BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] (479 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/479 (100%), Positives = 479/479 (100%) Query: 1 MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFM 60 MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFM Sbjct: 1 MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLFM 60 Query: 61 LSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHR 120 LSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHR Sbjct: 61 LSEESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHR 120 Query: 121 ITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLW 180 ITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLW Sbjct: 121 ITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKPDLVIIDSIQTLW 180 Query: 181 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF 240 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF Sbjct: 181 SQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYF 240 Query: 241 EGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAV 300 EGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAV Sbjct: 241 EGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAV 300 Query: 301 FAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHL 360 FAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHL Sbjct: 301 FAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHL 360 Query: 361 NIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAE 420 NIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAE Sbjct: 361 NIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGHMQQRLKEAE 420 Query: 421 KIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITALQKKDKKTVHKTRSLNSPWE 479 KIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITALQKKDKKTVHKTRSLNSPWE Sbjct: 421 KIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITALQKKDKKTVHKTRSLNSPWE 479 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 43.1 bits (100), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 353 FGNHDVHLNIAGGYRISE-PAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGH 411 F ++H+++ G + P+A +A+A A++S + IP+ + GE++L G V +G Sbjct: 675 FNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGG 734 Query: 412 MQQRLKEAEKIGFLSGVFPE 431 ++++L A + G + PE Sbjct: 735 LKEKLLAALRAGVTKVLIPE 754 >gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 E I+ + +D + GG +R +IL+G P +GK+T + TA +A H + + S E Sbjct: 121 ENPDIKWGLQSVDHLMGGVQLR-ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 >gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%) Query: 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTIN 144 GGF +G ++ + G GK+TL + T A +V E A+ I A++L Sbjct: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119 Query: 145 SSVYIAIETNVE---DIIATLITNEKPDLVIIDSIQTLWSQT------AESSPGTVIQVR 195 ++ I+ E +I L+ + D+++IDS+ L + ES PG +Q R Sbjct: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQAR 177 Query: 196 TSVQAM 201 QA+ Sbjct: 178 LMSQAL 183 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 32.3 bits (72), Expect = 0.019, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA 115 + T I LD+ GG R +I++ G PG+GK++L A ++A Sbjct: 202 VSTGIQTLDKQMGG-LQRSDLIIIAGRPGMGKTSLATNIAYNVA 244 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 31.2 bits (69), Expect = 0.036, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%) Query: 162 LITNEKPDLVIIDSI-------QTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVL 214 L T +KPD+ ID + Q S S+ GT+ ++ ++ + A + Sbjct: 68 LGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLF--------ARIG 119 Query: 215 VGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSD 274 + H G + I M D +L FE GTR Y + V+NR G + + E+ Sbjct: 120 IPHSPTTGLPIESQTISQMADRLLSFEQGTRM----YLLAPIVRNRKGEYKK-ELAEILK 174 Query: 275 KGLQEV 280 KG Q V Sbjct: 175 KGFQRV 180 >gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 628 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 284 SKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGM 325 S +F+ D T P +V + +EG R + E+ + ++ +LG+ Sbjct: 118 SALFIGDSMVT-PALSVLSAVEGVRYIAPELDNFIILIALGI 158 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Query: 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE----EAIGQIRLRAQR 139 R VILV G G+GK+T++ + + ++ ++ +G+ AI Q+++ A R Sbjct: 110 RPHVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQLKIWADR 164 >gi|254780927|ref|YP_003065340.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 430 Score = 24.3 bits (51), Expect = 5.2, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 100 GIGKSTLLMQTAASLAYKKHRI 121 G+G ST+ +Q SL+ +HRI Sbjct: 219 GMGSSTITIQGVTSLSGTRHRI 240 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 23.9 bits (50), Expect = 6.0, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 88 VRGSVILVGGDPGIGKS-TLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQR 139 + G +++ G PG GKS T+ AA++ + K + AI +R R ++ Sbjct: 417 INGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEK 469 >537021.9.peg.1064_1 Length = 238 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 29 AWNTIIEDSSRKESDQRFSKTIK 51 AWN I++++RK D R + +K Sbjct: 188 AWNRAIDETNRKLHDVRLAAMLK 210 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 88 VRGSVILVGGDPGIGKSTLL 107 +RG +++ G G GKSTL+ Sbjct: 41 LRGERVIIAGPSGSGKSTLI 60 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Query: 93 ILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIE 152 I + G P +GKSTL + K ++ V I + RL Q + IN ++ ++ Sbjct: 5 IAIVGAPNVGKSTLFNRLV------KKKMAVVGNHPGITRDRLYGQAI--INGVIFNIVD 56 Query: 153 T 153 T Sbjct: 57 T 57 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.133 0.378 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,586 Number of Sequences: 1233 Number of extensions: 11237 Number of successful extensions: 63 Number of sequences better than 100.0: 21 Number of HSP's better than 100.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 24 length of query: 479 length of database: 328,796 effective HSP length: 77 effective length of query: 402 effective length of database: 233,855 effective search space: 94009710 effective search space used: 94009710 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)