HHsearch alignment for GI: 254780336 and conserved domain: PRK12562
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional.
Probab=91.45 E-value=0.98 Score=25.10 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=76.2
Q ss_pred HCCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCH
Q ss_conf 0024743000-3728999999999999874865677-2012001204779999998199600100117653210110644
Q gi|254780336|r 260 VYFARPDSII-SGRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSH 337 (488)
Q Consensus 260 IYFarpdS~~-~g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~ 337 (488)
T Consensus 75 i~l~~~~s~~~kgEsl~Dt~~vLs~~--------~D~iv~R~~~~~~--~~~la~~s~vPVINg~~~-------~~HPtQ 137 (334)
T PRK12562 75 TYLGPSGSQIGHKESIKDTARVLGRM--------YDGIQYRGHGQEV--VETLAEYAGVPVWNGLTN-------EFHPTQ 137 (334)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHH--------CCEEEECCCCCHH--HHHHHHHCCCCEEECCCC-------CCCCHH
T ss_conf 98587645278998889999999860--------7778973557389--999999759998889987-------767179
Q ss_pred HHHHHH-HHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 677765-3201343245533893289740353333388899999853997899996589805886
Q gi|254780336|r 338 HIRAFG-VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPD 401 (488)
Q Consensus 338 ~~R~~~-v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc 401 (488)
T Consensus 138 aL~Dl~Ti~E~~~--g~~l~~l~i~~vGD~--~n~va~S~i~~~~~lG~---~v~~~~P~~~~p~ 195 (334)
T PRK12562 138 LLADLLTMQEHLP--GKAFNEMTLVYAGDA--RNNMGNSMLEAAALTGL---DLRLVAPQACWPE 195 (334)
T ss_pred HHHHHHHHHHHHC--CCCCCCEEEEEECCC--CCCHHHHHHHHHHHCCC---EEEEECCCCCCCC
T ss_conf 9999999999846--898677189996888--66357999999997498---6999789766888