Query gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 488
No_of_seqs 228 out of 4342
Neff 5.9
Searched_HMMs 39220
Date Sun May 29 16:47:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780336.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09123 amidophosphoribosyltr 100.0 0 0 1300.9 45.9 474 7-486 6-479 (480)
2 PRK07631 amidophosphoribosyltr 100.0 0 0 1283.1 47.0 472 6-485 3-474 (475)
3 PRK07272 amidophosphoribosyltr 100.0 0 0 1280.5 47.3 467 7-480 4-473 (484)
4 PRK07349 amidophosphoribosyltr 100.0 0 0 1280.9 45.3 464 4-479 18-488 (495)
5 PRK06781 amidophosphoribosyltr 100.0 0 0 1277.9 46.9 464 7-478 4-467 (471)
6 PRK05793 amidophosphoribosyltr 100.0 0 0 1269.1 46.2 466 1-480 5-472 (472)
7 COG0034 PurF Glutamine phospho 100.0 0 0 1270.0 44.6 463 11-482 1-467 (470)
8 TIGR01134 purF amidophosphorib 100.0 0 0 1278.4 38.4 444 15-467 1-467 (467)
9 PRK06388 amidophosphoribosyltr 100.0 0 0 1252.4 44.5 464 3-479 8-472 (474)
10 PRK09246 amidophosphoribosyltr 100.0 0 0 1239.1 46.0 461 14-483 1-481 (503)
11 PRK07847 amidophosphoribosyltr 100.0 0 0 1227.6 45.0 457 17-486 1-465 (489)
12 PRK08525 amidophosphoribosyltr 100.0 0 0 1218.0 44.7 444 14-469 1-445 (445)
13 PRK08341 amidophosphoribosyltr 100.0 0 0 1200.5 42.2 439 11-472 1-441 (442)
14 KOG0572 consensus 100.0 0 0 1131.9 39.1 455 14-476 1-470 (474)
15 cd00715 GPATase_N Glutamine am 100.0 0 0 585.2 26.9 250 15-270 1-252 (252)
16 cd01907 GlxB Glutamine amidotr 100.0 0 0 424.3 22.1 211 15-230 1-248 (249)
17 cd00714 GFAT Glutamine amidotr 100.0 0 0 416.6 21.8 210 15-231 1-215 (215)
18 pfam00310 GATase_2 Glutamine a 100.0 0 0 381.6 18.5 191 15-209 1-223 (223)
19 TIGR01135 glmS glucosamine--fr 100.0 0 0 371.2 22.2 262 15-286 1-279 (628)
20 PRK00331 glucosamine--fructose 100.0 0 0 366.2 22.8 214 14-234 1-219 (604)
21 PTZ00295 glucosamine-fructose- 100.0 9.2E-44 0 331.5 21.9 216 14-238 78-304 (691)
22 COG0449 GlmS Glucosamine 6-pho 100.0 7.2E-43 0 325.2 20.5 257 14-286 1-264 (597)
23 cd00352 Gn_AT_II Glutamine ami 100.0 4.4E-42 0 319.6 22.8 212 15-229 1-220 (220)
24 TIGR01536 asn_synth_AEB aspara 100.0 5.5E-38 1.4E-42 290.4 23.6 203 15-229 1-218 (646)
25 TIGR03104 trio_amidotrans aspa 100.0 8.2E-37 2.1E-41 282.1 24.7 245 14-314 1-284 (589)
26 TIGR03108 eps_aminotran_1 exos 100.0 3E-36 7.5E-41 278.1 25.2 247 14-317 1-285 (628)
27 PRK09431 asnB asparagine synth 100.0 5.6E-35 1.4E-39 269.0 24.1 240 14-315 1-252 (555)
28 PTZ00077 asparagine synthetase 100.0 1.7E-34 4.3E-39 265.6 24.4 247 14-314 1-261 (610)
29 cd00712 AsnB Glutamine amidotr 100.0 5.5E-35 1.4E-39 269.1 20.6 180 15-234 1-211 (220)
30 COG0367 AsnB Asparagine syntha 100.0 5.9E-32 1.5E-36 247.4 23.2 238 14-311 1-252 (542)
31 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 1.1E-27 2.9E-32 217.0 15.5 174 14-228 1-180 (181)
32 KOG1268 consensus 100.0 7.3E-28 1.9E-32 218.3 14.1 225 14-246 1-286 (670)
33 KOG0571 consensus 99.9 5E-23 1.3E-27 183.9 14.2 334 14-413 1-362 (543)
34 cd01908 YafJ Glutamine amidotr 99.9 3.6E-20 9.2E-25 163.5 18.7 209 14-232 1-255 (257)
35 cd01909 betaLS_CarA_N Glutamin 99.9 2.2E-20 5.7E-25 165.0 16.3 147 80-240 26-190 (199)
36 COG0067 GltB Glutamate synthas 99.8 9.2E-19 2.3E-23 153.5 17.2 161 56-230 177-357 (371)
37 TIGR03442 conserved hypothetic 99.8 3.9E-17 1E-21 141.9 19.5 208 14-234 1-244 (251)
38 PRK11750 gltB glutamate syntha 99.8 1.4E-17 3.6E-22 145.1 15.2 172 56-236 187-407 (1483)
39 cd00713 GltS Glutamine amidotr 99.7 5.3E-16 1.4E-20 133.8 17.8 174 53-236 173-397 (413)
40 COG0121 Predicted glutamine am 99.6 2.5E-14 6.3E-19 122.0 14.4 212 14-233 1-243 (252)
41 pfam00156 Pribosyltran Phospho 99.1 3E-10 7.6E-15 92.9 8.1 110 277-392 9-121 (123)
42 KOG0573 consensus 99.1 3.1E-09 7.9E-14 85.6 12.4 164 14-226 1-171 (520)
43 KOG0399 consensus 99.0 8.2E-09 2.1E-13 82.6 12.5 175 52-235 255-480 (2142)
44 PRK11595 gluconate periplasmic 98.9 6.9E-09 1.8E-13 83.2 9.0 99 292-392 112-222 (227)
45 cd01910 Wali7 This domain is p 98.7 4E-07 1E-11 70.6 11.9 151 84-250 50-204 (224)
46 PRK06031 phosphoribosyltransfe 98.6 2.1E-07 5.4E-12 72.6 8.5 123 267-393 58-190 (233)
47 COG1926 Predicted phosphoribos 98.5 1E-06 2.6E-11 67.7 8.8 116 277-393 6-160 (220)
48 COG1040 ComFC Predicted amidop 98.4 2.6E-06 6.5E-11 64.9 9.5 109 280-392 96-219 (225)
49 PRK07322 adenine phosphoribosy 98.4 1.9E-06 4.9E-11 65.8 8.7 114 278-391 38-154 (178)
50 PRK09162 hypoxanthine-guanine 98.4 4.9E-06 1.2E-10 62.9 9.7 133 269-410 17-157 (181)
51 COG0503 Apt Adenine/guanine ph 98.2 6.5E-06 1.6E-10 62.0 7.7 108 279-391 40-150 (179)
52 PRK02269 ribose-phosphate pyro 98.2 5.2E-06 1.3E-10 62.7 6.6 149 280-444 152-301 (321)
53 PRK12560 adenine phosphoribosy 98.2 1.3E-05 3.2E-10 59.9 8.2 130 255-392 11-146 (184)
54 PRK02277 orotate phosphoribosy 98.2 1.2E-05 3.1E-10 60.0 8.0 110 272-393 61-177 (201)
55 PRK08558 adenine phosphoribosy 98.1 1.4E-05 3.5E-10 59.7 7.6 111 279-390 97-209 (238)
56 PRK00455 pyrE orotate phosphor 98.1 2.8E-05 7.2E-10 57.4 9.0 130 276-445 45-179 (200)
57 COG0856 Orotate phosphoribosyl 98.1 1E-05 2.6E-10 60.6 6.0 96 287-392 81-176 (203)
58 PRK09219 xanthine phosphoribos 98.0 3.1E-05 8E-10 57.1 7.9 111 277-392 34-152 (189)
59 PRK02458 ribose-phosphate pyro 98.0 2E-05 5.1E-10 58.5 6.8 142 282-443 158-300 (323)
60 PRK13809 orotate phosphoribosy 98.0 5.6E-05 1.4E-09 55.3 9.0 132 276-445 50-185 (206)
61 PRK03675 consensus 98.0 2.6E-05 6.8E-10 57.6 7.3 87 295-397 154-241 (279)
