4699-----9999999999999997159799999273--------899998699999999
No 356
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.32 E-value=0.0079 Score=40.19 Aligned_cols=106 Identities=21% Similarity=0.274 Sum_probs=63.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHH-CCC--CC
Q ss_conf 663237812488886598578708999549875188999999999850398199998-64630478888752-015--77
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVS-GEEAIGQIRLRAQR-LNT--IN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS-~EEs~~Qi~~Ra~R-l~~--~~ 144 (479)
.+.+.|||.-+|-++- +.+|+=+.|.|.+|+|||||+.+++.+.. .+ -++|.. ||-. ..++.-.++ ++- ..
T Consensus 143 ~epl~TGIraID~llt--~g~GQR~gIfagsGvGKs~Ll~~i~r~~~-ad-v~V~alIGERg-rEv~efie~~l~~~gl~ 217 (439)
T PRK06936 143 ETPLSLGVRVIDGLLT--CGEGQRMGIFAAAGGGKSTLLASLIRSAE-VD-VTVLALIGERG-REVREFIESDLGEEGLR 217 (439)
T ss_pred CCCCCCCCEEEECCCC--HHCCCEEECCCCCCCCHHHHHHHHHHHHC-CC-CEEEEEECCCH-HHHHHHHHHHHHCCCCC
T ss_conf 8742268555524686--31057010236999988999999976432-69-57999807308-99999999864125431
Q ss_pred CCHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 5100003478---89---------99999973169828997216876
Q gi|254780334|r 145 SSVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 145 ~~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
..+.+....+ +. .+-+..-++.+--++++||+...
T Consensus 218 rsvvV~atsd~p~~~R~~aa~~a~aiAEyFrd~G~~VLl~~DslTR~ 264 (439)
T PRK06936 218 KAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 06999618989989999999887788999985898489993567899
No 357
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=97.31 E-value=0.0052 Score=41.48 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=70.0
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHH
Q ss_conf 24888865985787089995498751889999999998503981999986463047888875201577510000347889
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVE 156 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~ 156 (479)
.-|++++.- --+.-.+=|+|+||+|||||.-.+...+..+|++|..+...-|-..- .-.-|-
T Consensus 17 ~ll~~~~~~-~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~s-----------------gGaiLG 78 (267)
T pfam03308 17 ELLRRLMPL-TGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFT-----------------GGSILG 78 (267)
T ss_pred HHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----------------CCCCCC
T ss_conf 999998743-59955998768998879999999999999689868999978999888-----------------863001
Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHE
Q ss_conf 99999973169828997216876654204455636799999999999753079789998630366543311457877530
Q gi|254780334|r 157 DIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDA 236 (479)
Q Consensus 157 ~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~ 236 (479)
|-+.+ .+...-.-+.|-|..+ .+..|.++ ..+...+.+++..+.-+++|--|-- =..--.+..|+|+
T Consensus 79 Dr~RM-~~~~~~~~vfiRs~~s------rg~lGGls---~~t~~~i~lleaaGfD~IivETVGV---GQsE~~v~~~aD~ 145 (267)
T pfam03308 79 DRTRM-QRLAVDPGAFIRSSPS------RGALGGLS---RATREAILLLDAAGFDVIIIETVGV---GQSEVDIANMADT 145 (267)
T ss_pred CHHHH-HHHCCCCCEEEEECCC------CCCCCCCC---HHHHHHHHHHHHCCCCEEEEECCCC---CCCCHHHHHHCCE
T ss_conf 07777-6505899858864577------88888714---7699999999977999999924777---7530355541576
Q ss_pred EEEEE
Q ss_conf 27851
Q gi|254780334|r 237 VLYFE 241 (479)
Q Consensus 237 vl~~e 241 (479)
++.+.
T Consensus 146 ~llv~ 150 (267)
T pfam03308 146 FVLVT 150 (267)
T ss_pred EEEEE
T ss_conf 89995
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.31 E-value=0.0017 Score=45.13 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=74.4
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC--------CCCCCCHH-E
Q ss_conf 88886598578708999549875188999999999850398199998646304788887520--------15775100-0
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL--------NTINSSVY-I 149 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl--------~~~~~~i~-~ 149 (479)
+|++..| .-..+++|..|.|.|||||+-|++. .+..+-.|.++|..|+..+...-+.+| .-..++.. +
T Consensus 28 ~~~L~~~--~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l 104 (894)
T COG2909 28 LDRLRRA--NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTL 104 (894)
T ss_pred HHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 9998607--7843899867887758899999998-647655435764577667889999999999987472324789999
Q ss_pred EC-------CCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 03-------47889999999731698289972168766542044556367999999999997530797
Q gi|254780334|r 150 AI-------ETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGV 210 (479)
Q Consensus 150 ~~-------e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i 210 (479)
.. +.-++.++..+.+..+|-.+|+|--.-+..+. +.+|...|.+.+-++-+
T Consensus 105 ~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~----------l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 105 LQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPA----------LHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC----------HHHHHHHHHHHCCCCEE
T ss_conf 87335565999999999998751496499953532257602----------89999999971998749
No 359
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.30 E-value=0.0016 Score=45.26 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=39.0
Q ss_pred CCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 64031333455666323781248888659857870899954987518899999999985
Q gi|254780334|r 57 SLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA 115 (479)
Q Consensus 57 ~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a 115 (479)
+|..++|+-.++.. +..|-..+..|-.|- .|+.||||+||||+++-+|..+-
T Consensus 10 RP~~~~dvvGq~~i-----~~~L~~~~~~~~~ph--lLf~GPpG~GKTt~A~~lA~~l~ 61 (337)
T PRK12402 10 RPSLFEDILGQESV-----VDHLSALAASGNLPH--LVVYGPSGSGKTAAVRALARELY 61 (337)
T ss_pred CCCCHHHHCCCHHH-----HHHHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 88979980397999-----999999997799876--98889298489999999999967
No 360
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.30 E-value=0.0051 Score=41.56 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 857870899954987518899999999985
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLA 115 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a 115 (479)
-+.+|..+.|.|+-|+|||||+--++....
T Consensus 25 ~I~~Ge~vgLVG~NGsGKSTLl~iL~G~~~ 54 (632)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTLMKILSGEVL 54 (632)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998998999999999879999999838998
No 361
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.011 Score=39.16 Aligned_cols=138 Identities=24% Similarity=0.334 Sum_probs=78.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC---------------HHHHHHHHHHCCCCCCCHH--
Q ss_conf 85787089995498751889999999998503981999986463---------------0478888752015775100--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA---------------IGQIRLRAQRLNTINSSVY-- 148 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs---------------~~Qi~~Ra~Rl~~~~~~i~-- 148 (479)
=+.+|..+=|.|.+|.|||||+-=++.... ...--+.+.+.=+ .+-+.+++.-+|.....+.
T Consensus 49 ~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~lG~~~~ei~~~ 127 (249)
T COG1134 49 EIYKGERVGIIGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK 127 (249)
T ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 860798998987899858999999958717-9882599814670564415677854205878999999846669999988
Q ss_pred -----EECC-------------CCHHHHHHH-HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf -----0034-------------788999999-973169828997216876654204455636799999999999753079
Q gi|254780334|r 149 -----IAIE-------------TNVEDIIAT-LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG 209 (479)
Q Consensus 149 -----~~~e-------------~~l~~il~~-~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~ 209 (479)
-++| ..+..-+.. .....+|+.+++|-+=.+ |...=.+-|..++..+.++.
T Consensus 128 ~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav---------GD~~F~~K~~~rl~e~~~~~- 197 (249)
T COG1134 128 VDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV---------GDAAFQEKCLERLNELVEKN- 197 (249)
T ss_pred HHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHC---------CCHHHHHHHHHHHHHHHHCC-
T ss_conf 89999998778876174411258899998887533137878998613440---------77999999999999999759-
Q ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 789998630366543311457877530278515
Q gi|254780334|r 210 VAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 210 i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
.+++++.| ....+....|.+++|+.
T Consensus 198 ~tiv~VSH--------d~~~I~~~Cd~~i~l~~ 222 (249)
T COG1134 198 KTIVLVSH--------DLGAIKQYCDRAIWLEH 222 (249)
T ss_pred CEEEEEEC--------CHHHHHHHCCEEEEEEC
T ss_conf 87999978--------87999985670599858
No 362
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=97.29 E-value=0.0045 Score=41.95 Aligned_cols=133 Identities=24% Similarity=0.344 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--CCCCC------EEEEECCCCHHHHH----HHH--
Q ss_conf 23781248888659857870899954987518899999999985--03981------99998646304788----887--
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA--YKKHR------ITYVSGEEAIGQIR----LRA-- 137 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a--~~g~~------vlYvS~EEs~~Qi~----~Ra-- 137 (479)
+++|-..|..+ .==+.||.++-|-|+.|+|||||+-.+=.=.. +...- -.++.++| ..+.+ .|-
T Consensus 11 Y~~g~~~LK~i-nl~i~~GE~~~~IG~SGAGKSTLLR~iNrL~~Gdk~~~Geilidf~i~~~g~~-i~~~~~~k~LR~~R 88 (253)
T TIGR02315 11 YPNGKQALKNI-NLEINPGEFVAVIGPSGAGKSTLLRCINRLVEGDKPSSGEILIDFSILLEGTD-ITKLRRGKKLRKLR 88 (253)
T ss_pred ECCCCEEEEEE-CCEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCH-HHHHHHHHHHHHHH
T ss_conf 17983788531-14341651799973788726799987753026888876508988888872731-87675488999997
Q ss_pred HHCCCCCCCH---------------------------HEECCC------------CHHHH-----------------HHH
Q ss_conf 5201577510---------------------------000347------------88999-----------------999
Q gi|254780334|r 138 QRLNTINSSV---------------------------YIAIET------------NVEDI-----------------IAT 161 (479)
Q Consensus 138 ~Rl~~~~~~i---------------------------~~~~e~------------~l~~i-----------------l~~ 161 (479)
.+++....+. ..+++. ++.+. ++.
T Consensus 89 ~~igMIFQ~yNLi~R~~VL~NVL~GRLg~~~~~~~~~~~F~~~dk~~Al~~L~rVGl~~~A~~RaD~LSGGQQQRVaIAR 168 (253)
T TIGR02315 89 RKIGMIFQHYNLIERLTVLENVLHGRLGYKSTWRSLLGRFSEEDKERALSLLERVGLADKAYQRADQLSGGQQQRVAIAR 168 (253)
T ss_pred HHHCCEEHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 64350110102378303667642143214503455632589989999998765238788986521321585116899998
Q ss_pred HHHCCCCCEEEEC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9731698289972-1687665420445563679999999999975307978999863
Q gi|254780334|r 162 LITNEKPDLVIID-SIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 162 ~i~~~~~~~vVID-SIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
++.. +|+++.-| +|. .+| |-+-.||. ..|.+++|+.|||+++-=|
T Consensus 169 AL~Q-~P~lILADEPiA-----SLD--P~~s~~VM---d~lk~In~e~GIT~i~NLH 214 (253)
T TIGR02315 169 ALAQ-QPKLILADEPIA-----SLD--PKTSKQVM---DYLKRINKEDGITVIVNLH 214 (253)
T ss_pred HHCC-CCCEEEECCCCC-----CCC--HHHHHHHH---HHHHHHHHHCCCEEEEECC
T ss_conf 6368-995897048843-----367--56789999---9999988776977999746
No 363
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.29 E-value=0.014 Score=38.36 Aligned_cols=42 Identities=31% Similarity=0.410 Sum_probs=31.4
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 59857870899954987518899999999985039819999864
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
.--+.+|.++-|.|+-|+|||||+--++.-. ...+ -+|+.++
T Consensus 17 sl~v~~Ge~v~iiGpNGaGKSTLlk~i~Gl~-p~~G-~I~i~g~ 58 (245)
T PRK03695 17 SGEVRAGEILHLVGPNGAGKSTLLARMAGLL-SGSG-EIQFAGQ 58 (245)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCC-EEEECCE
T ss_conf 8999599899999789941999999984668-8896-5999999
No 364
>KOG0730 consensus
Probab=97.29 E-value=0.0022 Score=44.27 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=70.4
Q ss_pred CCCCCCHHHHHHHC--CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf 32378124888865--9857870899954987518899999999985039819999864630478888752015775100
Q gi|254780334|r 71 RIQTHIDELDRVTG--GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVY 148 (479)
Q Consensus 71 Ri~TGi~eLDrvLG--GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~ 148 (479)
|.....+.++.-+- .|+.+..-+|+.|+||+|||-++-++|..- +-.+.++.+.|=.... .
T Consensus 197 ~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~---~a~~~~i~~peli~k~------~-------- 259 (693)
T KOG0730 197 RELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY---GAFLFLINGPELISKF------P-------- 259 (693)
T ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---CCEEEECCCHHHHHHC------C--------
T ss_conf 9988743016011443189999874443899998189999999973---7225740628999852------4--------
Q ss_pred EECCCCHHHHHHHHHHCCC-CCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC--CEEEEEEEECCC
Q ss_conf 0034788999999973169-828997216876654204455636799999999999753079--789998630366
Q gi|254780334|r 149 IAIETNVEDIIATLITNEK-PDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG--VAMVLVGHVTKE 221 (479)
Q Consensus 149 ~~~e~~l~~il~~~i~~~~-~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~--i~vilighvTK~ 221 (479)
--.+.++-.+++.. .+.+ |..+.||-|-.+.- +..+...+.++....|..|..-.+ -.++.++-.+..
T Consensus 260 gEte~~LR~~f~~a-~k~~~psii~IdEld~l~p----~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp 330 (693)
T KOG0730 260 GETESNLRKAFAEA-LKFQVPSIIFIDELDALCP----KREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRP 330 (693)
T ss_pred CCHHHHHHHHHHHH-HCCCCCEEEEHHHHHHHCC----CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 63177899999998-6659980775876762377----64333248889999999998527676746999715885
No 365
>PRK10867 signal recognition particle protein; Provisional
Probab=97.28 E-value=0.019 Score=37.33 Aligned_cols=99 Identities=22% Similarity=0.232 Sum_probs=68.9
Q ss_pred CHHHHHHHCCCCC-------CCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCC----CHHHHHHHHHHCCCC
Q ss_conf 1248888659857-------870899954987518899999999985-0398199998646----304788887520157
Q gi|254780334|r 76 IDELDRVTGGGFV-------RGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEE----AIGQIRLRAQRLNTI 143 (479)
Q Consensus 76 i~eLDrvLGGGl~-------~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~ 143 (479)
..||=++||+.-. +-+++++.|--|+||||-+--+|..+. +.+.+|+.+++.- ..+|++.-+++++++
T Consensus 79 ~~eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~ 158 (453)
T PRK10867 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVD 158 (453)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999985888766633789996999974688851858999999999738983798558877058999999999851980
Q ss_pred CCCHHEECCCCHHHHHHHH---HHCCCCCEEEECHH
Q ss_conf 7510000347889999999---73169828997216
Q gi|254780334|r 144 NSSVYIAIETNVEDIIATL---ITNEKPDLVIIDSI 176 (479)
Q Consensus 144 ~~~i~~~~e~~l~~il~~~---i~~~~~~~vVIDSI 176 (479)
.- --..+.+..++.... ....+.|+++||.-
T Consensus 159 ~~--~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTA 192 (453)
T PRK10867 159 FF--PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTA 192 (453)
T ss_pred EE--CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 43--67889988999999999999779999999787
No 366
>PRK11519 tyrosine kinase; Provisional
Probab=97.28 E-value=0.0049 Score=41.67 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=8.4
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99999769989997
Q gi|254780334|r 416 LKEAEKIGFLSGVF 429 (479)
Q Consensus 416 i~eA~~~G~~~~ii 429 (479)
+.+..|.-|..+||
T Consensus 628 ll~~l~~~yD~IIi 641 (720)
T PRK11519 628 LVAWASKNYDLVLI 641 (720)
T ss_pred HHHHHHHHCCEEEE
T ss_conf 99999852999999
No 367
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=97.28 E-value=0.0069 Score=40.62 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=72.4
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHH
Q ss_conf 24888865985787089995498751889999999998503981999986463047888875201577510000347889
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVE 156 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~ 156 (479)
.-|++++.- --+.-.+=|+|+||+|||||.-.+...+..+|++|..+...-|...- .-.-|-
T Consensus 37 ~ll~~l~~~-~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~s-----------------gGaiLG 98 (325)
T PRK09435 37 ELLDALLPH-TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRT-----------------GGSILG 98 (325)
T ss_pred HHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----------------CCCHHH
T ss_conf 999986301-79825997427999868899999999999679858999978999988-----------------861010
Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHE
Q ss_conf 99999973169828997216876654204455636799999999999753079789998630366543311457877530
Q gi|254780334|r 157 DIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDA 236 (479)
Q Consensus 157 ~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~ 236 (479)
|-+.+. +.....-+.|-|+.+ .+..|.++ ..+...+.+++..+.-+++|--|--. ..--.+..|+|+
T Consensus 99 Dr~Rm~-~~~~~~~~fiRs~~s------rg~lgg~~---~~~~~~~~~~~a~g~d~i~iETvGvG---Q~e~~v~~~~d~ 165 (325)
T PRK09435 99 DKTRME-RLSRHPNAFIRPSPS------SGTLGGVA---RKTRETMLLCEAAGFDVILVETVGVG---QSETAVAGMVDF 165 (325)
T ss_pred HHHHHH-HHCCCCCEEEEECCC------CCCCCCCC---HHHHHHHHHHHHCCCCEEEEEECCCC---HHHHHHHHHCCE
T ss_conf 388887-614799848840677------88867733---54999999999779998999706777---148899874266
Q ss_pred EEEEE
Q ss_conf 27851
Q gi|254780334|r 237 VLYFE 241 (479)
Q Consensus 237 vl~~e 241 (479)
++++.
T Consensus 166 ~~~~~ 170 (325)
T PRK09435 166 FLLLQ 170 (325)
T ss_pred EEEEE
T ss_conf 88883
No 368
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.28 E-value=0.0028 Score=43.47 Aligned_cols=137 Identities=19% Similarity=0.309 Sum_probs=75.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHCCCCCCC------------------
Q ss_conf 8578708999549875188999999999850398199998646304-788887520157751------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG-QIRLRAQRLNTINSS------------------ 146 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~-Qi~~Ra~Rl~~~~~~------------------ 146 (479)
-+.+|.++-|-|+-|+|||||+--++.-+.-..+ .+|+.+..-.. .-+.+|.+++.....
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~~G-~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCHHHCCHHHHHHHEEEECCCCCCCCCCEEEEHHHHCCC
T ss_conf 8659979999899888999999998656788887-799999724546988875618993567889999587361742677
Q ss_pred ----HHE-ECCCCHHHH-----------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf ----000-034788999-----------------------------9999731698289972168766542044556367
Q gi|254780334|r 147 ----VYI-AIETNVEDI-----------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 147 ----i~~-~~e~~l~~i-----------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
.+. .++.|.+.+ ++.++. .+++++..|--.+ .+|- -.
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAraLa-Q~~~iLLLDEPTs----~LDi----~~ 173 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA-QETPILLLDEPTS----HLDI----AH 173 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCCC----CCCH----HH
T ss_conf 4655335788768999999999829477766855116866889999999984-5899788279720----0387----77
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 9999999999975307978999863036654331145787753027851
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
|+ ++..-+.+++++++.+++++=| .++.--...|-++.+.
T Consensus 174 Q~-evl~ll~~l~~~~g~tvv~vlH--------Dln~A~ryad~~i~l~ 213 (258)
T COG1120 174 QI-EVLELLRDLNREKGLTVVMVLH--------DLNLAARYADHLILLK 213 (258)
T ss_pred HH-HHHHHHHHHHHHCCCEEEEEEC--------CHHHHHHHCCEEEEEE
T ss_conf 99-9999999999855978999955--------9889997478899997
No 369
>PRK06820 type III secretion system ATPase; Validated
Probab=97.27 E-value=0.0088 Score=39.84 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC---CCCCC
Q ss_conf 663237812488886598578708999549875188999999999850398199998646304788887520---15775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL---NTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl---~~~~~ 145 (479)
.+-+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+.+++.+.. ...++|+.--|.-..+..-.+.+ +....
T Consensus 144 ~~pL~TGIraID~l~--pigrGQR~gIfgg~GvGKT~Ll~~i~~~~~--adv~V~~~IGeRgrEv~efie~~~~~~~~~r 219 (445)
T PRK06820 144 EQMLTTGIRAIDGIL--SCGEGQRIGIFAAAGVGKSTLLSMLCADSA--ADVMVLALIGERGREVREFLEQVLTPEARAR 219 (445)
T ss_pred CCCCCCCCEEEECCC--CCCCCCCCEEECCCCCCCCHHHHHHHHHCC--CCEEEEEEEEEECHHHHHHHHHHHCCCCCCC
T ss_conf 851126854662567--744787421106899981223445653067--8879999874412899999998642376110
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 100003478---89---------99999973169828997216876
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
.+.+.+..+ +. .+-+...++.+--++++||+...
T Consensus 220 tvvV~atsd~p~~~R~~a~~~a~aiAEyfrd~Gk~VLli~DslTr~ 265 (445)
T PRK06820 220 TVVVVATSDRPALERLKGLSTATTVAEYFRERGLKVLLLADSLTRY 265 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 6999416768989999998761148899986798489984465788
No 370
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.0019 Score=44.78 Aligned_cols=136 Identities=15% Similarity=0.264 Sum_probs=69.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH--HHHHHHHHCCCCCCCHHEECC-----------
Q ss_conf 8578708999549875188999999999850398199998646304--788887520157751000034-----------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG--QIRLRAQRLNTINSSVYIAIE----------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~--Qi~~Ra~Rl~~~~~~i~~~~e----------- 152 (479)
=+.+|.++-|.|+.|+|||||+--++.-. +...--+++.+++-.. -...| .+++....+..++..
T Consensus 23 ~i~~Ge~~~ilGpSG~GKSTllr~i~gl~-~p~~G~I~i~g~~i~~~~~~~lr-r~ig~vfQ~~~Lfp~ltV~eNi~~~~ 100 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELR-RKIGYVIQQIGLFPHMTVEENIALVP 100 (242)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHHH-CCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 88699899999999956999999997599-99815999999999999978973-88679917997588882999999999
Q ss_pred ---------------------------------CCHH----H--HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ---------------------------------7889----9--999997316982899721687665420445563679
Q gi|254780334|r 153 ---------------------------------TNVE----D--IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 153 ---------------------------------~~l~----~--il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
..+. + .++..+ ..+|++++.|=-- +.+|. .-
T Consensus 101 ~~~~~~~~~~~~rv~ell~~v~L~~~~~~~~~p~~LSGGqkQRvaiARAl-~~~P~ilLlDEP~----saLD~-----~~ 170 (242)
T cd03295 101 KLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL-AADPPLLLMDEPF----GALDP-----IT 170 (242)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CCCCH-----HH
T ss_conf 97599999999999999987499930110079566899999999999999-6299999981876----54698-----99
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999999975307978999863036654331145787753027851
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-++.-..|.++.|+.++++++|-|- ......+.|.+..+.
T Consensus 171 ~~~i~~~l~~l~~~~~~T~i~vTHd--------~~ea~~~aDri~vm~ 210 (242)
T cd03295 171 RDQLQEEFKRLQQELGKTIVFVTHD--------IDEAFRLADRIAIMK 210 (242)
T ss_pred HHHHHHHHHHHHHHHCCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 9999999999999759999999989--------999999699899998
No 371
>PRK05922 type III secretion system ATPase; Validated
Probab=97.27 E-value=0.0066 Score=40.74 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHHC---CCCC
Q ss_conf 663237812488886598578708999549875188999999999850398199998-646304788887520---1577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVS-GEEAIGQIRLRAQRL---NTIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS-~EEs~~Qi~~Ra~Rl---~~~~ 144 (479)
.+.+.|||.-+|-++ =+.+|+=++|.|.+|+|||||+.+++.+. +.. .++|.- ||-. ..++.-.+.+ +...
T Consensus 138 ~e~L~TGIraID~l~--pigrGQR~gIf~g~GvGKt~Ll~~ia~~~-~~~-v~V~alIGeR~-rEv~efie~~~~~~~~~ 212 (434)
T PRK05922 138 QEIFPTGIKAIDAFL--TLGKGQRIGVFSEPGSGKSSLLSTIAKGS-KST-INVIALIGERG-REVREYIEQHKEGLKAQ 212 (434)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEEECCCCCCCHHHHHHHHHHCC-CCC-EEEEEEEEEEH-HHHHHHHHHHHHCCCCC
T ss_conf 875547855673567--72467677730799997899998676536-787-59998455138-99999999866134521
Q ss_pred CCHHEECCCC---HHH---------HHHHHHHCCCCCEEEECHHHHH
Q ss_conf 5100003478---899---------9999973169828997216876
Q gi|254780334|r 145 SSVYIAIETN---VED---------IIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 145 ~~i~~~~e~~---l~~---------il~~~i~~~~~~~vVIDSIQtl 179 (479)
..+.+.+..+ ... +-+...++.+--++++||+...
T Consensus 213 ~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~ 259 (434)
T PRK05922 213 RTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 03787503778878889999887679999997799679995478899
No 372
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0033 Score=42.99 Aligned_cols=111 Identities=21% Similarity=0.308 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC
Q ss_conf 23781248888659857870899954987518899999999985039819999864630478888752015775100003
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI 151 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~ 151 (479)
+|---+||=+-+ |+-|-.=+|+.|+||+|||-|+-.+|.... -..+-+.|-|=.+.. +| +.-.
T Consensus 169 LPL~~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~---AtFIrvvgSElVqKY------iG---EGaR--- 231 (406)
T COG1222 169 LPLKNPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQTD---ATFIRVVGSELVQKY------IG---EGAR--- 231 (406)
T ss_pred CCCCCHHHHHHC--CCCCCCCEEEECCCCCCHHHHHHHHHHCCC---CEEEEECCHHHHHHH------HC---CCHH---
T ss_conf 336688899974--999997127668999758899999872058---669994219999998------34---1169---
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 478899999997316982899721687665420445563679999999999975
Q gi|254780334|r 152 ETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYA 205 (479)
Q Consensus 152 e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~A 205 (479)
-+-++.+ +.+++.|..++||-|-++-+.-.++..|.- ||+-..|+.+.
T Consensus 232 --lVRelF~-lArekaPsIIFiDEIDAIg~kR~d~~t~gD---rEVQRTmleLL 279 (406)
T COG1222 232 --LVRELFE-LAREKAPSIIFIDEIDAIGAKRFDSGTSGD---REVQRTMLELL 279 (406)
T ss_pred --HHHHHHH-HHHHCCCEEEEEECHHHHHCCCCCCCCCCH---HHHHHHHHHHH
T ss_conf --9999999-874149849998311223111136888850---99999999999
No 373
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.0016 Score=45.26 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=29.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|.++.|.|+.|+|||||+--++.-..-..+. +|+.++
T Consensus 25 ~i~~Ge~~~llGpsG~GKSTllr~i~Gl~~p~~G~-I~i~g~ 65 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD-LFIGEK 65 (369)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEE-EEECCE
T ss_conf 98799899999999736999999997799999549-999999
No 374
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.26 E-value=0.0016 Score=45.29 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=65.9
Q ss_pred CHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC----
Q ss_conf 1248888659857870899954987518899999999985039819999864630478888752015775100003----
Q gi|254780334|r 76 IDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI---- 151 (479)
Q Consensus 76 i~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~---- 151 (479)
..-||.+ .=-+.+|.++-|.|+.|+|||||+--++.-..-..+ -+++.++.-.. +......++....+..++.
T Consensus 30 ~~aL~~v-sl~I~~GE~~~llGpSGsGKSTLlr~iaGl~~p~sG-~I~~~G~~v~~-~~~~~R~ig~VfQ~~aLfp~lTV 106 (378)
T PRK09452 30 KEVISNL-DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG-RIMLDGQDITH-VPAENRYVNTVFQSYALFPHMTV 106 (378)
T ss_pred EEEEECC-EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCE-EEEECCEECCC-CCHHHCCEEEEECCCCCCCCCCH
T ss_conf 9999362-779999989999989997699999999769999846-99999999898-99789885899227643789869
Q ss_pred ---------------------------CCCHHHH-----------------HHHHHHCCCCCEEEECHHHHHHHHHHCCC
Q ss_conf ---------------------------4788999-----------------99997316982899721687665420445
Q gi|254780334|r 152 ---------------------------ETNVEDI-----------------IATLITNEKPDLVIIDSIQTLWSQTAESS 187 (479)
Q Consensus 152 ---------------------------e~~l~~i-----------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~ 187 (479)
..++++. ++..+ -.+|++++.|=--+ .+|.
