Query         gi|254780335|ref|YP_003064748.1| colicin V production protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 156
No_of_seqs    111 out of 673
Neff          7.1 
Searched_HMMs 39220
Date          Sun May 29 14:47:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780335.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10845 colicin V production  100.0 1.3E-38 3.3E-43  226.8  21.6  152    3-156     1-153 (162)
  2 COG1286 CvpA Uncharacterized m 100.0 1.5E-29 3.8E-34  177.7  21.4  153    3-156     1-154 (182)
  3 pfam02674 Colicin_V Colicin V  100.0 3.5E-29 8.9E-34  175.8  18.2  143    6-148     1-144 (145)
  4 pfam02674 Colicin_V Colicin V   97.1   0.013 3.4E-07   32.0  13.9  123   12-134     3-126 (145)
  5 PRK10323 neutral amino-acid ef  67.7     7.4 0.00019   17.2   9.3   22   19-40     29-50  (195)
  6 COG3775 GatC Phosphotransferas  64.2     7.5 0.00019   17.1   3.1  124   29-154   145-283 (446)
  7 PRK09796 cellobiose/arbutin/sa  53.4      14 0.00035   15.8  10.8   83   37-119   221-310 (472)
  8 TIGR00942 2a6301s05 multicompo  51.8      15 0.00037   15.6   3.2   57   33-89     14-72  (149)
  9 PRK09824 beta-glucoside-specif  41.2      22 0.00055   14.7  10.3   92   35-126   215-309 (625)
 10 COG4956 Integral membrane prot  39.7      23 0.00058   14.5  11.6   81   36-116    11-100 (356)
 11 pfam06570 DUF1129 Protein of u  39.4      23 0.00059   14.5  10.8  110    3-113    78-197 (206)
 12 KOG2322 consensus               37.0      25 0.00065   14.3   6.4   55   18-76     39-97  (237)
 13 TIGR01995 PTS-II-ABC-beta PTS   31.4      32  0.0008   13.8   8.4  115   37-151   237-363 (660)
 14 COG1968 BacA Undecaprenyl pyro  28.8      35  0.0009   13.5  10.7   18   22-39    178-195 (270)
 15 pfam02673 BacA Bacitracin resi  28.2      36 0.00092   13.5   9.4   71    4-77     38-122 (255)
 16 COG1263 PtsG Phosphotransferas  27.5      37 0.00095   13.4   8.9   97   29-125   125-228 (393)
 17 KOG4112 consensus               27.4      37 0.00095   13.4   4.6   27   12-38     30-56  (101)
 18 PRK10520 rhtB homoserine/homos  24.2      43  0.0011   13.1   9.4   20   29-48     70-89  (205)
 19 pfam07290 DUF1449 Protein of u  22.0      48  0.0012   12.8   6.5   15   77-91     73-87  (202)
 20 TIGR00926 2A1704 Oligopeptide   21.7      48  0.0012   12.8   5.2  125   26-150   108-238 (781)
 21 PRK12554 undecaprenyl pyrophos  21.0      50  0.0013   12.7   9.0   26   37-62     93-118 (277)

No 1  
>PRK10845 colicin V production protein; Provisional
Probab=100.00  E-value=1.3e-38  Score=226.76  Aligned_cols=152  Identities=20%  Similarity=0.298  Sum_probs=140.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00999999999999999999988999999999999999999999999999998403988999999999999999999999
Q gi|254780335|r    3 ITYFDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLFLIILTVVSI   82 (156)
Q Consensus         3 m~~~D~~i~~ii~~~~~~G~~rG~i~e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~~i~~~~   82 (156)
                      ||++|+++++++.+|++.|++|||+||++|+++|+.|+++|+++++.+++++.++ +++..++.++|+++|+.+++++++
T Consensus         1 M~~~D~~ii~ii~~S~l~gl~RGfvrE~lSL~~Wv~A~~~A~~~~~~l~~~l~~~-~~~~~r~~~af~~lFv~~liv~~l   79 (162)
T PRK10845          1 MVWIDYAIIAVIAFSALVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGF-EDELVRNGIAIAVLFIATLIVGAI   79 (162)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9499999999999999999999999999999999999999999878899987205-877999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999998522-2344899999999999999999999999742945243899997999999999999999619
Q gi|254780335|r   83 LLKIMSTPIRIRS-VLLDKILGCAFGGVRGLFLLIITTSCWNLIVHESREPAWIQKSISKKALDRMGTRLQSIVQ  156 (156)
Q Consensus        83 i~~~l~~~i~~~~-~~~Dr~lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~~~~~~S~~~~~l~~~~~~l~~~l~  156 (156)
                      +++.+++.++.++ ++.||.+|+.||.+||.+++++++...+...+.. +++|||||++.|+++...+|..++++
T Consensus        80 i~~~l~~~v~~sgLg~~DR~LG~~FG~~RG~lIv~v~~~~l~~~t~~~-~~~~w~~S~l~P~f~~~~~w~~~~Lp  153 (162)
T PRK10845         80 VNFVIGQLVEKTGLSGTDRVLGVCFGALRGVLIVAAILFFLDTFTGVS-KSEDWSKSQLIPQFSFIIRWFFDYLQ  153 (162)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHCHHHHHHHHHHHHHHHHCC
T ss_conf             999999999996888188999999999999999999999996458998-78699855058839999999998765