62 PRK05205 bifunctional pyrimidi 98.0 0.00011 2.8E-09 53.2 10.2 143 267-415 5-160 (176)
63 PRK00934 ribose-phosphate pyro 98.0 3.3E-05 8.3E-10 57.0 7.3 92 294-400 155-247 (286)
64 PRK04117 consensus 98.0 1.4E-05 3.5E-10 59.7 5.3 130 294-443 162-292 (309)
65 PRK02304 adenine phosphoribosy 98.0 4.9E-05 1.3E-09 55.7 7.9 114 276-392 33-148 (174)
66 PRK01259 ribose-phosphate pyro 98.0 1.7E-05 4.4E-10 59.0 5.5 145 280-443 147-292 (309)
67 PTZ00271 hypoxanthine-guanine 98.0 0.0002 5E-09 51.4 10.9 131 271-409 30-176 (211)
68 PRK13811 orotate phosphoribosy 97.9 7E-05 1.8E-09 54.6 8.1 126 277-442 43-168 (170)
69 PRK02270 consensus 97.9 1.5E-05 3.7E-10 59.5 4.5 137 293-444 162-299 (327)
70 PRK13810 orotate phosphoribosy 97.9 0.00013 3.3E-09 52.7 9.3 101 276-392 56-157 (187)
71 PRK03092 ribose-phosphate pyro 97.9 6.8E-05 1.7E-09 54.7 7.8 148 280-444 136-285 (304)
72 PRK06827 phosphoribosylpyropho 97.9 5.9E-05 1.5E-09 55.2 7.5 98 293-398 208-306 (381)
73 COG0634 Hpt Hypoxanthine-guani 97.9 9.6E-05 2.4E-09 53.7 8.5 137 265-409 8-151 (178)
74 PRK02039 consensus 97.9 4.3E-05 1.1E-09 56.2 6.6 133 294-443 165-298 (316)
75 PRK01506 consensus 97.9 2E-05 5.2E-10 58.5 4.8 143 281-443 157-300 (317)
76 PRK01132 consensus 97.9 7E-05 1.8E-09 54.6 7.3 93 292-400 153-246 (286)
77 PRK01999 consensus 97.9 4.7E-05 1.2E-09 55.9 6.4 141 281-443 152-293 (311)
78 PRK00553 ribose-phosphate pyro 97.9 7.2E-05 1.8E-09 54.5 7.3 132 294-443 177-313 (340)
79 PRK05500 bifunctional orotidin 97.9 8.7E-05 2.2E-09 54.0 7.7 130 279-445 330-460 (478)
80 PRK05259 consensus 97.9 4.3E-05 1.1E-09 56.1 6.1 135 293-444 159-294 (310)
81 PRK04554 consensus 97.8 4.5E-05 1.2E-09 56.0 6.0 145 281-444 155-300 (327)
82 PRK04923 ribose-phosphate pyro 97.8 6.1E-05 1.5E-09 55.1 6.3 143 283-443 157-301 (319)
83 PRK05038 consensus 97.8 6.9E-05 1.8E-09 54.7 6.5 143 281-443 152-297 (315)
84 PRK02812 ribose-phosphate pyro 97.8 4.4E-05 1.1E-09 56.1 5.5 133 293-443 179-314 (331)
85 PRK13812 orotate phosphoribosy 97.8 0.00021 5.3E-09 51.3 8.3 100 276-392 43-142 (174)
86 COG0462 PrsA Phosphoribosylpyr 97.7 0.00029 7.5E-09 50.2 9.0 146 280-443 151-297 (314)
87 PRK07199 phosphoribosylpyropho 97.7 0.00031 7.9E-09 50.0 8.5 118 281-415 151-269 (301)
88 COG0461 PyrE Orotate phosphori 97.4 0.00099 2.5E-08 46.4 7.9 136 276-446 43-180 (201)
89 TIGR01090 apt adenine phosphor 97.4 0.0017 4.3E-08 44.8 9.0 124 266-391 22-148 (175)
90 PTZ00145 phosphoribosylpyropho 97.4 0.00015 3.9E-09 52.3 3.6 134 295-445 285-426 (443)
91 PRK09213 purine operon repress 97.4 0.00085 2.2E-08 46.9 7.3 109 279-392 116-231 (274)
92 PRK09177 xanthine-guanine phos 97.3 0.0013 3.3E-08 45.6 7.3 120 274-409 15-134 (156)
93 TIGR00201 comF comF family pro 97.2 0.00023 5.7E-09 51.0 2.9 112 277-390 63-202 (207)
94 pfam09147 DUF1933 Domain of un 97.0 0.019 4.9E-07 37.3 11.2 121 113-241 51-196 (201)
95 PTZ00149 hypoxanthine phosphor 96.9 0.0055 1.4E-07 41.1 7.2 124 279-410 55-196 (231)
96 COG2065 PyrR Pyrimidine operon 96.6 0.029 7.4E-07 36.0 9.2 142 268-417 6-163 (179)
97 TIGR01743 purR_Bsub pur operon 96.3 0.027 6.9E-07 36.2 7.8 104 279-387 114-225 (269)
98 TIGR01251 ribP_PPkin ribose-ph 96.3 0.024 6.1E-07 36.6 7.5 123 280-417 148-276 (316)
99 COG2236 Predicted phosphoribos 96.3 0.011 2.8E-07 39.0 5.8 125 275-407 9-136 (192)
100 KOG3367 consensus 94.9 0.035 8.9E-07 35.4 3.9 163 223-409 4-183 (216)
101 TIGR01744 XPRTase xanthine pho 94.6 0.17 4.4E-06 30.5 6.8 107 276-390 33-150 (191)
102 TIGR01203 HGPRTase hypoxanthin 94.5 0.42 1.1E-05 27.7 8.5 117 269-392 3-136 (183)
103 KOG1448 consensus 94.2 0.14 3.5E-06 31.2 5.5 90 290-393 160-250 (316)
104 TIGR00336 pyrE orotate phospho 94.1 0.21 5.4E-06 29.9 6.3 135 276-431 39-177 (187)
105 KOG1712 consensus 93.6 0.27 6.9E-06 29.1 6.2 107 288-398 55-165 (183)
106 PRK00129 upp uracil phosphorib 93.5 0.062 1.6E-06 33.6 2.7 49 344-392 110-158 (208)
107 TIGR01367 pyrE_Therm orotate p 93.5 0.46 1.2E-05 27.5 7.2 102 276-391 39-145 (205)
108 PRK00934 ribose-phosphate pyro 93.2 0.53 1.3E-05 27.0 7.2 26 370-395 242-267 (286)
109 PRK02812 ribose-phosphate pyro 93.1 0.64 1.6E-05 26.4 7.5 46 370-415 268-314 (331)
110 PRK01259 ribose-phosphate pyro 92.7 0.89 2.3E-05 25.4 7.8 27 370-396 246-272 (309)
111 PRK01506 consensus 92.4 0.92 2.3E-05 25.3 7.4 52 328-395 229-280 (317)
112 PRK04117 consensus 92.3 0.84 2.1E-05 25.6 7.1 40 373-415 252-292 (309)
113 PRK05259 consensus 92.3 0.88 2.2E-05 25.5 7.2 42 373-415 250-293 (310)
114 PRK12562 ornithine carbamoyltr 91.5 0.98 2.5E-05 25.1 6.7 118 260-401 75-195 (334)
115 PRK02255 putrescine carbamoylt 91.0 1.3 3.4E-05 24.2 7.0 103 271-397 85-189 (341)
116 COG0067 GltB Glutamate synthas 88.5 0.82 2.1E-05 25.7 4.3 42 9-50 7-54 (371)
117 pfam00148 Oxidored_nitro Nitro 88.0 2.2 5.6E-05 22.6 7.2 96 293-396 194-307 (398)
118 TIGR01091 upp uracil phosphori 86.9 1 2.6E-05 25.0 4.1 91 295-396 75-169 (213)
119 PRK03515 ornithine carbamoyltr 86.5 2.7 6.8E-05 22.0 7.0 109 270-401 86-195 (334)
120 COG2454 Uncharacterized conser 84.9 2 5E-05 23.0 4.7 39 352-391 81-134 (211)
121 PRK02102 ornithine carbamoyltr 84.0 3.4 8.8E-05 21.2 7.0 107 270-401 87-194 (331)
122 PRK11891 aspartate carbamoyltr 83.8 1.4 3.6E-05 24.0 3.6 111 267-396 166-278 (430)
123 PRK08192 aspartate carbamoyltr 82.8 3.8 9.7E-05 20.9 5.9 109 270-398 86-197 (338)
124 PRK09423 gldA glycerol dehydro 81.7 2 5.2E-05 22.9 3.7 13 123-135 46-58 (366)
125 COG0035 Upp Uracil phosphoribo 79.4 3 7.7E-05 21.6 3.9 45 347-391 114-159 (210)