T Consensus 107 ~eNv~~~l~~~~~~~~e~~~rv~e~L~~v~L~~~~~r~p~~LSGGqqQRVaiARAL-~~~P~vLLLDEPts----~LD~- 180 (378)
T PRK09452 107 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV-VNKPKVLLLDESLS----ALDY- 180 (378)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH-CCCCCEEEECCCCC----CCCH-
T ss_conf 99999899765998799999999998750734354368354998899999999986-23998999578644----4799-
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 563679999999999975307978999863
Q gi|254780334|r 188 PGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 188 ~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
.--++.-..|.++.++.++++++|-|
T Consensus 181 ----~~r~~~~~~l~~l~~~~g~T~i~VTH 206 (378)
T PRK09452 181 ----KLRKQMQNELKALQRKLGITFVFVTH 206 (378)
T ss_pred ----HHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf ----99999999999999984998999988
No 375
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0051 Score=41.55 Aligned_cols=136 Identities=23% Similarity=0.336 Sum_probs=71.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH--HHHHHHHHCCCCCCCHHEECC-CCHHHH----
Q ss_conf 8578708999549875188999999999850398199998646304--788887520157751000034-788999----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG--QIRLRAQRLNTINSSVYIAIE-TNVEDI---- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~--Qi~~Ra~Rl~~~~~~i~~~~e-~~l~~i---- 158 (479)
-+.+|.++.|.|+.|+|||||+--+.. +-.-...-+++.++.... ++..--.+.|....+..+++- |-++++
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH~TvleNv~lap 102 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHH
T ss_conf 673897899989999988899999977-8688786499998722545469999985576624665465532988877753
Q ss_pred --------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf --------------------------------------------999973169828997216876654204455636799
Q gi|254780334|r 159 --------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 159 --------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
++.. -..+|+++..|-......+ .-+
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~dka~~yP~qLSGGQqQRVAIARA-LaM~P~vmLFDEPTSALDP---------Elv 172 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA-LAMDPKVMLFDEPTSALDP---------ELV 172 (240)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHH-HCCCCCEEEECCCCCCCCH---------HHH
T ss_conf 997298999999999999998695566653951048078899999998-7179988863697543798---------899
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99999999975307978999863036654331145787753027851
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
.|+..-+..+|++- .|.+++-| +=.|| ....|.|++++
T Consensus 173 ~EVL~vm~~LA~eG-mTMivVTH---EM~FA-----r~VadrviFmd 210 (240)
T COG1126 173 GEVLDVMKDLAEEG-MTMIIVTH---EMGFA-----REVADRVIFMD 210 (240)
T ss_pred HHHHHHHHHHHHCC-CEEEEEEC---HHHHH-----HHHHHEEEEEE
T ss_conf 99999999999769-86999950---36799-----98622289952
No 376
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.25 E-value=0.00064 Score=48.16 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 999549875188999999999850
Q gi|254780334|r 93 ILVGGDPGIGKSTLLMQTAASLAY 116 (479)
Q Consensus 93 ~Li~G~PGvGKSTL~Lqia~~~a~ 116 (479)
+|+.||||.||||||.=+|..|..
T Consensus 33 ~LL~GPPGLGKTTLA~IiA~Emg~ 56 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 663175687467899999998389
No 377
>PRK13768 GTPase; Provisional
Probab=97.25 E-value=0.0012 Score=46.25 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=54.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH----H--HHHH----------HHHCCCCCCCHHE--ECC
Q ss_conf 08999549875188999999999850398199998646304----7--8888----------7520157751000--034
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG----Q--IRLR----------AQRLNTINSSVYI--AIE 152 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~----Q--i~~R----------a~Rl~~~~~~i~~--~~e 152 (479)
-.+++.|+||+||||++-.+...+...|.++..|-..-..+ + +..| -..||-++.-++. +-.
T Consensus 3 ~~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e~l~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 18999899999889999999999997699759997898665899998863786178999998819896468999999999
Q ss_pred CCHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 788999999973169828997216
Q gi|254780334|r 153 TNVEDIIATLITNEKPDLVIIDSI 176 (479)
Q Consensus 153 ~~l~~il~~~i~~~~~~~vVIDSI 176 (479)
++++.+.+. +++.+.+.+++|--
T Consensus 83 ~~~d~l~~~-i~~~~~dY~i~D~P 105 (253)
T PRK13768 83 TKAEEIKEE-IERLDADYVLVDTP 105 (253)
T ss_pred HHHHHHHHH-HHHCCCCEEEEECC
T ss_conf 989999999-85158875998268
No 378
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.019 Score=37.42 Aligned_cols=195 Identities=19% Similarity=0.230 Sum_probs=92.6
Q ss_pred CCCCCCCCCCCC-------HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCE----------EEEECC
Q ss_conf 455666323781-------248888659857870899954987518899999999985039819----------999864
Q gi|254780334|r 65 SIEEESRIQTHI-------DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRI----------TYVSGE 127 (479)
Q Consensus 65 ~~~~~~Ri~TGi-------~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~v----------lYvS~E 127 (479)
+..+.+|-.+.+ ..|-..+..|-++ ...|+.|++|+||+|++..+|..+....... +.+..+
T Consensus 8 ~~~p~P~~~~~liGqe~~~~~L~~a~~~grl~-HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~ 86 (363)
T PRK07471 8 EADPHPRETTALFGHAAAEAALLDAYRSGRLH-HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPD 86 (363)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 99959998273168199999999999859976-45876799981889999999999857999777776787053125877
Q ss_pred CC-HHHHHHHHHHCCCCCCCHHEE------------CCCCHHHHHHHHHH-------CCCCCEEEECHHHHHHHHHHCCC
Q ss_conf 63-047888875201577510000------------34788999999973-------16982899721687665420445
Q gi|254780334|r 128 EA-IGQIRLRAQRLNTINSSVYIA------------IETNVEDIIATLIT-------NEKPDLVIIDSIQTLWSQTAESS 187 (479)
Q Consensus 128 Es-~~Qi~~Ra~Rl~~~~~~i~~~------------~e~~l~~il~~~i~-------~~~~~~vVIDSIQtl~~~~~~s~ 187 (479)
.. ..++.. + ...+++.+ ....++++.+ +++ ..+.+++|||....|.
T Consensus 87 ~p~~r~i~~-----~-~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~-l~~~~~~~p~~g~~kV~IId~ad~mn------- 152 (363)
T PRK07471 87 HPVARRIAA-----G-AHGGLLTLERSWNEKGKRLRTVITVDEVRE-TIGFFGLTAAEGGWRVVIVDTADEMN------- 152 (363)
T ss_pred CCHHHHHHC-----C-CCCCEEEEECCCCCCCCCCCCCCCHHHHHH-HHHHHCCCCCCCCCEEEEEECHHHHC-------
T ss_conf 728999952-----6-999846676200113332124453999999-99997248524896699986878738-------
Q ss_pred CCCHHHHHHHHHHHHHHHHH--CCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 56367999999999997530--7978999863036654331145787753027851555666544215676320256765
Q gi|254780334|r 188 PGTVIQVRTSVQAMIQYAKK--NGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTD 265 (479)
Q Consensus 188 ~GsvsQvre~~~~L~~~AK~--~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~ 265 (479)
+++++.|.+...+ .++.+|||.|- .+ +.|+.+. -|..+-||.+-.
T Consensus 153 -------~~aaNALLK~LEEPP~~t~fiLit~~--~~-----~llpTI~-------------------SRCq~~~~~~l~ 199 (363)
T PRK07471 153 -------ANAANALLKVLEEPPARSLLLLVSHA--PA-----RLLPTIR-------------------SRCRKLRLRPLA 199 (363)
T ss_pred -------HHHHHHHHHHHCCCCCCEEEEEEECC--HH-----HCHHHHH-------------------HHCCCCCCCCCC
T ss_conf -------89999999972158988389986399--77-----7779999-------------------735242589959
Q ss_pred CEE-EEEECCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCC
Q ss_conf 127-998515663110140455511476676734899730489
Q gi|254780334|r 266 EIG-VFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGT 307 (479)
Q Consensus 266 e~g-vf~m~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~ 307 (479)
+-- .-.+.+.+..++++...-++.......+|-++...-+|.
T Consensus 200 ~~~~~~~L~~~~~~~~~~~~~~~la~~a~Gs~~~Al~l~~~~~ 242 (363)
T PRK07471 200 PEDVIAALAEAGGPALDDAELAALAALAEGSVGRALRLAGGDG 242 (363)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf 9999999998438999989999999975899999998747985
No 379
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.25 E-value=0.0036 Score=42.64 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=41.9
Q ss_pred CCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 56403133345566632378124888865985787089995498751889999999998503981999986
Q gi|254780334|r 56 ISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 56 ~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
-+|..|.|+-.++. +----.-|.+++-.|-++ | .++.|+||+|||||+.-++.... .....+++
T Consensus 7 ~RP~~lde~vGQ~h--llg~~~~L~~~i~~~~~~-s-~Il~GPPG~GKTTlA~iiA~~~~---~~f~~lnA 70 (417)
T PRK13342 7 MRPKTLDEVVGQEH--LLGPGKPLRRMIEAGRLS-S-MILWGPPGTGKTTLARIIAGATD---AEFEALSA 70 (417)
T ss_pred HCCCCHHHHCCCHH--HHCCCHHHHHHHHCCCCC-E-EEEECCCCCCHHHHHHHHHHHHC---CCEEEEEC
T ss_conf 49998888579877--608971999999769997-5-99889699989999999999868---98899614
No 380
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=97.24 E-value=0.0018 Score=44.86 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=35.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 08999549875188999999999850398199998646
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
.+++++|.=|+||||++..+|..+|++|+++|.+|.+-
T Consensus 2 r~i~~~GKGGVGKTT~AaA~A~~~A~~G~rvLlvStDP 39 (304)
T pfam02374 2 RWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDP 39 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 19999579857489999999999995899299994697
No 381
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.24 E-value=0.012 Score=38.92 Aligned_cols=42 Identities=36% Similarity=0.364 Sum_probs=30.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH--------CCCCCEEEEECC
Q ss_conf 857870899954987518899999999985--------039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLA--------YKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a--------~~g~~vlYvS~E 127 (479)
-+.+|..+.|.|+-|+|||||+--++.... ..|.++-|+.-|
T Consensus 29 ~i~~Ge~vgLvG~NGaGKSTLlriLaG~~~~~~G~i~~~~~~~igyl~Q~ 78 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQE 78 (556)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECC
T ss_conf 99689899999999971999999984799878835998799679998156
No 382
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.24 E-value=0.0086 Score=39.92 Aligned_cols=119 Identities=20% Similarity=0.279 Sum_probs=65.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------------------------CCCEEEE-ECC---------
Q ss_conf 85787089995498751889999999998503----------------------------9819999-864---------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------------------------KHRITYV-SGE--------- 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------------------------g~~vlYv-S~E--------- 127 (479)
-+.||+++-|.||-|.||||.+. +..+.=.. .++|||- |.-
T Consensus 555 t~~PG~vvALVGPsGsGKStvaa-LL~n~Y~Pt~G~vLlDg~Pl~~y~H~YLH~~V~~VgQEPvLf~gSvr~NIaYGL~~ 633 (770)
T TIGR00958 555 TLEPGEVVALVGPSGSGKSTVAA-LLQNLYQPTGGQVLLDGVPLSQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTK 633 (770)
T ss_pred EECCCEEEEEECCCCCCHHHHHH-HHHHCCCCCCCEEEECCCCHHHHCCEECCCEEEEEECCCEECCCCHHHHHHHCCCC
T ss_conf 65386259986589983999999-99855789865687768461332650100025433205430246316656516899
Q ss_pred -CCHHHHHHHHHHCCCCCCCHHEEC---CCCHH--------------HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC
Q ss_conf -630478888752015775100003---47889--------------999999731698289972168766542044556
Q gi|254780334|r 128 -EAIGQIRLRAQRLNTINSSVYIAI---ETNVE--------------DIIATLITNEKPDLVIIDSIQTLWSQTAESSPG 189 (479)
Q Consensus 128 -Es~~Qi~~Ra~Rl~~~~~~i~~~~---e~~l~--------------~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~G 189 (479)
++.++|.--|..-+.. +.|.-+. +|++. .|-..+|+ +|.++|.|--. +-+|.
T Consensus 634 ~~T~~~~~aaA~~a~ah-dFI~~~~~gydT~vGE~G~qlSgGQKQRiAiARALvR--~P~vLILDEAT----SALDa--- 703 (770)
T TIGR00958 634 TPTDEEVTAAAKAANAH-DFISELPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEAT----SALDA--- 703 (770)
T ss_pred CCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCEEEEECCHH----HHHCC---
T ss_conf 98278999999861376-4435788986754089787523038999999988751--89057400011----02136---
Q ss_pred CHHHHHHHHHHHHH--HHHHCCCEEEEEEE
Q ss_conf 36799999999999--75307978999863
Q gi|254780334|r 190 TVIQVRTSVQAMIQ--YAKKNGVAMVLVGH 217 (479)
Q Consensus 190 svsQvre~~~~L~~--~AK~~~i~viligh 217 (479)
-+|. +|-+.|.+ +-+..+-|+++|.|
T Consensus 704 -~~~~-~~e~~lq~A~~~~~~~rTv~~Iah 731 (770)
T TIGR00958 704 -ESQL-EVEQLLQEALSRSRKSRTVLLIAH 731 (770)
T ss_pred -CCHH-HHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf -6547-899999998635306980899826
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.23 E-value=0.0055 Score=41.35 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=67.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH----HHHH
Q ss_conf 857870899954987518899999999985039819999864630478888752015775100003478899----9999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED----IIAT 161 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~----il~~ 161 (479)
-+.+|..+.+.|+-|+|||||+--++..+....+.+ ++..... +..+...+--+ .++.
T Consensus 22 ~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i-~~~~~~~-----------------i~y~~QLSgGqkqr~~la~ 83 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGSTVK-----------------IGYFEQLSGGEKMRLALAK 83 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEE-EECCCCE-----------------EEEEHHCCHHHHHHHHHHH
T ss_conf 987999999998999849999999848988985099-9999608-----------------9987007999999999999
Q ss_pred HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 97316982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 162 LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 162 ~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
. --.+|++++.|=.. ..+|. +....+.++.++.+.+++++-|- ...++++.|-++.++
T Consensus 84 a-l~~~p~iliLDEPt----~~LD~---------~~~~~i~~~l~~~~~tii~vsHd--------~~~~~~~~drii~l~ 141 (144)
T cd03221 84 L-LLENPNLLLLDEPT----NHLDL---------ESIEALEEALKEYPGTVILVSHD--------RYFLDQVATKIIELE 141 (144)
T ss_pred H-HCCCCCEEEEECCC----CCCCH---------HHHHHHHHHHHHCCCEEEEEECC--------HHHHHHHCCEEEEEE
T ss_conf 9-72599899995775----55899---------99999999999709999999679--------899998799999992
No 384
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.0024 Score=43.92 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=30.4
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 316982899721687665420445563679999999999975307978999863
Q gi|254780334|r 164 TNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 164 ~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
-..+|+++|.|=-.+... +....++...|..+.++.++++++|-|
T Consensus 183 La~~P~lLIlDEPTs~LD---------~~~~~~il~ll~~L~~e~g~tvl~ItH 227 (623)
T PRK10261 183 LSCRPAVLIADEPTTALD---------VTIQAQILQLIKVLQKEMSMGVIFITH 227 (623)
T ss_pred HHCCCCEEEECCCCCCCC---------HHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 741886588557743436---------899999999999998875235205537
No 385
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.23 E-value=0.0072 Score=40.49 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=32.9
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
-.+|++++.|=-. ..+|. +...+|.++.++...++++|-|- ...|.+.+|.++.++
T Consensus 179 ~~~PdlLlLDEPT----n~LD~---------~~i~~L~~~L~~~~gtvivVSHD--------r~fLd~v~~~Il~l~ 234 (556)
T PRK11819 179 LSKPDMLLLDEPT----NHLDA---------ESVAWLEQFLHDYPGTVVAVTHD--------RYFLDNVAGWILELD 234 (556)
T ss_pred HCCCCEEEECCCC----CCCCH---------HHHHHHHHHHHHCCCCEEEEEEC--------HHHHHHHHHEEEECC
T ss_conf 4699989984887----77897---------78999999976337877999915--------799985523353014
No 386
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.23 E-value=0.011 Score=39.23 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=68.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCEEEEECCC----CHHHH-HHHHHHC---------------
Q ss_conf 857870899954987518899999999985039-----8199998646----30478-8887520---------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK-----HRITYVSGEE----AIGQI-RLRAQRL--------------- 140 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g-----~~vlYvS~EE----s~~Qi-~~Ra~Rl--------------- 140 (479)
-+.+|..+-+.|+.|+|||.-++.+..-+..++ .++.| .|++ |..|. +.|..++
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f-~G~dlL~~se~~lr~iRG~~I~MIFQEPMtSLNPl~ 110 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILF-DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLH 110 (534)
T ss_pred EECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEE-CCHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCHH
T ss_conf 6438977999834889822899999974689854576632678-670132189889852126606889526623367176
Q ss_pred --------------------------------CCCCCCHHE------ECCCCHH-HHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf --------------------------------157751000------0347889-9999997316982899721687665
Q gi|254780334|r 141 --------------------------------NTINSSVYI------AIETNVE-DIIATLITNEKPDLVIIDSIQTLWS 181 (479)
Q Consensus 141 --------------------------------~~~~~~i~~------~~e~~l~-~il~~~i~~~~~~~vVIDSIQtl~~ 181 (479)
|+....-.+ ++--.-. -+++.. -...|+++|-|--.|...
T Consensus 111 tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMA-Lan~P~lLIADEPTTALD 189 (534)
T COG4172 111 TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMA-LANEPDLLIADEPTTALD 189 (534)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH-HCCCCCEEEECCCCCHHH
T ss_conf 7999999999997255477899999999997199862345543872348523658999999-738998686169852200
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 420445563679999999999975307978999863
Q gi|254780334|r 182 QTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 182 ~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
-.+ |. ++..-|..+-++.+.++++|-|
T Consensus 190 Vtv--------Qa-QIL~Ll~~Lq~~~gMa~lfITH 216 (534)
T COG4172 190 VTV--------QA-QILDLLKELQAELGMAILFITH 216 (534)
T ss_pred HHH--------HH-HHHHHHHHHHHHHCCEEEEEEC
T ss_conf 305--------99-9999999999974957999944
No 387
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0063 Score=40.91 Aligned_cols=100 Identities=27% Similarity=0.324 Sum_probs=72.5
Q ss_pred CCHHHHHHHCCC-------CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCC
Q ss_conf 812488886598-------578708999549875188999999999850398199998646----304788887520157
Q gi|254780334|r 75 HIDELDRVTGGG-------FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTI 143 (479)
Q Consensus 75 Gi~eLDrvLGGG-------l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~ 143 (479)
=..||=.+||++ --+-+++++.|=-|.||||-+-.+|..+.++|++++.++..- ..+|++.-+++.+++
T Consensus 78 V~eELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999998488876650378998589998156797486899999999974994589850567868999999999860985
Q ss_pred CCCHHEECCCCHHHHHHHHH---HCCCCCEEEECHH
Q ss_conf 75100003478899999997---3169828997216
Q gi|254780334|r 144 NSSVYIAIETNVEDIIATLI---TNEKPDLVIIDSI 176 (479)
Q Consensus 144 ~~~i~~~~e~~l~~il~~~i---~~~~~~~vVIDSI 176 (479)
.-.. ..+.+--+|....+ .+...|++|||.-
T Consensus 158 ~f~~--~~~~~Pv~Iak~al~~ak~~~~DvvIvDTA 191 (451)
T COG0541 158 FFGS--GTEKDPVEIAKAALEKAKEEGYDVVIVDTA 191 (451)
T ss_pred EECC--CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 3167--788997999999999999749988999688
No 388
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.22 E-value=0.0081 Score=40.10 Aligned_cols=151 Identities=20% Similarity=0.243 Sum_probs=71.8
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEECC--CCHHHHHHH-HHHCCCCC-CCHHEECC
Q ss_conf 888865985787089995498751889999999998503--9819999864--630478888-75201577-51000034
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK--KHRITYVSGE--EAIGQIRLR-AQRLNTIN-SSVYIAIE 152 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~--g~~vlYvS~E--Es~~Qi~~R-a~Rl~~~~-~~i~~~~e 152 (479)
|..++.| -.|++ ++|.|+||+|||+....++..+... .-.++||-+. -++.++..+ ++.|.... ..--+...
T Consensus 46 l~~~l~g-~~~~n-~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L~~~~~p~~G~s~~ 123 (394)
T PRK00411 46 LRPALRG-SRPSN-VLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSLFGHPPPSSGLSFD 123 (394)
T ss_pred HHHHHCC-CCCCC-EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 9999759-99984-799889999899999999999997468965999969668989999999999956998987787899
Q ss_pred CCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCC--CCCHHH
Q ss_conf 7889999999731698289972168766542044556367999999999997530-7978999863036654--331145
Q gi|254780334|r 153 TNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKK-NGVAMVLVGHVTKEGQ--IAGPRV 229 (479)
Q Consensus 153 ~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~-~~i~vilighvTK~G~--iAGp~~ 229 (479)
.-++.+...+.+..++-+||+|=+..+.... + . +..-.|.++-.. .+.-+.+||=.|+-.- .-.|++
T Consensus 124 ~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~-----~--~---~vLY~L~r~~~~~~~~~~~vI~IsN~~~~~~~Ldprv 193 (394)
T PRK00411 124 ELFDKIAEYLDERDRVLIVALDDINYLVEKE-----G--N---DVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRV 193 (394)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-----C--C---HHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9999999986166975899996554020366-----5--0---8999998540226887389999976871776640777
Q ss_pred HHHHHHEEEEEE
Q ss_conf 787753027851
Q gi|254780334|r 230 IEHMVDAVLYFE 241 (479)
Q Consensus 230 LeH~VD~vl~~e 241 (479)
--++-...++|.
T Consensus 194 ~S~l~~~~i~F~ 205 (394)
T PRK00411 194 KSVFGPEEIVFP 205 (394)
T ss_pred HCCCCCEEEEEC
T ss_conf 502786289858
No 389
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.21 E-value=0.023 Score=36.83 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=81.8
Q ss_pred CCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC--CEEEE-ECCCCHHHHHHHHHHCCCCCCCHHEEC
Q ss_conf 812488886598578708999549875188999999999850398--19999-864630478888752015775100003
Q gi|254780334|r 75 HIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKH--RITYV-SGEEAIGQIRLRAQRLNTINSSVYIAI 151 (479)
Q Consensus 75 Gi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~--~vlYv-S~EEs~~Qi~~Ra~Rl~~~~~~i~~~~ 151 (479)
|+.-+|-++ =+-+|+=.+|.|++|+|||+|+..++.++.++.. .++|+ -+|- .+.+..-.+.+. . ..+.+
T Consensus 3 ~~r~ID~l~--pigkGQR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER-~rEv~e~~~~~~--~--~vv~s 75 (249)
T cd01128 3 STRVVDLFA--PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER-PEEVTDMQRSVK--G--EVIAS 75 (249)
T ss_pred CCEEEEEEC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECC-HHHHHHHHHHHC--E--EEEEE
T ss_conf 410154324--6167867788789998899999999999998589849999997165-799999999716--1--69995
Q ss_pred CCC---H---------HHHHHHHHHCCCCCEEEECHHHHHHHH--HHCC-----CCCC-HHHHHHHHHHHHHHHHH----
Q ss_conf 478---8---------999999973169828997216876654--2044-----5563-67999999999997530----
Q gi|254780334|r 152 ETN---V---------EDIIATLITNEKPDLVIIDSIQTLWSQ--TAES-----SPGT-VIQVRTSVQAMIQYAKK---- 207 (479)
Q Consensus 152 e~~---l---------~~il~~~i~~~~~~~vVIDSIQtl~~~--~~~s-----~~Gs-vsQvre~~~~L~~~AK~---- 207 (479)
..+ . -.+-+...++.+--++++||+.-.... ++.. .++. ..-+.+....+...+..
T Consensus 76 t~d~~p~~r~~~a~~a~~iAEyfr~~G~dVLl~~DslTR~A~A~rEis~~~ge~~~~g~~~~~~~~~~~~~~~a~~~e~~ 155 (249)
T cd01128 76 TFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEG 155 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 69999899999999999999999987997799951488999998663024698788997913545548999852678899
Q ss_pred CCCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEEC
Q ss_conf 79789998630366543311--457877530278515
Q gi|254780334|r 208 NGVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFEG 242 (479)
Q Consensus 208 ~~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~eg 242 (479)
-.+|.+.+-.+-.+..+..| ..+-|+.|.-+++.-
T Consensus 156 GSiT~~~tvlve~~d~~d~~I~~~~~~i~Dg~IvLsr 192 (249)
T cd01128 156 GSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDR 192 (249)
T ss_pred CEEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEECH
T ss_conf 5379988887637766672689998651774999639
No 390
>KOG0735 consensus
Probab=97.21 E-value=0.0068 Score=40.66 Aligned_cols=138 Identities=19% Similarity=0.254 Sum_probs=77.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 578708999549875188999999999850398-1999986463047888875201577510000347889999999731
Q gi|254780334|r 87 FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKH-RITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 87 l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~-~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
+.+-..+|+.|++|+|||+|+-.++....+.-. -+-|+++++... .++. .+. ..+.+++... ..
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~------~~~e----~iQ----k~l~~vfse~-~~ 492 (952)
T KOG0735 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG------SSLE----KIQ----KFLNNVFSEA-LW 492 (952)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCC------HHHH----HHH----HHHHHHHHHH-HH
T ss_conf 3346618986799877769999999875156506999975221042------0489----999----9999999998-86
Q ss_pred CCCCEEEECHHHHHHH-HHHCCCCCCHHHHHHHHHHHHH----HHHHCCC-EEEEEEEECCCCCCCCHHHHHHHHHEEEE
Q ss_conf 6982899721687665-4204455636799999999999----7530797-89998630366543311457877530278
Q gi|254780334|r 166 EKPDLVIIDSIQTLWS-QTAESSPGTVIQVRTSVQAMIQ----YAKKNGV-AMVLVGHVTKEGQIAGPRVIEHMVDAVLY 239 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~-~~~~s~~GsvsQvre~~~~L~~----~AK~~~i-~vilighvTK~G~iAGp~~LeH~VD~vl~ 239 (479)
..|.++|.|-+-.+.+ +.-++.+-++ +....+..|.+ +-|.+.. +++..|+ .-.++--.-...|.++++.+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~-~~~rla~flnqvi~~y~~~~~~ia~Iat~q--e~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735 493 YAPSIIVLDDLDCLASASSNENGQDGV-VSERLAAFLNQVIKIYLKRNRKIAVIATGQ--ELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HCCCEEEECCHHHHHCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCEEEEEEECH--HHHHCCHHHCCCCCEEEEEE
T ss_conf 378089970503540568444773028-999999999999999870685799998514--34203853347631478881
Q ss_pred EEC
Q ss_conf 515
Q gi|254780334|r 240 FEG 242 (479)
Q Consensus 240 ~eg 242 (479)
+..
T Consensus 570 L~a 572 (952)
T KOG0735 570 LPA 572 (952)
T ss_pred CCC
T ss_conf 589
No 391
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.21 E-value=0.018 Score=37.66 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 857870899954987518899999999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAA 112 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~ 112 (479)
=+.+|.++.|.|+.|+|||||+.-++.