No 2  
>COG1286 CvpA Uncharacterized membrane protein, required for colicin V production [General function prediction only]
Probab=99.97  E-value=1.5e-29  Score=177.74  Aligned_cols=153  Identities=28%  Similarity=0.432  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00999999999999999999988999999999999999999999999999998403988999999999999999999999
Q gi|254780335|r    3 ITYFDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLFLIILTVVSI   82 (156)
Q Consensus         3 m~~~D~~i~~ii~~~~~~G~~rG~i~e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~~i~~~~   82 (156)
                      ||++|+++++++.++.+.|+.|||+||+.|++||++|+++|+.+|++++|++.++++++..+...+....|...++.+..
T Consensus         1 ~~~iD~iil~ii~~~~~~g~~RGfi~e~~sl~s~i~a~~vA~~fy~~~~~~~~~~i~~~~~~~~~~~~~~f~~~l~v~~~   80 (182)
T COG1286           1 ITMLDLIILIIIVASFLLGLRRGFIREVLSLLSWILAAFVASLFYKPLAPLLREYIPYPNIAIGIAIAIFFVILLIVGAF   80 (182)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             92389999999999999999989999999999999999999998799999999986982577874899999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999998522-2344899999999999999999999999742945243899997999999999999999619
Q gi|254780335|r   83 LLKIMSTPIRIRS-VLLDKILGCAFGGVRGLFLLIITTSCWNLIVHESREPAWIQKSISKKALDRMGTRLQSIVQ  156 (156)
Q Consensus        83 i~~~l~~~i~~~~-~~~Dr~lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~~~~~~S~~~~~l~~~~~~l~~~l~  156 (156)
                      +...++..+...+ +.+||.+|+.||.+||.+++.......+...+.+++|+| .+|+++|+.+...+++++.+|
T Consensus        81 i~~~i~~~i~~~~l~~~dR~LG~~fG~~~g~lil~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~  154 (182)
T COG1286          81 VNSLIAFLIIFSGLGFIDRILGFLFGALRGVLILAIVLFFLAGITGFKDTPDW-LQSSLYPLLLPPIEALQNYLP  154 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999826599999999999999969999999999852242104999-999979988725899998832


No 3  
>pfam02674 Colicin_V Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.
Probab=99.97  E-value=3.5e-29  Score=175.76  Aligned_cols=143  Identities=27%  Similarity=0.502  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999988999999999999999999999999999998403988999999999999999999999999
Q gi|254780335|r    6 FDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLFLIILTVVSILLK   85 (156)
Q Consensus         6 ~D~~i~~ii~~~~~~G~~rG~i~e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~~i~~~~i~~   85 (156)
                      +|+++++++.++.+.|++||+++|++|+++|+.|.++|.+++++++++++++++++...++++|+++|++++++++++++
T Consensus         1 lD~iii~il~~~~~~G~~rG~i~e~~~l~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~iifi~~~~i~~~i~~   80 (145)
T pfam02674         1 LDIIILLILLLSALLGFRRGFVREVLSLLGWVVAFFVASLFYPPLAPLLAEYVLSPALAAIIAFLLIFLLVLLIGSLLGV   80 (145)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             90099999999999999999999999999999999999999999999988437978999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999998522-23448999999999999999999999997429452438999979999999999
Q gi|254780335|r   86 IMSTPIRIRS-VLLDKILGCAFGGVRGLFLLIITTSCWNLIVHESREPAWIQKSISKKALDRMG  148 (156)
Q Consensus        86 ~l~~~i~~~~-~~~Dr~lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~~~~~~S~~~~~l~~~~  148 (156)
                      .+++..+.+. +..||.+|+++|..||++++.++....+..+.++..|+|++||+.+|+++...
T Consensus        81 ~l~~~~~~~~l~~~dr~lG~~~G~~k~~li~~~~~~~~~~~~~~~~~~~~~~~S~~~~~i~~~~  144 (145)
T pfam02674        81 LLRKLVKLSGLGGLDRLLGAVFGLLRGLLILSVLLFLLALFPLPGVPQEWLRNSRLAPLLENAA  144 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHC
T ss_conf             9999998805343899999999999999999999999997689877457998644498777429