126 pfam01488 Shikimate_DH Shikima 77.6 5.5 0.00014 19.7 7.0 65 354-446 9-74 (134)
127 COG1736 DPH2 Diphthamide synth 76.1 6.1 0.00015 19.5 5.3 89 291-385 177-268 (347)
128 PRK00856 pyrB aspartate carbam 75.5 6.3 0.00016 19.4 7.3 110 271-403 86-197 (304)
129 TIGR02622 CDP_4_6_dhtase CDP-g 74.8 6.5 0.00017 19.2 4.9 125 108-245 56-235 (361)
130 COG0078 ArgF Ornithine carbamo 74.8 6.5 0.00017 19.2 7.9 105 270-401 85-191 (310)
131 COG2875 CobM Precorrin-4 methy 74.8 6.6 0.00017 19.2 7.6 125 270-397 84-231 (254)
132 pfam08759 DUF1792 Domain of un 73.9 5.1 0.00013 20.0 3.9 110 278-397 27-149 (225)
133 PRK04284 ornithine carbamoyltr 73.8 6.9 0.00018 19.1 7.5 106 270-400 86-193 (332)
134 PRK07883 hypothetical protein; 70.7 5.7 0.00015 19.7 3.5 42 105-147 100-143 (575)
135 pfam05014 Nuc_deoxyrib_tr Nucl 70.2 3 7.6E-05 21.7 2.0 29 292-320 60-93 (112)
136 COG2072 TrkA Predicted flavopr 68.4 9 0.00023 18.3 4.6 17 33-51 23-39 (443)
137 pfam08973 DUF1893 Domain of un 67.8 2.8 7.2E-05 21.8 1.5 26 169-195 10-35 (134)
138 pfam00185 OTCace Aspartate/orn 67.1 9.5 0.00024 18.1 4.4 43 356-402 1-43 (155)
139 PRK13566 anthranilate synthase 66.9 9.5 0.00024 18.1 4.0 37 354-395 520-558 (724)
140 TIGR03316 ygeW probable carbam 65.2 10 0.00026 17.8 5.3 82 313-405 133-219 (357)
141 cd01065 NAD_bind_Shikimate_DH 62.3 12 0.0003 17.5 3.9 36 355-394 17-52 (155)
142 COG2871 NqrF Na+-transporting 62.1 5.8 0.00015 19.6 2.2 18 223-242 156-173 (410)
143 COG1636 Uncharacterized protei 60.5 12 0.00032 17.3 4.6 29 260-290 32-60 (204)
144 TIGR01420 pilT_fam twitching m 60.4 9.2 0.00024 18.2 3.0 71 217-314 148-225 (350)
145 cd00158 RHOD Rhodanese Homolog 59.0 11 0.00028 17.7 3.1 35 354-391 47-81 (89)
146 TIGR02386 rpoC_TIGR DNA-direct 58.5 11 0.00029 17.5 3.2 119 272-412 909-1047(1552)
147 TIGR03183 DNA_S_dndC putative 57.7 11 0.00027 17.8 2.9 25 14-38 14-41 (447)
148 PRK09968 serine/threonine-spec 57.2 8.6 0.00022 18.4 2.4 12 26-37 26-37 (218)
149 pfam07368 DUF1487 Protein of u 57.0 14 0.00036 16.9 5.9 111 306-437 19-141 (215)
150 PRK06850 hypothetical protein; 54.9 15 0.00037 16.7 3.2 24 14-37 22-48 (488)
151 cd01976 Nitrogenase_MoFe_alpha 54.1 16 0.0004 16.5 9.2 87 296-390 224-329 (421)
152 PRK10624 L-1,2-propanediol oxi 53.0 13 0.00034 17.0 2.8 26 261-286 203-228 (381)
153 COG1004 Ugd Predicted UDP-gluc 52.7 16 0.00042 16.4 5.0 92 338-445 292-392 (414)
154 PRK01713 ornithine carbamoyltr 52.7 16 0.00042 16.4 7.3 107 270-400 87-194 (334)
155 pfam00590 TP_methylase Tetrapy 52.4 17 0.00042 16.4 8.2 81 289-390 98-178 (200)
156 cd01529 4RHOD_Repeats Member o 52.2 17 0.00043 16.3 3.4 35 355-392 54-88 (96)
157 PRK13029 2-oxoacid ferredoxin 51.9 17 0.00043 16.3 5.1 102 330-437 523-630 (1186)
158 COG1679 Predicted aconitase [G 51.8 10 0.00027 17.8 2.1 18 205-222 138-159 (403)
159 COG1224 TIP49 DNA helicase TIP 51.8 17 0.00043 16.3 4.1 12 223-234 187-198 (450)
160 COG3355 Predicted transcriptio 50.4 3.5 8.9E-05 21.2 -0.5 45 400-444 20-69 (126)
161 PTZ00123 phosphoglycerate muta 50.1 15 0.00038 16.7 2.6 104 269-388 80-188 (235)
162 TIGR02144 LysX_arch Lysine bio 49.7 8.1 0.00021 18.6 1.2 45 157-204 147-202 (289)
163 PRK09860 putative alcohol dehy 49.7 18 0.00046 16.1 3.1 28 257-285 200-227 (383)
164 COG3613 Nucleoside 2-deoxyribo 49.6 10 0.00026 17.9 1.7 23 298-320 81-103 (172)
165 pfam01696 Adeno_E1B_55K Adenov 49.0 19 0.00048 16.0 5.2 62 157-226 54-117 (387)
166 PRK11749 putative oxidoreducta 47.9 19 0.00049 15.9 4.3 35 353-391 272-306 (460)
167 TIGR02884 spore_pdaA delta-lac 47.7 8.8 0.00023 18.3 1.2 15 122-136 78-92 (225)
168 PRK00779 ornithine carbamoyltr 47.4 20 0.0005 15.8 6.8 104 270-400 85-190 (308)
169 TIGR01578 MiaB-like-B MiaB-lik 46.4 20 0.00052 15.7 5.1 11 164-174 219-229 (487)
170 pfam03387 Herpes_UL46 Herpesvi 45.5 10 0.00026 17.9 1.2 26 259-286 181-206 (443)
171 PRK08320 branched-chain amino 45.3 14 0.00037 16.8 2.0 32 354-385 192-225 (292)
172 PRK06585 holA DNA polymerase I 45.1 21 0.00054 15.6 3.6 11 13-23 18-28 (343)
173 COG3958 Transketolase, C-termi 45.0 20 0.00051 15.8 2.7 60 359-426 246-306 (312)
174 TIGR02193 heptsyl_trn_I lipopo 44.7 16 0.0004 16.5 2.1 38 292-334 284-321 (359)
175 pfam08029 HisG_C HisG, C-termi 44.6 19 0.00048 16.0 2.5 25 366-390 43-67 (73)
176 pfam12112 DUF3579 Protein of u 43.2 17 0.00042 16.3 2.0 42 68-119 20-65 (93)
177 TIGR01380 glut_syn glutathione 42.8 7.5 0.00019 18.8 0.2 14 30-43 20-33 (322)
178 COG4786 FlgG Flagellar basal b 41.7 24 0.00061 15.2 5.0 111 198-324 122-235 (265)
179 cd01532 4RHOD_Repeat_1 Member 41.6 24 0.00061 15.2 3.6 35 356-391 49-83 (92)
180 PRK12485 bifunctional 3,4-dihy 41.3 15 0.00038 16.7 1.6 30 376-407 330-361 (369)
181 pfam02780 Transketolase_C Tran 41.3 24 0.00062 15.2 4.1 61 329-398 42-105 (124)
182 PRK06975 bifunctional uroporph 40.5 20 0.00052 15.7 2.1 16 434-449 486-501 (653)
183 PRK09382 ispDF bifunctional 2- 38.7 25 0.00065 15.0 2.4 57 373-441 298-358 (382)
184 KOG1503 consensus 38.2 27 0.00068 14.9 4.4 67 351-417 241-307 (354)
185 TIGR01465 cobM_cbiF precorrin- 37.8 27 0.00069 14.8 7.3 159 200-399 45-230 (252)
186 KOG0519 consensus 37.5 28 0.0007 14.8 3.0 71 351-429 660-738 (786)
187 pfam06068 TIP49 TIP49 C-termin 37.4 28 0.0007 14.8 3.5 13 223-235 172-184 (395)
188 cd00992 PDZ_signaling PDZ doma 37.3 28 0.00071 14.8 3.4 37 354-391 44-80 (82)
189 cd01965 Nitrogenase_MoFe_beta_ 37.1 28 0.00071 14.8 7.2 95 294-394 225-332 (428)
