HHsearch alignment for GI: 254780334 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=96.95 E-value=0.0023 Score=44.14 Aligned_cols=36 Identities=28% Similarity=0.567 Sum_probs=31.0
Q ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 865985787089995498751889999999998503
Q gi|254780334|r 82 VTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK 117 (479)
Q Consensus 82 vLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~ 117 (479)
T Consensus 42 mIk~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~ 77 (395)
T pfam06068 42 MIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGED 77 (395)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 997277577389987799988899999999974879