No 4  
>pfam02674 Colicin_V Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.
Probab=97.12  E-value=0.013  Score=32.01  Aligned_cols=123  Identities=13%  Similarity=0.132  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999988999999999999999999999999999998403988999999999999999999999999999999
Q gi|254780335|r   12 GFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLFLIILTVVSILLKIMSTPI   91 (156)
Q Consensus        12 ~ii~~~~~~G~~rG~i~e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~~i~~~~i~~~l~~~i   91 (156)
                      .++..-...+..+|+-|-...-+.=+.+..++...+...+|.+.++.++.......+..+.|+.+++++.++.+.+.+.+
T Consensus         3 ~iii~il~~~~~~G~~rG~i~e~~~l~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~iifi~~~~i~~~i~~~l   82 (145)
T pfam02674         3 IIILLILLLSALLGFRRGFVREVLSLLGWVVAFFVASLFYPPLAPLLAEYVLSPALAAIIAFLLIFLLVLLIGSLLGVLL   82 (145)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             09999999999999999999999999999999999999999999998843797899999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             85222-34489999999999999999999999974294524389
Q gi|254780335|r   92 RIRSV-LLDKILGCAFGGVRGLFLLIITTSCWNLIVHESREPAW  134 (156)
Q Consensus        92 ~~~~~-~~Dr~lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~~~  134 (156)
                      +.... ...+..--.+|++=|.+-..++..+..........|.+
T Consensus        83 ~~~~~~~~l~~~dr~lG~~~G~~k~~li~~~~~~~~~~~~~~~~  126 (145)
T pfam02674        83 RKLVKLSGLGGLDRLLGAVFGLLRGLLILSVLLFLLALFPLPGV  126 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99998805343899999999999999999999999997689877


No 5  
>PRK10323 neutral amino-acid efflux protein; Provisional
Probab=67.68  E-value=7.4  Score=17.18  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999988999999999999999
Q gi|254780335|r   19 MLAMARGIFSEMISLTNWIVAA   40 (156)
Q Consensus        19 ~~G~~rG~i~e~~sl~~wi~a~   40 (156)
                      -.|...|+-|.+--+.|...++
T Consensus        29 ~~g~~~G~r~tlp~~~Gi~~G~   50 (195)
T PRK10323         29 SSATSHGFRQSTRVLAGMSLGF   50 (195)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHH
T ss_conf             9998568999999998898999


No 6  
>COG3775 GatC Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]
Probab=64.22  E-value=7.5  Score=17.15  Aligned_cols=124  Identities=15%  Similarity=0.123  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHH------HHHHHHHH--
Q ss_conf             999999999999999999999999998403988999999999999-999999999999--9999------99852223--
Q gi|254780335|r   29 EMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLF-LIILTVVSILLK--IMST------PIRIRSVL--   97 (156)
Q Consensus        29 e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iF-i~~~i~~~~i~~--~l~~------~i~~~~~~--   97 (156)
                      -..++++-+....+..+..+..+|..+|+.+-|..+.--+.-.-+ ...+.+-.++.+  .++|      .++.+.|.  
T Consensus       145 ~~~a~l~avi~~v~~lk~aDw~~p~v~d~~gl~gis~ptgs~~~~~pi~~~~dkii~KiPgl~k~~~Da~~iqkk~G~fG  224 (446)
T COG3775         145 LIIALLAAVIHAVLVLKLADWTAPDVQDLFGLEGISIPTGSSANYMPIGMLLDKIIEKIPGLNKIDFDAETIQKKFGIFG  224 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             99999999999999987320023458986099997877656201100565299899768586446899999986625766