T Consensus 22 ~i~~Gei~~LvG~sGsGKSTL~~~l~G 48 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRG 48 (520)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999998999999999699999999965
No 392
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.21 E-value=0.0041 Score=42.26 Aligned_cols=147 Identities=23% Similarity=0.389 Sum_probs=82.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH--HHCCCC-----------CCCHHEECC
Q ss_conf 8578708999549875188999999999850398199998646304788887--520157-----------751000034
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRA--QRLNTI-----------NSSVYIAIE 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra--~Rl~~~-----------~~~i~~~~e 152 (479)
=+.+|...-|-||.|+|||||+--+.......-++|=.=+.| ..|...+. ++.|-. .+||--+.|
T Consensus 352 ~~~aGe~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGad--l~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~e 429 (556)
T TIGR01842 352 AIQAGEALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGAD--LKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGE 429 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHH--HHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 563774588874786525889878872101356533640334--402375365880154798505076767640244688
Q ss_pred -CCHHHHHHH-------------------------------------H--HHCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf -788999999-------------------------------------9--731698289972168766542044556367
Q gi|254780334|r 153 -TNVEDIIAT-------------------------------------L--ITNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 153 -~~l~~il~~-------------------------------------~--i~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
.+-+.|++. + .--.+|.+||.|=- ++.+|+. |-.
T Consensus 430 n~d~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEP----NsNLD~~-GE~- 503 (556)
T TIGR01842 430 NADPEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALYGDPKLVVLDEP----NSNLDEE-GEQ- 503 (556)
T ss_pred CCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC----CCCCCHH-HHH-
T ss_conf 7887899999976030357516968854431377777861468999999987179837873288----9876617-899-
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE-CCCCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 9999999999975307978999863036654331145787753027851-55566654421567632025676512
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE-GGTRNTQYDYRILRSVKNRFGPTDEI 267 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e-ge~~~~~~~~R~Lr~~KNRfG~t~e~ 267 (479)
...++| .-+|++++++++|-| =|. +-..||-++-++ | ++ .+||.-+|+
T Consensus 504 ---AL~~Ai-~~lK~rg~tvv~itH--------Rp~-lL~~vDkIl~l~dG---------~~-----~~fG~r~~v 552 (556)
T TIGR01842 504 ---ALANAI-KALKARGITVVVITH--------RPS-LLGLVDKILVLQDG---------RL-----KAFGERDEV 552 (556)
T ss_pred ---HHHHHH-HHHHHCCCEEEEEEC--------HHH-HHHHHHHHHHHHCC---------HH-----HHCCCHHHH
T ss_conf ---999999-999867972899841--------068-99999999998407---------16-----303881279
No 393
>PRK04296 thymidine kinase; Provisional
Probab=97.20 E-value=0.0056 Score=41.28 Aligned_cols=136 Identities=21% Similarity=0.275 Sum_probs=84.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 708999549875188999999999850398199998646----3047888875201577510000347889999999731
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
|.+.++.|+=-+||||-+++.+......|.+++++.-.. +...|.. |.+...+-+.+....++-..+......
T Consensus 2 g~L~~i~GpMfSGKTteLi~~~~~~~~~gkkvl~~kp~~D~Ry~~~~I~S---h~g~~~~~~~v~~~~~i~~~~~~~~~~ 78 (197)
T PRK04296 2 AKLYFIYGAMNSGKSTELLQRAYNYEERGMKVLVFTPAIDDRYGEGKVVS---RIGLSREAILISSDTDIFELIEEEHEG 78 (197)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEC---CCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 55999993427888999999999999879959999853446577785786---789834689948789999999876304
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECC--CCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 6982899721687665420445563679999999999975307978999863036--6543311457877530278515
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTK--EGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK--~G~iAGp~~LeH~VD~vl~~eg 242 (479)
.+++++.||=.|-+ .. .|+ ..+.+.+.+.++.|++-|--+- .-.+-+-..|--+.|.|..+.+
T Consensus 79 ~~~dvI~IDEaQFf-~~---------~~i----~~~~~~~~~~~~~Viv~GLd~Df~~~~F~~~~~Li~~Ad~V~kl~a 143 (197)
T PRK04296 79 GKIDCVLIDEAQFL-DK---------EQV----VQLAEVVDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 143 (197)
T ss_pred CCCCEEEECCHHCC-CH---------HHH----HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEE
T ss_conf 78568997202127-98---------999----9999999831858999765033024865439999972680999743
No 394
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0028 Score=43.45 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=31.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 98578708999549875188999999999850398199998646
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
=-+.+|.++.|-|+.|+|||||+--++. +-+...--+|+.+++
T Consensus 27 l~i~~Ge~~~llGpSG~GKTTlLr~iaG-l~~p~~G~I~~~g~~ 69 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTSGQIFIDGED 69 (351)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEECCEE
T ss_conf 4988998999999996499999999976-999883699999999
No 395
>KOG0744 consensus
Probab=97.19 E-value=0.0025 Score=43.83 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=58.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCC
Q ss_conf 8708999549875188999999999850398199998--64630478888752015775100003478899999997316
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVS--GEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNE 166 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS--~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~ 166 (479)
-..++|+.||||+|||+||-.+|..++-+-..--|-+ -|=+...+-..+ +.-.+..+. .+-+-+++++++.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKW--FsESgKlV~-----kmF~kI~ELv~d~ 248 (423)
T KOG0744 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKW--FSESGKLVA-----KMFQKIQELVEDR 248 (423)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHH--HHHHHHHHH-----HHHHHHHHHHHCC
T ss_conf 414899857999882279999987514652376444069997046788988--712113899-----9999999997178
Q ss_pred -CCCEEEECHHHHHHHHHHCCCCCCH--HHHHH---HHHHHHHHHHHCCCEEEEEEEE
Q ss_conf -9828997216876654204455636--79999---9999999753079789998630
Q gi|254780334|r 167 -KPDLVIIDSIQTLWSQTAESSPGTV--IQVRT---SVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 167 -~~~~vVIDSIQtl~~~~~~s~~Gsv--sQvre---~~~~L~~~AK~~~i~vilighv 218 (479)
..-+|.||-+..+.........++- -.+|- ....|.++-+..|+.++.+-.+
T Consensus 249 ~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl 306 (423)
T KOG0744 249 GNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNL 306 (423)
T ss_pred CCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf 9689998078788899987541379982189999999998998604797799962626
No 396
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.19 E-value=0.007 Score=40.54 Aligned_cols=145 Identities=12% Similarity=0.230 Sum_probs=82.8
Q ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCC-CCCCHHEECCCCHHHHHHH
Q ss_conf 659857870899954987518899999999985039819999864630478888752015-7751000034788999999
Q gi|254780334|r 83 TGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNT-INSSVYIAIETNVEDIIAT 161 (479)
Q Consensus 83 LGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~-~~~~i~~~~e~~l~~il~~ 161 (479)
|..=+..+..++|+|..|+|||||+-.++..+.. .+++ ++-|++.+-.-..-....+ ...+-.-..+..+.++++.
T Consensus 155 L~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~-~eRI--vtIEDt~EL~l~~~n~V~l~~~~~~~g~~~vt~~~Ll~~ 231 (343)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP-QERL--ITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQA 231 (343)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCC-CCCE--EEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 9999976988999888986199999999962896-5527--996115002589999689996589888583979999999
Q ss_pred HHHCCCCCEEEE---------CHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH
Q ss_conf 973169828997---------21687665420445563679-----9999999999753079789998630366543311
Q gi|254780334|r 162 LITNEKPDLVII---------DSIQTLWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGP 227 (479)
Q Consensus 162 ~i~~~~~~~vVI---------DSIQtl~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp 227 (479)
.. ..+||.+|+ |.+|++. .+.+||++- .++...+|..++|+.....=+ ..+ +--
T Consensus 232 aL-RmrPDRIivGEvRG~EA~d~L~A~n----TGH~GsitTiHAnSa~~a~~RL~~l~~~s~~g~~l----~~~---~i~ 299 (343)
T PRK13851 232 SL-RMRPDRILLGEMRDDAAWAYLSEVV----SGHPGSISTIHGANPVQGFKKLFSLVKSSPQGASL----EDR---TLI 299 (343)
T ss_pred HH-CCCCCEEEEEEECCHHHHHHHHHHH----CCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCC----CHH---HHH
T ss_conf 86-0799828998526699999999984----69998303356799999999999998735247999----999---999
Q ss_pred HHHHHHHHEEEEEEC
Q ss_conf 457877530278515
Q gi|254780334|r 228 RVIEHMVDAVLYFEG 242 (479)
Q Consensus 228 ~~LeH~VD~vl~~eg 242 (479)
+.+-..+|.|+|++.
T Consensus 300 ~~i~~~IDvVV~~~r 314 (343)
T PRK13851 300 DMLATAIDVIIPFRA 314 (343)
T ss_pred HHHHHHCCEEEEEEE
T ss_conf 999985999999997
No 397
>PRK06696 uridine kinase; Validated
Probab=97.19 E-value=0.0042 Score=42.16 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=82.2
Q ss_pred HHHHCCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH
Q ss_conf 888659857870--899954987518899999999985039819999864630478888752015775100003478899
Q gi|254780334|r 80 DRVTGGGFVRGS--VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED 157 (479)
Q Consensus 80 DrvLGGGl~~Gs--~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~ 157 (479)
|+++ .+-||. ++-|.|.||+|||||+-+++..+.++|..|+.++...-..--..|.++ +....+-+.....+.+.
T Consensus 16 ~~i~--~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf~~~~~~r~~~-g~~~~~~~~~d~~D~~~ 92 (227)
T PRK06696 16 NHIL--TLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDFHNPKVIRYRR-GRESARGYYEDAYDYTA 92 (227)
T ss_pred HHHH--HCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH-CCCCCCCCCCCCCCHHH
T ss_conf 9998--35999868999778998787999999999997469948997154434737777651-66774434754105899
Q ss_pred HHHHHHHCCC---CCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 9999973169---8289972168766542044556367999999999997530797899986303665433114578775
Q gi|254780334|r 158 IIATLITNEK---PDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMV 234 (479)
Q Consensus 158 il~~~i~~~~---~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~V 234 (479)
+..+++.... ...+...+ |....+....+ ... ......++++ +|.+..-..+..+.
T Consensus 93 l~~~ll~pL~~~~~~~~~~~~----~D~~td~~~~~---------~~~---~~p~~~VlIv-----eG~~ll~~elr~~~ 151 (227)
T PRK06696 93 FRELLLKPLGPNGDRQYRTAS----HDLKTDIPVHN---------EPL---MAAPNAVLIV-----DGTFLLRKELRDLW 151 (227)
T ss_pred HHHHHHHHHCCCCCCEEEECC----CCCCCCCCCCC---------CCE---ECCCCCEEEE-----ECHHHCCHHHHHCC
T ss_conf 999998663158980584112----46335754568---------716---4699808999-----25564665577307
Q ss_pred HEEEEEECCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 30278515556665442156763202567651
Q gi|254780334|r 235 DAVLYFEGGTRNTQYDYRILRSVKNRFGPTDE 266 (479)
Q Consensus 235 D~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e 266 (479)
|..++++.... ....|.+..--..+|...|
T Consensus 152 D~~v~ld~~~~--~~~~R~~~Rd~~~~g~~~~ 181 (227)
T PRK06696 152 DYKIFLDTDFE--ESRRRGAKRDTEAFGSYEE 181 (227)
T ss_pred CEEEEEECCHH--HHHHHHHHHHHHHHCCCHH
T ss_conf 48999979999--9988766532544168378
No 398
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.18 E-value=0.012 Score=38.90 Aligned_cols=136 Identities=24% Similarity=0.296 Sum_probs=69.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--------------CHHH-HHHHHHHCCCCCCCH---
Q ss_conf 8578708999549875188999999999850398199998646--------------3047-888875201577510---
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE--------------AIGQ-IRLRAQRLNTINSSV--- 147 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE--------------s~~Q-i~~Ra~Rl~~~~~~i--- 147 (479)
-+.+|.++-|.|+-|+|||||+--++.-+.-..+.+ ++.+.. +..+ +...+.-.+...+..
T Consensus 44 ~i~~GeivgilG~NGaGKSTLl~~i~Gl~~p~~G~I-~i~G~~~~~~~~~~~~~p~ltv~enl~~~~~~~g~~~~~~~~~ 122 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV-TVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK 122 (224)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 983898999997999819999999975877787769-9998984301574203998829999999999829658999999
Q ss_pred --------------H-EECCCCHHH----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf --------------0-003478899----999997316982899721687665420445563679999999999975307
Q gi|254780334|r 148 --------------Y-IAIETNVED----IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKN 208 (479)
Q Consensus 148 --------------~-~~~e~~l~~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~ 208 (479)
. -....+--+ .+.. .--.+|++++.|=.- ..+| |.+ .++....+..+. +.
T Consensus 123 ~~~~l~~~~L~~~~~~~~~~LSgG~kqRl~iA~-al~~~P~illLDEPt----~gLD--~~~---~~~i~~~i~~l~-~~ 191 (224)
T cd03220 123 IDEIIEFSELGDFIDLPVKTYSSGMKARLAFAI-ATALEPDILLIDEVL----AVGD--AAF---QEKCQRRLRELL-KQ 191 (224)
T ss_pred HHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEECCC----CCCC--HHH---HHHHHHHHHHHH-HC
T ss_conf 999998636755653866546999999999999-996699999991886----6569--999---999999999998-58
Q ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 978999863036654331145787753027851
Q gi|254780334|r 209 GVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 209 ~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+.+++++-|- ...++.+.|-++.++
T Consensus 192 g~tiii~sH~--------l~~v~~lcdriivl~ 216 (224)
T cd03220 192 GKTVILVSHD--------PSSIKRLCDRALVLE 216 (224)
T ss_pred CCEEEEECCC--------HHHHHHHCCEEEEEE
T ss_conf 9999998898--------899999699999998
No 399
>PRK10744 phosphate transporter subunit; Provisional
Probab=97.18 E-value=0.028 Score=36.21 Aligned_cols=28 Identities=32% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8578708999549875188999999999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAAS 113 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~ 113 (479)
-+.+|.++-|.|+-|+|||||+--++.-
T Consensus 32 ~i~~Ge~~~liG~nGaGKSTLlk~i~gl 59 (257)
T PRK10744 32 DIAKNQVTAFIGPSGCGKSTLLRTFNKM 59 (257)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9889989999999998199999999876
No 400
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.01 Score=39.37 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=35.7
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 316982899721687665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 164 TNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 164 ~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
--.+|++++.|=-. ..+| .+...+|.++.|+.+.++++|-|- ...|.+++|.+++++
T Consensus 164 L~~~PdlLLLDEPT----nhLD---------~~~i~~L~~~L~~~~gtvilVSHD--------r~fL~~v~dri~~l~ 220 (638)
T PRK10636 164 LICRSDLLLLDEPT----NHLD---------LDAVIWLEKWLKSYQGTLILISHD--------RDFLDPIVDKIIHIE 220 (638)
T ss_pred HCCCCCEEEECCCC----CCCC---------HHHHHHHHHHHHHCCCEEEEEECC--------HHHHHHCCCCEEEEC
T ss_conf 55899989970888----8899---------899999999999769819999666--------898871477169982
No 401
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=97.16 E-value=0.0019 Score=44.73 Aligned_cols=212 Identities=17% Similarity=0.229 Sum_probs=113.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH------H------------H---HHC--CCCCCCHH
Q ss_conf 89995498751889999999998503981999986463047888------8------------7---520--15775100
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL------R------------A---QRL--NTINSSVY 148 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~------R------------a---~Rl--~~~~~~i~ 148 (479)
++.=+|-=|+||||-.-.+..++|+.|+||+.|.+.=...=+-+ | | +.| ....+|++
T Consensus 4 iViTSGKGGVGKTTtTANlG~aLA~lG~kVvliD~DiGLRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~~NL~ 83 (272)
T TIGR01968 4 IVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLENLY 83 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 99981788977358989999999961982899954757034577742310354535543248421100100126752356
Q ss_pred EECCC-----------CHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 00347-----------8899999997316982899721687665420445563679999999999975307978999863
Q gi|254780334|r 149 IAIET-----------NVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 149 ~~~e~-----------~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
+++.. ++..++..+.++...|.|+|||-.=+-... | .--. .-.-+++.
T Consensus 84 LLpAsQ~rdK~~~~~E~~~~lv~~Lk~~~~FDYviIDcPAGIE~GF-----------~-----nAv~--~Ad~AiVV--- 142 (272)
T TIGR01968 84 LLPASQTRDKDAVTPEQMKKLVNELKEEEHFDYVIIDCPAGIESGF-----------R-----NAVA--PADEAIVV--- 142 (272)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH-----------H-----HHHH--HCCEEEEE---
T ss_conf 6365302361346977899999998543793079973787743568-----------9-----9875--26835898---
Q ss_pred ECCCCCCCCHHHHHHHHHEEE-EEECCCCCCCC-CCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCC--CC
Q ss_conf 036654331145787753027-85155566654-421567632025676512799851566311014045551147--66
Q gi|254780334|r 218 VTKEGQIAGPRVIEHMVDAVL-YFEGGTRNTQY-DYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDR--DS 293 (479)
Q Consensus 218 vTK~G~iAGp~~LeH~VD~vl-~~ege~~~~~~-~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~--~~ 293 (479)
|-+- ++- -...|-|+ -+|.+.+.... ..=..+.+=||+-|- -+...-+.+|.|-.++.=-.- --
T Consensus 143 -ttPE-vsa----vRDADRvIGlLea~~~i~~~GEE~~~~LivNR~rP~------mV~~G~Mlsi~Dv~~~L~i~LiGvi 210 (272)
T TIGR01968 143 -TTPE-VSA----VRDADRVIGLLEAKGNIEEKGEEVKIKLIVNRLRPE------MVKKGDMLSIDDVLEILSIPLIGVI 210 (272)
T ss_pred -ECCC-CCC----HHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHH------HHHCCCCCCHHHHHHHCCCCCEEEE
T ss_conf -7787-451----002556752421245544577646434778515647------7416898278999986088616863
Q ss_pred CCCCEEEEEEECCCCCCEEEEE-EEECCCCCCCCEEE-EECCCHHH
Q ss_conf 7673489973048974115533-10115778772477-60468666
Q gi|254780334|r 294 TSPGTAVFAGIEGTRALLVEIQ-SLVVPTSLGMPRRT-VVGWDSSR 337 (479)
Q Consensus 294 ~~~Gs~v~~~~eG~r~~lvEvQ-ALv~~~~~~~p~R~-~~G~d~~r 337 (479)
+-.-.++..+-.|- |+.++=+ +..+..+....||. -..+++..
T Consensus 211 PeD~~iI~stN~GE-P~vl~~~L~~~g~Af~~~ArRi~G~~vpf~~ 255 (272)
T TIGR01968 211 PEDEEIIVSTNKGE-PVVLNKKLSRAGKAFENIARRILGEEVPFED 255 (272)
T ss_pred CCCCCEEEEECCCE-EEEECCCCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 29986576645614-3544600261678899998753488643033
No 402
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.15 E-value=0.015 Score=38.19 Aligned_cols=43 Identities=14% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
..+|++++.|=..+ .++ ....++....|.++ ++.++++++|-|
T Consensus 157 ~~~p~lliLDEPt~----~Ld-----~~~~~~l~~~l~~l-~~~g~til~isH 199 (501)
T PRK10762 157 SFESKVIIMDEPTD----ALT-----DTETESLFRVIREL-KSQGRGIVYISH 199 (501)
T ss_pred HCCCCEEEECCCCC----CCC-----HHHHHHHHHHHHHH-HHCCCCEEEECC
T ss_conf 45998775358755----788-----78889999988787-744841477514
No 403
>KOG0055 consensus
Probab=97.15 E-value=0.017 Score=37.75 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=34.9
Q ss_pred HHHCC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 88659---8578708999549875188999999999850398199998646
Q gi|254780334|r 81 RVTGG---GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 81 rvLGG---Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
.+|.| =+++|..+.+.|+.|+||||+. |+....-.....-+++.|+.
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i-~LL~RfydP~~G~V~iDG~d 416 (1228)
T KOG0055 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLI-QLLARFYDPTSGEVLIDGED 416 (1228)
T ss_pred HHHCCEEEEECCCCEEEEECCCCCCHHHHH-HHHHHHCCCCCCEEEECCCC
T ss_conf 433775798279988999889998799999-99997268878659976856
No 404
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.14 E-value=0.013 Score=38.71 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=84.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-CC--CCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752-01--5775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-LN--TINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l~--~~~~ 145 (479)
.+.+.||+.-+|-++ =+.+|+=+.|.|.+|+|||||+-+++.+.. ..-.|+..-||-..+ +..-.+. ++ ....
T Consensus 118 ~epl~TGIraID~l~--pig~GQR~gIf~g~GvGKs~Ll~~ia~~~~-adv~VialIGeR~re-v~efie~~~~~~~~~~ 193 (411)
T TIGR03496 118 DEPLDVGVRAINGLL--TVGRGQRIGIFAGSGVGKSVLLGMMARYTE-ADVVVVGLIGERGRE-VKEFIEEILGEEGLAR 193 (411)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEEECCCCCCCHHHHHHHHHHCCC-CCEEEEECCCCCHHH-HHHHHHHHHCCCCCCE
T ss_conf 762115834663446--614686313227999867799999975348-988999532530589-9999998622256521
Q ss_pred CHHEECCCC---HHH---------HHHHHHHCCCCCEEEECHHHHHHH---------H---HHCCCCCCHHHHHHHHHHH
Q ss_conf 100003478---899---------999997316982899721687665---------4---2044556367999999999
Q gi|254780334|r 146 SVYIAIETN---VED---------IIATLITNEKPDLVIIDSIQTLWS---------Q---TAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 146 ~i~~~~e~~---l~~---------il~~~i~~~~~~~vVIDSIQtl~~---------~---~~~s~~GsvsQvre~~~~L 201 (479)
.+.+.+..+ +.. +-+...++.+--++++||+..... . ...+.|+++.. ...+|
T Consensus 194 tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~vf~---~l~~l 270 (411)
T TIGR03496 194 SVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFA---KLPRL 270 (411)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH---HHHHH
T ss_conf 699994388998999999999999999999669946999746889999998999873799986678853888---87788
Q ss_pred HHHH---HHC--CCEEEEEEEECCCCCCCCHHH--HHHHHHEEEEEE
Q ss_conf 9975---307--978999863036654331145--787753027851
Q gi|254780334|r 202 IQYA---KKN--GVAMVLVGHVTKEGQIAGPRV--IEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~~A---K~~--~i~vilighvTK~G~iAGp~~--LeH~VD~vl~~e 241 (479)
..-| +.. .||.|.+-. +..+.+..|-. +--+.|..++|.
T Consensus 271 ~ERag~~~~~~GSIT~~~~V~-~~~dD~~dpi~d~~~~ilDG~ivLs 316 (411)
T TIGR03496 271 VERAGNGEEGKGSITAFYTVL-VEGDDQQDPIADAARAILDGHIVLS 316 (411)
T ss_pred HHHCCCCCCCCEEEEEEEEEE-CCCCCCCCCHHHHHHHHEEEEEEEC
T ss_conf 874368999898687735897-5798756645776565140489993
No 405
>PRK03839 putative kinase; Provisional
Probab=97.14 E-value=0.0034 Score=42.81 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89995498751889999999998503981999
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITY 123 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY 123 (479)
+++|+|.||+||||++-+++..+ |.+++-
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~l---g~~~i~ 30 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKL---GYEYVN 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCEEEE
T ss_conf 89997899999899999999976---987987
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=97.14 E-value=0.0028 Score=43.42 Aligned_cols=139 Identities=22% Similarity=0.234 Sum_probs=80.5
Q ss_pred CCEECCCCCCCCC--CCCCCCC--HHHHHHH-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-------CCCCEEEE
Q ss_conf 6403133345566--6323781--2488886-598578708999549875188999999999850-------39819999
Q gi|254780334|r 57 SLFMLSEESIEEE--SRIQTHI--DELDRVT-GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAY-------KKHRITYV 124 (479)
Q Consensus 57 ~~~~l~~~~~~~~--~Ri~TGi--~eLDrvL-GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-------~g~~vlYv 124 (479)
+++.|+++..-.. -|=.-|. +=|+.+. -.|-+ ..|||-|||=+|||||+-.+|..++. +|.||-.|
T Consensus 87 ~vk~ik~v~S~NiRIaRE~~G~A~~~~~yL~d~~~~~--~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgiv 164 (282)
T TIGR02858 87 KVKTIKNVASLNIRIAREVLGAADKILPYLVDRNGRV--LNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIV 164 (282)
T ss_pred CEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCCE--EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 4645105464213302000577566688773058944--67888868898851048889888607854246899746998
Q ss_pred ECCCCHHHHHHHHHHCCCCCCCHH----EECC-CCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 864630478888752015775100----0034-78899999997316982899721687665420445563679999999
Q gi|254780334|r 125 SGEEAIGQIRLRAQRLNTINSSVY----IAIE-TNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQ 199 (479)
Q Consensus 125 S~EEs~~Qi~~Ra~Rl~~~~~~i~----~~~e-~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~ 199 (479)
+ |=|. |+- =--|++.-++= ++.. ---|-++ .+|+...|+++|.|=|=+. -. ..
T Consensus 165 D-ERSE--IAg--C~~GvPQ~~vG~RtDVLD~CPKAEGmM-M~iRSMSP~Viv~DEIGr~---------ED-------~~ 222 (282)
T TIGR02858 165 D-ERSE--IAG--CVNGVPQLDVGIRTDVLDGCPKAEGMM-MLIRSMSPDVIVVDEIGRE---------ED-------VE 222 (282)
T ss_pred E-CCHH--HHH--HCCCCCCCCCCCCEEECCCCCHHHHHH-HHHHCCCCCEEEEECCCCH---------HH-------HH
T ss_conf 4-3246--565--458824144676067517885378999-9997069857998148895---------33-------89
Q ss_pred HHHHHHHHCCCEEEEEEEECC
Q ss_conf 999975307978999863036
Q gi|254780334|r 200 AMIQYAKKNGVAMVLVGHVTK 220 (479)
Q Consensus 200 ~L~~~AK~~~i~vilighvTK 220 (479)
.|+ -|-..|+++|.+.|=..
T Consensus 223 Al~-eA~naGV~~I~TaHg~~ 242 (282)
T TIGR02858 223 ALL-EALNAGVSVIATAHGRD 242 (282)
T ss_pred HHH-HHHCCCCEEEEEECCCC
T ss_conf 999-98616756887640488
No 407
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=97.14 E-value=0.0039 Score=42.43 Aligned_cols=116 Identities=22% Similarity=0.358 Sum_probs=74.5
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHHCCCCC
Q ss_conf 5666323781248888659857870899954987518899999999985039819999--86463047888875201577
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYV--SGEEAIGQIRLRAQRLNTIN 144 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYv--S~EEs~~Qi~~Ra~Rl~~~~ 144 (479)
.+.--+|---++|=+-+ |+-|--=+|+.||||+|||-|+-.+|... .+-|+ -+-|=.... + +
T Consensus 135 ~E~v~LPlk~PeLF~~v--GI~PPKGvLLyGPPGtGKTLlAKAvA~et-----~ATFIrvVgSElV~Ky------I---G 198 (364)
T TIGR01242 135 REAVELPLKKPELFEEV--GIEPPKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSELVRKY------I---G 198 (364)
T ss_pred HHHHHCCCCCCHHHHHC--CCCCCCCEEEECCCCCCHHHHHHHHHCCC-----CCEEEEEEHHHHHHHH------H---C
T ss_conf 88873468883167762--88989865700757976889999863145-----5126886044444444------1---3
Q ss_pred CCHHEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 510000347889999999731698289972168766542044556367999999999997530
Q gi|254780334|r 145 SSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKK 207 (479)
Q Consensus 145 ~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~ 207 (479)
+. ..-+.++.. +..++.|.+++||-|-++-..-+++..+. .||+-..|+++.-+
T Consensus 199 EG-----ArLV~~~F~-LAkEKaPsIiFIDEiDAiaakR~~~~TsG---dREV~RTlmQLLAE 252 (364)
T TIGR01242 199 EG-----ARLVREVFE-LAKEKAPSIIFIDEIDAIAAKRVDSSTSG---DREVQRTLMQLLAE 252 (364)
T ss_pred CH-----HHHHHHHHH-HHHCCCCCEEEEECHHHHHHHHCCCCCCC---CHHHHHHHHHHHHH
T ss_conf 31-----689999999-85306981686101333543211467787---31578899999975
No 408
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.012 Score=38.76 Aligned_cols=138 Identities=21% Similarity=0.378 Sum_probs=79.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--HHHHHHHH--HHCCCCCCCHHEECC-CCHHHH--
Q ss_conf 85787089995498751889999999998503981999986463--04788887--520157751000034-788999--
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA--IGQIRLRA--QRLNTINSSVYIAIE-TNVEDI-- 158 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs--~~Qi~~Ra--~Rl~~~~~~i~~~~e-~~l~~i-- 158 (479)
-+.+|++.=|.|..|.|||||.--+ ..+.+....-+++.+++- .....+|. .++|+....+.+++. |-.+++
T Consensus 28 ~I~~GeI~GIIG~SGAGKSTLiR~i-N~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~ 106 (339)
T COG1135 28 EIPKGEIFGIIGYSGAGKSTLLRLI-NLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106 (339)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHH
T ss_conf 8738868999748888678899998-565799886499868740217867899988650278215210342407765200
Q ss_pred ---------------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ---------------------------------------------99997316982899721687665420445563679
Q gi|254780334|r 159 ---------------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 159 ---------------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
++.++ ..+|+++.-|-......+. -
T Consensus 107 PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL-a~~P~iLL~DEaTSALDP~---------T 176 (339)
T COG1135 107 PLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL-ANNPKILLCDEATSALDPE---------T 176 (339)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHCCCCHHHHHHHHHHH-HCCCCEEEECCCCCCCCHH---------H
T ss_conf 27653998889999999999982980132169012485124699999997-2499889735842337867---------7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 9999999999753079789998630366543311457877530278515
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~eg 242 (479)
.+.+..-|.++-++.++++++|-| -..++..+.|-|..++.