190 PRK12810 gltD glutamate syntha 36.9 28 0.00072 14.7 4.1 73 311-393 241-313 (472)
191 PRK01710 murD UDP-N-acetylmura 36.8 28 0.00072 14.7 2.8 30 358-390 325-354 (458)
192 TIGR02704 carboxysome_B carbox 36.5 29 0.00073 14.7 3.1 41 166-213 14-59 (80)
193 cd01967 Nitrogenase_MoFe_alpha 36.4 29 0.00073 14.7 7.5 82 300-391 216-316 (406)
194 PRK13030 2-oxoacid ferredoxin 36.1 29 0.00074 14.6 4.9 103 330-437 506-613 (1168)
195 KOG1017 consensus 35.7 13 0.00033 17.1 0.5 58 327-387 161-219 (267)
196 COG3129 Predicted SAM-dependen 35.6 19 0.00048 16.0 1.3 59 356-428 223-284 (292)
197 PRK13585 1-(5-phosphoribosyl)- 35.0 30 0.00077 14.5 2.3 23 218-240 155-177 (240)
198 TIGR01347 sucB 2-oxoglutarate 34.9 7.7 0.0002 18.7 -0.8 15 173-187 299-315 (435)
199 PRK09319 bifunctional 3,4-dihy 34.7 20 0.0005 15.8 1.3 60 113-177 170-230 (552)
200 PRK12400 D-amino acid aminotra 34.7 27 0.0007 14.8 2.0 32 355-386 192-225 (290)
201 COG1060 ThiH Thiamine biosynth 34.5 30 0.00077 14.5 2.2 28 422-449 323-350 (370)
202 COG1411 Uncharacterized protei 34.3 26 0.00065 15.0 1.8 25 121-145 37-61 (229)
203 KOG3628 consensus 34.2 31 0.00079 14.4 3.3 58 84-149 555-615 (1363)
204 PRK13586 1-(5-phosphoribosyl)- 34.2 30 0.00076 14.6 2.1 22 219-240 153-174 (231)
205 TIGR02961 allantoicase allanto 33.9 14 0.00037 16.8 0.5 42 212-262 264-308 (376)
206 PRK04523 N-acetylornithine car 33.8 31 0.0008 14.4 4.9 78 305-396 127-208 (335)
207 PRK13356 aminotransferase; Pro 33.5 32 0.00081 14.4 3.5 69 307-392 163-233 (286)
208 cd01445 TST_Repeats Thiosulfat 33.2 32 0.00081 14.3 4.5 72 313-392 58-130 (138)
209 PRK07168 bifunctional uroporph 33.1 32 0.00082 14.3 6.1 130 118-278 171-318 (474)
210 PRK01295 phosphoglyceromutase; 32.5 33 0.00084 14.2 6.4 123 258-387 18-176 (206)
211 KOG4500 consensus 31.8 34 0.00086 14.2 2.7 51 259-313 339-406 (604)
212 PRK05637 anthranilate synthase 31.5 34 0.00087 14.1 3.9 10 169-178 101-110 (208)
213 PRK12479 branched-chain amino 31.4 34 0.00087 14.1 3.6 31 355-385 194-226 (299)
214 PHA02135 hypothetical protein 31.3 28 0.00072 14.7 1.6 27 223-261 87-113 (122)
215 KOG3985 consensus 31.3 34 0.00087 14.1 5.5 107 219-335 98-230 (283)
216 TIGR03455 HisG_C-term ATP phos 31.1 35 0.00088 14.1 2.4 25 366-390 69-93 (100)
217 PRK13814 pyrB aspartate carbam 31.1 35 0.00088 14.1 3.7 114 270-405 86-202 (310)
218 cd01974 Nitrogenase_MoFe_beta 30.7 35 0.00089 14.0 8.3 89 300-396 234-338 (435)
219 PRK09311 bifunctional 3,4-dihy 30.3 28 0.00071 14.7 1.5 37 376-413 337-375 (400)
220 pfam08665 PglZ PglZ domain. Th 30.3 36 0.00091 14.0 7.9 16 302-317 38-53 (176)
221 PRK09825 idnK D-gluconate kina 30.3 36 0.00091 14.0 2.2 70 294-363 6-81 (176)
222 cd01448 TST_Repeat_1 Thiosulfa 30.1 36 0.00091 14.0 4.6 68 315-391 44-111 (122)
223 PRK13587 1-(5-phosphoribosyl)- 29.9 36 0.00092 14.0 2.2 20 220-239 157-176 (234)
224 TIGR02707 butyr_kinase butyrat 29.8 36 0.00092 13.9 3.7 64 112-176 224-291 (353)
225 cd01535 4RHOD_Repeat_4 Member 29.7 36 0.00092 13.9 3.8 34 356-392 48-81 (145)
226 TIGR00143 hypF [NiFe] hydrogen 29.6 12 0.0003 17.4 -0.6 201 198-446 187-449 (799)
227 COG2845 Uncharacterized protei 29.6 36 0.00093 13.9 4.1 16 371-386 312-327 (354)
228 TIGR00380 cobD cobalamin biosy 29.5 33 0.00085 14.2 1.7 32 295-327 249-285 (322)
229 TIGR00368 TIGR00368 Mg chelata 28.9 16 0.00041 16.5 0.0 12 109-120 292-303 (505)
230 smart00450 RHOD Rhodanese Homo 28.7 38 0.00096 13.8 3.4 36 353-391 52-87 (100)
231 PRK06606 branched-chain amino 28.4 38 0.00097 13.8 2.8 35 355-390 202-238 (306)
232 pfam04452 Methyltrans_RNA RNA 28.4 38 0.00097 13.8 2.9 13 40-52 16-28 (225)
233 COG4739 Uncharacterized protei 28.3 38 0.00097 13.8 1.9 47 254-304 115-170 (182)
234 TIGR00274 TIGR00274 glucokinas 27.6 39 0.001 13.7 2.5 43 274-316 108-154 (291)
235 cd01444 GlpE_ST GlpE sulfurtra 27.5 39 0.001 13.7 3.9 37 352-391 51-87 (96)
236 PRK11582 flagella biosynthesis 27.3 32 0.00082 14.3 1.4 20 108-127 32-51 (179)
237 TIGR00118 acolac_lg acetolacta 26.9 14 0.00037 16.8 -0.5 25 204-228 301-327 (593)
238 COG1084 Predicted GTPase [Gene 26.9 41 0.001 13.6 3.7 137 259-413 131-298 (346)
239 TIGR00021 rpiA ribose 5-phosph 26.7 41 0.001 13.6 3.9 40 191-230 133-181 (236)
240 TIGR01009 rpsC_bact ribosomal 26.7 41 0.001 13.6 2.4 80 110-208 78-172 (217)
241 TIGR01811 sdhA_Bsu succinate d 26.5 41 0.001 13.6 3.5 117 25-146 126-276 (620)
242 PRK11545 gntK gluconate kinase 26.3 41 0.0011 13.5 2.3 48 295-342 12-64 (177)
243 smart00228 PDZ Domain present 26.2 42 0.0011 13.5 3.6 40 354-394 44-83 (85)
244 pfam03159 XRN_N XRN 5'-3' exon 25.7 42 0.0011 13.5 2.4 48 360-416 173-220 (236)
245 TIGR03407 urea_ABC_UrtA urea A 25.7 42 0.0011 13.4 9.1 18 421-440 300-317 (359)
246 cd01979 Pchlide_reductase_N Pc 25.5 36 0.00091 14.0 1.3 88 282-390 215-305 (396)
247 PRK02910 light-independent pro 25.3 43 0.0011 13.4 4.1 87 292-386 209-319 (524)
248 TIGR02858 spore_III_AA stage I 25.2 41 0.001 13.6 1.6 66 100-173 9-74 (282)
249 COG4044 Uncharacterized protei 25.1 44 0.0011 13.4 3.1 25 367-391 176-200 (247)
250 cd01558 D-AAT_like D-Alanine a 24.9 44 0.0011 13.4 3.1 35 355-390 184-220 (270)
251 PRK10545 nucleotide excision r 24.9 44 0.0011 13.4 2.3 72 138-215 83-156 (286)
252 cd05213 NAD_bind_Glutamyl_tRNA 24.8 44 0.0011 13.3 6.4 63 353-446 174-237 (311)
253 pfam02073 Peptidase_M29 Thermo 24.7 44 0.0011 13.3 3.5 27 124-150 40-68 (404)
254 COG4992 ArgD Ornithine/acetylo 24.5 44 0.0011 13.3 4.8 104 280-396 232-370 (404)