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----448999999999999999999999997429452438999979999999999999996
Q gi|254780335|r   98 ----LDKILGCAFGGVRGLFLLIITTSCWNLIVHESREPAWIQKSISKKALDRMGTRLQSI  154 (156)
Q Consensus        98 ----~Dr~lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~~~~~~S~~~~~l~~~~~~l~~~  154 (156)
                          .--++|..+|.+-|+=+-.++-+.+.....-.-.|.-  -|....-+++.+|..+++
T Consensus       225 ep~~iG~ilG~~iGilagy~~~~vl~Lg~~~aavm~L~prm--vk~lmegL~PlSe~a~~f  283 (446)
T COG3775         225 EPMFIGFILGLLIGILAGYDVKKVLQLGMTAAAVMVLFPRM--VKILMEGLTPLSEGARKF  283 (446)
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHHH
T ss_conf             62499999999999971898999999998999999999999--999996236066899999


No 7  
>PRK09796 cellobiose/arbutin/salicin-specific PTS system components IIBC; Provisional
Probab=53.45  E-value=14  Score=15.75  Aligned_cols=83  Identities=6%  Similarity=0.126  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q ss_conf             999999999999999999840398---8999999999999999999999999999999852223448----999999999
Q gi|254780335|r   37 IVAAIMTRYLYPMLLERVSEFFKS---KQVAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDK----ILGCAFGGV  109 (156)
Q Consensus        37 i~a~~~a~~~~~~l~~~l~~~~~~---~~~~~i~a~~~iFi~~~i~~~~i~~~l~~~i~~~~~~~Dr----~lG~~fG~~  109 (156)
                      ++...++-+...++..++++++++   ......++..+....++++..=++..++..+..-...+..    +.|+++|+.
T Consensus       221 ViPiil~v~~~s~ier~l~K~iP~~l~~i~~P~ltlli~~~l~l~viGPig~~i~~~i~~~v~~l~~~~~~i~g~i~g~~  300 (472)
T PRK09796        221 VIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGAL  300 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             69999999999999999997481998998998999999999999999889999999999999999860539999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780335|r  110 RGLFLLIITT  119 (156)
Q Consensus       110 rg~li~~i~~  119 (156)
                      .-.+++.=.+
T Consensus       301 ~~~lV~tGlH  310 (472)
T PRK09796        301 WPLLVMTGMH  310 (472)
T ss_pred             HHHHHHHHHH
T ss_conf             9999998335


No 8  
>TIGR00942 2a6301s05 multicomponent Na+:H+ antiporter; InterPro: IPR004847   This family represents mnhE, one of the seven ORFs of the mnh operon of Staphylococcus aureus. The seven open reading frames (ORFs) are necessary for Na^+/H^+ antiporter function as demonstrated by functional complementation in Escherichia coli and detection of Na^+/H^+ antiport activity in membrane vesicles prepared from E. coli cells expressing the mnh operon components .    In Rhizobium meliloti the phaE gene is part of a novel gene cluster required for the adaptation to alkaline pH in the presence of K^+ and is therefore a predicted K^+/H^+ antiporter that regulates internal pH, and which is required for the adaptation to the altered environment inside the plant .  .
Probab=51.78  E-value=15  Score=15.60  Aligned_cols=57  Identities=23%  Similarity=0.339  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_conf             999999999999999999999984039889999999999999999999999--999999
Q gi|254780335|r   33 LTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLFLIILTVVSIL--LKIMST   89 (156)
Q Consensus        33 l~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~~i~~~~i--~~~l~~   89 (156)
                      .+|.+.|..+|+..++.+...=-.......++.++.|++.|+.-++=..+-  -++++.
T Consensus        14 vlG~ifs~vla~~t~~~~p~RGlsn~~~~r~~rii~~i~~fl~~~IkaN~dV~~iil~p   72 (149)
T TIGR00942        14 VLGLIFSLVLAYLTYDVLPARGLSNLRLRRLARIIKFILIFLIELIKANLDVLLIILKP   72 (149)
T ss_pred             EHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             20556899999999730355651133499999999999999999998549999998456