T Consensus 177 T~sIL~LL~~In~~lglTIvlITH--------em~Vvk~ic~rVavm~~ 217 (339)
T COG1135 177 TQSILELLKDINRELGLTIVLITH--------EMEVVKRICDRVAVLDQ 217 (339)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHHHEEEEC
T ss_conf 999999999989972978999916--------08999998413047447
No 409
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.13 E-value=0.021 Score=37.02 Aligned_cols=165 Identities=15% Similarity=0.210 Sum_probs=84.8
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-C--CCCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752-0--15775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-L--NTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l--~~~~~ 145 (479)
.+.+.|||.-+|-++ =+.+|+=+.|.|..|+|||||+-+++.+. ...-.|.+.-||-..+ ++.-.+. + +....
T Consensus 149 ~epl~TGIraID~l~--pigrGQR~gIfggsGvGKS~Ll~~i~r~~-~adv~Vi~lIGERgrE-v~efi~~~l~~~~~~~ 224 (451)
T PRK05688 149 SEPLDVGIRSINGLL--TVGRGQRLGLFAGTGVGKSVLLGMMTRFT-EADIIVVGLIGERGRE-VKEFIEHILGEEGLKR 224 (451)
T ss_pred CCCEECCCEEEECCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEEEEEEEHHH-HHHHHHHHHHCCCCCE
T ss_conf 862003846884546--72467564210488986899999998852-7986999961277599-9999999851567430
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHHH------------HHHCCCCCCHHHHHHHHHHH
Q ss_conf 100003478---89---------9999997316982899721687665------------42044556367999999999
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLWS------------QTAESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~~------------~~~~s~~GsvsQvre~~~~L 201 (479)
.+.+....+ +. .+-+...++.+--++++||+..... +...+.|+++. ....+|
T Consensus 225 svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~gepP~~~GYppsvf---~~l~~L 301 (451)
T PRK05688 225 SVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVF---AKLPKL 301 (451)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHH
T ss_conf 58983388898799999998765589999867982599970557778888889987589987668784488---773788
Q ss_pred HHHHH---H--CCCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 99753---0--79789998630366543311--45787753027851
Q gi|254780334|r 202 IQYAK---K--NGVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~~AK---~--~~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~e 241 (479)
..-|- + --||.|-+-. +..+.+..| ..+--+.|..+++.
T Consensus 302 lERag~~~~g~GSITal~tVl-v~gdD~~dPi~d~~~silDGhIvLs 347 (451)
T PRK05688 302 VERAGNAEPGGGSITAFYTVL-SEGDDQQDPIADSARGVLDGHIVLS 347 (451)
T ss_pred HHHHCCCCCCCCCEEEEEEEE-CCCCCCCCCCHHHHHHHCCCEEEEC
T ss_conf 864137999992201646775-0388767773344565506259984
No 410
>PRK13544 consensus
Probab=97.13 E-value=0.0081 Score=40.09 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=30.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|.++.+.|+-|+|||||+--++.-.....+.+. +.++
T Consensus 23 ~i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~p~~G~I~-~~G~ 63 (208)
T PRK13544 23 TAKQNSLTLVIGNNGSGKTSLLRLLAGLIPITHGNIK-YNGE 63 (208)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-ECCE
T ss_conf 9829949999999999899999999588068974899-9999
No 411
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=97.11 E-value=0.0038 Score=42.48 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=49.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEE--------CCCCHHHHHHHHH
Q ss_conf 89995498751889999999998503981999986463047888875201577510000--------3478899999997
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIA--------IETNVEDIIATLI 163 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~--------~e~~l~~il~~~i 163 (479)
+++++|-+|+|||||+.+++.. .+.+.++..+-.|-...-+ -++.+......+.-+ ...++...+..+.
T Consensus 2 v~iitGFLGsGKTTll~~ll~~-~~~~~~~avI~Ne~g~~~i--D~~ll~~~~~~v~el~~GciCc~~~~d~~~~l~~l~ 78 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRD-NREGLKIAVIVNDFGETGI--DAELLRETGAEIVELNNGCICCTIREDLSMVLEALL 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHH--HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 6999348878899999999984-4489847999933653020--799987069618997488664543336999999998
Q ss_pred H--CCCCCEEEECHH
Q ss_conf 3--169828997216
Q gi|254780334|r 164 T--NEKPDLVIIDSI 176 (479)
Q Consensus 164 ~--~~~~~~vVIDSI 176 (479)
+ ..+|+.++|.+-
T Consensus 79 ~~~~~~~d~iiIE~s 93 (174)
T pfam02492 79 ELKLPRLDLLFIETT 93 (174)
T ss_pred HCCCCCCCEEEEECC
T ss_conf 557899999999587
No 412
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=97.11 E-value=0.0031 Score=43.18 Aligned_cols=109 Identities=20% Similarity=0.323 Sum_probs=58.0
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECC----------------------
Q ss_conf 9549875188999999999850398199998646304788887520157751000034----------------------
Q gi|254780334|r 95 VGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIE---------------------- 152 (479)
Q Consensus 95 i~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e---------------------- 152 (479)
|=|+.|||||||+.-+|.=-.-..++ +.+++|+ ..++.-.-..++....+.-+++-
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~pd~G~-i~ldg~d-~~~vPp~~R~in~vFQsYALFPHMTv~~NvAfgLk~~k~~~~ei~ 78 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGS-IMLDGED-VTEVPPHLRSINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCE-EEECCCC-CCCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCHHHHH
T ss_conf 97888874799999983458777550-7756710-121572206146057354356212277645444351788856688
Q ss_pred --------------------CCHH----H--HHHHHHHCCCCCEEEEC-HHHHHHHHHHCCCCCCHHHHHH-HHHHHHHH
Q ss_conf --------------------7889----9--99999731698289972-1687665420445563679999-99999997
Q gi|254780334|r 153 --------------------TNVE----D--IIATLITNEKPDLVIID-SIQTLWSQTAESSPGTVIQVRT-SVQAMIQY 204 (479)
Q Consensus 153 --------------------~~l~----~--il~~~i~~~~~~~vVID-SIQtl~~~~~~s~~GsvsQvre-~~~~L~~~ 204 (479)
+.+. + .++..+- .+|+++.+| |+.++... +|+ .=.+|+.+
T Consensus 79 ~RV~e~L~~V~L~~~a~rkp~qLSGGQ~QRvAlARa~v-~kPk~LLlDEpLsALD~k-----------LR~~MQ~ELk~~ 146 (331)
T TIGR01187 79 PRVKEALRLVQLEEFAKRKPHQLSGGQQQRVALARALV-FKPKILLLDEPLSALDKK-----------LRDQMQLELKTL 146 (331)
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHH-CCCCEEEECCCHHHHHHH-----------HHHHHHHHHHHH
T ss_conf 99999974213001104673104685289999999986-089567711772264389-----------899889999999
Q ss_pred HHHCCCEEEEEEE
Q ss_conf 5307978999863
Q gi|254780334|r 205 AKKNGVAMVLVGH 217 (479)
Q Consensus 205 AK~~~i~viligh 217 (479)
.++.|||+++|-|
T Consensus 147 ~~~LGiT~v~VTH 159 (331)
T TIGR01187 147 QEQLGITFVFVTH 159 (331)
T ss_pred HHHCCCEEEEEEC
T ss_conf 8726828999701
No 413
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.018 Score=37.56 Aligned_cols=136 Identities=21% Similarity=0.347 Sum_probs=76.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHC-----CCCCEEEEECCC----CHHHH-HHHHHHCCCCCCC-HHEE----
Q ss_conf 8578708999549875188999999999850-----398199998646----30478-8887520157751-0000----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAY-----KKHRITYVSGEE----AIGQI-RLRAQRLNTINSS-VYIA---- 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-----~g~~vlYvS~EE----s~~Qi-~~Ra~Rl~~~~~~-i~~~---- 150 (479)
-+.+|.+.-|.|+.|+||||+++.+..-+-. .++.++| .+++ +..+. +.|..++.....+ ...+
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f-~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~ 105 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILF-DGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM 105 (316)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEE-CCCCCCCCCHHHHHHHCCCEEEEEECCCHHHCCCHH
T ss_conf 8758968999838978899999999846688897486118998-896466699999986317568999748156449703
Q ss_pred ------------------------------C--------------CCC-----HHH-HHHHHHHCCCCCEEEECHHHHHH
Q ss_conf ------------------------------3--------------478-----899-99999731698289972168766
Q gi|254780334|r 151 ------------------------------I--------------ETN-----VED-IIATLITNEKPDLVIIDSIQTLW 180 (479)
Q Consensus 151 ------------------------------~--------------e~~-----l~~-il~~~i~~~~~~~vVIDSIQtl~ 180 (479)
. +.. .+- +++. .-..+|+++|-|=..|-.
T Consensus 106 ~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAm-al~~~P~LlIADEPTTAL 184 (316)
T COG0444 106 TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAM-ALALNPKLLIADEPTTAL 184 (316)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHH-HHHCCCCEEEECCCCCHH
T ss_conf 4999999999985141136899999999999769998789986198355871899999999-985899889967986045
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEE
Q ss_conf 542044556367999999999997530797899986303665433114578775302785
Q gi|254780334|r 181 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF 240 (479)
Q Consensus 181 ~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ 240 (479)
... .| .++...|.++.++++.++++|-| ...++-.+.|.|.-+
T Consensus 185 Dvt--------vQ-aqIl~ll~~l~~e~~~siilITH--------Dl~vva~~aDrv~VM 227 (316)
T COG0444 185 DVT--------VQ-AQILDLLKELQREKGTALILITH--------DLGVVAEIADRVAVM 227 (316)
T ss_pred HHH--------HH-HHHHHHHHHHHHHCCCEEEEEEC--------CHHHHHHHCCEEEEE
T ss_conf 199--------99-99999999999854978999948--------889999745668998
No 414
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.11 E-value=0.004 Score=42.32 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 59857870899954987518899999999
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAA 112 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~ 112 (479)
.=-+.+|..+.|.|+.|+|||||+--+..
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 27767998899987999988999999836
No 415
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.11 E-value=0.012 Score=38.78 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=25.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 85787089995498751889999999998
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASL 114 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~ 114 (479)
=+.+|..+-|.|+.|+|||||+.-++.-.
T Consensus 59 ~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 98499999999999981999999995787
No 416
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.10 E-value=0.026 Score=36.47 Aligned_cols=135 Identities=20% Similarity=0.286 Sum_probs=77.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHH
Q ss_conf 5787089995498751889999999998503--98199998646304788887520157751000034788999999973
Q gi|254780334|r 87 FVRGSVILVGGDPGIGKSTLLMQTAASLAYK--KHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLIT 164 (479)
Q Consensus 87 l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~--g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~ 164 (479)
+..+..++|+|..|+|||||+-.++..+.+. .++ +++-|++.+- ....+.. -.++...+.++.++++...
T Consensus 141 V~~r~nilVsGgTGSGKTTllnaL~~~i~~~~p~eR--ivtIEDt~EL-~~~~~n~----v~l~~~~~v~~~~Ll~~aL- 212 (323)
T PRK13833 141 ISSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDR--LVILEDTAEI-QCAAENA----VLLHTSDTVDMARLLKSTM- 212 (323)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHE--EEEECCCCCC-CCCCCCE----EEEECCCCCCHHHHHHHHH-
T ss_conf 981896899917777568999999986402893233--9994575011-4678877----7875169869999999974-
Q ss_pred CCCCCEEEECHHH-----HHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 1698289972168-----7665420445563679-----99999999997530797899986303665433114578775
Q gi|254780334|r 165 NEKPDLVIIDSIQ-----TLWSQTAESSPGTVIQ-----VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMV 234 (479)
Q Consensus 165 ~~~~~~vVIDSIQ-----tl~~~~~~s~~GsvsQ-----vre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~V 234 (479)
..+||.+|+-=+. .+...--.+.+|+++- .++...+|..++.+.. .-+=...+--.+
T Consensus 213 RmrPDRIivGEvRG~EA~~~L~A~nTGH~Gs~tTiHAnsa~~al~RL~~l~~~~~-------------~~~~~~~ia~av 279 (323)
T PRK13833 213 RLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHSNTAMSALRRLEQLTAEAS-------------QQPMQEVIGEAV 279 (323)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHC
T ss_conf 4699758883006599999999982799986348657999999999999988526-------------377999999868
Q ss_pred HEEEEEEC
Q ss_conf 30278515
Q gi|254780334|r 235 DAVLYFEG 242 (479)
Q Consensus 235 D~vl~~eg 242 (479)
|.++|.+-
T Consensus 280 dviV~i~r 287 (323)
T PRK13833 280 DLIVSIER 287 (323)
T ss_pred CEEEEEEE
T ss_conf 89999987
No 417
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0039 Score=42.43 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=12.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 857870899954987518899999999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAA 112 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~ 112 (479)
|+.+-..+|+.|+||+|||.|+..++.
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 898883699988999758999999875
No 418
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.016 Score=37.94 Aligned_cols=136 Identities=17% Similarity=0.226 Sum_probs=68.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC---------------HHH------------------
Q ss_conf 85787089995498751889999999998503981999986463---------------047------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA---------------IGQ------------------ 132 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs---------------~~Q------------------ 132 (479)
-+.+|.++-|-|+.|||||||+--+|.-. +.....+++.+++- .-.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~ 103 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS 103 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHEEHHHCCCCC
T ss_conf 87799799998999788999999996878-77775599888215789987799926676451466884435044125656
Q ss_pred -------HHHHHHHCCCCCCCHHEECCCC--HHHH--HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHH-HH
Q ss_conf -------8888752015775100003478--8999--9999731698289972168766542044556367999999-99
Q gi|254780334|r 133 -------IRLRAQRLNTINSSVYIAIETN--VEDI--IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSV-QA 200 (479)
Q Consensus 133 -------i~~Ra~Rl~~~~~~i~~~~e~~--l~~i--l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~-~~ 200 (479)
+....+..|+..-.-....+.+ +.+- ++... -..|+++..|=-= +-+| .+.|+.. ..
T Consensus 104 ~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL-~~~P~lLLlDEPF----gALD------alTR~~lq~~ 172 (248)
T COG1116 104 KAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL-ATRPKLLLLDEPF----GALD------ALTREELQDE 172 (248)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCC----CHHH------HHHHHHHHHH
T ss_conf 176899999999975974210169600184799999999997-1499979876974----1201------9999999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 99975307978999863036654331145787753027851
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
|.++.++.+.++++|-|--.+- -.+.|.|+-+.
T Consensus 173 l~~lw~~~~~TvllVTHdi~EA--------v~LsdRivvl~ 205 (248)
T COG1116 173 LLRLWEETRKTVLLVTHDVDEA--------VYLADRVVVLS 205 (248)
T ss_pred HHHHHHHHCCEEEEEECCHHHH--------HHHHCEEEEEC
T ss_conf 9999996498899990898999--------76508899964
No 419
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.09 E-value=0.0099 Score=39.48 Aligned_cols=148 Identities=26% Similarity=0.382 Sum_probs=78.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH--HHCCCCCCCHHEEC------------
Q ss_conf 8578708999549875188999999999850398199998646304788887--52015775100003------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRA--QRLNTINSSVYIAI------------ 151 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra--~Rl~~~~~~i~~~~------------ 151 (479)
-+.+|...-|.|+.|+|||||+--+....--..+. +-.++-+ .+|..... +..|-...++.++.
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~-VRLDga~-l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~ 435 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGS-VRLDGAD-LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE 435 (580)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC-EEECCHH-HHCCCHHHHCCCCCCCCCCCEECCCCHHHHHHHCCC
T ss_conf 76588667887888765778999998113567873-7756264-512798885113172765430057719999873166
Q ss_pred CCCHHHH----------------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH
Q ss_conf 4788999----------------------------------------999973169828997216876654204455636
Q gi|254780334|r 152 ETNVEDI----------------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTV 191 (479)
Q Consensus 152 e~~l~~i----------------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gsv 191 (479)
+.+-+.+ ++. .-...|.+||.|--. +++|+. |
T Consensus 436 ~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR-AlYG~P~lvVLDEPN----sNLD~~-G-- 507 (580)
T COG4618 436 EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR-ALYGDPFLVVLDEPN----SNLDSE-G-- 507 (580)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCCCCEEEECCCC----CCCCHH-H--
T ss_conf 68879999999873758999717687667657898877723789999999-970897089955898----776526-7--
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 79999999999975307978999863036654331145787753027851555666544215676320256765127
Q gi|254780334|r 192 IQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIG 268 (479)
Q Consensus 192 sQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~g 268 (479)
.....+-+.-+|..++++++|-|- |.. -..+|-++.++.- |+ +.||+.+|+-
T Consensus 508 ---E~AL~~Ai~~~k~rG~~vvviaHR--------Ps~-L~~~Dkilvl~~G--------~~-----~~FG~r~eVL 559 (580)
T COG4618 508 ---EAALAAAILAAKARGGTVVVIAHR--------PSA-LASVDKILVLQDG--------RI-----AAFGPREEVL 559 (580)
T ss_pred ---HHHHHHHHHHHHHCCCEEEEEECC--------HHH-HHHCCEEEEECCC--------HH-----HHCCCHHHHH
T ss_conf ---999999999999769879999267--------778-8515534422388--------47-----7419778999
No 420
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.08 E-value=0.013 Score=38.62 Aligned_cols=50 Identities=30% Similarity=0.271 Sum_probs=33.8
Q ss_pred CCCCCCCCCHHHHHHHCCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 666323781248888659857-87089995498751889999999998503981
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFV-RGSVILVGGDPGIGKSTLLMQTAASLAYKKHR 120 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~-~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~ 120 (479)
-..|+-+..-.|+. | =++ +|.++-|.|+-|+|||||+--++.-+.-..++
T Consensus 6 ~~~~yg~~~~~l~~-L--~ipk~GEi~gLiGpNGaGKSTLlk~i~Gll~P~~G~ 56 (255)
T cd03236 6 PVHRYGPNSFKLHR-L--PVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK 56 (255)
T ss_pred CCEECCCCCEEEEC-C--CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 72135899736517-8--989898099998999970999999996798688754
No 421
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.08 E-value=0.002 Score=44.48 Aligned_cols=57 Identities=25% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6656403133345566632378124888865985787089995498751889999999998
Q gi|254780334|r 54 HSISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASL 114 (479)
Q Consensus 54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~ 114 (479)
...+|..|+|+-.++. +----.-|-+++-.|-.+ .+++.||||+|||||+.-++...
T Consensus 20 ~rmRP~~Lde~vGQ~h--llg~g~~Lrr~i~~~~~~--S~Il~GPPGtGKTTLA~iIA~~t 76 (726)
T PRK13341 20 DRLRPRTLEEFVGQDH--ILGEGRLLRRAIKADRVG--SLILYGPPGVGKTTLARIIANHT 76 (726)
T ss_pred HHHCCCCHHHHCCCHH--HCCCCCHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8629998777359575--428982899999769998--27888979999999999998874
No 422
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=97.07 E-value=0.0031 Score=43.17 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=35.1
Q ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHH
Q ss_conf 8708999549-875188999999999850-39819999864630478
Q gi|254780334|r 89 RGSVILVGGD-PGIGKSTLLMQTAASLAY-KKHRITYVSGEEAIGQI 133 (479)
Q Consensus 89 ~Gs~~Li~G~-PGvGKSTL~Lqia~~~a~-~g~~vlYvS~EEs~~Qi 133 (479)
.+.+++|+.. ||.||||++..+|.++++ .|++||.|.+.--...+
T Consensus 34 ~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l 80 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSL 80 (207)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 88099997899999889999999999997249859999535789971
No 423
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.07 E-value=0.027 Score=36.24 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=21.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 85787089995498751889999999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTA 111 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia 111 (479)
-+.+|.++.|.|+-|+|||||++...
T Consensus 17 ~i~~Ge~~aIvG~nGsGKSTL~~~~l 42 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 98599899998789960989836166
No 424
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.014 Score=38.43 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=29.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 85787089995498751889999999998503981999
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITY 123 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlY 123 (479)
-+.+|.++-|.|+-|+|||||+-.++.-+....+.+.|
T Consensus 23 ~i~~Gei~~liGpNGaGKSTLlk~l~Gl~~p~~G~I~~ 60 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 98389799999999980999999996688888607999
No 425
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.021 Score=37.12 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
..+|++++.|=..+. +| ....++.. .+.+..++.+.++++|-|
T Consensus 156 ~~~p~lliLDEPts~----LD-----~~~~~~l~-~~l~~l~~~G~til~isH 198 (501)
T PRK11288 156 MRNARVIAFDEPTSS----LS-----AREIEQLF-RVIRELRAEGRVILYVSH 198 (501)
T ss_pred HCCCCEEEECCCCCC----CC-----HHHHHHHH-HHHHHHHHHCCCEEEECC
T ss_conf 609989996587456----89-----89999998-899999872761265133
No 426
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.05 E-value=0.021 Score=37.13 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 8578708999549875188999999999850398199
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRIT 122 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vl 122 (479)
-+.+|.++.|.|+-|+|||||+--++.-.....+.+.
T Consensus 22 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~sG~i~ 58 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL 58 (201)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 8879959999999999999999999667788852999
No 427
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.05 E-value=0.0081 Score=40.10 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=32.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 899954987518899999999985039819999864
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
+....|-.|+||||++.++|.++++.|++|..+.++
T Consensus 2 i~v~s~kggvgkst~~~~la~~l~~~g~~v~~~d~d 37 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 899749998819999999999999879978999713
No 428
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.05 E-value=0.031 Score=35.86 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=30.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8578708999549875188999999999850398199998646
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
-+.+|.++-|.|+-|+|||||+.-++.-..-..+ -+++.+.+
T Consensus 24 ~v~~Gei~~liGpNGaGKSTLl~~i~Gl~~p~~G-~I~~~G~~ 65 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG-SVLFGGTD 65 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCE-EEEECCEE
T ss_conf 9889989999989997599999999679578855-99999998
No 429
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.03 E-value=0.0011 Score=46.34 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=33.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 899954987518899999999985039819999864
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
+++++|--|+||||++..+|.++|++|+|||.+|.+
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~D 36 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTD 36 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 989978996619999999999999689949999589
No 430
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.03 E-value=0.0091 Score=39.74 Aligned_cols=148 Identities=20% Similarity=0.326 Sum_probs=84.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE-ECCCCHHH-HHHHHHHCCCCCC--CHHEECCCCHHHHHHHHHHCC
Q ss_conf 0899954987518899999999985039819999-86463047-8888752015775--100003478899999997316
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYV-SGEEAIGQ-IRLRAQRLNTINS--SVYIAIETNVEDIIATLITNE 166 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYv-S~EEs~~Q-i~~Ra~Rl~~~~~--~i~~~~e~~l~~il~~~i~~~ 166 (479)
.+++-+=..|+||||+.+-++..++++|.+|.=+ +|-+-..+ +...+ .+..+. +.+++.+..+...+... ..
T Consensus 5 ~lmI~gt~S~~GKT~vt~gL~r~l~~rG~~VapFK~GPDyIdp~~~~~a--~g~~~~nLD~~l~~~~~v~~~~~~~--~~ 80 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAFHAAA--TGRPSRNLDSWMMGEDLVRALFARA--AG 80 (451)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH--HCCCCCCCCHHHCCHHHHHHHHHHH--CC
T ss_conf 7999868999978999999999999687945753578576298999999--7897535883448999999999975--46
Q ss_pred CCCEEEECHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCC
Q ss_conf 982899721687665420-4455636799999999999753079789998630366543311457877530278515556
Q gi|254780334|r 167 KPDLVIIDSIQTLWSQTA-ESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTR 245 (479)
Q Consensus 167 ~~~~vVIDSIQtl~~~~~-~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~ 245 (479)
..|++||.=..-+|.... .+..||..+ +||..+.||+|| +...|.. ..+-.++-+...|+.
T Consensus 81 ~~D~~viEG~mGlyDG~~~~~~~gS~ae----------iA~~l~~PViLV--iD~~~~~---~s~aa~v~G~~~~~~--- 142 (451)
T PRK01077 81 GADIAVIEGVMGLFDGAGGDPDKGSTAD----------IARLLGAPVVLV--VDASGMA---QSAAALVLGFARFDP--- 142 (451)
T ss_pred CCCEEEEEECHHCCCCCCCCCCCCCHHH----------HHHHHCCCEEEE--ECCCCHH---HHHHHHHHHHHHHCC---
T ss_conf 6888998501011345456777777899----------998709988999--8466208---999999999997597---
Q ss_pred CCCCCCEEEEEEEECCCCC
Q ss_conf 6654421567632025676
Q gi|254780334|r 246 NTQYDYRILRSVKNRFGPT 264 (479)
Q Consensus 246 ~~~~~~R~Lr~~KNRfG~t 264 (479)
..|+--++=|||++.
T Consensus 143 ----~~~I~GvIlNk~~g~ 157 (451)
T PRK01077 143 ----DLNIAGVILNRVGSE 157 (451)
T ss_pred ----CCCEEEEEEECCCCH
T ss_conf ----787748996247876
No 431
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.03 E-value=0.024 Score=36.64 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-C--CCCCCC
Q ss_conf 6323781248888659857870899954987518899999999985039819999864630478888752-0--157751
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-L--NTINSS 146 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l--~~~~~~ 146 (479)
+.+.|||.-+|-++ =+.+|+=+.|.|.+|+|||+|+-+++.+. ...-.|++.-||-..+ +..-.+. + +.....
T Consensus 142 epl~TGIkaID~l~--pigrGQRigIf~gsGvGKS~Ll~~i~r~~-~advvVi~lIGERgrE-v~efie~~l~~~~~~rs 217 (440)
T PRK08972 142 EPLDVGVRAINAML--TVGKGQRMGLFAGSGVGKSVLLGMMTRGT-TADVIVVGLVGERGRE-VKEFIEEILGEEGRARS 217 (440)
T ss_pred CCCCCCCEEEECCC--CCCCCCEEEECCCCCCCHHHHHHHHHHCC-CCCEEEEEEECEEHHH-HHHHHHHHHCCCCCEEE
T ss_conf 61015834563436--71246466631578975899998887514-7878999862313699-99999998504774478
Q ss_pred HHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 00003478---89---------99999973169828997216876
Q gi|254780334|r 147 VYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 147 i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl 179 (479)
+.+....+ +. .+-+...++.+--++++||+...
T Consensus 218 vvV~atsd~~p~~R~~a~~~A~tiAEyFrd~G~~VLl~~DslTR~ 262 (440)
T PRK08972 218 VVVAAPADTSPLMRLKGCETATRIAEYFRDQGLNVLLLMDSLTRY 262 (440)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 999704888868899999999988999996799779996355677
No 432
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.02 E-value=0.017 Score=37.78 Aligned_cols=133 Identities=21% Similarity=0.243 Sum_probs=74.9
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH------------------
Q ss_conf 63237812488886598578708999549875188999999999850398199998646304------------------
Q gi|254780334|r 70 SRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG------------------ 131 (479)
Q Consensus 70 ~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~------------------ 131 (479)
.|++ |+-.+|.| .=-+.+|.+.-+-|+-|.|||||+--+ ..+.+...--+|+.|.+-..