255 PRK09193 indolepyruvate ferred 24.4 45 0.0011 13.3 5.3 102 330-437 507-613 (1155)
256 PRK07650 4-amino-4-deoxychoris 24.3 45 0.0011 13.3 2.2 35 355-390 187-223 (290)
257 COG5163 NOP7 Protein required 24.3 23 0.00058 15.4 0.1 17 320-336 404-420 (591)
258 pfam00925 GTP_cyclohydro2 GTP 24.0 46 0.0012 13.2 2.3 24 376-400 131-154 (169)
259 cd01525 RHOD_Kc Member of the 23.9 46 0.0012 13.2 3.8 79 295-391 18-96 (105)
260 TIGR02545 ATP_syn_fliI flagell 23.8 42 0.0011 13.5 1.4 29 356-384 246-296 (439)
261 PRK01033 imidazole glycerol ph 23.7 36 0.00091 14.0 1.0 21 219-239 160-180 (253)
262 PRK12778 putative bifunctional 23.7 46 0.0012 13.2 4.1 35 353-391 574-608 (760)
263 COG2861 Uncharacterized protei 23.6 46 0.0012 13.2 4.5 78 304-393 162-240 (250)
264 COG2805 PilT Tfp pilus assembl 23.6 46 0.0012 13.2 1.9 25 405-431 287-311 (353)
265 TIGR00251 TIGR00251 conserved 23.6 46 0.0012 13.2 1.6 11 387-397 32-42 (91)
266 PRK10610 chemotaxis regulatory 23.5 46 0.0012 13.2 4.6 33 357-392 5-37 (129)
267 PRK07914 hypothetical protein; 23.4 47 0.0012 13.2 3.1 25 110-135 96-120 (320)
268 COG0126 Pgk 3-phosphoglycerate 23.2 47 0.0012 13.1 3.3 135 219-390 102-263 (395)
269 PRK11070 ssDNA exonuclease Rec 23.0 47 0.0012 13.1 7.0 37 12-48 68-115 (574)
270 TIGR02860 spore_IV_B stage IV 22.8 41 0.001 13.6 1.2 10 109-118 152-161 (423)
271 PRK07574 formate dehydrogenase 22.8 42 0.0011 13.5 1.3 116 354-481 189-327 (385)
272 COG0588 GpmA Phosphoglycerate 22.7 48 0.0012 13.1 3.7 33 351-387 168-200 (230)
273 TIGR02518 EutH_ACDH acetaldehy 22.6 48 0.0012 13.1 2.5 69 200-286 242-310 (528)
274 TIGR01393 lepA GTP-binding pro 22.4 49 0.0012 13.0 2.0 43 83-132 276-319 (598)
275 cd00408 DHDPS-like Dihydrodipi 22.4 49 0.0012 13.0 8.6 20 337-356 221-240 (281)
276 cd02808 GltS_FMN Glutamate syn 22.3 49 0.0012 13.0 3.3 26 167-192 120-145 (392)
277 PRK07544 branched-chain amino 22.1 49 0.0013 13.0 1.9 34 356-390 201-235 (292)
278 PRK13233 nifH nitrogenase redu 21.9 43 0.0011 13.4 1.2 22 193-214 138-160 (275)
279 TIGR01143 murF UDP-N-acetylmur 21.9 45 0.0011 13.3 1.3 68 304-390 282-358 (462)
280 COG0520 csdA Selenocysteine ly 21.8 50 0.0013 12.9 5.5 54 368-428 340-396 (405)
281 KOG2680 consensus 21.7 50 0.0013 12.9 1.6 10 223-232 183-192 (454)
282 PRK10949 protease 4; Provision 21.7 50 0.0013 12.9 3.3 37 360-396 330-376 (618)
283 PRK13803 bifunctional phosphor 21.6 50 0.0013 12.9 1.5 44 348-395 360-407 (611)
284 pfam02450 LACT Lecithin:choles 21.6 31 0.00079 14.4 0.4 25 393-417 286-310 (382)
285 PRK09314 bifunctional 3,4-dihy 21.6 51 0.0013 12.9 3.0 33 376-408 300-334 (339)
286 TIGR02546 III_secr_ATP type II 21.5 49 0.0013 13.0 1.4 53 266-324 320-382 (430)
287 PRK02145 consensus 21.4 51 0.0013 12.9 2.3 22 218-239 164-185 (257)
288 PRK11713 16S rRNA m3U1498 meth 21.4 51 0.0013 12.9 3.0 13 40-52 31-43 (243)
289 pfam10059 consensus 21.3 51 0.0013 12.9 1.5 48 357-413 2-66 (119)
290 PRK02155 ppnK inorganic polyph 21.2 51 0.0013 12.9 4.8 48 189-236 216-264 (291)
291 TIGR00593 pola DNA polymerase 21.1 25 0.00063 15.1 -0.2 10 171-180 126-135 (1005)
292 TIGR00260 thrC threonine synth 21.1 40 0.001 13.7 0.8 47 286-336 196-249 (423)
293 cd07983 LPLAT_DUF374-like Lyso 21.0 52 0.0013 12.8 3.5 122 138-286 56-188 (189)
294 COG1385 Uncharacterized protei 21.0 52 0.0013 12.8 2.9 15 40-54 33-47 (246)
295 PRK08507 prephenate dehydrogen 21.0 52 0.0013 12.8 3.7 36 351-386 127-162 (275)
296 PRK05319 rplD 50S ribosomal pr 20.8 52 0.0013 12.8 4.2 52 336-390 101-153 (206)
297 PRK12814 putative NADPH-depend 20.5 53 0.0014 12.8 5.4 14 432-445 554-567 (652)
298 pfam09861 DUF2088 Uncharacteri 20.4 53 0.0014 12.7 4.3 44 350-393 46-94 (203)
299 pfam11626 Rap1_C Rap1 - C term 20.3 24 0.00062 15.2 -0.4 29 363-391 37-65 (68)
300 pfam07999 RHSP Retrotransposon 20.3 54 0.0014 12.7 2.4 71 347-417 467-549 (597)
301 PRK05385 phosphoribosylaminoim 20.1 25 0.00065 15.0 -0.3 132 290-446 171-315 (338)
302 PRK11553 alkanesulfonate trans 20.0 54 0.0014 12.7 3.6 13 307-319 248-260 (314)
No 1
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1300.87 Aligned_cols=474 Identities=65% Similarity=1.109 Sum_probs=456.3
Q ss_pred CCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEE
Q ss_conf 25310115659999818533689999998773158870279999799699980487167631504443206876789875
Q gi|254780336|r 7 NYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHV 86 (488)
Q Consensus 7 ~~~~~~~eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHv 86 (488)
+-|++||||||||+|++++++..+|+||++|||||||||||+++|+++++.+|++|+|+++|.+.+.++.++|++|||||
T Consensus 6 ~~d~~~eeCGIfGi~~~~~~a~~~~~gL~aLQHRGQesaGIa~~d~~~i~~~K~~GlV~~vF~~~~~l~~l~G~~gIGHv 85 (480)
T PRK09123 6 DDDTLREECGVFGIFGHPDAAAITALGLHALQHRGQEAAGIVSFDGERFHSERRLGLVGDNFTDADVIARLPGNRAIGHV 85 (480)
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHCCCHHHHHCCCCCEEEEEE
T ss_conf 88973667628999978154999999999975378561149998299899997374201201652356338985889998
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 12226898600278678746997199999655087899999998649824234307898898987302567056899998
Q gi|254780336|r 87 RYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLR 166 (488)
Q Consensus 87 RYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~ 166 (488)
||||+|.++.+|+|||+.+++.|+++|||||||+|+.+||++|+++|..|+++||||+|+|||+++.+.++.+++.++++
T Consensus 86 RYST~G~~~~~n~QP~~~~~~~g~ialahNGnI~N~~eLr~~L~~~G~~F~s~sDTEvIl~lia~~~~~~~~e~i~~a~~ 165 (480)