No 9  
>PRK09824 beta-glucoside-specific PTS system components IIABC; Provisional
Probab=41.20  E-value=22  Score=14.67  Aligned_cols=92  Identities=16%  Similarity=0.213  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999998403988---99999999999999999999999999999985222344899999999999
Q gi|254780335|r   35 NWIVAAIMTRYLYPMLLERVSEFFKSK---QVAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGCAFGGVRG  111 (156)
Q Consensus        35 ~wi~a~~~a~~~~~~l~~~l~~~~~~~---~~~~i~a~~~iFi~~~i~~~~i~~~l~~~i~~~~~~~Dr~lG~~fG~~rg  111 (156)
                      +=++-..++-+...++..++++++++.   .....++..+....++++..=++..++..+......+....|.+.|.+=|
T Consensus       215 ~sViPiIl~v~~~s~vEk~l~K~iP~~l~~i~~P~ltllI~~pl~l~viGPig~~ig~~i~~~~~~l~~~~~~i~g~i~G  294 (625)
T PRK09824        215 SSVIPIIFSAWLCSILERRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMG  294 (625)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             42599999999999999999874739888869889999999999999576689999999999999998513199999999


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             999999999999742
Q gi|254780335|r  112 LFLLIITTSCWNLIV  126 (156)
Q Consensus       112 ~li~~i~~~~~~~~~  126 (156)
                      .+.-.+....+++..
T Consensus       295 ~~~~~lVitGlH~~l  309 (625)
T PRK09824        295 GFWQIFVMFGLHWGL  309 (625)
T ss_pred             HHHHHHHHHHCCHHH
T ss_conf             999999988232536


No 10 
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=39.69  E-value=23  Score=14.53  Aligned_cols=81  Identities=20%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHH
Q ss_conf             9999999999999999999----84039889999999999999999999999999999998----5222-3448999999
Q gi|254780335|r   36 WIVAAIMTRYLYPMLLERV----SEFFKSKQVAIIMTIIPLFLIILTVVSILLKIMSTPIR----IRSV-LLDKILGCAF  106 (156)
Q Consensus        36 wi~a~~~a~~~~~~l~~~l----~~~~~~~~~~~i~a~~~iFi~~~i~~~~i~~~l~~~i~----~~~~-~~Dr~lG~~f  106 (156)
                      .+.+..+.+...|.+.+..    ...++++.+..+++-++.|+.+...+..+.+.+++.=+    .... .+-+..|.+.
T Consensus        11 ~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~li~~~~~~~~~~~~~~le~~i~k~~~~~ilf~tiGLii   90 (356)
T COG4956          11 IIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVLNWLKRLEEQIRKLPVTTILFGTIGLII   90 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99975666742899986268664112131879999999999999999999999999999999983689999998788999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780335|r  107 GGVRGLFLLI  116 (156)
Q Consensus       107 G~~rg~li~~  116 (156)
                      |.+-+.++..
T Consensus        91 GLlia~l~~~  100 (356)
T COG4956          91 GLLIAVLLSS  100 (356)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999853


No 11 
>pfam06570 DUF1129 Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=39.40  E-value=23  Score=14.51  Aligned_cols=110  Identities=11%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CC-CHHHHHHHHHHHHH
Q ss_conf             00999999999999999999988999----99999999999999999999999999840----39-88999999999999
Q gi|254780335|r    3 ITYFDIFCFGFISISSMLAMARGIFS----EMISLTNWIVAAIMTRYLYPMLLERVSEF----FK-SKQVAIIMTIIPLF   73 (156)
Q Consensus         3 m~~~D~~i~~ii~~~~~~G~~rG~i~----e~~sl~~wi~a~~~a~~~~~~l~~~l~~~----~~-~~~~~~i~a~~~iF   73 (156)
                      +.++|-.++...+++.+.|..-=|-+    .-.++++.++...++-........++..+    -+ .+++..+...+..+
T Consensus        78 ~~alD~~Ll~~~if~~m~Gi~~~Fs~~~~~~~~Gi~tlil~~~~gG~~m~~~~~~l~~~~~~k~kr~~~~k~i~~~~~~~  157 (206)
T pfam06570        78 LMALDNSLLFLGIFALMNGIMALFSKNAQPAYSGITTLLLTSLVGGLAMYYMYRYLYRYLKDKSKRPPWWKSLLILVLAV  157 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999828999999999999999478888775529999999999999999999996413356532422999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999985222-34489999999999999
Q gi|254780335|r   74 LIILTVVSILLKIMSTPIRIRSV-LLDKILGCAFGGVRGLF  113 (156)
Q Consensus        74 i~~~i~~~~i~~~l~~~i~~~~~-~~Dr~lG~~fG~~rg~l  113 (156)
                      +.-.++.. +..++-+.++...- ..+=++|++-..+|-++
T Consensus       158 v~w~~~~~-~~~~lP~~INP~Lp~~v~iiigaia~~~r~~l  197 (206)
T pfam06570       158 VVWMAVFT-LTSMLPPVINPVLPPWVYIIIGAIAFGVRYYL  197 (206)
T ss_pred             HHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999-99976122588986699999999999999999