T Consensus 12 K~f~-~~~And~V-~l~v~~GeIHaLLGENGAGKSTLm~iL-~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF 88 (501)
T COG3845 12 KRFP-GVVANDDV-SLSVKKGEIHALLGENGAGKSTLMKIL-FGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF 88 (501)
T ss_pred EECC-CEEECCCE-EEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEECCEEECCCCHHHHHHCCCCEEEECC
T ss_conf 8708-77863761-245637748999606887799999998-47305886359999998246997999970884896043
Q ss_pred ---------------------------HHHHH----HHHCCCCCCCHHEECCCCH-----HHHHHHHHHCCCCCEEEECH
Q ss_conf ---------------------------78888----7520157751000034788-----99999997316982899721
Q gi|254780334|r 132 ---------------------------QIRLR----AQRLNTINSSVYIAIETNV-----EDIIATLITNEKPDLVIIDS 175 (479)
Q Consensus 132 ---------------------------Qi~~R----a~Rl~~~~~~i~~~~e~~l-----~~il~~~i~~~~~~~vVIDS 175 (479)
+.+.+ .+|.|+.-+.-....+..+ -+|+..+ ..+++++|.|-
T Consensus 89 ~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL--yr~a~iLILDE 166 (501)
T COG3845 89 MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL--YRGARLLILDE 166 (501)
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHH--HCCCCEEEECC
T ss_conf 0146500445542137643456567899999999999985999880006601780155788999998--64998899759
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 687665420445563679999999999975307978999863
Q gi|254780334|r 176 IQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 176 IQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
-.++. +++++.+....|. ..++.+.++++|-|
T Consensus 167 PTaVL---------TP~E~~~lf~~l~-~l~~~G~tIi~ITH 198 (501)
T COG3845 167 PTAVL---------TPQEADELFEILR-RLAAEGKTIIFITH 198 (501)
T ss_pred CCCCC---------CHHHHHHHHHHHH-HHHHCCCEEEEEEC
T ss_conf 75358---------9899999999999-99977997999935
No 433
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=97.01 E-value=0.011 Score=39.12 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=87.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHE-----ECCCCHHHHHHHHH-
Q ss_conf 708999549875188999999999850398199998646304788887520157751000-----03478899999997-
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYI-----AIETNVEDIIATLI- 163 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~-----~~e~~l~~il~~~i- 163 (479)
-+.+||.|.||.||||+.-++ .| +.|.+|...|..=+. | .+++-+ -....++++.+.+.
T Consensus 13 ~~~~lIYG~~G~GKTS~~K~l------~G-ktL~l~~D~SSkVL~------G--~~nvdiim~~~d~~~~~~~~~e~~~~ 77 (229)
T TIGR01618 13 YFRYLIYGKPGLGKTSTIKYL------PG-KTLVLSLDKSSKVLA------G--DENVDIIMADLDDEKPIQEMVEFYKE 77 (229)
T ss_pred CCEEEEECCCCCCCCCEEEEC------CC-CEEEEECCCCCCCCC------C--CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 636888758988723056645------88-789883678644346------8--99833899860699847899999999
Q ss_pred ----HCCCCCEEEECHHHHHHHHHHC-----CCC-CC-----HHHHHHHHHHHHHHHHH-CCCEEEEEEEECCC------
Q ss_conf ----3169828997216876654204-----455-63-----67999999999997530-79789998630366------
Q gi|254780334|r 164 ----TNEKPDLVIIDSIQTLWSQTAE-----SSP-GT-----VIQVRTSVQAMIQYAKK-NGVAMVLVGHVTKE------ 221 (479)
Q Consensus 164 ----~~~~~~~vVIDSIQtl~~~~~~-----s~~-Gs-----vsQvre~~~~L~~~AK~-~~i~vilighvTK~------ 221 (479)
...+++-+|||-|..++..-+. +-- ++ -+++......|....++ .+..++...|=+..
T Consensus 78 ~~~~~~~~Y~niViDNis~lq~~~L~~~gr~~K~~~~p~~q~Y~~~~~~~~d~~~vl~~l~~~~i~~tAwe~~~~~~~e~ 157 (229)
T TIGR01618 78 LQNIQAEEYDNIVIDNISELQKLWLINLGREAKNGRSPELQHYQKLDLYFLDLLTVLKELKNKNIYVTAWEDTNQLSLES 157 (229)
T ss_pred HHCCHHHCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHH
T ss_conf 73225345765898142789999998468442457886500036888999999999985589879998765667534011
Q ss_pred CCCCC---H----HHHH---HHHHEEEEEE
Q ss_conf 54331---1----4578---7753027851
Q gi|254780334|r 222 GQIAG---P----RVIE---HMVDAVLYFE 241 (479)
Q Consensus 222 G~iAG---p----~~Le---H~VD~vl~~e 241 (479)
|+|-+ | |+|= =|+|.|..+-
T Consensus 158 G~iy~ry~pdir~kvlN~~lgl~DvVaRl~ 187 (229)
T TIGR01618 158 GQIYNRYLPDIREKVLNAFLGLTDVVARLV 187 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 466876667754788765503332345676
No 434
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.99 E-value=0.013 Score=38.69 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 85787089995498751889999999998503981999986
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
-+.+|..+-+.|+.|+|||||+.-++.-.....++++. .+
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg 390 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DG 390 (567)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-CC
T ss_conf 75489878885588885789999998615888836989-99
No 435
>pfam00931 NB-ARC NB-ARC domain.
Probab=96.99 E-value=0.0079 Score=40.18 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HHCCCCCEEEEECCC--CHHHHHHH-HHHCCCCCCCHHEECCCCHHHHHHHHHH
Q ss_conf 708999549875188999999999--850398199998646--30478888-7520157751000034788999999973
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAAS--LAYKKHRITYVSGEE--AIGQIRLR-AQRLNTINSSVYIAIETNVEDIIATLIT 164 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~--~a~~g~~vlYvS~EE--s~~Qi~~R-a~Rl~~~~~~i~~~~e~~l~~il~~~i~ 164 (479)
=.++-|.|.+|+|||||+.++... .......++|++.-. +...+... .+.++............++...+...+.
T Consensus 19 ~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~L~ 98 (285)
T pfam00931 19 LGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALL 98 (285)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 53999889995639999999971655650598389999797666899999999985666545555789999999999972
Q ss_pred CCCCCEEEECHHH
Q ss_conf 1698289972168
Q gi|254780334|r 165 NEKPDLVIIDSIQ 177 (479)
Q Consensus 165 ~~~~~~vVIDSIQ 177 (479)
. +.-++|+|-+.
T Consensus 99 ~-kr~LiVLDDVw 110 (285)
T pfam00931 99 R-KRFLLVLDDVW 110 (285)
T ss_pred C-CCEEEEECCCC
T ss_conf 7-96699963888
No 436
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=96.99 E-value=0.0014 Score=45.68 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=38.1
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 888865985787089995498751889999999998503981999986463
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA 129 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs 129 (479)
.+|.|+ =|-.|--+=+.||.|+||||||+++|... +.+|+.+.|...
T Consensus 11 ~~R~l~-yL~~G~PvHl~GPaG~GKT~LA~hvA~~r---~RPV~l~~Gd~e 57 (265)
T TIGR02640 11 TSRALR-YLKSGYPVHLRGPAGTGKTTLAMHVARKR---DRPVVLINGDAE 57 (265)
T ss_pred HHHHHH-HHCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCEEEEECCCC
T ss_conf 998766-32278866744788855689999999736---896899865823
No 437
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.98 E-value=0.0013 Score=45.82 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=34.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 89995498751889999999998503981999986463047888875201577
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTIN 144 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~ 144 (479)
++.|+|+||+||||.|-.+|..++ . =|||+ ..|+.-|++.|+.-
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Ls---l--~~iSa----G~iRelA~~~Gldl 45 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS---L--KLISA----GDIRELAEKMGLDL 45 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC---C--CEECC----CHHHHHHHHCCCCH
T ss_conf 788735896864789999998639---8--31202----00788986429887
No 438
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.017 Score=37.68 Aligned_cols=85 Identities=27% Similarity=0.337 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHH----HHHH
Q ss_conf 8708999549875188999999999850398199998646----3047888875201577510000347889----9999
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVE----DIIA 160 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~----~il~ 160 (479)
+-.++|+.|--|+||||-.-.+|..+.++|++|+...+.- ..+|++..++|+|+..-.-. ...|-. +-+.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~--~G~DpAaVafDAi~ 215 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK--EGADPAAVAFDAIQ 215 (340)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEECCC--CCCCCHHHHHHHHH
T ss_conf 8679999934888637179999999997898699982334789999999999999599278259--99980899999999
Q ss_pred HHHHCCCCCEEEECHH
Q ss_conf 9973169828997216
Q gi|254780334|r 161 TLITNEKPDLVIIDSI 176 (479)
Q Consensus 161 ~~i~~~~~~~vVIDSI 176 (479)
. ....+.|+|+||.-
T Consensus 216 ~-Akar~~DvvliDTA 230 (340)
T COG0552 216 A-AKARGIDVVLIDTA 230 (340)
T ss_pred H-HHHCCCCEEEEECC
T ss_conf 9-99769999999675
No 439
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.98 E-value=0.035 Score=35.50 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=67.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-----CCHHHHHH-HHHHCCCCCCCHHEECC--CCHHHHHHHHH
Q ss_conf 899954987518899999999985039819999864-----63047888-87520157751000034--78899999997
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE-----EAIGQIRL-RAQRLNTINSSVYIAIE--TNVEDIIATLI 163 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E-----Es~~Qi~~-Ra~Rl~~~~~~i~~~~e--~~l~~il~~~i 163 (479)
++++.|..-+|||+++-.++.+ .+..++|+..- |-.+.|+. |+.| ..-|..-| .++...+....
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~---~~~~v~YvAT~~a~D~Em~~RI~~Hr~rR-----p~~W~tvE~~~~l~~~L~~~~ 73 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGE---SGGQVLYVATGRAFDDEMQERIAHHRARR-----PEHWRTVEAPLDLATLLEALI 73 (175)
T ss_pred EEEEECCCCCCCHHHHHHHHHH---HCCCEEEEEECCCCCHHHHHHHHHHHHCC-----CCCCEEEECCCCHHHHHHHCC
T ss_conf 0898568667741899999985---18964999806778878999999998568-----876568864443899987444
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 316982899721687665420445563---67999999999997530797899986
Q gi|254780334|r 164 TNEKPDLVIIDSIQTLWSQTAESSPGT---VIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 164 ~~~~~~~vVIDSIQtl~~~~~~s~~Gs---vsQvre~~~~L~~~AK~~~i~vilig 216 (479)
...+.|.+|.+.+..+..+....-. ...+......|........-++++|.
T Consensus 74 --~~~~~VLvDcLt~wvtNll~~~e~~~~~~~~~~~~~~~L~~al~~~~~~~ilVs 127 (175)
T COG2087 74 --EPGDVVLVDCLTLWVTNLLFAGEKDWSAEAAIEAEIEALLAALSRAPGTVVLVS 127 (175)
T ss_pred --CCCCEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf --679879997588999998745643233055699999999998740786589996
No 440
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.97 E-value=0.0089 Score=39.82 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=30.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 857870899954987518899999999985039-8199998646
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK-HRITYVSGEE 128 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g-~~vlYvS~EE 128 (479)
-+.+|.++-|-|+.|+|||||+--++.-..-.+ .--+++.+++
T Consensus 27 ~i~~GE~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g~~ 70 (362)
T TIGR03258 27 EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD 70 (362)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEE
T ss_conf 99999899999999745999999997776777881799999999
No 441
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.97 E-value=0.0018 Score=44.83 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=66.2
Q ss_pred CCCCCCHHHHHHHCCCCC-C---------CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 323781248888659857-8---------708999549875188999999999850398199998646304788887520
Q gi|254780334|r 71 RIQTHIDELDRVTGGGFV-R---------GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRL 140 (479)
Q Consensus 71 Ri~TGi~eLDrvLGGGl~-~---------Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl 140 (479)
-||+-|++|+.+ |++ + --++||+|+.|+||||=+-.+...+-+.. ..-.+|-|+..+-+.. -.|.
T Consensus 101 ~ip~~Ip~fe~L---GLP~~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~-~~HIiTIEDPIEyvh~-~~~s 175 (350)
T TIGR01420 101 LIPSKIPTFEEL---GLPRPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNK-AGHIITIEDPIEYVHK-NKRS 175 (350)
T ss_pred HCCCCCCCHHHC---CCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECCEEEEEC-CCEE
T ss_conf 115346216663---7987899999836699389876889867899999997874038-8882563177314104-7702
Q ss_pred CCCCCCHHEECCCCHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 157751000034788999999973169828997216
Q gi|254780334|r 141 NTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSI 176 (479)
Q Consensus 141 ~~~~~~i~~~~e~~l~~il~~~i~~~~~~~vVIDSI 176 (479)
=+..-.+ =....+..+-+...+++ .||++.|-=+
T Consensus 176 li~QREv-G~DT~sF~~ALraALRe-DPDvILiGE~ 209 (350)
T TIGR01420 176 LINQREV-GLDTLSFANALRAALRE-DPDVILIGEM 209 (350)
T ss_pred EEECCCC-CCCHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf 4543624-67545799997684102-8988998255
No 442
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.015 Score=38.14 Aligned_cols=123 Identities=16% Similarity=0.260 Sum_probs=68.0
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCC--CHHHHHHH-HHHCCCCCCCHHEECCC
Q ss_conf 888865985787089995498751889999999998503--98199998646--30478888-75201577510000347
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK--KHRITYVSGEE--AIGQIRLR-AQRLNTINSSVYIAIET 153 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~--g~~vlYvS~EE--s~~Qi~~R-a~Rl~~~~~~i~~~~e~ 153 (479)
|.-.+-|+.+.- +++.|+||+|||+....++..+-.. +.-+.||-..+ ++.|+..+ +..++.. ...-.+..
T Consensus 33 l~~~~~~~~p~n--~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~--p~~g~~~~ 108 (366)
T COG1474 33 LAPALRGERPSN--IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV--PLTGDSSL 108 (366)
T ss_pred HHHHHCCCCCCC--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCC--CCCCCCHH
T ss_conf 999855899860--79988999873289999999997331567579995130787879999999982689--97676326
Q ss_pred C-HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8-89999999731698289972168766542044556367999999999997530797899986
Q gi|254780334|r 154 N-VEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG 216 (479)
Q Consensus 154 ~-l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig 216 (479)
. ++.+.+.+....+.-++|+|-+..+....- +..-.|.++......-+.+|+
T Consensus 109 ~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~~~~v~vi~ 161 (366)
T COG1474 109 EILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGENKVKVSIIA 161 (366)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC-----------CHHHHEECCCCCCCEEEEEEE
T ss_conf 89999999777418759999764765415464-----------145511124776753799999
No 443
>KOG0731 consensus
Probab=96.96 E-value=0.0054 Score=41.41 Aligned_cols=89 Identities=22% Similarity=0.360 Sum_probs=56.8
Q ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCC
Q ss_conf 78124888865985787089995498751889999999998503981999986463047888875201577510000347
Q gi|254780334|r 74 THIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIET 153 (479)
Q Consensus 74 TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~ 153 (479)
..=..+.+ ||-=+++| +||.|+||+|||-||..+|.. .|-+.+.+||-|=.+-.. -....
T Consensus 331 KNP~~Y~~-lGAKiPkG--vLL~GPPGTGKTLLAKAiAGE---AgVPF~svSGSEFvE~~~--------------g~~as 390 (774)
T KOG0731 331 KNPEQYQE-LGAKIPKG--VLLVGPPGTGKTLLAKAIAGE---AGVPFFSVSGSEFVEMFV--------------GVGAS 390 (774)
T ss_pred CCHHHHHH-CCCCCCCC--EEEECCCCCCHHHHHHHHHCC---CCCCEEEECHHHHHHHHC--------------CCCHH
T ss_conf 39899987-47767675--178789998678999988530---589646413378888760--------------34348
Q ss_pred CHHHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf 889999999731698289972168766542
Q gi|254780334|r 154 NVEDIIATLITNEKPDLVIIDSIQTLWSQT 183 (479)
Q Consensus 154 ~l~~il~~~i~~~~~~~vVIDSIQtl~~~~ 183 (479)
.+.++... .....|.++.||.|-++-...
T Consensus 391 rvr~lf~~-ar~~aP~iifideida~~~~r 419 (774)
T KOG0731 391 RVRDLFPL-ARKNAPSIIFIDEIDAVGRKR 419 (774)
T ss_pred HHHHHHHH-HHCCCCEEEEECCCCCCCCCC
T ss_conf 88999987-432698079714542003125
No 444
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=96.95 E-value=0.0023 Score=44.14 Aligned_cols=36 Identities=28% Similarity=0.567 Sum_probs=31.0
Q ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 865985787089995498751889999999998503
Q gi|254780334|r 82 VTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK 117 (479)
Q Consensus 82 vLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~ 117 (479)
+.--|-..|..+|++|+||+|||.|++.++..+...
T Consensus 42 mIk~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~ 77 (395)
T pfam06068 42 MIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGED 77 (395)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 997277577389987799988899999999974879
No 445
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.95 E-value=0.0036 Score=42.69 Aligned_cols=90 Identities=16% Similarity=0.284 Sum_probs=58.1
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHH
Q ss_conf 24888865985787089995498751889999999998503981999986463047888875201577510000347889
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVE 156 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~ 156 (479)
..|.+++. .++-++|++|++|.||||.+..+...+...+.+ .++.|+..+........+.++. -...+..
T Consensus 70 ~~l~~~~~---~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~--i~tiEdPvE~~~~~~~Q~~v~~-----~~g~~~~ 139 (264)
T cd01129 70 EIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKN--IITVEDPVEYQIPGINQVQVNE-----KAGLTFA 139 (264)
T ss_pred HHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCE--EEEEECCCCCCCCCCCEEEECC-----CCCCCHH
T ss_conf 99999970---899889997899997799999999864368850--8998676314568873576166-----6687899
Q ss_pred HHHHHHHHCCCCCEEEECHHH
Q ss_conf 999999731698289972168
Q gi|254780334|r 157 DIIATLITNEKPDLVIIDSIQ 177 (479)
Q Consensus 157 ~il~~~i~~~~~~~vVIDSIQ 177 (479)
+.+..+ -..+||+++|+-|.
T Consensus 140 ~~lr~~-LR~dPDvi~igEiR 159 (264)
T cd01129 140 RGLRAI-LRQDPDIIMVGEIR 159 (264)
T ss_pred HHHHHH-HCCCCCEEEECCCC
T ss_conf 999998-55699988746889
No 446
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.93 E-value=0.023 Score=36.83 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=69.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHH-----------HHHCCCCCCCHHEE
Q ss_conf 85787089995498751889999999998503981999986463----0478888-----------75201577510000
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA----IGQIRLR-----------AQRLNTINSSVYIA 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs----~~Qi~~R-----------a~Rl~~~~~~i~~~ 150 (479)
-+.+|.++.+-|+-|+|||||+..++...-...+++.|- +++- +.++..+ +.+|-+ .+|+.+-
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~-G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV-eENL~~g 102 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD-GEDITGLPPHERARLGIAYVPEGRRIFPRLTV-EENLLLG 102 (237)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC-CEECCCCCHHHHHHCCEEECCCCCCCHHHCCH-HHHHHHH
T ss_conf 876898899989998888999999858987887069989-83567799789985776867521361000759-9987423
Q ss_pred ---------CCCCHHHH---------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf ---------34788999---------------------------999973169828997216876654204455636799
Q gi|254780334|r 151 ---------IETNVEDI---------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 151 ---------~e~~l~~i---------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
...+++.+ +...+ -.+|+++++|-. ... -++.-+
T Consensus 103 ~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL-m~~PklLLLDEP------s~G---LaP~iv 172 (237)
T COG0410 103 AYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL-MSRPKLLLLDEP------SEG---LAPKIV 172 (237)
T ss_pred HHCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCC------CCC---CCHHHH
T ss_conf 1024531000113899999786389884084467781999999999999-619988996588------667---688999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 99999999975307978999863
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~viligh 217 (479)
.++...+..+.++.+++++++-|
T Consensus 173 ~~I~~~i~~l~~~~g~tIlLVEQ 195 (237)
T COG0410 173 EEIFEAIKELRKEGGMTILLVEQ 195 (237)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999999748948999942
No 447
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.93 E-value=0.0081 Score=40.09 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 857870899954987518899999999985039819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E 127 (479)
-+.+|.++.|-|+.|+|||||+--+|.-. +...--+|+.++
T Consensus 26 ~v~~Ge~~~llGpSG~GKtTlLr~iaGl~-~p~~G~I~~~g~ 66 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTIYQGGR 66 (353)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCE
T ss_conf 99899999999999535999999997699-998739999999
No 448
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.027 Score=36.27 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=27.3
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
..+|+++|.|=..+. + +..+.++.. .+++..|+.++++++|-|
T Consensus 161 ~~~p~llilDEPTa~----L-----d~~~~~~l~-~~l~~l~~~g~tii~isH 203 (510)
T PRK09700 161 MLDAKVIIMDEPTSS----L-----TNKEVDYLF-LIMNQLRKEGTAIVYISH 203 (510)
T ss_pred HHCCCEEEECCCCCC----C-----CHHHHHHHH-HHHHHHHHCCCCEEEEEC
T ss_conf 859884998788566----6-----867899999-998888872871799952
No 449
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=96.91 E-value=0.013 Score=38.55 Aligned_cols=143 Identities=19% Similarity=0.299 Sum_probs=91.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH--HHHHH------------------CCC-CCCCHHE
Q ss_conf 08999549875188999999999850398199998646304788--88752------------------015-7751000
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIR--LRAQR------------------LNT-INSSVYI 149 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~--~Ra~R------------------l~~-~~~~i~~ 149 (479)
.++.-+|-=|+||||..-.++-++++-|++|+-+.+.=+..=+. ++.|- +-. +..|.++
T Consensus 2 ~I~iASGKGGtGKTT~tANLgVALA~~Gk~V~~~DADI~MANL~LiLgmE~~~VTLhDVLAGeA~i~DAIY~gp~GnV~V 81 (258)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLVLDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPEGNVKV 81 (258)
T ss_pred EEEEEECCCCCCHHHEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEE
T ss_conf 88999778898614000007788986097689994676677689884468889675221344561001100288984478
Q ss_pred EC------------CCCHHHHHHHHHHCCCCCEEEECHH--------HHHH---------HHHHCCCCCCHHHHHHHHHH
Q ss_conf 03------------4788999999973169828997216--------8766---------54204455636799999999
Q gi|254780334|r 150 AI------------ETNVEDIIATLITNEKPDLVIIDSI--------QTLW---------SQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 150 ~~------------e~~l~~il~~~i~~~~~~~vVIDSI--------Qtl~---------~~~~~s~~GsvsQvre~~~~ 200 (479)
.+ ...|++++.++.+ ..|+++||-- .++. +|++.|- .. +-+
T Consensus 82 ~PagvSLEg~rKA~~~~L~dV~~~i~~--~~D~lLIDAPAGL~~~a~~Al~~a~elLLVvNPEi~SI-------tD-aLK 151 (258)
T TIGR01969 82 IPAGVSLEGLRKADPDKLEDVLKEIID--DTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSI-------TD-ALK 151 (258)
T ss_pred ECCCCCHHHCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHH-------HH-HHH
T ss_conf 506122100012683332899998720--43778874789833789999986186648667654467-------77-889
Q ss_pred HHHHHHH--CCCEEEEEEEECCCCCCCCHHHHHHHHHE-EEEEECC
Q ss_conf 9997530--79789998630366543311457877530-2785155
Q gi|254780334|r 201 MIQYAKK--NGVAMVLVGHVTKEGQIAGPRVIEHMVDA-VLYFEGG 243 (479)
Q Consensus 201 L~~~AK~--~~i~vilighvTK~G~iAGp~~LeH~VD~-vl~~ege 243 (479)
+.-.|++ +.+.-+++.=+|++..--++...|.+.++ ||-.=-|
T Consensus 152 ~k~va~~lGt~ilG~vlNRv~~~~tel~~~eiE~iLevPVl~~vPE 197 (258)
T TIGR01969 152 VKIVAEKLGTAILGVVLNRVTRDKTELGREEIEAILEVPVLGVVPE 197 (258)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECC
T ss_conf 9999876088324689960236666378889998847973898569
No 450
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=96.91 E-value=0.0032 Score=43.04 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 875188999999999850398199998646
Q gi|254780334|r 99 PGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 99 PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
=|+||||.++++|.++++.|++|+.+...-
T Consensus 10 GGvGKTTtavnLA~aLA~~G~rVllIDlDp 39 (261)
T pfam09140 10 GGSGKSTTAVHVAVALLYLGARVATIDLDL 39 (261)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 987299999999999998899789997999
No 451
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=96.91 E-value=0.013 Score=38.65 Aligned_cols=119 Identities=18% Similarity=0.399 Sum_probs=68.6
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHH-HHHHHCCCCCCCHHEECC--------
Q ss_conf 8578708999549875188999999999850398199998646----304788-887520157751000034--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIR-LRAQRLNTINSSVYIAIE-------- 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~-~Ra~Rl~~~~~~i~~~~e-------- 152 (479)
-+..|.+..+-|..|+||||+. .+...+-..-.--+||.||+ |..|++ .|-..++.....+-+++-
T Consensus 15 ~i~~GEi~vi~GlSGsGKsT~v-rmlNRLIEPt~G~i~IDG~~I~~~~~~eLREVRRkKI~~V~Q~~aLfPHmTil~N~~ 93 (372)
T TIGR01186 15 EIAKGEIFVIMGLSGSGKSTLV-RMLNRLIEPTAGQIFIDGENIMKISDVELREVRRKKIGMVFQQFALFPHMTILQNTS 93 (372)
T ss_pred EEECCEEEEEECCCCCCHHHHH-HHHHHCCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 5525438999778998578999-998722577787467662143136934754442456656544430276415777877
Q ss_pred -----------------------------------CCHH-------HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCC
Q ss_conf -----------------------------------7889-------9999997316982899721687665420445563
Q gi|254780334|r 153 -----------------------------------TNVE-------DIIATLITNEKPDLVIIDSIQTLWSQTAESSPGT 190 (479)
Q Consensus 153 -----------------------------------~~l~-------~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~Gs 190 (479)
..|. -++.. +. ..|+++..|=- |++ +| |=
T Consensus 94 ~g~~L~g~~~~~R~ekAle~LklVglGe~y~~~YPdeLSGG~qQRvGl~RA-La-~~PdilLMDEa---FsA-LD--Pl- 164 (372)
T TIGR01186 94 LGLELLGIPEQERKEKALELLKLVGLGEEYEHRYPDELSGGMQQRVGLARA-LA-AEPDILLMDEA---FSA-LD--PL- 164 (372)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HH-CCCCEEECCCC---CCC-CC--CC-
T ss_conf 747751886778899999876415798760115862014873058999998-74-38780540476---433-57--10-
Q ss_pred HHHHHHHH-HHHHHHHHHCCCEEEEEEE
Q ss_conf 67999999-9999975307978999863
Q gi|254780334|r 191 VIQVRTSV-QAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 191 vsQvre~~-~~L~~~AK~~~i~viligh 217 (479)
+|.-. .+|.++-++.+-|+++|-|
T Consensus 165 ---iR~~lQdEl~kLq~~~~kTIvFitH 189 (372)
T TIGR01186 165 ---IRDSLQDELKKLQATLQKTIVFITH 189 (372)
T ss_pred ---CHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf ---0167889999999860980899941
No 452
>KOG0728 consensus
Probab=96.90 E-value=0.014 Score=38.34 Aligned_cols=125 Identities=20% Similarity=0.350 Sum_probs=77.1
Q ss_pred CCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEE
Q ss_conf 32378124888865985787089995498751889999999998503981999986463047888875201577510000
Q gi|254780334|r 71 RIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIA 150 (479)
Q Consensus 71 Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~ 150 (479)
-++.--+||=..| |+..--=+|+.|+||.|||-|+-.++..-. -+.+-+||-|-.+..-.-..|+
T Consensus 164 eLPvKHPELF~aL--GIaQPKGvlLygppgtGktLlaraVahht~---c~firvsgselvqk~igegsrm---------- 228 (404)
T KOG0728 164 ELPVKHPELFEAL--GIAQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGSELVQKYIGEGSRM---------- 228 (404)
T ss_pred HCCCCCHHHHHHC--CCCCCCCEEEECCCCCCHHHHHHHHHHHCC---EEEEEECHHHHHHHHHHHHHHH----------
T ss_conf 2656687899851--878876048846999756299999875414---0799964499999985013899----------
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHHHHHCCCEEEEE
Q ss_conf 34788999999973169828997216876654204455636799999----999999753079789998
Q gi|254780334|r 151 IETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTS----VQAMIQYAKKNGVAMVLV 215 (479)
Q Consensus 151 ~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~----~~~L~~~AK~~~i~vili 215 (479)
+..+.-. ..++.|..++.|-|-.+-+...++..|+-|+|... .+.|..|-..+||-++.-
T Consensus 229 ----vrelfvm-arehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvima 292 (404)
T KOG0728 229 ----VRELFVM-AREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMA 292 (404)
T ss_pred ----HHHHHHH-HHHCCCCEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf ----9999999-875088267500001212343457898638999999999974024000366269984
No 453
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.89 E-value=0.0046 Score=41.89 Aligned_cols=58 Identities=28% Similarity=0.347 Sum_probs=36.4
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCC---CEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 56656403133345566632378124888865985787---0899954987518899999999985
Q gi|254780334|r 53 GHSISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRG---SVILVGGDPGIGKSTLLMQTAASLA 115 (479)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~G---s~~Li~G~PGvGKSTL~Lqia~~~a 115 (479)
....+|..+.|+-.++.-. ..|-..+.-+..++ +.+|+.|+||+|||||+.=+|..+.
