HHsearch alignment for GI: 254780334 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.87 E-value=4.3e-21 Score=173.42 Aligned_cols=150 Identities=19% Similarity=0.341 Sum_probs=116.8
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHH--CCCC-----
Q ss_conf 23781248888659857870899954987518899999999985-039819999864630478888752--0157-----
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQR--LNTI----- 143 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~R--l~~~----- 143 (479)
T Consensus 2 IpTG~~~lD~~~-gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~~~~~R~~a~~~~v~~~~i~ 80 (186)
T pfam03796 2 LPTGFTDLDQLT-GGLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAEQLAERLLSSESRISSSKLR 80 (186)
T ss_pred CCCCCHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 388807788642-6988881799996799987999999999999970996687547552999999999986267655541
Q ss_pred --------------------CCCHHEEC--CCCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf --------------------75100003--47889999---999731698289972168766542044556367999999
Q gi|254780334|r 144 --------------------NSSVYIAI--ETNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSV 198 (479)
Q Consensus 144 --------------------~~~i~~~~--e~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~ 198 (479)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~~~~~~~r~~~v~~i~ 160 (186)
T pfam03796 81 SGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSKASKSENRQQEISEIS 160 (186)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 25121679999999999985398688479999899999999999985599889974898636778887755999999999
Q ss_pred HHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 999997530797899986303665
Q gi|254780334|r 199 QAMIQYAKKNGVAMVLVGHVTKEG 222 (479)
Q Consensus 199 ~~L~~~AK~~~i~vilighvTK~G 222 (479)
T Consensus 161 ~~Lk~lA~e~~i~ii~~sQlNR~~ 184 (186)
T pfam03796 161 RSLKALAKELNIPVIALSQLSRAV 184 (186)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 999999999799189972257533