No 12 
>KOG2322 consensus
Probab=36.98  E-value=25  Score=14.29  Aligned_cols=55  Identities=7%  Similarity=0.082  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             999999889999999999999999999----99999999998403988999999999999999
Q gi|254780335|r   18 SMLAMARGIFSEMISLTNWIVAAIMTR----YLYPMLLERVSEFFKSKQVAIIMTIIPLFLII   76 (156)
Q Consensus        18 ~~~G~~rG~i~e~~sl~~wi~a~~~a~----~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~   76 (156)
                      .-...+|||+|.+.|+++-=+-.-.+.    .++++...+..+   |+++ ...+++..++..
T Consensus        39 ~~~~iR~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~---~~~~-~~~~~~vf~vt~   97 (237)
T KOG2322          39 CDQSIRWGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRR---NPAL-YWALIVVFIVTY   97 (237)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHH---CCHH-HHHHHHHHHHHH
T ss_conf             0288999999999999999999999861477973479999984---9179-999999999999


No 13 
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component; InterPro: IPR011297   The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) ,  is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars.   The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII).    The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site.    An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , .    This entry represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (hydroquinone-O-beta-D-glucopyranoside) . These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=31.38  E-value=32  Score=13.78  Aligned_cols=115  Identities=8%  Similarity=0.094  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999984039889---999999999999999999999999999998522234489999999999999
Q gi|254780335|r   37 IVAAIMTRYLYPMLLERVSEFFKSKQ---VAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGCAFGGVRGLF  113 (156)
Q Consensus        37 i~a~~~a~~~~~~l~~~l~~~~~~~~---~~~i~a~~~iFi~~~i~~~~i~~~l~~~i~~~~~~~Dr~lG~~fG~~rg~l  113 (156)
                      +.-+.++.|+..++..++++++++.-   +...+..++..=.++++..=++..++..+-.....+.+..|.+-+.+=|.+
T Consensus       237 VIP~il~v~lm~y~eK~~~K~~P~~~~~F~~Pll~~LI~~PltL~i~GP~g~~~g~gi~~~~~~Ly~~~p~~A~~llaa~  316 (660)
T TIGR01995       237 VIPVILAVWLMSYVEKFLKKVIPKALKNFLTPLLVMLITVPLTLLILGPVGVYLGEGIASGILFLYEVSPWLAGALLAAV  316 (660)
T ss_pred             HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68999999998534012230364678986414999999888888654358999999999999988743038999999988


Q ss_pred             HHHHHHHHHHHHCCC--------CCCCHHHHHHHH-HHHHHHHHHHH
Q ss_conf             999999999974294--------524389999799-99999999999
Q gi|254780335|r  114 LLIITTSCWNLIVHE--------SREPAWIQKSIS-KKALDRMGTRL  151 (156)
Q Consensus       114 i~~i~~~~~~~~~~~--------~~~~~~~~~S~~-~~~l~~~~~~l  151 (156)
                      .=.++.+.+++...|        .-.+..+.-+-+ ...+.+.+..+
T Consensus       317 ~p~~V~~G~Hw~~~Pi~i~~~a~~G~D~~i~p~~~m~~~faq~gA~L  363 (660)
T TIGR01995       317 WPVLVMFGLHWALIPIVINNIATQGFDPLILPVALMAANFAQAGAVL  363 (660)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999970215689999985421487577899999986777899999