T Consensus 15 ~~~lRP~~l~e~vGQehl~-----~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~ 75 (234)
T pfam05496 15 ERSLRPRRLDEYIGQEKVK-----ENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 75 (234)
T ss_pred HHCCCCCCHHHCCCHHHHH-----HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8554989766606949999-----999999998874277766278878999988899999998408
No 454
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.0054 Score=41.40 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=58.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHCCCCCC--CHHEE-----CCCC----
Q ss_conf 578708999549875188999999999850398199998646-30478888752015775--10000-----3478----
Q gi|254780334|r 87 FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-AIGQIRLRAQRLNTINS--SVYIA-----IETN---- 154 (479)
Q Consensus 87 l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-s~~Qi~~Ra~Rl~~~~~--~i~~~-----~e~~---- 154 (479)
+++|..--+..|+|+||||+.+-++.-+|++|.+++|+---. =..|...|-+.+.-... +..+. ....
T Consensus 94 ~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~ 173 (1187)
T COG1110 94 LVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEA 173 (1187)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
T ss_conf 87378448982788765479999999987558749999667899999999999988653785246653123665779999
Q ss_pred HH------------------HHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 89------------------9999997316982899721687665
Q gi|254780334|r 155 VE------------------DIIATLITNEKPDLVIIDSIQTLWS 181 (479)
Q Consensus 155 l~------------------~il~~~i~~~~~~~vVIDSIQtl~~ 181 (479)
++ .-.+. +...+.|++++|-+-++..
T Consensus 174 le~i~~gdfdIlitTs~FL~k~~e~-L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 174 LERIESGDFDILITTSQFLSKRFEE-LSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHCCCCCEEEEEHHHHHHHHHH-HCCCCCCEEEECCHHHHHH
T ss_conf 9998659963999747878866998-4045777899804788986
No 455
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.033 Score=35.66 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=27.1
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 16982899721687665420445563679999999999975307978999863
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
..+|+++|.|=..+.. + ....++... +.+-.|+.++++++|-|
T Consensus 150 ~~~p~ililDEPt~~L----D-----~~~~~~l~~-~l~~l~~~g~til~itH 192 (491)
T PRK10982 150 SYNAKIVIMDEPTSSL----T-----EKEVNHLFT-IIRKLKERGCGIVYISH 192 (491)
T ss_pred HCCCCEEEECCCCCCC----C-----HHHHHHHHH-HHHHHHHCCCEEEEECC
T ss_conf 5399889815873455----8-----788899988-88887742853678624
No 456
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.89 E-value=0.029 Score=36.03 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=26.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 8578708999549875188999999999850
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAY 116 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~ 116 (479)
-+.+|..+.|.|+-|+|||||+--++..+..
T Consensus 25 ~i~~Ge~~~LvG~NGaGKSTL~k~l~G~l~~ 55 (490)
T PRK10938 25 TLNAGDSWAFVGSNGSGKSALARALAGELPL 55 (490)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989989999979997799999999569987
No 457
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.88 E-value=0.0045 Score=41.97 Aligned_cols=65 Identities=26% Similarity=0.335 Sum_probs=36.2
Q ss_pred CCCCEECCCCCCCCCC--CCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 6564031333455666--32378124888865985787089995498751889999999998503981999986
Q gi|254780334|r 55 SISLFMLSEESIEEES--RIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 55 ~~~~~~l~~~~~~~~~--Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
.-+|..+++.-.++.- ++..- ++..-.-|-.... +|+.|+||.|||||+.=+|..+.. +.-+.||
T Consensus 18 ~lRP~~l~efiGQ~~i~~~L~v~---i~Aak~r~e~ldH-~Ll~GPPGlGKTTLA~iiA~E~~~---~~~~tsG 84 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIF---IEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGV---NIRITSG 84 (328)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHH---HHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCC---CCEECCC
T ss_conf 55988576635959999999999---9999964999880-576588998899999999998688---8156245
No 458
>PRK09401 reverse gyrase; Reviewed
Probab=96.88 E-value=0.01 Score=39.40 Aligned_cols=219 Identities=18% Similarity=0.228 Sum_probs=108.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHH----HHHCCCCCCCHHEECCC--------
Q ss_conf 5787089995498751889999999998503981999986463-0478888----75201577510000347--------
Q gi|254780334|r 87 FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA-IGQIRLR----AQRLNTINSSVYIAIET-------- 153 (479)
Q Consensus 87 l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs-~~Qi~~R----a~Rl~~~~~~i~~~~e~-------- 153 (479)
+..|...-+..|+|+||||+.+-++.-++++|.+++|+-=-.+ ..|+..| +++.+....-++..+..
T Consensus 90 ~~~g~SFaiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~~~~~y~~~~~~~~kee~ 169 (1176)
T PRK09401 90 LLLGESFAIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKVRLLYYHSSLKKKEKEEF 169 (1176)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 86689748988899888899999999998659839999688899999999999999970998408998567766678999
Q ss_pred ---------------C--HHHHHHHHHHCCCCCEEEECHHHHHHHHH--HCC---CCCCHHHHHHHHHHH----------
Q ss_conf ---------------8--89999999731698289972168766542--044---556367999999999----------
Q gi|254780334|r 154 ---------------N--VEDIIATLITNEKPDLVIIDSIQTLWSQT--AES---SPGTVIQVRTSVQAM---------- 201 (479)
Q Consensus 154 ---------------~--l~~il~~~i~~~~~~~vVIDSIQtl~~~~--~~s---~~GsvsQvre~~~~L---------- 201 (479)
+ +..-.+ .+...+++++++|-+-++.-+. ++. .-|--.++-+-+..+
T Consensus 170 ~~~~~~gdfdIlitT~~fl~kn~~-~l~~~~f~fifvDDVDs~LKssKnid~~l~llGf~~e~i~~a~~~i~~~~~~~~~ 248 (1176)
T PRK09401 170 LERLEEGDFDILVTTSQFLSKNFD-ELPKDRFDFVFVDDVDAVLKSSKNIDKLLKLLGFSEEDIEKAMELIKLKRKTEEL 248 (1176)
T ss_pred HHHHHCCCCCEEEEEHHHHHHHHH-HCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 988655998689985676765487-6035688889993418777523409999998399999999999999975234344
Q ss_pred ----------HHHHHHCCCEEEEEEEECCCCCCCCHHHH-----------------HHHHHEEEEEECCCCCCCCCCEEE
Q ss_conf ----------99753079789998630366543311457-----------------877530278515556665442156
Q gi|254780334|r 202 ----------IQYAKKNGVAMVLVGHVTKEGQIAGPRVI-----------------EHMVDAVLYFEGGTRNTQYDYRIL 254 (479)
Q Consensus 202 ----------~~~AK~~~i~vilighvTK~G~iAGp~~L-----------------eH~VD~vl~~ege~~~~~~~~R~L 254 (479)
....++....++++.--|-- --|+++. -.++|+ |.+.+ + ..-+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~g~livsSAT~~--prg~r~~lfreLlgFevg~~~~~lRni~D~--y~~~~--~--~~~~~~ 320 (1176)
T PRK09401 249 KEEIEELEEKIREIRKKKKGVLVVSSATGR--PRGIRIKLFRELLGFEVGRPRFYLRNIVDV--YIEPE--D--LVEKLV 320 (1176)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHCCCCCCCCCCEEEEEEE--ECCCC--C--HHHHHH
T ss_conf 456778899999874368749999757778--888538999998298678864230212577--60576--6--889999
Q ss_pred EEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCC-----EEEEEEEECCCCC
Q ss_conf 76320256765127998515663110140455511476676734899730489741-----1553310115778
Q gi|254780334|r 255 RSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRAL-----LVEIQSLVVPTSL 323 (479)
Q Consensus 255 r~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~-----lvEvQALv~~~~~ 323 (479)
+.+ +|+|+- .-||.-.+.|...+..-.++... .|-.+....++.+-. --|++.||.-++|
T Consensus 321 e~v-~~lG~G--gLifv~~~~g~e~~~~~~~~l~~------~g~~a~~~~~~~~~~le~f~~Ge~dvLvG~asy 385 (1176)
T PRK09401 321 ELV-KRLGDG--GLVFVPTDYGKEYAEELKEYLES------HGIKAEAYSGRKKEFLEKFEEGEIDVLIGVASY 385 (1176)
T ss_pred HHH-HHHCCC--EEEEEECCCCHHHHHHHHHHHHH------CCCEEEEEECCCHHHHHHHHCCCCCEEEEECCC
T ss_conf 999-984895--49997676588999999999997------696699960588668889757886489997012
No 459
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.88 E-value=0.0018 Score=44.88 Aligned_cols=41 Identities=32% Similarity=0.489 Sum_probs=38.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 78708999549875188999999999850398199998646
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
.+|.++-++|-||+|||||+-.+...+...|.++.++.|++
T Consensus 5 ~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~ 45 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 88679997899999899999999999997599779988689
No 460
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.87 E-value=0.037 Score=35.25 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=79.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC--------CCCHHHHHHH--HHHCCCCCCCHHEECCCC-
Q ss_conf 85787089995498751889999999998503981999986--------4630478888--752015775100003478-
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG--------EEAIGQIRLR--AQRLNTINSSVYIAIETN- 154 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~--------EEs~~Qi~~R--a~Rl~~~~~~i~~~~e~~- 154 (479)
+.++|-+.+.+|+ |=||||-++-+|...+-+|.+|+++-+ |+...+.... ..|.+.. ..+...+.+
T Consensus 18 ~~~kGlI~VYTGd-GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~~~~~~~~~g~~--~~~~~~~~~e 94 (178)
T PRK07414 18 YTVEGLVQVFTSS-QRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDQPIQLGQNLDWVRCDLP--RCLDTPHLDE 94 (178)
T ss_pred CCCCCEEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHCCCCEEEECCCC--CCCCCCCCCH
T ss_conf 5654179999579-998089999999999539987999997558973016899972689689974777--5466888889
Q ss_pred --HH------HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCC
Q ss_conf --89------9999997316982899721687665420445563679999999999975307978999863036654331
Q gi|254780334|r 155 --VE------DIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAG 226 (479)
Q Consensus 155 --l~------~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAG 226 (479)
.. +.....+.+.++|++|.|=|-....-.+- ...++...|. .|..+.-++++|.- -
T Consensus 95 ~~~~a~~~~~~~a~~~l~~g~~DlvVLDEi~~Al~~gll-------~~eeVi~~L~--~rP~~~evVLTGR~-------a 158 (178)
T PRK07414 95 SENKALQELWQYTQQVVDEGKYELVVLDELSLAIQFGLI-------PETEVLEFLE--KRPSHVDVILTGPE-------M 158 (178)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHCCCC-------CHHHHHHHHH--HCCCCCEEEEECCC-------C
T ss_conf 999999999999999986889888997036899876992-------5999999998--18999889996999-------9
Q ss_pred HHHHHHHHHEEE
Q ss_conf 145787753027
Q gi|254780334|r 227 PRVIEHMVDAVL 238 (479)
Q Consensus 227 p~~LeH~VD~vl 238 (479)
|..|--+.|.|.
T Consensus 159 p~eLie~ADlVT 170 (178)
T PRK07414 159 PESLLAIADQIT 170 (178)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999854888
No 461
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.86 E-value=0.0023 Score=44.13 Aligned_cols=91 Identities=20% Similarity=0.340 Sum_probs=56.5
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEE---CCC
Q ss_conf 24888865985787089995498751889999999998503981999986463047888875201577510000---347
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIA---IET 153 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~---~e~ 153 (479)
+++.+.|--=...+..+|++|++|+||||++-.++..+.+...+ .++-|+..+..-. +. ..+.+. ...
T Consensus 126 ~~~~~~L~~~v~~~~~ilIsG~TGSGKTT~l~all~~i~~~~~r--iitiED~~El~l~-----~~--~~v~l~~~~~~~ 196 (283)
T pfam00437 126 ADIAEFLRQAVQARGNILVSGGTGSGKTTLLYALLNEINTDDER--IVTIEDPVEIQLE-----GP--NQVQLNTRLAGV 196 (283)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC--EEEECCCCEECCC-----CC--CEEEEEECCCCC
T ss_conf 99999999999819759998899998899999999840877762--7873378523179-----88--789998558876
Q ss_pred CHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 889999999731698289972168
Q gi|254780334|r 154 NVEDIIATLITNEKPDLVIIDSIQ 177 (479)
Q Consensus 154 ~l~~il~~~i~~~~~~~vVIDSIQ 177 (479)
++++++.... ..+||.++|.-+.
T Consensus 197 t~~~ll~~~L-R~~PD~IivGEiR 219 (283)
T pfam00437 197 TFADLLRAAL-RQRPDRIMVGEIR 219 (283)
T ss_pred CHHHHHHHHH-CCCCCEEEECCCC
T ss_conf 9999999963-8899989757869
No 462
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=96.86 E-value=0.011 Score=39.04 Aligned_cols=160 Identities=23% Similarity=0.277 Sum_probs=93.1
Q ss_pred HHHHHHHCCC---CC-------CCCEEEEECCCCCCHHHHHHHHHHH--HHCCCCCEEEEECCC----CHHHHHHHHHHC
Q ss_conf 2488886598---57-------8708999549875188999999999--850398199998646----304788887520
Q gi|254780334|r 77 DELDRVTGGG---FV-------RGSVILVGGDPGIGKSTLLMQTAAS--LAYKKHRITYVSGEE----AIGQIRLRAQRL 140 (479)
Q Consensus 77 ~eLDrvLGGG---l~-------~Gs~~Li~G~PGvGKSTL~Lqia~~--~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl 140 (479)
+||=.+|||= =. +-+++|+.|==|+||||.+--+|.. .-+.++++|-++..= ..+|++.=+++.
T Consensus 79 eEL~~~LG~~~~E~~~L~~~~~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~ 158 (439)
T TIGR00959 79 EELVAILGGKGRESAELKLAEKRPTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQV 158 (439)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHC
T ss_conf 89998516667325675556786838997313788578899999999999863897034032103478999999976752
Q ss_pred CCCCCCHH-EECCCC---HHHHHHHH---HHCCCCCEEEECHHHHHHHHHHCCCCCCHHH---HHHHH------------
Q ss_conf 15775100-003478---89999999---7316982899721687665420445563679---99999------------
Q gi|254780334|r 141 NTINSSVY-IAIETN---VEDIIATL---ITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ---VRTSV------------ 198 (479)
Q Consensus 141 ~~~~~~i~-~~~e~~---l~~il~~~---i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ---vre~~------------ 198 (479)
|++. +. ...+.+ --++..+. .+..+.|+||||+-=-+.-.+. -+.| +++.+
T Consensus 159 gVpv--f~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~-----LM~EL~~iK~~~nP~EiLlVvDaM 231 (439)
T TIGR00959 159 GVPV--FAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEE-----LMEELAEIKEILNPDEILLVVDAM 231 (439)
T ss_pred CCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH-----HHHHHHHHHHHHCCCEEEECCHHC
T ss_conf 8871--100478889887789999999999974897899726751255599-----999999998886887054122010
Q ss_pred --HHHHHHHHHCCCEEEEEEEE-CC-CCCCCCHHHH--HHHHHEEEEEECC
Q ss_conf --99999753079789998630-36-6543311457--8775302785155
Q gi|254780334|r 199 --QAMIQYAKKNGVAMVLVGHV-TK-EGQIAGPRVI--EHMVDAVLYFEGG 243 (479)
Q Consensus 199 --~~L~~~AK~~~i~vilighv-TK-~G~iAGp~~L--eH~VD~vl~~ege 243 (479)
+.-...||..|--+=|.|-| || ||.-=|==+| .++.-.=+.|.|.
T Consensus 232 ~GQdAvn~A~~F~e~lgltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~ 282 (439)
T TIGR00959 232 TGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGV 282 (439)
T ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 216999999863660013547885475660578999999996896188841
No 463
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.85 E-value=0.02 Score=37.25 Aligned_cols=62 Identities=8% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECC
Q ss_conf 169828997216876654204455636799999999-9997530797899986303665433114578775302785155
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA-MIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGG 243 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~-L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege 243 (479)
-.+|++++.|=-. +.+|. ...++.... +..+.++.+.++++|-|- +..+ ...|-|+.+|.+
T Consensus 137 ~~~p~lllLDEPT----s~LD~-----~~~~~~l~~ll~~~~~~~~~tiIivtHd--------~e~~-~~aD~vv~i~kd 198 (204)
T cd03240 137 GSNCGILALDEPT----TNLDE-----ENIEESLAEIIEERKSQKNFQLIVITHD--------EELV-DAADHIYRVEKD 198 (204)
T ss_pred HCCCCEEEEECCC----CCCCH-----HHHHHHHHHHHHHHHHCCCCEEEEEECC--------HHHH-HHCCEEEEEECC
T ss_conf 4599989981876----66997-----8999999999999985699899999449--------8999-849959999589
Q ss_pred C
Q ss_conf 5
Q gi|254780334|r 244 T 244 (479)
Q Consensus 244 ~ 244 (479)
.
T Consensus 199 G 199 (204)
T cd03240 199 G 199 (204)
T ss_pred C
T ss_conf 8
No 464
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=96.85 E-value=0.023 Score=36.86 Aligned_cols=134 Identities=21% Similarity=0.325 Sum_probs=84.6
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 66632378124888865985787089995498751889999999998503981999986463047888875201577510
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV 147 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i 147 (479)
+.--+|---+||=.-| |+.|-.-+|+.|+||+|||-|+-.+|.... -....+.|-|-.+ ..
T Consensus 220 e~~elP~~hPe~f~~l--GiePPkG~ll~GPPGtGktllaka~ane~~---a~f~~inGPeims--------------ky 280 (980)
T TIGR01243 220 EMVELPLKHPELFEKL--GIEPPKGVLLYGPPGTGKTLLAKAVANEAG---AYFIAINGPEIMS--------------KY 280 (980)
T ss_pred HHHHCCCCCHHHHHHC--CCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CEEEEECCCHHHH--------------HH
T ss_conf 9884357564789861--889987358755898617899999875305---5178850603443--------------31
Q ss_pred HEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf 000347889999999731698289972168766542044556367999999--99999753079789998630366543
Q gi|254780334|r 148 YIAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSV--QAMIQYAKKNGVAMVLVGHVTKEGQI 224 (479)
Q Consensus 148 ~~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~--~~L~~~AK~~~i~vilighvTK~G~i 224 (479)
+--+|..+..+... .++..|.+++||-|.++. +.-+...|.+. -|-++ ..|++=.|.++-. ++||-.+++..+
T Consensus 281 ~Ge~e~~lr~if~e-aeenaP~iifideidaia-Pkr~e~~Geve-~r~v~qlltlmdGlk~rG~v-~viGatnrP~a~ 355 (980)
T TIGR01243 281 YGESEERLREIFKE-AEENAPSIIFIDEIDAIA-PKREEVTGEVE-KRVVAQLLTLMDGLKGRGKV-IVIGATNRPDAL 355 (980)
T ss_pred CCCCHHHHHHHHHH-HHHCCCCEEEEECHHHCC-CCCCCHHHHHH-HHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCC
T ss_conf 36307899999986-530587078741211007-64100001688-99999999997400248728-998146885002
No 465
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.032 Score=35.80 Aligned_cols=142 Identities=21% Similarity=0.318 Sum_probs=76.1
Q ss_pred CCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC-----------
Q ss_conf 812488886598578708999549875188999999999850398199998646304788887520157-----------
Q gi|254780334|r 75 HIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI----------- 143 (479)
Q Consensus 75 Gi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~----------- 143 (479)
|+.-||.| .=-+.+|.++-+.|+-|.|||||+--++.......+ -+++.|++-...=...|.+.|+.
T Consensus 20 gV~AL~~v-~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~ 97 (500)
T COG1129 20 GVKALDGV-SLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALAAGIATVHQELSLVPN 97 (500)
T ss_pred CCEEECCE-EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHCCEEEEEECHHCCCC
T ss_conf 95033140-237837728999668888899999997286158861-7999998806899999986890899542121677
Q ss_pred ---CCCHHEEC------------------------------------CCCHHH--H--HHHHHHCCCCCEEEECHHHHHH
Q ss_conf ---75100003------------------------------------478899--9--9999731698289972168766
Q gi|254780334|r 144 ---NSSVYIAI------------------------------------ETNVED--I--IATLITNEKPDLVIIDSIQTLW 180 (479)
Q Consensus 144 ---~~~i~~~~------------------------------------e~~l~~--i--l~~~i~~~~~~~vVIDSIQtl~ 180 (479)
.+|+|+-. ..++.+ + ++..+ ..+++++|.|=-.
T Consensus 98 LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl-~~~arllIlDEPT--- 173 (500)
T COG1129 98 LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL-SFDARVLILDEPT--- 173 (500)
T ss_pred CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHH-HCCCCEEEECCCC---
T ss_conf 709998450466545777528999999999999973898870000330899999999999986-2699899973987---
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE-------------ECCCCCCCCHHH
Q ss_conf 5420445563679999999999975307978999863-------------036654331145
Q gi|254780334|r 181 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH-------------VTKEGQIAGPRV 229 (479)
Q Consensus 181 ~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh-------------vTK~G~iAGp~~ 229 (479)
+.-+..++ +....+++-.|+.++++++|-| |-+||...|-..
T Consensus 174 ------aaLt~~E~-~~Lf~~ir~Lk~~Gv~iI~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 174 ------AALTVKET-ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred ------CCCCHHHH-HHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf ------67998999-99999999999689889998676899998668899996997961015
No 466
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.84 E-value=0.053 Score=34.14 Aligned_cols=168 Identities=16% Similarity=0.202 Sum_probs=88.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC--C--CCEEEEECCCCHHHH---HHHHHHCC
Q ss_conf 6632378124888865985787089995498751889999999998503--9--819999864630478---88875201
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK--K--HRITYVSGEEAIGQI---RLRAQRLN 141 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~--g--~~vlYvS~EEs~~Qi---~~Ra~Rl~ 141 (479)
.+-+.|||.-+|-++ =+.+|+-+.|.|.+|+|||+|+.+++.+..-. + ..++|+..=|.-..+ ......-+
T Consensus 124 ~e~l~TGI~~ID~l~--pl~rGQr~~If~gsGvgks~l~~~i~~qa~~~~~~~~~~vV~~~iGeR~~E~~e~~~~~~~~g 201 (460)
T PRK04196 124 EEFIQTGISAIDGLN--TLVRGQKLPIFSGSGLPHNELAAQIARQAKVLGSEEKFAVVFAAMGITFEEANFFMDEFEETG 201 (460)
T ss_pred CCEECCCCEEEECCC--CEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEECHHHHHHHHHHHHCC
T ss_conf 846137967961643--322475765533899881169999999877505788815999732076068999999887448
Q ss_pred CCCCCHHEECCCCHHH------------HHHHHH-HCCCCCEEEECHHHHHH---------HHHH---CCCCCCHHHHHH
Q ss_conf 5775100003478899------------999997-31698289972168766---------5420---445563679999
Q gi|254780334|r 142 TINSSVYIAIETNVED------------IIATLI-TNEKPDLVIIDSIQTLW---------SQTA---ESSPGTVIQVRT 196 (479)
Q Consensus 142 ~~~~~i~~~~e~~l~~------------il~~~i-~~~~~~~vVIDSIQtl~---------~~~~---~s~~GsvsQvre 196 (479)
.....+.+....+... +-+... +..+--++++|++.... ..+. .+.|+++. ..