T PRK09123 86 RYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELVRRGAIFQSTSDTEVILHLIARSRKSSFLDRFIDALR 165 (480)
T ss_pred ECCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 56789998744688758227998689997242468999999999679842237818999999976225778999999998
Q ss_pred HHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 65304399996399799998256654159982695699986120010478741233178707999408984799875307
Q gi|254780336|r 167 HVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKN 246 (488)
Q Consensus 167 ~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~ 246 (488)
+++||||+++|++++||++|||+|+||||||+.++.|++|||||||+.+|++++|||+|||+++|+ ++|..++..+
T Consensus 166 ~i~GaYslvilt~~~l~a~RDp~GiRPL~lGk~~~~yvvASEs~Al~~lg~e~irdv~PGEiv~I~--~~g~~s~~~~-- 241 (480)
T PRK09123 166 QVEGAYSLVALTNKKLIGARDPLGIRPLVLGELDGSYILASETCALDIIGAEFVRDVEPGELVVID--EKGLTSIKPF-- 241 (480)
T ss_pred HCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCEEEEEECCHHHCCCCCEEEEECCCCEEEEEE--CCCEEEEEEC--
T ss_conf 656648999998995999989888763389985998999863002105686599954897499996--8970799966--
Q ss_pred CCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCC
Q ss_conf 76566420000010024743000372899999999999987486567720120012047799999981996001001176
Q gi|254780336|r 247 PSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNH 326 (488)
Q Consensus 247 ~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~ 326 (488)
+..+.++|+|||||||||||+++|++||++|++||+.||+|.|+++|+|+||||||++||+|||++||+||++||+|||
T Consensus 242 -~~~~~~~C~FE~IYFaRpdS~i~g~~Vy~~R~~~G~~LA~e~~~~~DiVi~VPdSg~~aA~gya~~~gip~~~glikn~ 320 (480)
T PRK09123 242 -PPQPSRFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNH 320 (480)
T ss_pred -CCCCCCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHCEEECC
T ss_conf -8877776345665215798103694799999999999960079875527756676446789888763996112253124
Q ss_pred CCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf 53210110644677765320134324553389328974035333338889999985399789999658980588656500
Q gi|254780336|r 327 YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGID 406 (488)
Q Consensus 327 y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid 406 (488)
|+|||||+|+|+.|+.+|++||||++++|+||+|||||||||||||||+||+|||+||||||||||+||||+||||||||
T Consensus 321 yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc~yGID 400 (480)
T PRK09123 321 YVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPTTHPCFYGID 400 (480)
T ss_pred CCCCCCCCCCHHHHHHCCEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 21577438878777637077564033345898299980661536769999999997799889999689985787667436
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 58978885466999889998709977888339899986114666667567320121378766876455674466666530
Q gi|254780336|r 407 IPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDEELSLII 486 (488)
Q Consensus 407 ~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~~~~~~~ 486 (488)
||+++||||++ +++|||+++||||||.|||+|+|++|++....++...+||+|||||+|||+++|++.+.+-+|+++++
T Consensus 401 ~~~~~eLiA~~-~s~eei~~~igaDsL~yls~e~l~~ai~~~~~~~~~~~~C~aCftG~Yp~~~~~~~~e~~~~~~~~~~ 479 (480)
T PRK09123 401 TPERSKLLAAT-HSLEEMAEYIGADSLAFLSIDGLYRAVGEEGRNPAAPQYCDACFTGDYPTGLTDQEGESAPRQLSLLA 479 (480)
T ss_pred CCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 89989985379-99999998869976986569999998546345887666225576684788984300255312233205
No 2
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1283.10 Aligned_cols=472 Identities=47% Similarity=0.790 Sum_probs=450.0
Q ss_pred CCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEE
Q ss_conf 32531011565999981853368999999877315887027999979969998048716763150444320687678987
Q gi|254780336|r 6 NNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGH 85 (488)
Q Consensus 6 ~~~~~~~~eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGH 85 (488)
.+++++||||||||++++++++..+|+||++|||||||||||++++++++..+|++|+|+++|++ ..++.|+|++||||
T Consensus 3 ~~~~~~~eeCGI~Gi~~~~d~~~~~y~GL~~LQHRGQesaGIa~~d~~~~~~~K~~GlV~~vf~~-~~l~~L~G~~gIGH 81 (475)
T PRK07631 3 AEIKGLNEECGVFGIWGHEEAAQITYYGLHSLQHRGQEGAGIVVTDGEKLSAHKGLGLVTEVFQN-GELDKLKGKGAIGH 81 (475)
T ss_pred CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHCCC-CHHHCCCCCEEEEE
T ss_conf 12157776762899998802299999999986247602327999839989999179836553083-50531888689999
Q ss_pred EECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 51222689860027867874699719999965508789999999864982423430789889898730256705689999
Q gi|254780336|r 86 VRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSL 165 (488)
Q Consensus 86 vRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l 165 (488)
|||||+|+++.+|+|||+.++..|+++|||||||+|+.+||++|+++|..|+|+||||+|+|||+++...++.+++++++
T Consensus 82 vRYsT~G~~~~~naQP~~~~~~~g~ialaHNGnI~N~~eLr~~L~~~G~~F~S~sDTEvI~~LI~~~~~~~~~~~i~~a~ 161 (475)
T PRK07631 82 VRYATAGGGGYENVQPLLFRSQNGSLALAHNGNLVNATQLKQQLENQGSIFQTTSDTEVLAHLIKRSGHFTLKEQIKNAL 161 (475)
T ss_pred EECCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 76577899975358998842799979999976547999999999967985433785899999998535898999999999
Q ss_pred HHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 86530439999639979999825665415998269569998612001047874123317870799940898479987530
Q gi|254780336|r 166 RHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245 (488)
Q Consensus 166 ~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~ 245 (488)
++++||||+++|+++++|++|||+|+||||+|+.++.|++|||||||+.+|++++|||+|||+++++ ++|..+..