No 14 
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=28.76  E-value=35  Score=13.52  Aligned_cols=18  Identities=17%  Similarity=0.289  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             998899999999999999
Q gi|254780335|r   22 MARGIFSEMISLTNWIVA   39 (156)
Q Consensus        22 ~~rG~i~e~~sl~~wi~a   39 (156)
                      ...|+-||...=.+.+.|
T Consensus       178 lllG~~r~~AaefSFlLa  195 (270)
T COG1968         178 LLLGLSREAAAEFSFLLA  195 (270)
T ss_pred             HHCCCCHHHHHHHHHHHH
T ss_conf             991888988999979989


No 15 
>pfam02673 BacA Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol.
Probab=28.23  E-value=36  Score=13.47  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=29.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             099999999999999999998899999999--------------999999999999999999999840398899999999
Q gi|254780335|r    4 TYFDIFCFGFISISSMLAMARGIFSEMISL--------------TNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTI   69 (156)
Q Consensus         4 ~~~D~~i~~ii~~~~~~G~~rG~i~e~~sl--------------~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~   69 (156)
                      ..+|+.+=.=-+++.+.-|+|-..+...+.              ...+.|..-+.-.+-.+.+.+++...++.   .+++
T Consensus        38 ~~f~i~lH~GtllAv~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~iiiatlP~~iiG~~~~~~i~~~~~~~~---~i~~  114 (255)
T pfam02673        38 LAFDVVIQLGTILAVLVYFRKDILRLLRGLLRSLRRDKPDRRLLLLIIIGTIPAGVVGLLFKDFIEALLRSPV---VIAI  114 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHH
T ss_conf             8999999998899999999999999999886420258813689999999998899999999999999853889---9999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780335|r   70 IPLFLIIL   77 (156)
Q Consensus        70 ~~iFi~~~   77 (156)
                      ..++-+.+
T Consensus       115 ~lii~gil  122 (255)
T pfam02673       115 ALIVGGLL  122 (255)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 16 
>COG1263 PtsG Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]
Probab=27.46  E-value=37  Score=13.39  Aligned_cols=97  Identities=13%  Similarity=0.144  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHH
Q ss_conf             999999999999999999999999998403988999999999999999---999999999999999852223----4489
Q gi|254780335|r   29 EMISLTNWIVAAIMTRYLYPMLLERVSEFFKSKQVAIIMTIIPLFLII---LTVVSILLKIMSTPIRIRSVL----LDKI  101 (156)
Q Consensus        29 e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~~~~~~i~a~~~iFi~~---~i~~~~i~~~l~~~i~~~~~~----~Dr~  101 (156)
                      +.....|-+.+...+.++...+.|.+.++++......+..+....+..   .++..-+++.++.....-...    ..-+
T Consensus       125 ~~~~~~G~V~~~l~~~~~~~~ie~~~~~ff~g~~~v~ivp~~~~li~~~l~~~vw~pi~~~I~~~~~~~~~~~~~~~~~~  204 (393)
T COG1263         125 PLGIYQGTVIPILYNRFYLIKIEPELLKFFPGKRFVPIVPFLTLLITGLLALLVWPPIGGGIGSLGSFGLTAIYGSAGAL  204 (393)
T ss_pred             CCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             34450038999999999998860999976687515407789999999999999688699999999999998631555079


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999974
Q gi|254780335|r  102 LGCAFGGVRGLFLLIITTSCWNLI  125 (156)
Q Consensus       102 lG~~fG~~rg~li~~i~~~~~~~~  125 (156)
                      .|+++|.....++..=+++.++..
T Consensus       205 ~~~i~G~l~r~LV~~GLHh~~~~i  228 (393)
T COG1263         205 GGAIYGFLYRLLVPTGLHHIFNPI  228 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999997212879999


No 17 
>KOG4112 consensus
Probab=27.40  E-value=37  Score=13.39  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999889999999999999
Q gi|254780335|r   12 GFISISSMLAMARGIFSEMISLTNWIV   38 (156)
Q Consensus        12 ~ii~~~~~~G~~rG~i~e~~sl~~wi~   38 (156)
                      +++.++++.|+.-||..|-+|-.-.+.
T Consensus        30 ~ilti~aiVg~i~Gf~~Qqls~tvy~v   56 (101)
T KOG4112          30 LILTIGAIVGFIYGFAQQQLSVTVYIV   56 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999988999999