T Consensus 202 ~m~rtvlv~~ts~~p~~~R~~~~~~a~tiAEyfr~d~G~~VL~~~dd~tr~A~A~REis~~lge~P~~~GYP~~l~--s~ 279 (460)
T PRK04196 202 ALERSVLFLNLADDPAIERILTPRMALTTAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMY--TD 279 (460)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH--HH
T ss_conf 6320047513588988998888766657899999856995799975807888876688875479998777686268--88
Q ss_pred HHHHHHHHH---HHCCCEEEEEEEEC-CCCCCCCHH--HHHHHHHEEEEEE
Q ss_conf 999999975---30797899986303-665433114--5787753027851
Q gi|254780334|r 197 SVQAMIQYA---KKNGVAMVLVGHVT-KEGQIAGPR--VIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~A---K~~~i~vilighvT-K~G~iAGp~--~LeH~VD~vl~~e 241 (479)
...|..-| +..+=.+-.++-|+ ..|.+..|- ..-.++|..++|+
T Consensus 280 -la~l~ERAG~~~~~~GSIT~i~~V~~pgdD~t~Pi~~~t~~i~dg~i~L~ 329 (460)
T PRK04196 280 -LATLYERAGRIKGKKGSITQIPILTMPEDDITHPIPDLTGYITEGQIVLS 329 (460)
T ss_pred -HHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCEEEEEC
T ss_conf -68888723555789832699999976798766646776764404389983
No 467
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=96.83 E-value=0.014 Score=38.26 Aligned_cols=143 Identities=20% Similarity=0.303 Sum_probs=81.4
Q ss_pred HHHHHCC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH---HHH--------------
Q ss_conf 8888659---85787089995498751889999999998503981999986463047888---875--------------
Q gi|254780334|r 79 LDRVTGG---GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL---RAQ-------------- 138 (479)
Q Consensus 79 LDrvLGG---Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~---Ra~-------------- 138 (479)
...||.+ -+-.|..+=+=|..|+|||||+-=+ -.+.+.-.--+++-|+. ..|+.. ||-
T Consensus 24 ~~~VL~~vsL~l~~Ge~~gLLG~SG~GKSTLArlL-lGLe~P~~G~v~F~G~d-l~~L~~~~~rafrR~vQlvFQD~~sa 101 (267)
T TIGR02769 24 RKAVLDNVSLSLEEGETVGLLGRSGCGKSTLARLL-LGLEKPAQGEVSFRGQD-LSKLDRKQRRAFRRDVQLVFQDSPSA 101 (267)
T ss_pred HHHHCCCCCEEECCCCEEEECCCCCCCHHHHHHHH-HHCCCCCCCEEEECCCC-HHHCCHHHCCEEEEEEEEEEECCCCC
T ss_conf 43103674323137750552367887377899998-75078887404762564-55508110211121367898747431
Q ss_pred -----------------------------------HCCCCCCCHHEEC----CCCHHHH-HHHHHHCCCCCEEEECHHHH
Q ss_conf -----------------------------------2015775100003----4788999-99997316982899721687
Q gi|254780334|r 139 -----------------------------------RLNTINSSVYIAI----ETNVEDI-IATLITNEKPDLVIIDSIQT 178 (479)
Q Consensus 139 -----------------------------------Rl~~~~~~i~~~~----e~~l~~i-l~~~i~~~~~~~vVIDSIQt 178 (479)
-+++..+...-++ --.+.-+ ++.++ ..+|+++|.|=-
T Consensus 102 vNPr~tv~~ii~EPLrhl~~L~~s~~~~r~~~LL~~v~L~~~~~~k~P~qlSGGQLQRiniARAL-A~~PkLivLDEa-- 178 (267)
T TIGR02769 102 VNPRKTVREIIGEPLRHLTSLDESERKARIAELLELVGLRSEVADKLPRQLSGGQLQRINIARAL-AVKPKLIVLDEA-- 178 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHH-HCCCCEEEEHHH--
T ss_conf 16257899998625776654889999999999998608896798428700057468999999997-308973753222--
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 665420445563679999999999975307978999863036654331145787753027851
Q gi|254780334|r 179 LWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 179 l~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
+ +++| -+.|. .+..-|..+=.+.|++.++|-| .-+.++...|-|+-+|
T Consensus 179 v--SnLD----~~lQ~-~iL~lL~~L~q~~G~aylfitH--------DL~lv~~f~~r~~vm~ 226 (267)
T TIGR02769 179 V--SNLD----LVLQA-VILELLKKLQQEFGTAYLFITH--------DLRLVQKFCQRVLVMD 226 (267)
T ss_pred H--HHHH----HHHHH-HHHHHHHHHHHHHCCEEEHHHH--------HHHHHHHHHHHHHHHC
T ss_conf 5--5767----99999-9999999998700955413564--------7999999987775541
No 468
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=96.83 E-value=0.0017 Score=45.02 Aligned_cols=96 Identities=24% Similarity=0.391 Sum_probs=58.6
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-------HHHHHHHCC-----CCCCC
Q ss_conf 888865985787089995498751889999999998503981999986463047-------888875201-----57751
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ-------IRLRAQRLN-----TINSS 146 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q-------i~~Ra~Rl~-----~~~~~ 146 (479)
|++++- --=.-.++=|+|.||+|||||.=.+-..+-++|++|..|.-.-|-.- =+.|.+++. ...++
T Consensus 28 l~~i~p-~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg 106 (333)
T TIGR00750 28 LERILP-KTGNAHVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPG 106 (333)
T ss_pred HHHHHH-HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 998624-3279078766468888577799999899976597689998879759755145456887754422223322898
Q ss_pred HHEECC-C---------CHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 000034-7---------88999999973169828997216
Q gi|254780334|r 147 VYIAIE-T---------NVEDIIATLITNEKPDLVIIDSI 176 (479)
Q Consensus 147 i~~~~e-~---------~l~~il~~~i~~~~~~~vVIDSI 176 (479)
+|+-+- + ...+++ .+.+..++|.++|-.+
T Consensus 107 ~FIRs~ptrG~lGGls~at~~~~-~lldA~G~DVI~vETV 145 (333)
T TIGR00750 107 VFIRSMPTRGSLGGLSKATRELV-KLLDAAGYDVILVETV 145 (333)
T ss_pred CEECCCCCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEEEE
T ss_conf 56767766675257879999999-9998638987999841
No 469
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0031 Score=43.11 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=44.3
Q ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 656403133345566632378124888865985787089995498751889999999998503981999986
Q gi|254780334|r 55 SISLFMLSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSG 126 (479)
Q Consensus 55 ~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~ 126 (479)
..+|..|+|+-.++. +---..-|.|++..|-++ ..++.|+||+|||||+.-++.... ..+..+|+
T Consensus 17 rmRP~~lde~vGQ~H--Llg~~~~lrr~v~~~~l~--SmIl~GPPG~GKTTlA~liA~~~~---~~f~~~sA 81 (436)
T COG2256 17 RLRPKSLDEVVGQEH--LLGEGKPLRRAVEAGHLH--SMILWGPPGTGKTTLARLIAGTTN---AAFEALSA 81 (436)
T ss_pred HHCCCCHHHHCCHHH--HHCCCCHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHC---CCEEEECC
T ss_conf 709777878557186--618994389999649986--057778999888899999987617---76699515
No 470
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.82 E-value=0.01 Score=39.29 Aligned_cols=120 Identities=24% Similarity=0.368 Sum_probs=69.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH-HHHHH--C----CCCCCCHHE---------
Q ss_conf 8578708999549875188999999999850398199998646304788-88752--0----157751000---------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIR-LRAQR--L----NTINSSVYI--------- 149 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~-~Ra~R--l----~~~~~~i~~--------- 149 (479)
-+.+|.++-|-|+=|+|||||++++..-+-=+.++ +.+.|+|-.+--| ++..| . .-+.+.+|.
T Consensus 14 ~~~~G~~~aLlG~NGaGKsTLl~~LnG~LrP~~G~-v~~dG~~l~YsrkgL~~~R~~V~~VfQdPDDQlF~a~V~~DVaF 92 (190)
T TIGR01166 14 AVERGEVLALLGANGAGKSTLLLHLNGLLRPQSGK-VLLDGEPLDYSRKGLLEVRQRVGLVFQDPDDQLFAADVDQDVAF 92 (190)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCE-EEECCEECCCCCHHHHHHCCEEEEEEECHHHHCCCCCCCCCCCC
T ss_conf 22057168987289985789988743677797555-87678540357244675250300376263442026762210033
Q ss_pred ------ECCCCHHHH------------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf ------034788999------------------------------99997316982899721687665420445563679
Q gi|254780334|r 150 ------AIETNVEDI------------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 150 ------~~e~~l~~i------------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
++|..++.. ++-+ -..+|+++|+|=- ++.+| |-..+|
T Consensus 93 GPlNLGL~e~Ev~~RV~eAL~~vg~~~~~~rp~h~LS~GekkRvAIAGA-vAM~Pd~l~LDEP----TAGLD--p~G~~q 165 (190)
T TIGR01166 93 GPLNLGLSEAEVERRVREALTAVGISGLEERPTHLLSGGEKKRVAIAGA-VAMRPDVLLLDEP----TAGLD--PAGAEQ 165 (190)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCCCCHHHHHHHHH-HHHCCCEEEEECC----CCCCC--HHHHHH
T ss_conf 5456733715767878999986063224412241155861357777758-8616634664278----88978--747999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999999999975307978999863
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~viligh 217 (479)
+.+..+.|. +.+.+|++--|
T Consensus 166 ~~~~l~~L~----~~G~tvv~STH 185 (190)
T TIGR01166 166 LLAILRRLR----AEGTTVVISTH 185 (190)
T ss_pred HHHHHHHHH----HCCCEEEEEEC
T ss_conf 999988787----23998999725
No 471
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.82 E-value=0.016 Score=37.90 Aligned_cols=123 Identities=23% Similarity=0.323 Sum_probs=68.4
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-------CH-HHHHHHHHHCCCCC----CCHHE----
Q ss_conf 8578708999549875188999999999850398199998646-------30-47888875201577----51000----
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-------AI-GQIRLRAQRLNTIN----SSVYI---- 149 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-------s~-~Qi~~Ra~Rl~~~~----~~i~~---- 149 (479)
-+.+|..++|.|+.|+|||||+-++|.-.+-. ...+|+-||. .. .|+..-+.+-.+.. +|+.+
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~-~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~ 103 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI 103 (223)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCC-CCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHH
T ss_conf 65388548876788766889999998136998-85288747334434859999999999728421466332231142577
Q ss_pred -----------------------E-C-CCCHH---HHHHHHHH--CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf -----------------------0-3-47889---99999973--16982899721687665420445563679999999
Q gi|254780334|r 150 -----------------------A-I-ETNVE---DIIATLIT--NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQ 199 (479)
Q Consensus 150 -----------------------~-~-e~~l~---~il~~~i~--~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~ 199 (479)
+ . .+++. .....++. ...|+++..|-+.....+ +--|.+-.
T Consensus 104 r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~---------~nkr~ie~ 174 (223)
T COG4619 104 RNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE---------SNKRNIEE 174 (223)
T ss_pred HCCCCCHHHHHHHHHHCCCCHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCHHHCCH---------HHHHHHHH
T ss_conf 536888679999998707964664140233166078999999986307746873371433382---------56888999
Q ss_pred HHHHHHHHCCCEEEEEEEE
Q ss_conf 9999753079789998630
Q gi|254780334|r 200 AMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 200 ~L~~~AK~~~i~vilighv 218 (479)
-+.+|-.+.+++++-|-|-
T Consensus 175 mi~~~v~~q~vAv~WiTHd 193 (223)
T COG4619 175 MIHRYVREQNVAVLWITHD 193 (223)
T ss_pred HHHHHHHHHCEEEEEEECC
T ss_conf 9999700424589999538
No 472
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.81 E-value=0.033 Score=35.61 Aligned_cols=41 Identities=12% Similarity=0.336 Sum_probs=27.9
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 316982899721687665420445563679999999999975307978999863
Q gi|254780334|r 164 TNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 164 ~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~viligh 217 (479)
--.+|++++.|=-. ..+|. +...+|..+.++.+.++++|-|
T Consensus 171 L~~~PdlLlLDEPT----n~LD~---------~~~~~L~~~L~~~~gtvliISH 211 (632)
T PRK11147 171 LVSNPDVLLLDEPT----NHLDI---------ETIEWLEGFLKTFQGSIIFISH 211 (632)
T ss_pred HCCCCCEEEEECCC----CCCCH---------HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 56899999984887----65899---------9999999999975984999975
No 473
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.80 E-value=0.0023 Score=44.05 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=37.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 8708999549875188999999999850398199998646
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE 128 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE 128 (479)
+|.++-++|-||+|||||+-.+...+.+.+.++.++.|++
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~ 40 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDN 40 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 9889998898999999999999999997599779976887
No 474
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=96.80 E-value=0.006 Score=41.03 Aligned_cols=121 Identities=21% Similarity=0.341 Sum_probs=68.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHH----------------------HHHH--------
Q ss_conf 8578708999549875188999999999850398199998646304----------------------7888--------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIG----------------------QIRL-------- 135 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~----------------------Qi~~-------- 135 (479)
-+.+|..+-+-|-.|||||||+ .+.+.+.+...-.++..|.+-.+ -|.+
T Consensus 7 ~i~~GEFisliGHSGCGKSTLL-Nli~Gl~~P~~G~v~L~G~~i~~PGPdRMVVFQNYsLlPW~tvr~NiaLAV~~v~~~ 85 (230)
T TIGR01184 7 TIRQGEFISLIGHSGCGKSTLL-NLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLRD 85 (230)
T ss_pred EEECCCEEEEECCCCCCHHHHH-HHHHHCCCCCCCCEEECCEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5526736998512786178999-998500577776167626241787696047850620032256888999999999862
Q ss_pred --HHHHCCCCCCCHHEE-----CCCCHHHH---------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHH-HH
Q ss_conf --875201577510000-----34788999---------99997316982899721687665420445563679999-99
Q gi|254780334|r 136 --RAQRLNTINSSVYIA-----IETNVEDI---------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRT-SV 198 (479)
Q Consensus 136 --Ra~Rl~~~~~~i~~~-----~e~~l~~i---------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre-~~ 198 (479)
+.||-.+..+.+.+. .+....++ ++.. -...|+++++|--= .-+|.- .|+ .-
T Consensus 86 ~~~~E~~~iv~~~~~lVgL~~Aa~K~p~~lSGGMKQRVAIARa-Ls~RP~~LlLDEPF----GALDAl------Tr~~LQ 154 (230)
T TIGR01184 86 LSKSERRAIVEEHIDLVGLREAADKRPGQLSGGMKQRVAIARA-LSIRPKVLLLDEPF----GALDAL------TRGNLQ 154 (230)
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHCCCCHHCCCCHHHHHHHHHH-HHHCCEEEEEECCC----CHHHHH------HHHHHH
T ss_conf 1354799999988864021234117800305842689999866-53176012310874----056675------268899
Q ss_pred HHHHHHHHHCCCEEEEEEEE
Q ss_conf 99999753079789998630
Q gi|254780334|r 199 QAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 199 ~~L~~~AK~~~i~vilighv 218 (479)
.+|+++++++.+|++.|-|-
T Consensus 155 e~L~~I~~e~~~T~~MvTHD 174 (230)
T TIGR01184 155 EELLQIVEEARVTVVMVTHD 174 (230)
T ss_pred HHHHHHHHHCCCEEEEEECC
T ss_conf 99999873169748998524
No 475
>pfam00265 TK Thymidine kinase.
Probab=96.80 E-value=0.036 Score=35.37 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=82.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 7089995498751889999999998503981999986463----047888875201577510000347889999999731
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA----IGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs----~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
|++.++.|+=-+||||-+++.+......|.+++++.-+.. ...+. -|.+...+... .....+.++... ..
T Consensus 1 G~L~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D~R~~~~~i~---Sh~g~~~~~~~-~~~~~~~~~~~~--~~ 74 (175)
T pfam00265 1 GSIELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDNRYGTGKVV---THDGISMEAKL-IKTSLLDDIKDI--IS 74 (175)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEE---CCCCCCCCCEE-CCCCHHHHHHHH--HC
T ss_conf 9499999251778999999999999987993999946112778999698---89998114567-365319999986--43
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECC--CCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 6982899721687665420445563679999999999975307978999863036--6543311457877530278515
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTK--EGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK--~G~iAGp~~LeH~VD~vl~~eg 242 (479)
.+++++.||=.|-+ + |+.+ +...+-+.+++|++-|--+- .-.+-+...|--+.|.|..+.+
T Consensus 75 ~~~dvI~IDEaQFf--~----------~l~~----~~~~~~~~~~~Viv~GLd~D~~~~~F~~i~~Li~~Ad~V~kl~a 137 (175)
T pfam00265 75 NTIHVVGIDEAQFF--D----------DIVE----FCETMANLGKIVIVAGLDGDFQRKPFGNILNLLPLAEKVTKLKA 137 (175)
T ss_pred CCCCEEEEEHHHHH--H----------HHHH----HHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEEE
T ss_conf 68789998337752--6----------4899----99999967994999875030115854479999962796999804
No 476
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.015 Score=38.13 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=25.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 857870899954987518899999999985
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLA 115 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a 115 (479)
-+.+|+.+-+.|..|+|||||+--++.-+.
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 754896799988999978999999847577
No 477
>KOG0058 consensus
Probab=96.80 E-value=0.033 Score=35.68 Aligned_cols=102 Identities=25% Similarity=0.240 Sum_probs=56.8
Q ss_pred EEEEEECCCCCC---------------CCEEEEECCCHHHHHHHHHHHHHHCCC-----CCCCCHHHEECCCCCCCCCCC
Q ss_conf 533101157787---------------724776046866655558988751111-----024622210014561115432
Q gi|254780334|r 313 EIQSLVVPTSLG---------------MPRRTVVGWDSSRLAMILAVLEARCNI-----KFGNHDVHLNIAGGYRISEPA 372 (479)
Q Consensus 313 EvQALv~~~~~~---------------~p~R~~~G~d~~rl~~llAvl~k~~~~-----~~~~~Di~~nv~gG~~i~~pa 372 (479)
|+-|||.|+..| ..+-...|+|...++ .-.++++.++ .|.+..|-=|+.=|.. .+.
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~--~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~--~~t 570 (716)
T KOG0058 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN--HKYLRRKIGLVGQEPVLFSGSIRENIAYGLD--NAT 570 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHCC--HHHHHHHEEEEECCCEEECCCHHHHHHCCCC--CCC
T ss_conf 779998899988899999999736888873877883456418--7999877143102655504517877752788--888
Q ss_pred CCHHHHHHH-HHH---HCCCCCCCCEEEEEEE--ECCCEEEEECCHHHHHHHHHHCCCC
Q ss_conf 587999999-997---2488688785999874--2473163407889999999976998
Q gi|254780334|r 373 ADVAVAAAL-ISS---ILSIPLPSDFVYFGEV--SLSGSVRAVGHMQQRLKEAEKIGFL 425 (479)
Q Consensus 373 ~DLaia~ai-lSs---~~~~~~~~~~~~~GEl--~L~GeIR~V~~i~~ri~eA~~~G~~ 425 (479)
.|--..+|- .-+ ..+.|.-=++ .+||= -|+| |-.+||.=|+-+=-+
T Consensus 571 ~e~i~~AAk~ANah~FI~~~p~gY~T-~VGEkG~qLSG------GQKQRIAIARALlr~ 622 (716)
T KOG0058 571 DEEIEAAAKMANAHEFITNFPDGYNT-VVGEKGSQLSG------GQKQRIAIARALLRN 622 (716)
T ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCC-CCCCCCCCCCC------HHHHHHHHHHHHHHC
T ss_conf 99999999984738899828765556-54775460663------188999999998509
No 478
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0052 Score=41.48 Aligned_cols=137 Identities=26% Similarity=0.362 Sum_probs=92.1
Q ss_pred CCCEEEEEEE--CCCCCC-EEEEEEEECCCCCCCCEEEEECCCHHHH---HHHHHH------HHH-HCCCCCCCCHHHEE
Q ss_conf 6734899730--489741-1553310115778772477604686665---555898------875-11110246222100
Q gi|254780334|r 295 SPGTAVFAGI--EGTRAL-LVEIQSLVVPTSLGMPRRTVVGWDSSRL---AMILAV------LEA-RCNIKFGNHDVHLN 361 (479)
Q Consensus 295 ~~Gs~v~~~~--eG~r~~-lvEvQALv~~~~~~~p~R~~~G~d~~rl---~~llAv------l~k-~~~~~~~~~Di~~n 361 (479)
-||.+-.++- -|...+ -.|+|-.... .+...+|+..+.- ++-.+. +.+ -..++++.+|-|++
T Consensus 502 kpg~~~~v~~~~~g~~glyrfe~q~~ag~-----gk~~~sg~gs~t~~keair~~f~yfk~n~~~vs~t~~~~e~~y~lh 576 (683)
T COG4930 502 KPGVVHLVTQAESGMTGLYRFETQMTAGN-----GKHSVSGLGSSTSAKEAIRVGFDYFKGNLSRVSATAKFSEHEYHLH 576 (683)
T ss_pred CCCEEEEEEECCCCCEEEEEEEEEEEECC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCEEEECCCEEEEE
T ss_conf 98638887410357413588888985058-----7333466787720788999888885031554000152032102677
Q ss_pred CCCCCCCCCC--CCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHC
Q ss_conf 1456111543--258799999999724886887859998742473163407889999999976998999775765322
Q gi|254780334|r 362 IAGGYRISEP--AADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGEC 437 (479)
Q Consensus 362 v~gG~~i~~p--a~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~ 437 (479)
++.=.. .+| +..||-.+|+.|....+|+.++++++|...|.|-|.||..+..-+.-|-..|.|++.+|-.++.+.
T Consensus 577 v~~l~~-~g~s~~~sl~a~ialcs~~l~k~~qeq~~vlgsmtlgg~i~~~~~la~~lq~~~dsgakkv~lp~ssa~~i 653 (683)
T COG4930 577 VVELHN-TGPSTATSLAALIALCSVLLAKPVQEQMVVLGSMTLGGVINPVQDLAASLQLAFDSGAKKVLLPMSSAVDI 653 (683)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 653006-78404666999999989986020776563310013054041688889999998845875588763345776
No 479
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.79 E-value=0.0082 Score=40.08 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=35.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 089995498751889999999998503981999986463
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA 129 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs 129 (479)
.+++++|-=|+||||.+..+|..+|..|.++|.+|.+-.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 799993688545899999999999975990799984898
No 480
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.006 Score=41.08 Aligned_cols=63 Identities=29% Similarity=0.485 Sum_probs=39.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCCCE
Q ss_conf 08999549875188999999999850398199998646304788887520157751000034788999999973169828
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDL 170 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~~~ 170 (479)
.-+|+.|+||.|||||+.=+|..+. .+.-+.||- .+....|+-.++.. ++ .-|+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emg---vn~k~tsGp--------------------~leK~gDlaaiLt~-Le--~~DV 106 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELG---VNLKITSGP--------------------ALEKPGDLAAILTN-LE--EGDV 106 (332)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC---CCEEECCCC--------------------CCCCHHHHHHHHHC-CC--CCCE
T ss_conf 7478647998768889999999856---773763662--------------------01572659999863-98--6776
Q ss_pred EEECHHHHH
Q ss_conf 997216876
Q gi|254780334|r 171 VIIDSIQTL 179 (479)
Q Consensus 171 vVIDSIQtl 179 (479)
++||-|..+
T Consensus 107 LFIDEIHrl 115 (332)
T COG2255 107 LFIDEIHRL 115 (332)
T ss_pred EEEEHHHHC
T ss_conf 777255314
No 481
>PTZ00243 ABC transporter; Provisional
Probab=96.76 E-value=0.011 Score=39.26 Aligned_cols=42 Identities=33% Similarity=0.506 Sum_probs=33.8
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC------CCCEEEEECC
Q ss_conf 85787089995498751889999999998503------9819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYK------KHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~------g~~vlYvS~E 127 (479)
=+.+|+++.|.|+-|+|||||+..+...+... .+++.|++=+
T Consensus 682 ~v~~G~L~~IvG~vGSGKSSLL~aiLGE~~~~~G~v~~~g~iAYv~Q~ 729 (1560)
T PTZ00243 682 SVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQ 729 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCEEEECCC
T ss_conf 865997899989999879999999968884356389974708975784
No 482
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=96.76 E-value=0.039 Score=35.13 Aligned_cols=56 Identities=30% Similarity=0.438 Sum_probs=50.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCC
Q ss_conf 78708999549875188999999999850398199998646----304788887520157
Q gi|254780334|r 88 VRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTI 143 (479)
Q Consensus 88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~ 143 (479)
-+..++|+.|==|+||||=.--+|..+.+.|++|+-..+.- ..+|+...++|+|+.
T Consensus 80 ~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~ 139 (284)
T TIGR00064 80 KKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVD 139 (284)
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCE
T ss_conf 897799998440886010288999999874990899827524799999999989883875
No 483
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=96.75 E-value=0.061 Score=33.68 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=89.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH---HHHHHHHCCCCCC
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047---8888752015775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ---IRLRAQRLNTINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q---i~~Ra~Rl~~~~~ 145 (479)
.+-+.|||+.+|-++ -+.+|+=+.|.|.+|+|||+|+.|++.+. ....++|...-|.... +....+..+....
T Consensus 121 ~e~l~TGI~aID~l~--~l~rGQKi~IFsgsG~gks~L~~~Ia~~a--~~dvvV~~~iGer~~e~~~f~~~~~~~~~l~r 196 (432)
T PRK02118 121 REMIRTGIPMIDVFN--TLVKSQKIPIFSSSGEPYNALLARIALQA--EADIIILGGMGLTFDDYLFFKDEFEKAGALDR 196 (432)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCEEEEECCEEECHHHHHHHHHHHHCCCCCE
T ss_conf 767788967854236--74058569874479997639999998853--89989640332441258999998750687770
Q ss_pred CHHEECCCCH---H---------HHHHHHH-HCCCCCEEEECHHHHHH---------HHHH---CCCCCCHHHHHHHHHH
Q ss_conf 1000034788---9---------9999997-31698289972168766---------5420---4455636799999999
Q gi|254780334|r 146 SVYIAIETNV---E---------DIIATLI-TNEKPDLVIIDSIQTLW---------SQTA---ESSPGTVIQVRTSVQA 200 (479)
Q Consensus 146 ~i~~~~e~~l---~---------~il~~~i-~~~~~~~vVIDSIQtl~---------~~~~---~s~~GsvsQvre~~~~ 200 (479)
...+....+- + .+-+... ++.+--++++||+.... ..+. .+.|+++. .-...
T Consensus 197 tvlv~~ts~~p~~~R~~~~~~altiAEyfr~d~G~~VLli~DdlTr~A~A~REIs~~~ge~P~r~GYP~~l~---s~La~ 273 (432)
T PRK02118 197 TVMFVHTAVDPPVECLLVPDMALAVAEKFAVEEGKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLY---SDLAK 273 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH---HHHHH
T ss_conf 799834777898998778888888999998745972999976678877788789875489998778695399---99999
Q ss_pred HHHHH---HHC-CCEEEEEEEECC-CCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 99975---307-978999863036-6543311--45787753027851
Q gi|254780334|r 201 MIQYA---KKN-GVAMVLVGHVTK-EGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 201 L~~~A---K~~-~i~vilighvTK-~G~iAGp--~~LeH~VD~vl~~e 241 (479)
|..-| +.. -||.|-+ |+- .+.+..| ...-.+.|.-++|.
T Consensus 274 l~ERAg~~~~~GSIT~i~~--v~~p~dD~t~Pi~d~t~~ItdGqIvLs 319 (432)
T PRK02118 274 RYEKAVDFADGGSITIIAV--TTMPGDDITHPVPDNTGYITEGQFYLK 319 (432)
T ss_pred HHHHCCCCCCCEEEEEEEE--EECCCCCCCCCHHHHHHHHHCCEEEEE
T ss_conf 9983468999802689999--975787777756889999857768850
No 484
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.75 E-value=0.033 Score=35.65 Aligned_cols=135 Identities=20% Similarity=0.310 Sum_probs=75.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHH----------------------------
Q ss_conf 8578708999549875188999999999850398199998646-30478888----------------------------
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE-AIGQIRLR---------------------------- 136 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE-s~~Qi~~R---------------------------- 136 (479)
-+..|..+-|.|+.|.|||||+--+|.-..-..+. +.+.+++ +..+-..|
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~-i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE-ILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCE-EEECCEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCC
T ss_conf 60678579997788865788999987424778745-89857214768954487311110056421102655324567866
Q ss_pred --------------HHHCCCCCCCHHEECCC-----CHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH-H
Q ss_conf --------------75201577510000347-----889999999731698289972168766542044556367999-9
Q gi|254780334|r 137 --------------AQRLNTINSSVYIAIET-----NVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR-T 196 (479)
Q Consensus 137 --------------a~Rl~~~~~~i~~~~e~-----~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr-e 196 (479)
+.|.|+.+-.-.+-.+. .-- .++...-..+|-++...+..++ + |+ .| |
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRv-ALARclvR~~PilLLDEPFsAL-----d--P~----LR~e 167 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV-ALARCLVREQPILLLDEPFSAL-----D--PA----LRAE 167 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHH-HHHHHHHCCCCEEEECCCHHHC-----C--HH----HHHH
T ss_conf 524888999999999985755575409622474077899-9999880268757754811331-----9--78----8999
Q ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 999999975307978999863036654331145787753027851
Q gi|254780334|r 197 SVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE 241 (479)
Q Consensus 197 ~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e 241 (479)
...-+.++|.+++.++++|-|- |.-.-++.|-++.++
T Consensus 168 Ml~Lv~~l~~E~~~TllmVTH~--------~~Da~~ia~~~~~l~ 204 (231)
T COG3840 168 MLALVSQLCDERKMTLLMVTHH--------PEDAARIADRVVFLD 204 (231)
T ss_pred HHHHHHHHHHHHCCEEEEEECC--------HHHHHHHHHCEEEEE
T ss_conf 9999999988428779999578--------889997652069985
No 485
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=96.75 E-value=0.015 Score=38.20 Aligned_cols=144 Identities=17% Similarity=0.270 Sum_probs=70.1
Q ss_pred CCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC---C-CEEEEECCCC-HHHHHHHHHHCC-CCC
Q ss_conf 323781248888659857870899954987518899999999985039---8-1999986463-047888875201-577
Q gi|254780334|r 71 RIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK---H-RITYVSGEEA-IGQIRLRAQRLN-TIN 144 (479)
Q Consensus 71 Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g---~-~vlYvS~EEs-~~Qi~~Ra~Rl~-~~~ 144 (479)
+++-|..+-.+..---+....-+||+|.+|.|||+++..+..+++... + .+..+..... ............ +..
