HHsearch alignment for GI: 254780334 and conserved domain: pfam00154

>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=99.88  E-value=1.4e-20  Score=169.80  Aligned_cols=231  Identities=20%  Similarity=0.326  Sum_probs=166.0

Q ss_pred             CCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf             656403133345566632378124888865-9857870899954987518899999999985039819999864630478
Q gi|254780334|r   55 SISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQI  133 (479)
Q Consensus        55 ~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi  133 (479)
T Consensus        16 ~~~i~~~~~~~~~~~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~d--   93 (322)
T pfam00154        16 KGSIMRLGDKTVEDVEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD--   93 (322)
T ss_pred             CCCEEECCCCCCCCCCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCC--
T ss_conf             874588888777775446158089999875899778708999889877789999999999973499389985366059--


Q ss_pred             HHHHHHCCCCCCCHHEECCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHH-HHCCCCCC--H-HHHHHHHH---HHHH
Q ss_conf             8887520157751000034788999---999973169828997216876654-20445563--6-79999999---9999
Q gi|254780334|r  134 RLRAQRLNTINSSVYIAIETNVEDI---IATLITNEKPDLVIIDSIQTLWSQ-TAESSPGT--V-IQVRTSVQ---AMIQ  203 (479)
Q Consensus       134 ~~Ra~Rl~~~~~~i~~~~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~-~~~s~~Gs--v-sQvre~~~---~L~~  203 (479)
T Consensus        94 ~~~a~~lGVD~~~l~~~qpd~~Eqal~i~~~li~~~~~~liViDSvaal~p~~E~e~~~~d~~~g~~Ar~ms~alRklt~  173 (322)
T pfam00154        94 PVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG  173 (322)
T ss_pred             HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             88999809880253897788399999999998537997659982534567688875243223213579999999999999


Q ss_pred             HHHHCCCEEEEEEEE-CCCCCC-------CCHHHHHHHHHEEEEEECC--CCCC----CCCCEEEEEEEECCCCCCCEEE
Q ss_conf             753079789998630-366543-------3114578775302785155--5666----5442156763202567651279
Q gi|254780334|r  204 YAKKNGVAMVLVGHV-TKEGQI-------AGPRVIEHMVDAVLYFEGG--TRNT----QYDYRILRSVKNRFGPTDEIGV  269 (479)
Q Consensus       204 ~AK~~~i~vilighv-TK~G~i-------AGp~~LeH~VD~vl~~ege--~~~~----~~~~R~Lr~~KNRfG~t~e~gv  269 (479)
T Consensus       174 ~l~k~~~~~IfiNQ~R~kiG~mfg~pe~t~GG~Alkf~aSvri~l~k~~~iK~g~~~vG~~i~-~kvvKnK~a~P~~~ae  252 (322)
T pfam00154       174 NISKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGEEVIGNRTK-VKVVKNKVAPPFKQAE  252 (322)
T ss_pred             HHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCHHHCCEEEEEEEEEECCCCCCCCCEEEEEE-EEEEECCCCCCCCEEE
T ss_conf             973058549997655111466469985477864254110037877650101467863369999-9998367489986799


Q ss_pred             EEEC-CCCCEEECCHHHHHH
Q ss_conf             9851-566311014045551
Q gi|254780334|r  270 FEMS-DKGLQEVSDPSKIFL  288 (479)
Q Consensus       270 f~m~-~~Gl~~v~~ps~~fl  288 (479)
T Consensus       253 ~~i~y~~GId~~~~lldla~  272 (322)
T pfam00154       253 FDIMYGEGISKEGELIDLGV  272 (322)
T ss_pred             EEEECCCCCCCHHHHHHHHH
T ss_conf             99615887664325999999