No 18 
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=24.22  E-value=43  Score=13.05  Aligned_cols=20  Identities=15%  Similarity=0.144  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999
Q gi|254780335|r   29 EMISLTNWIVAAIMTRYLYP   48 (156)
Q Consensus        29 e~~sl~~wi~a~~~a~~~~~   48 (156)
                      +.+..+.|+.+.++.+.-+.
T Consensus        70 ~~f~~lk~~Ga~YLi~Lg~~   89 (205)
T PRK10520         70 LAFEVLKWAGAAYLIWLGIQ   89 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999


No 19 
>pfam07290 DUF1449 Protein of unknown function (DUF1449). This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=22.02  E-value=48  Score=12.81  Aligned_cols=15  Identities=0%  Similarity=-0.088  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780335|r   77 LTVVSILLKIMSTPI   91 (156)
Q Consensus        77 ~i~~~~i~~~l~~~i   91 (156)
                      +..+++.+..++...
T Consensus        73 L~~Fgl~G~~lq~~~   87 (202)
T pfam07290        73 AGAFGLTGILIQHVA   87 (202)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 20 
>TIGR00926 2A1704 Oligopeptide transporter (Peptide:H+ symporter); InterPro: IPR004768 Oligopeptide transporter, peptide:H+ symporter supports the proton-coupled intake of oligopeptides of 2 to 4 amino acids. These proteins may constitute a major route for the absorption of the end products of protein digestion.; GO: 0015198 oligopeptide transporter activity, 0006857 oligopeptide transport, 0016021 integral to membrane.
Probab=21.67  E-value=48  Score=12.77  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHH-HHHH
Q ss_conf             99999999999999999999999999999840398-89999999999999999999999999999998-52-223-4489
Q gi|254780335|r   26 IFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKS-KQVAIIMTIIPLFLIILTVVSILLKIMSTPIR-IR-SVL-LDKI  101 (156)
Q Consensus        26 ~i~e~~sl~~wi~a~~~a~~~~~~l~~~l~~~~~~-~~~~~i~a~~~iFi~~~i~~~~i~~~l~~~i~-~~-~~~-~Dr~  101 (156)
                      -++..+++.|+.+-++.+=---|=++++-.+-.+- +.-....-|..+|=.+.=..++++-.++.++| .. -.+ =|.=
T Consensus       108 ~~h~~ldl~GL~lIAlGTGGIKPCVSAFGGDQF~~P~q~~~~s~FFS~FYfaINAGSLiSt~iTPiLR~~~~CfGs~~~C  187 (781)
T TIGR00926       108 SLHPALDLVGLLLIALGTGGIKPCVSAFGGDQFEEPGQERMRSRFFSMFYFAINAGSLISTIITPILRGSVKCFGSQQDC  187 (781)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCC
T ss_conf             75157889999999985279776637887777787458999985201788898788999998625460002455888543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999742945243--899997999999999999
Q gi|254780335|r  102 LGCAFGGVRGLFLLIITTSCWNLIVHESREP--AWIQKSISKKALDRMGTR  150 (156)
Q Consensus       102 lG~~fG~~rg~li~~i~~~~~~~~~~~~~~~--~~~~~S~~~~~l~~~~~~  150 (156)
                      .-.+||.=--.-++.+++++.......+++|  +.+-.--.+-......++
T Consensus       188 ypLAFGvPaiLMi~AlivF~~Gs~~YkK~PPs~~Ni~~~V~~~I~~Al~~~  238 (781)
T TIGR00926       188 YPLAFGVPAILMIVALIVFMAGSFMYKKQPPSKGNIIFKVIRCIATALKNK  238 (781)
T ss_pred             CCHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             420034168999999999983031347591786650578899999998654


No 21 
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=21.03  E-value=50  Score=12.69  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99999999999999999984039889
Q gi|254780335|r   37 IVAAIMTRYLYPMLLERVSEFFKSKQ   62 (156)
Q Consensus        37 i~a~~~a~~~~~~l~~~l~~~~~~~~   62 (156)
                      ++|..-+--.+-.+.+.+++..+++.
T Consensus        93 iiatiP~~iiG~~~~~~i~~~~~~~~  118 (277)
T PRK12554         93 IIATIPAGVIGLLFKDRIEEVLFDLR  118 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             99999899999999999999963769


Done!