HHsearch alignment for GI: 254780334 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.

Probab=98.35  E-value=1.6e-05  Score=59.79  Aligned_cols=84  Identities=26%  Similarity=0.356  Sum_probs=63.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHH---
Q ss_conf             08999549875188999999999850398199998646----30478888752015775100003478899999997---
Q gi|254780334|r   91 SVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLI---  163 (479)
Q Consensus        91 s~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i---  163 (479)
T Consensus         2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~--~~~~~d~~~~~~~~l~~~   79 (196)
T pfam00448         2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFG--SGTGSDPAAVAFDAVEKA   79 (196)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHHHH
T ss_conf             699998999998899999999999977992899975877688999999999863981781--487778789999999998


Q ss_pred             HCCCCCEEEECHH
Q ss_conf             3169828997216
Q gi|254780334|r  164 TNEKPDLVIIDSI  176 (479)
Q Consensus       164 ~~~~~~~vVIDSI  176 (479)
T Consensus        80 ~~~~~D~IlIDTa   92 (196)
T pfam00448        80 KAENYDVVLVDTA   92 (196)
T ss_pred             HHCCCCEEEEECC
T ss_conf             8468999999899