HHsearch alignment for GI: 254780334 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=99.97 E-value=9.9e-30 Score=236.44 Aligned_cols=202 Identities=27% Similarity=0.330 Sum_probs=159.2
Q ss_pred CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHCCCCCCC----
Q ss_conf 23781248888659857870899954987518899999999985-0398199998646304788887520157751----
Q gi|254780334|r 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQRLNTINSS---- 146 (479)
Q Consensus 72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~---- 146 (479)
T Consensus 1 i~TGi~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~ 80 (231)
T pfam06745 1 VKTGIPGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEEE 80 (231)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHC
T ss_conf 98895568863169982996999985897259999999999999865896899981379999999999829985898646
Q ss_pred --HHEE-------------CCCCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf --0000-------------34788999---99997316982899721687665420445563679999999999975307
Q gi|254780334|r 147 --VYIA-------------IETNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKN 208 (479)
Q Consensus 147 --i~~~-------------~e~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~ 208 (479)
T Consensus 81 g~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~------~~~~~~r~~l~~l~~~lk~~ 154 (231)
T pfam06745 81 GKLAIIDASTSGIGIAEVKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYL------LKPAMAREILRRLKRVLKKL 154 (231)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHC------CCHHHHHHHHHHHHHHHHHC
T ss_conf 967898625442221001122799999999999999719988999764164005------88999999999999999976
Q ss_pred CCEEEEEEEECCC-CCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEE--EEECCCCCEEEC
Q ss_conf 9789998630366-543311457877530278515556665442156763202567651279--985156631101
Q gi|254780334|r 209 GVAMVLVGHVTKE-GQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGV--FEMSDKGLQEVS 281 (479)
Q Consensus 209 ~i~vilighvTK~-G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv--f~m~~~Gl~~v~ 281 (479)
T Consensus 155 g~t~l~t~e~~~~~~~~~~~~~~~~l~D~vI~L~~~~~-~~~~~R~l~I~K~R-g~~~~~~~~~f~It~~Gi~i~p 228 (231)
T pfam06745 155 GVTAIFTSEKPSGEGGIGGYGVEEFVVDGVIRLDLKEI-EGELVRTIEIVKMR-GTPHSMKRYPFEITDNGIVVYP 228 (231)
T ss_pred CCEEEEEEEECCCCCCCCCCCHHHHEEEEEEEEEEECC-CCEEEEEEEEEECC-CCCCCCCEEEEEEECCCEEEEC
T ss_conf 99199998212577765676301110036999998824-99899999999866-9987894799999089879908