HHsearch alignment for GI: 254780335 and conserved domain: COG1286
>COG1286 CvpA Uncharacterized membrane protein, required for colicin V production [General function prediction only].
Probab=99.97 E-value=1.5e-29 Score=177.74 Aligned_cols=153 Identities=28% Similarity=0.432 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00999999999999999999988999999999999999999999999999998403988999999999999999999999
Q gi|254780335|r 3 ITYFDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLFLIILTVVSI 82 (156)
Q Consensus 3 m~~~D~~i~~ii~~~~~~G~~rG~i~e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~~i~~~~ 82 (156)
T Consensus 1 ~~~iD~iil~ii~~~~~~g~~RGfi~e~~sl~s~i~a~~vA~~fy~~~~~~~~~~i~~~~~~~~~~~~~~f~~~l~v~~~ 80 (182)
T COG1286 1 ITMLDLIILIIIVASFLLGLRRGFIREVLSLLSWILAAFVASLFYKPLAPLLREYIPYPNIAIGIAIAIFFVILLIVGAF 80 (182)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 92389999999999999999989999999999999999999998799999999986982577874899999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999998522-2344899999999999999999999999742945243899997999999999999999619
Q gi|254780335|r 83 LLKIMSTPIRIRS-VLLDKILGCAFGGVRGLFLLIITTSCWNLIVHESREPAWIQKSISKKALDRMGTRLQSIVQ 156 (156)
Q Consensus 83 i~~~l~~~i~~~~-~~~Dr~lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~~~~~~S~~~~~l~~~~~~l~~~l~ 156 (156)
T Consensus 81 i~~~i~~~i~~~~l~~~dR~LG~~fG~~~g~lil~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~ 154 (182)
T COG1286 81 VNSLIAFLIIFSGLGFIDRILGFLFGALRGVLILAIVLFFLAGITGFKDTPDW-LQSSLYPLLLPPIEALQNYLP 154 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999826599999999999999969999999999852242104999-999979988725899998832