HHsearch alignment for GI: 254780334 and conserved domain: pfam05625
>pfam05625 PAXNEB PAXNEB protein. PAXNEB or PAX6 neighbour is found in several eukaryotic organisms. PAXNED is an RNA polymerase II Elongator protein subunit. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The HAP subcomplex is required for Elongator structural integrity and histone acetyltransferase activity. This protein family has a P-loop motif. However its sequence has degraded in many members of the family.
Probab=97.98 E-value=0.00065 Score=48.10 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=47.1
Q ss_pred CCCCCCCCCHHHHHHHCC--CCCCCCEEEEECCCCCCHHHHHH-HHHHHHHCCCCCEEEEECC
Q ss_conf 666323781248888659--85787089995498751889999-9999985039819999864
Q gi|254780334|r 68 EESRIQTHIDELDRVTGG--GFVRGSVILVGGDPGIGKSTLLM-QTAASLAYKKHRITYVSGE 127 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGG--Gl~~Gs~~Li~G~PGvGKSTL~L-qia~~~a~~g~~vlYvS~E 127 (479)
T Consensus 22 ~q~~tSTG~~sLD~iLgGh~GlPlGs~lLIEEd~~~~ya~~LlkyF~AEGvv~~h~v~v~s~p 84 (353)
T pfam05625 22 GQPTTSTGTPSLDKILGGHGGLPLGSSLLIEEDGTTDFASVLLRYFAAEGVVQNHHVFVASLP 84 (353)
T ss_pred CCEEEECCCCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 987673287217877178877654537999745877279999999987200358769996688