HHsearch alignment for GI: 254780334 and conserved domain: pfam00437
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.86 E-value=0.0023 Score=44.13 Aligned_cols=91 Identities=20% Similarity=0.340 Sum_probs=56.5
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEE---CCC
Q ss_conf 24888865985787089995498751889999999998503981999986463047888875201577510000---347
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIA---IET 153 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~---~e~ 153 (479)
T Consensus 126 ~~~~~~L~~~v~~~~~ilIsG~TGSGKTT~l~all~~i~~~~~r--iitiED~~El~l~-----~~--~~v~l~~~~~~~ 196 (283)
T pfam00437 126 ADIAEFLRQAVQARGNILVSGGTGSGKTTLLYALLNEINTDDER--IVTIEDPVEIQLE-----GP--NQVQLNTRLAGV 196 (283)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC--EEEECCCCEECCC-----CC--CEEEEEECCCCC
T ss_conf 99999999999819759998899998899999999840877762--7873378523179-----88--789998558876
Q ss_pred CHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 889999999731698289972168
Q gi|254780334|r 154 NVEDIIATLITNEKPDLVIIDSIQ 177 (479)
Q Consensus 154 ~l~~il~~~i~~~~~~~vVIDSIQ 177 (479)
T Consensus 197 t~~~ll~~~L-R~~PD~IivGEiR 219 (283)
T pfam00437 197 TFADLLRAAL-RQRPDRIMVGEIR 219 (283)
T ss_pred CHHHHHHHHH-CCCCCEEEECCCC
T ss_conf 9999999963-8899989757869