T Consensus 19 ~vp~G~~~~G~pv~~dl~~~pH~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD~K~~~~~~~~~~~h~~~~~~~ 98 (202)
T pfam01580 19 TIALGKDISGNPVVADLVKMPHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKGGELAALEDLPHLLSAVAT 98 (202)
T ss_pred EEEEEECCCCCEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCCCCCCC
T ss_conf 48777679999899863568868996589998009999999999873796206999974896126767635654433768
Q ss_pred C--CH---------------HEECCC---CHHHHHHH----------HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf 5--10---------------000347---88999999----------973169828997216876654204455636799
Q gi|254780334|r 145 S--SV---------------YIAIET---NVEDIIAT----------LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 145 ~--~i---------------~~~~e~---~l~~il~~----------~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
+ .. .++.+. ++.+.-.. ......+-++|||-.+.+....-+. .-..+
T Consensus 99 d~e~~~~~l~~l~~em~rR~~ll~~~g~~~i~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~~~l~~~~~~~---~~~~~ 175 (202)
T pfam01580 99 DPEDALSALRALVAEMERRYALLKQLGVRSIEEYNGEIAEDILGGAGWLEELPPIVVIVDERAELMLAAPKD---SEMRV 175 (202)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHCCHH---HHHHH
T ss_conf 999999999999999999999999838876899999866432124554334781898644599998655504---68999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 99999999975307978999863
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~viligh 217 (479)
.+...+|.+.....+|.+++.-|
T Consensus 176 ~~~l~~iar~GRa~GihlilatQ 198 (202)
T pfam01580 176 EGALARLARMGRAAGIHLLLATQ 198 (202)
T ss_pred HHHHHHHHHHHHHCCEEEEEEEC
T ss_conf 99999999988733829999818
No 486
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.014 Score=38.43 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=53.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC-CCCHHEECCCC------HHHHHHHHHH
Q ss_conf 8999549875188999999999850398199998646304788887520157-75100003478------8999999973
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI-NSSVYIAIETN------VEDIIATLIT 164 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~-~~~i~~~~e~~------l~~il~~~i~ 164 (479)
..|+.|+||+||||+++.+|..+-..........+.. ..+..+... ..+++.+.+.+ ..+.+....+
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~ 99 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC------RSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAE 99 (325)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHH------HHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 1003799999789999999999658664334552002------2444320256886599773213333006999999998
Q ss_pred -------CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEEEE
Q ss_conf -------16982899721687665420445563679999999999975--307978999863
Q gi|254780334|r 165 -------NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYA--KKNGVAMVLVGH 217 (479)
Q Consensus 165 -------~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~A--K~~~i~viligh 217 (479)
..+.++++||....|.. ...+.|...- +..++.++++-+
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HCCCCCCCCCCEEEEEECCCCCCH--------------HHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 604465667726999732032698--------------888767543324888716999749
No 487
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.73 E-value=0.033 Score=35.67 Aligned_cols=94 Identities=21% Similarity=0.200 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEE-ECCCCHHHHHHHHHHCCCCCCCHHEE-----------CC
Q ss_conf 85787089995498751889999999998503981-9999-86463047888875201577510000-----------34
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHR-ITYV-SGEEAIGQIRLRAQRLNTINSSVYIA-----------IE 152 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~-vlYv-S~EEs~~Qi~~Ra~Rl~~~~~~i~~~-----------~e 152 (479)
=+-+|+=-||..+|.+|||||+-++|.+++.+... -+++ =-.|-++.+...- | .+..+-+.-. ++
T Consensus 128 PIGkGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDERPEEVTdm~-r-~v~gEVvaSTfD~~~~~h~~vAe 205 (379)
T PRK12608 128 PIGKGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDERPEEVTDMK-R-SVKGEVYASTFDRPYDRHIRVAE 205 (379)
T ss_pred CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH-H-HCCEEEEEECCCCCHHHHHHHHH
T ss_conf 634574012745898657899999999998579984899998168935888888-6-23707999779899899999999
Q ss_pred CCHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 788999999973169828997216876654
Q gi|254780334|r 153 TNVEDIIATLITNEKPDLVIIDSIQTLWSQ 182 (479)
Q Consensus 153 ~~l~~il~~~i~~~~~~~vVIDSIQtl~~~ 182 (479)
.-++. -+.+++..+.-++++|||.-+...
T Consensus 206 l~ler-AkrlvE~G~dVvillDSiTRlaRA 234 (379)
T PRK12608 206 LVLER-AKRLVEEGKDVVILLDSLTRLARA 234 (379)
T ss_pred HHHHH-HHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 99999-999987699689996517788998
No 488
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=96.73 E-value=0.01 Score=39.33 Aligned_cols=87 Identities=18% Similarity=0.352 Sum_probs=56.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH--HHHH-------------------C--CCCCCCHH
Q ss_conf 89995498751889999999998503981999986463047888--8752-------------------0--15775100
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL--RAQR-------------------L--NTINSSVY 148 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~--Ra~R-------------------l--~~~~~~i~ 148 (479)
++.-+|--|+||||....+..++|+.|++|+.+.+.-...-+.+ -+|| | ....++++
T Consensus 5 IVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~ 84 (272)
T COG2894 5 IVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLENLF 84 (272)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHCCCCCCCEE
T ss_conf 99944888767431067789999973985999966767204466643420156540134447663656764035678526
Q ss_pred EECCC-----------CHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 00347-----------88999999973169828997216876
Q gi|254780334|r 149 IAIET-----------NVEDIIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 149 ~~~e~-----------~l~~il~~~i~~~~~~~vVIDSIQtl 179 (479)
+++.. .++.+++.+.+ ...+.+++||-.-+
T Consensus 85 lLPAsQtrdKdalt~E~v~~vv~eL~~-~~fDyIi~DsPAGI 125 (272)
T COG2894 85 LLPASQTRDKDALTPEGVKKVVNELKA-MDFDYIIIDSPAGI 125 (272)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCHH
T ss_conf 614432367222799999999999976-69988996484067
No 489
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.73 E-value=0.011 Score=39.23 Aligned_cols=87 Identities=26% Similarity=0.365 Sum_probs=49.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-CCCC-----CC-CHHEECCCCHHHHHHHHH
Q ss_conf 0899954987518899999999985039819999864630478888752-0157-----75-100003478899999997
Q gi|254780334|r 91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR-LNTI-----NS-SVYIAIETNVEDIIATLI 163 (479)
Q Consensus 91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~R-l~~~-----~~-~i~~~~e~~l~~il~~~i 163 (479)
-.+-++|+||+|||+|..+++.++..+ ++...|.+.---..=..|..| .+.. .. ....-.....+. ++++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~a-i~~l~ 91 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEA-IEELV 91 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH-HHHHH
T ss_conf 899961799867899999999999752-7768996404006559999737798068740387658867889999-99986
Q ss_pred HCCC-CCEEEECHHHHH
Q ss_conf 3169-828997216876
Q gi|254780334|r 164 TNEK-PDLVIIDSIQTL 179 (479)
Q Consensus 164 ~~~~-~~~vVIDSIQtl 179 (479)
.... .|+++|.|.-.+
T Consensus 92 ~~~~~~Dll~iEs~GNL 108 (202)
T COG0378 92 LDFPDLDLLFIESVGNL 108 (202)
T ss_pred HCCCCCCEEEEECCCCE
T ss_conf 31776778999237643
No 490
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=96.70 E-value=0.026 Score=36.39 Aligned_cols=147 Identities=21% Similarity=0.246 Sum_probs=80.8
Q ss_pred EEEECC-CCCCHHHHHHHHHHHHHCCCCCEEEEE----CC-----CCHHHHHHHHHHCCCCCC--CHHEEC---------
Q ss_conf 999549-875188999999999850398199998----64-----630478888752015775--100003---------
Q gi|254780334|r 93 ILVGGD-PGIGKSTLLMQTAASLAYKKHRITYVS----GE-----EAIGQIRLRAQRLNTINS--SVYIAI--------- 151 (479)
Q Consensus 93 ~Li~G~-PGvGKSTL~Lqia~~~a~~g~~vlYvS----~E-----Es~~Qi~~Ra~Rl~~~~~--~i~~~~--------- 151 (479)
+.|+|. .++|||++.+-++..+.++|.+|.|+= |- .+-.+.-.++-.+..... +.+.+.
T Consensus 2 ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~KPv~tG~~~~~~~~Da~~~~~~~~~~~~~~~~~p~~~~~p~sP~~aa 81 (223)
T PRK00090 2 LFVTGTDTGVGKTVVTAALAQALREQGYRVAGYKPVQSGCDGGLRNGDALALQRLSGLPLDYELVNPYRFEEPLSPHLAA 81 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHH
T ss_conf 89986899976999999999999978994899751204898899727999999980899986760540258898989999
Q ss_pred -----CCCHHHHHHHHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
Q ss_conf -----4788999999973-1698289972168766542044556367999999999997530797899986303665433
Q gi|254780334|r 152 -----ETNVEDIIATLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIA 225 (479)
Q Consensus 152 -----e~~l~~il~~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iA 225 (479)
..+++.+.+...+ ..+.++++|.-.--++++.... ..+.++|+..+.++++|.-. +-|
T Consensus 82 ~~~g~~i~~~~i~~~~~~l~~~~d~vlvEGaGGl~~Pl~~~------------~~~~Dla~~l~~pvILV~~~-~lG--- 145 (223)
T PRK00090 82 RLEGVTIDLEKISAALRELAQQADLVLVEGAGGLLVPLTDD------------LTLADLAAQLQLPVILVVGV-KLG--- 145 (223)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCC---
T ss_conf 99098468999999999998318989994688655675678------------78899999968898999769-888---
Q ss_pred CHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 114578775302785155566654421567632025676
Q gi|254780334|r 226 GPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPT 264 (479)
Q Consensus 226 Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t 264 (479)
.+-|.+-++-++. ..+.++.-.+=|+|.+.
T Consensus 146 ---~inhtllt~eal~------~~gl~v~GvI~N~~~~~ 175 (223)
T PRK00090 146 ---CINHTLLTLEAIR------ARGLPLAGWVANGVPPE 175 (223)
T ss_pred ---HHHHHHHHHHHHH------HCCCCEEEEEEECCCCC
T ss_conf ---0999999899999------68994899999685883
No 491
>KOG0732 consensus
Probab=96.70 E-value=0.025 Score=36.56 Aligned_cols=389 Identities=13% Similarity=0.128 Sum_probs=175.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC--CCCCCCHHHHHHH-----
Q ss_conf 767563630077178889867079885247765554444455566564031333455666--3237812488886-----
Q gi|254780334|r 11 QSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFMLSEESIEEES--RIQTHIDELDRVT----- 83 (479)
Q Consensus 11 ~~Cg~~~~kW~G~Cp~C~~Wnt~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--Ri~TGi~eLDrvL----- 83 (479)
.-|+.....|.++--.|..|.+-.+.....................+. .|.+.-... +=--++.+|+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~---~d~dp~~~~~~v~fd~vggl~~~i~~LKE 279 (1080)
T KOG0732 203 HMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE---ADSDPLSVDSSVGFDSVGGLENYINQLKE 279 (1080)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHCCCC---CCCCCHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 212465312321223333213556621023244267643201210553---33675102103686333457888999999
Q ss_pred -------------CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHE-
Q ss_conf -------------598578708999549875188999999999850398199998646304788887520157751000-
Q gi|254780334|r 84 -------------GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYI- 149 (479)
Q Consensus 84 -------------GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~- 149 (479)
.=++.|-.=+|+.|+||+|||..+-.+|+++.+.+.++.|+- |-|.+...-|+
T Consensus 280 mVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffm-------------rkgaD~lskwvg 346 (1080)
T KOG0732 280 MVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFM-------------RKGADCLSKWVG 346 (1080)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHH-------------HCCCHHHCCCCC
T ss_conf 8876764056764126689863230289987256888866654054110202443-------------148443325447
Q ss_pred ECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCC-CCHHHHHHHH-HHHHHH--HHHCCCEEEEEEEECCCCCCC
Q ss_conf 034788999999973169828997216876654204455-6367999999-999997--530797899986303665433
Q gi|254780334|r 150 AIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSP-GTVIQVRTSV-QAMIQY--AKKNGVAMVLVGHVTKEGQIA 225 (479)
Q Consensus 150 ~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~-GsvsQvre~~-~~L~~~--AK~~~i~vilighvTK~G~iA 225 (479)
-.|-++..+.+. .+...|.++..|-|+-+. -.+ ...-|++... ..|..+ .-+.-=.+++||..+....+-
T Consensus 347 EaERqlrllFee-A~k~qPSIIffdeIdGla-----pvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~d 420 (1080)
T KOG0732 347 EAERQLRLLFEE-AQKTQPSIIFFDEIDGLA-----PVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAID 420 (1080)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 577889988988-744485177305556646-----56536677744567777887604777778658971567833246
Q ss_pred CHHHHHHHHHEEEEEECCCC-CCCCCCEEEEEEEECCCCCC----------------------------------CEEEE
Q ss_conf 11457877530278515556-66544215676320256765----------------------------------12799
Q gi|254780334|r 226 GPRVIEHMVDAVLYFEGGTR-NTQYDYRILRSVKNRFGPTD----------------------------------EIGVF 270 (479)
Q Consensus 226 Gp~~LeH~VD~vl~~ege~~-~~~~~~R~Lr~~KNRfG~t~----------------------------------e~gvf 270 (479)
..-.-.|=.|..+||--... .+...++ +++. +++-+.. .--+|
T Consensus 421 paLRRPgrfdref~f~lp~~~ar~~Il~-Ihtr-kw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y 498 (1080)
T KOG0732 421 PALRRPGRFDREFYFPLPDVDARAKILD-IHTR-KWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIY 498 (1080)
T ss_pred HHHCCCCCCCEEEEEECCCHHHHHHHHH-HHCC-CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 5442886665257503786678889998-7515-7778877789999988623400578998888875543045658142
Q ss_pred EECCCCCEEECCHH---HHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 85156631101404---555114766767348997304897411553310115778772477604686665555898875
Q gi|254780334|r 271 EMSDKGLQEVSDPS---KIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEA 347 (479)
Q Consensus 271 ~m~~~Gl~~v~~ps---~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G~d~~rl~~llAvl~k 347 (479)
.-.+.-+..+.-++ ..|+..-....+-+.- -...=++|+--.+--|.. +..--....| .-+++.-++-.+.
T Consensus 499 ~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R-~~~~~s~Pl~~~~~~ll~---~~~~~~~iq~--~~~va~~~~k~~e 572 (1080)
T KOG0732 499 SSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR-SSVIFSRPLSTYLKPLLP---FQDALEDIQG--LMDVASSMAKIEE 572 (1080)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCEECCCC---HHHHHHHHHC--CHHHHHHHHHHHH
T ss_conf 224321345011100267666543003777775-556778888843010311---2888887521--1237764011777
Q ss_pred HCCCCCCCCHHHEEC----CCCCCCCCC--CCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHH
Q ss_conf 111102462221001----456111543--25879999999972488688785999874247316340788999999997
Q gi|254780334|r 348 RCNIKFGNHDVHLNI----AGGYRISEP--AADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAEK 421 (479)
Q Consensus 348 ~~~~~~~~~Di~~nv----~gG~~i~~p--a~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~ 421 (479)
++-+.+..++.+..+ -.-+-+.+. ..+=+...||+..+...++. ...+.-.+...|---+...+....+||++
T Consensus 573 ~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~-s~~issll~d~~~~~~~~~iv~i~~eaR~ 651 (1080)
T KOG0732 573 HLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQ-SLDISSLLSDEGTEDLEEEIVHIFMEARK 651 (1080)
T ss_pred HHHHHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHCCCHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 76777875411101234327087607986656575508999988514057-77788987556652478999999998731
Q ss_pred CCCCEEEEC
Q ss_conf 699899977
Q gi|254780334|r 422 IGFLSGVFP 430 (479)
Q Consensus 422 ~G~~~~iiP 430 (479)
.+=.-++||
T Consensus 652 ~~psi~~ip 660 (1080)
T KOG0732 652 TTPSIVFIP 660 (1080)
T ss_pred CCCCEEECC
T ss_conf 588334235
No 492
>KOG0727 consensus
Probab=96.68 E-value=0.019 Score=37.38 Aligned_cols=123 Identities=17% Similarity=0.287 Sum_probs=71.0
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC
Q ss_conf 23781248888659857870899954987518899999999985039819999864630478888752015775100003
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI 151 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~ 151 (479)
++.--.+|-+-. |+-|-.-+|+.|+||+|||.|+-.+|.+-+ +.|+-.-.|.- +.. -||- .
T Consensus 173 lplt~~~ly~qi--gidpprgvllygppg~gktml~kava~~t~-----a~firvvgsef-vqk---ylge--------g 233 (408)
T KOG0727 173 LPLTHADLYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRVVGSEF-VQK---YLGE--------G 233 (408)
T ss_pred CCCHHHHHHHHH--CCCCCCCEEEECCCCCCHHHHHHHHHHCCC-----HHEEEECCHHH-HHH---HHCC--------C
T ss_conf 653078899970--889986227757999757899999861261-----11446301899-999---8554--------8
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HHHCCCEEEE
Q ss_conf 47889999999731698289972168766542044556367999999999997----5307978999
Q gi|254780334|r 152 ETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQY----AKKNGVAMVL 214 (479)
Q Consensus 152 e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~----AK~~~i~vil 214 (479)
..-+.++.. +..+..|.+++||-|-++.+..++...|.--+|..+.-+|... -...|+-+++
T Consensus 234 prmvrdvfr-lakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvim 299 (408)
T KOG0727 234 PRMVRDVFR-LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIM 299 (408)
T ss_pred CHHHHHHHH-HHHCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 389999999-876169837986224567664124444631899999999997514767666558998
No 493
>KOG3062 consensus
Probab=96.67 E-value=0.0068 Score=40.66 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=51.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHCCCCCCCHHE--ECCCCHHHHHHHHHH--CC
Q ss_conf 89995498751889999999998503981-99998646304788887520157751000--034788999999973--16
Q gi|254780334|r 92 VILVGGDPGIGKSTLLMQTAASLAYKKHR-ITYVSGEEAIGQIRLRAQRLNTINSSVYI--AIETNVEDIIATLIT--NE 166 (479)
Q Consensus 92 ~~Li~G~PGvGKSTL~Lqia~~~a~~g~~-vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~--~~e~~l~~il~~~i~--~~ 166 (479)
++++.|-|-+||||.+-++..++..+|.| ++|+.-+|| +|+.....+. -.|..+...+...++ -.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----------lg~~~ns~y~~s~~EK~lRg~L~S~v~R~Ls 72 (281)
T KOG3062 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----------LGIEKNSNYGDSQAEKALRGKLRSAVDRSLS 72 (281)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHH----------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 699937888882067999999998625551499954132----------1788742224457788889989999985335
Q ss_pred CCCEEEECHHH
Q ss_conf 98289972168
Q gi|254780334|r 167 KPDLVIIDSIQ 177 (479)
Q Consensus 167 ~~~~vVIDSIQ 177 (479)
+-++||+||+.
T Consensus 73 k~~iVI~DslN 83 (281)
T KOG3062 73 KGDIVIVDSLN 83 (281)
T ss_pred CCCEEEEECCC
T ss_conf 68689981444
No 494
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.66 E-value=0.033 Score=35.69 Aligned_cols=28 Identities=36% Similarity=0.305 Sum_probs=24.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9857870899954987518899999999
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAA 112 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~ 112 (479)
-=+.+|.++-|.|+.|+|||||+--++.
T Consensus 22 l~i~~Gei~~iiG~nGaGKSTLl~~i~G 49 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 8984997999999999999999999837
No 495
>KOG0739 consensus
Probab=96.65 E-value=0.029 Score=36.11 Aligned_cols=86 Identities=24% Similarity=0.354 Sum_probs=55.9
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHH
Q ss_conf 88886598578708999549875188999999999850398199998646304788887520157751000034788999
Q gi|254780334|r 79 LDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDI 158 (479)
Q Consensus 79 LDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~i 158 (479)
|-.++.|+-.|=+-+|+.|+||+|||-|+-.+|... + .-|+|.-- +.+. ..-||- +|.-+.++
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n--STFFSvSS--SDLv--SKWmGE--------SEkLVknL 217 (439)
T KOG0739 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N--STFFSVSS--SDLV--SKWMGE--------SEKLVKNL 217 (439)
T ss_pred CHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC---C--CCEEEEEH--HHHH--HHHHCC--------HHHHHHHH
T ss_conf 535415887754257886799975779999987414---7--70687301--7889--987321--------79999999
Q ss_pred HHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 999973169828997216876654
Q gi|254780334|r 159 IATLITNEKPDLVIIDSIQTLWSQ 182 (479)
Q Consensus 159 l~~~i~~~~~~~vVIDSIQtl~~~ 182 (479)
.+. .++.+|.+++||-|-.+...
T Consensus 218 Fem-ARe~kPSIIFiDEiDslcg~ 240 (439)
T KOG0739 218 FEM-ARENKPSIIFIDEIDSLCGS 240 (439)
T ss_pred HHH-HHHCCCCEEEEEHHHHHCCC
T ss_conf 999-87349947986344443268
No 496
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.65 E-value=0.0011 Score=46.36 Aligned_cols=191 Identities=17% Similarity=0.264 Sum_probs=102.3
Q ss_pred HHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC-CCCCCHH------
Q ss_conf 248888659-85787089995498751889999999998503981999986463047888875201-5775100------
Q gi|254780334|r 77 DELDRVTGG-GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLN-TINSSVY------ 148 (479)
Q Consensus 77 ~eLDrvLGG-Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~-~~~~~i~------ 148 (479)
.|+.+++.= .=..-...++.|+||+|||.++--+|..++...- +..++ ..|+- ++-..+.
T Consensus 185 ~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~V----------P~~L~--~~~I~~LDlg~L~AGakyR 252 (857)
T PRK10865 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV----------PEGLK--GRRVLALDMGALVAGAKYR 252 (857)
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCC----------CHHHC--CCCEEEEEHHHHHHCCCCC
T ss_conf 99999999970257899758789998899999999999983899----------97881--6902473388786147652
Q ss_pred EECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---CCC
Q ss_conf 00347889999999731698289972168766542044556367999999999997530797899986303665---433
Q gi|254780334|r 149 IAIETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEG---QIA 225 (479)
Q Consensus 149 ~~~e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G---~iA 225 (479)
---|..+..++..+....+.-+++||-|.|+.... +..|++ ..++-|+-..-.-.+-++ |--|-+. .|-
T Consensus 253 GeFEeRLk~il~ev~~~~~~iILFIDEiHtlvGaG--~~~G~~----DaaNlLKPaLaRGelr~I--GATT~~EYrk~iE 324 (857)
T PRK10865 253 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG--KADGAM----DAGNMLKPALARGELHCV--GATTLDEYRQYIE 324 (857)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC--CCCCCC----CHHHHHHHHHHCCCCEEE--EECCHHHHHHHCC
T ss_conf 11799999999999847898699973435433688--777753----478886788737985499--9458999998713
Q ss_pred CHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCCCC
Q ss_conf 11457877530278515556665442156763202567651279985156631101404555114766
Q gi|254780334|r 226 GPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDS 293 (479)
Q Consensus 226 Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~~~ 293 (479)
--..|+.-...|.--|. +......+||..|.+|-.-+.+- .++.-+....+-|.-|+.+|..
T Consensus 325 kD~AL~RRFq~V~V~EP---s~e~ti~ILrgl~~~yE~hH~V~---itdeAl~aAV~LS~RYI~dR~L 386 (857)
T PRK10865 325 KDAALERRFQKVFVAEP---SVEDTIAILRGLKERYELHHHVQ---ITDPAIVAAATLSHRYIADRQL 386 (857)
T ss_pred CCHHHHHHCCCCCCCCC---CHHHHHHHHHHHHHHHHHCCCCE---ECHHHHHHHHHHHHCCCCCCCC
T ss_conf 45889985371006899---87999999998888998737915---8799999999986245666678
No 497
>KOG0061 consensus
Probab=96.65 E-value=0.011 Score=39.19 Aligned_cols=171 Identities=22% Similarity=0.315 Sum_probs=90.0
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---CCCEEEEECCC-C------------------------------
Q ss_conf 5985787089995498751889999999998503---98199998646-3------------------------------
Q gi|254780334|r 84 GGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK---KHRITYVSGEE-A------------------------------ 129 (479)
Q Consensus 84 GGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~---g~~vlYvS~EE-s------------------------------ 129 (479)
.|=..||.++-|-|+.|+|||||+--++...... .+.+++ -++. .
T Consensus 50 sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilv-NG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~ 128 (613)
T KOG0061 50 SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL-NGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFS 128 (613)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEE-CCCCCCHHHHHHCCEEECCCCCCCCCCEEEEEEEEE
T ss_conf 7998678689997688877999999995778878876159998-982276455200034781334556654430234456
Q ss_pred ----------HHHHHHHHHH----CCCCCCCHHEEC----------CCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHC
Q ss_conf ----------0478888752----015775100003----------4788999999973169828997216876654204
Q gi|254780334|r 130 ----------IGQIRLRAQR----LNTINSSVYIAI----------ETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAE 185 (479)
Q Consensus 130 ----------~~Qi~~Ra~R----l~~~~~~i~~~~----------e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~ 185 (479)
.++...|.++ |++..-.--+.. |..--.+--++ -.+|.+++.|-. +..+|
T Consensus 129 A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El--l~~P~iLflDEP----TSGLD 202 (613)
T KOG0061 129 ALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL--LTDPSILFLDEP----TSGLD 202 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEECC----CCCCC
T ss_conf 899518877889999999999997275243140236777676460125566678888--439817997089----88855
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEE-CCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 45563679999999999975307978999863036654331145787753027851-55566654421567632025676
Q gi|254780334|r 186 SSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFE-GGTRNTQYDYRILRSVKNRFGPT 264 (479)
Q Consensus 186 s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~e-ge~~~~~~~~R~Lr~~KNRfG~t 264 (479)
+. ....+...|.++|++ |.+|++.=|=. +-.+=||-|-++.+. |+ .+ =+|+.
T Consensus 203 S~-----sA~~vv~~Lk~lA~~-grtVi~tIHQP-------ss~lf~lFD~l~lLs~G~---------~v-----y~G~~ 255 (613)
T KOG0061 203 SF-----SALQVVQLLKRLARS-GRTVICTIHQP-------SSELFELFDKLLLLSEGE---------VV-----YSGSP 255 (613)
T ss_pred HH-----HHHHHHHHHHHHHHC-CCEEEEEEECC-------CHHHHHHHHHHHHHHCCC---------EE-----EECCC
T ss_conf 57-----689999999999867-99899997687-------289999998999982897---------67-----86574
Q ss_pred CCEEEEEECCCCCE--EECCHHHHHHC
Q ss_conf 51279985156631--10140455511
Q gi|254780334|r 265 DEIGVFEMSDKGLQ--EVSDPSKIFLS 289 (479)
Q Consensus 265 ~e~gvf~m~~~Gl~--~v~~ps~~fl~ 289 (479)
.+.--| -.+-|.. +-.||++++++
T Consensus 256 ~~~~~f-f~~~G~~~P~~~Npadf~l~ 281 (613)
T KOG0061 256 RELLEF-FSSLGFPCPELENPADFLLD 281 (613)
T ss_pred CHHHHH-HHHCCCCCCCCCCCHHHHHH
T ss_conf 047899-98649999998881999999
No 498
>KOG0054 consensus
Probab=96.64 E-value=0.026 Score=36.36 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=34.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC------CCCEEEEECC
Q ss_conf 85787089995498751889999999998503------9819999864
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYK------KHRITYVSGE 127 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~------g~~vlYvS~E 127 (479)
=+.+|+++.|.|+.|+|||+|+..++.++.+- .+.+.|++-+
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~aYv~Q~ 590 (1381)
T KOG0054 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQ 590 (1381)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCC
T ss_conf 962898899989998888999999965875567559984748986665
No 499
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.012 Score=38.84 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=51.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCC
Q ss_conf 8708999549875188999999999850398--19999864630478888752015775100003478899999997316
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKH--RITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNE 166 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~--~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~ 166 (479)
+...+.|.|+.|.|||.|+..++....+.+. +++|++.|.-...... + ..+..++..-+. -
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~-a------------~~~~~~~~Fk~~---y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK-A------------LRDNEMEKFKEK---Y- 174 (408)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH-H------------HHHHHHHHHHHH---H-
T ss_conf 6895799879999789999999999986299864885048998999999-9------------885048888876---4-
Q ss_pred CCCEEEECHHHHHHH
Q ss_conf 982899721687665
Q gi|254780334|r 167 KPDLVIIDSIQTLWS 181 (479)
Q Consensus 167 ~~~~vVIDSIQtl~~ 181 (479)
..++++||-||.+..
T Consensus 175 ~~dlllIDDiq~l~g 189 (408)
T COG0593 175 SLDLLLIDDIQFLAG 189 (408)
T ss_pred CCCEEEECHHHHHCC
T ss_conf 267355513867567
No 500
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.63 E-value=0.02 Score=37.28 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 870899954987518899999999985
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLA 115 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a 115 (479)
.|++++|.|+-|.||||++-+++..+.
T Consensus 20 ~g~~~iItGpN~sGKSt~Lr~i~l~~~ 46 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 986899989987757999999999999
Done!