HHsearch alignment for GI: 254780334 and conserved domain: pfam06745

>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=99.97  E-value=9.9e-30  Score=236.44  Aligned_cols=202  Identities=27%  Similarity=0.330  Sum_probs=159.2

Q ss_pred             CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHCCCCCCC----
Q ss_conf             23781248888659857870899954987518899999999985-0398199998646304788887520157751----
Q gi|254780334|r   72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQRLNTINSS----  146 (479)
Q Consensus        72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~----  146 (479)
T Consensus         1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~   80 (231)
T pfam06745         1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEEE   80 (231)
T ss_pred             CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHC
T ss_conf             98895568863169982996999985897259999999999999865896899981379999999999829985898646


Q ss_pred             --HHEE-------------CCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             --0000-------------34788999---99997316982899721687665420445563679999999999975307
Q gi|254780334|r  147 --VYIA-------------IETNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKN  208 (479)
Q Consensus       147 --i~~~-------------~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~  208 (479)
T Consensus        81 g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~------~~~~~~r~~l~~l~~~lk~~  154 (231)
T pfam06745        81 GKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYL------LKPAMAREILRRLKRVLKKL  154 (231)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHC------CCHHHHHHHHHHHHHHHHHC
T ss_conf             967898625442221001122799999999999999719988999764164005------88999999999999999976


Q ss_pred             CCEEEEEEEECCC-CCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEE--EEECCCCCEEEC
Q ss_conf             9789998630366-543311457877530278515556665442156763202567651279--985156631101
Q gi|254780334|r  209 GVAMVLVGHVTKE-GQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGV--FEMSDKGLQEVS  281 (479)
Q Consensus       209 ~i~vilighvTK~-G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv--f~m~~~Gl~~v~  281 (479)
T Consensus       155 g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~-~~~~~R~l~I~K~R-g~~~~~~~~~f~It~~Gi~i~p  228 (231)
T pfam06745       155 GVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEI-EGELVRTIEIVKMR-GTPHSMKRYPFEITDNGIVVYP  228 (231)
T ss_pred             CCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECC-CCEEEEEEEEEECC-CCCCCCCEEEEEEECCCEEEEC
T ss_conf             99199998212577765676301110036999998824-99899999999866-9987894799999089879908