T Consensus 162 ~~i~GaYSlvil~~~~l~~~RDp~GiRPL~~Gk~~~~~~vASEs~Al~~~g~~~irdv~PGEiv~I~--~~g~~s~~--- 236 (475)
T PRK07631 162 SMLKGAYAFLIMTETEMIVALDPNGLRPLSLGRLGDAYVVASETCAFDVIGATYLREVEPGELLIIN--DEGMKSER--- 236 (475)
T ss_pred HHHCCEEEEEEECCCEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHCCCCEEEEECCCCEEEEEE--CCCEEEEE---
T ss_conf 9612608999962873999999887643699998999999965045424597799816996699997--89568995---
Q ss_pred CCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC
Q ss_conf 77656642000001002474300037289999999999998748656772012001204779999998199600100117
Q gi|254780336|r 246 NPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN 325 (488)
Q Consensus 246 ~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn 325 (488)
..+..+.++|+|||||||||||++||++||++|++||++||++.|+++|+|+||||||++||+|||+++|+||++||+||
T Consensus 237 ~~~~~~~~~C~FEyIYFaRpdS~i~g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPDSg~~aA~gya~~sgip~~~glikn 316 (475)
T PRK07631 237 FSPNINRSICSMEYIYFARPDSNVDGINVHTARKNLGKQLAEEAPVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKN 316 (475)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 37987765550343212688732077069999999999998327987888997899638899999987299545411001
Q ss_pred CCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCE
Q ss_conf 65321011064467776532013432455338932897403533333888999998539978999965898058865650
Q gi|254780336|r 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGI 405 (488)
Q Consensus 326 ~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGi 405 (488)
||+|||||+|+|++|+.+||+||||++++|+||+|||||||||||||||+||+|||+||||||||||+||||+|||||||
T Consensus 317 ~yvgRTFI~p~q~~R~~~v~~Kln~~~~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc~yGI 396 (475)
T PRK07631 317 RYVGRTFIQPSQALREQGVKMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPIAHPCFYGI 396 (475)
T ss_pred CEECCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 30146577975889987442014244200389737997443510641999999999769988999968998578766643
Q ss_pred ECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 05897888546699988999870997788833989998611466666756732012137876687645567446666653
Q gi|254780336|r 406 DIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDEELSLI 485 (488)
Q Consensus 406 d~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~~~~~~ 485 (488)
|||+++||||++ +++|||+++||||||.|||+|+|.+|++. +.+....++|+|||||+|||+++++++..+++++++.
T Consensus 397 D~~~~~eLIA~~-~~~eei~~~igadsL~yls~e~l~~aig~-~~~~~~~~~C~aCftG~YP~~i~~~~~~~~~~~~~~~ 474 (475)
T PRK07631 397 DTSTHEELIASS-HSVEEIRQEIGADSLAFLSVEGLLKGIGR-PYEDPNCGQCLACFTGKYPTEIYQDTVLPHVKECVLT 474 (475)
T ss_pred CCCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCC-CCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 789978986479-99999999859986883169999998577-5568877868767688126788710057889874246
No 3
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1280.52 Aligned_cols=467 Identities=49% Similarity=0.850 Sum_probs=440.7
Q ss_pred CCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEE
Q ss_conf 25310115659999818533689999998773158870279999799699980487167631504443206876789875
Q gi|254780336|r 7 NYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHV 86 (488)
Q Consensus 7 ~~~~~~~eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHv 86 (488)
+.+++||||||||+++.++++..+|+||++|||||||||||++.|+++++.+|++|+|+++|.+..+++.|+|++|||||
T Consensus 4 ~~~~~~eeCGIfGi~~~~~~~~~ly~gL~aLQHRGQeSaGIa~~d~~~i~~~K~~GlV~~vF~~~~~l~~l~G~~gIGHv 83 (484)
T PRK07272 4 EVKSLNEECGVFGIWGHPDAAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDRLTGNAAIGHV 83 (484)
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCHHHHHCCHHHHHCCCCCEEEEEE
T ss_conf 55776767607999888303999999999875477020359998299899991585175642473455327776899996
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 12226898600278678746997199999655087899999998649824234307898898987302567056899998
Q gi|254780336|r 87 RYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLR 166 (488)
Q Consensus 87 RYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~ 166 (488)
||||+|+++.+|+|||+.++..|+++|||||||+|+.+||++|++.|..|+++||||+|+|||++....++.+++.++++
T Consensus 84 RYsT~G~~~~~naQP~~~~~~~g~ialaHNGni~N~~eLr~~L~~~G~~f~s~sDTEvI~~LI~~~~~~~~~~~i~~~~~ 163 (484)
T PRK07272 84 RYATAGSASIENIQPFLYHFHDGQVALCHNGNLTNAKSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGALKEALN 163 (484)
T ss_pred ECCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 34778999743589976306898689988331639999999999769824358819999999986406889999999999
Q ss_pred HHHCCEEEEEEECCEEEEEEECCCCCEEEEEECC-CEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 6530439999639979999825665415998269-569998612001047874123317870799940898479987530
Q gi|254780336|r 167 HVQGAYAMLALTRTKLIATRDPIGIRPLIMGELH-GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245 (488)
Q Consensus 167 ~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~-~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~ 245 (488)
+++||||+++|++++||++|||+|+||||||+.+ +.|++|||||||+++|++++|||+|||+++++ ++|..+. +
T Consensus 164 ~i~GaYSlvil~~~~l~a~RDp~GiRPL~~Gk~~~g~yvvASEs~Al~~ig~~~irdv~PGEiv~i~--~~g~~~~---~ 238 (484)
T PRK07272 164 TVKGGFAYLLLTEDKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEFVRDVQPGEVVVID--DDGIQVD---S 238 (484)
T ss_pred HHCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCEEEEEECHHHHHCCCCEEEEECCCCEEEEEE--CCCEEEE---E
T ss_conf 7257489999859929999899887642899957972999966256424697699843897699995--7965899---6
Q ss_pred CCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC
Q ss_conf 77656642000001002474300037289999999999998748656772012001204779999998199600100117
Q gi|254780336|r 246 NPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN 325 (488)
Q Consensus 246 ~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn 325 (488)
..+..+.++|+|||||||||||+++|++||++|++||+.||++.|+++|+|+||||||++||+|||+++|+||++||+||
T Consensus 239 ~~~~~~~~~C~FEyIYFaRpdS~i~g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPdSg~~aA~Gya~~~gip~~~glikn 318 (484)
T PRK07272 239 YTDETQLAICSMEYIYFARPDSTIHGVNVHTARKRMGKRLAQEFPVDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKN 318 (484)
T ss_pred CCCCCCCCCCEEEEEECCCCCCEECCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCEEEE
T ss_conf 27999887453442111679813878689999999999998357877872500788538999999987299511051450
Q ss_pred CCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCE
Q ss_conf 65321011064467776532013432455338932897403533333888999998539978999965898058865650
Q gi|254780336|r 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGI 405 (488)
Q Consensus 326 ~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGi 405 (488)
||+|||||+|+|++|+.+||+||||++++++||||||||||||||||+|+||+|||+||||||||||+||||+|||||||
T Consensus 319 ~yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~rissPpi~~pc~yGI 398 (484)
T PRK07272 319 QYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVKLLKEAGAKEVHVRIASPELKYPCFYGI 398 (484)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 31134578996788887363401025455379759998254112675999999999779988999968998578755656
Q ss_pred ECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCC--HHHHHHHH
Q ss_conf 0589788854669998899987099778883398999861146666675673201213787668764--55674466
Q gi|254780336|r 406 DIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD--KQSQHNDE 480 (488)
Q Consensus 406 d~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~--~~~~~~~~ 480 (488)
|||+++||||++ +++|||+++||||||.|||+|+|.+||+ .+.+.+..+||+|||||+|||+++| +++...++
T Consensus 399 D~~t~~eLIA~~-~~~eei~~~igadsL~ylsle~l~~aig-~~~~~~~~~~C~aCftG~Yp~~~~d~~~~~~~~l~ 473 (484)
T PRK07272 399 DIQTRAELISAN-HSVEEICDIIGADSLTYLSVDGLIESIG-LDTDAPNGGLCVAYFDGDYPTPLYDYEEEYLASLE 473 (484)
T ss_pred CCCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 899989996189-9999999885997588436999999857-76688877814656077067899883699999999
No 4
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1280.95 Aligned_cols=464 Identities=45% Similarity=0.806 Sum_probs=436.3
Q ss_pred CCCCCCCHHHCCEEEEEECC-CCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEE
Q ss_conf 73325310115659999818-53368999999877315887027999979969998048716763150444320687678
Q gi|254780336|r 4 KRNNYKQINEKCGVFGILGH-PDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMA 82 (488)
Q Consensus 4 ~~~~~~~~~~eCGI~Gi~~~-~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~ 82 (488)
+-.+-|++||||||||+++. ++++..+|+||++|||||||||||+++|+++++.+|++|+|+++|++ +.++.|+|++|
T Consensus 18 ~~~~~dk~~eeCGVfGi~s~~~~va~~~y~GL~aLQHRGQesaGIav~dg~~i~~~K~~GlV~~vF~~-~~l~~L~G~~g 96 (495)
T PRK07349 18 EPIRPDKPEEACGVFGIYAPGEEVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDE-DILEELPGDLA 96 (495)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCHHHCCCH-HHHHHCCCCEE
T ss_conf 99999980646808999759935689999999987605715005999859989999089715330696-46965899788
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CCCCHH
Q ss_conf 987512226898600278678746997199999655087899999998649824234307898898987302--567056
Q gi|254780336|r 83 IGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK--NGSCDR 160 (488)
Q Consensus 83 IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~--~~~~e~ 160 (488)
||||||||+|+++.+|+|||++++++|.+||||||||+|+.+||++|+++|..|+|+||||+|+|||+++.. .++.++
T Consensus 97 IGHvRYsT~G~~~~~NaQP~~~~~~~G~ialaHNGnL~N~~eLr~~L~~~G~~F~s~sDsEvi~~lIa~~~~~~~d~~~a 176 (495)
T PRK07349 97 VGHTRYSTTGSSRVANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEA 176 (495)
T ss_pred EEECCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 75621588999975317974886799979999943696999999999967997656760899999999987538989999
Q ss_pred HHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCE----EEEEECCHHCCCCCCCEEEECCCCEEEEEEECCC
Q ss_conf 899998653043999963997999982566541599826956----9998612001047874123317870799940898
Q gi|254780336|r 161 FIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGK----PIFCSETCALEITGAKYIRDVENGETIVCELQED 236 (488)
Q Consensus 161 i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~----~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~ 236 (488)
+++++++++||||+++|++++||++|||+|+||||+|+.++. |++|||||||+.+|++++|||+|||+++|+ ++
T Consensus 177 i~~~~~~i~GAYSlvilt~~~lia~RDP~GiRPL~lG~~~~~~~~~yvvASEs~Ald~lg~e~iRdv~PGEiv~I~--~~ 254 (495)
T PRK07349 177 AISAFRLCQGAFSLVIGTPEGLMGVRDPNGIRPLVIGTLEENGPGRYVLASETCALDIIGADYLRDVEPGELVWIT--EG 254 (495)
T ss_pred HHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCEEEEEECHHHHHCCCCEEEECCCCCEEEEEE--CC
T ss_conf 9999986075079999749869999898887523899954888857999987464204496588638998599981--79
Q ss_pred CEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 47998753077656642000001002474300037289999999999998748656772012001204779999998199
Q gi|254780336|r 237 GFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGI 316 (488)
Q Consensus 237 g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gi 316 (488)
|..+... .+....++|+|||||||||||+++|++||++|++||++||+|.|+++|+|+||||||++||+|||++||+
T Consensus 255 g~~s~~~---~~~~~~~~C~FEyIYFaRPDS~i~g~~Vy~~R~~~G~~LA~e~~v~~DiVi~VPdSg~~aA~gya~~sgi 331 (495)
T PRK07349 255 GLESFRW---AEKPQRKLCVFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDSGIPAAIGFSQASGI 331 (495)
T ss_pred CEEEEEE---CCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 6368861---5888765430112220477512478189999999999872606888863897899629999999997399
Q ss_pred CEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 60010011765321011064467776532013432455338932897403533333888999998539978999965898
Q gi|254780336|r 317 PFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 317 p~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
||++||+||||+|||||+|+|++|+.+||+||||++++|+||||||||||||||||+|+||+|||+||||||||||+|||
T Consensus 332 py~~glikn~YvgRTFI~p~q~~R~~~vr~Kln~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPp 411 (495)
T PRK07349 332 PYAEGLIKNRYVGRTFIQPTQAMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPP 411 (495)
T ss_pred CCHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEECHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 71220120454465551875888763201320136788589859998266055746999999999769988999968998
Q ss_pred CCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHH
Q ss_conf 05886565005897888546699988999870997788833989998611466666756732012137876687645567
Q gi|254780336|r 397 VLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQ 476 (488)
Q Consensus 397 i~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~ 476 (488)
|+||||||||||+++||||++ +++|||+++||||||.|||+|+|.+|++. +..+||+|||||+|||+++|+...
T Consensus 412 i~~pC~yGID~pt~~eLIA~~-~s~eeI~~~igaDSL~ylsle~L~~ai~~-----~~~~~C~aCftG~YP~~i~~~~~~ 485 (495)
T PRK07349 412 VTHPCFYGIDTDTQDQLIAAT-KSVEEIAEQIGVDSLAYLSWEGMLEATGE-----DPNSFCSACFTGDYPIPIPEQVKR 485 (495)
T ss_pred CCCCCCCCCCCCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCC-----CCCCEEEEEECCCCCCCCCCHHCC
T ss_conf 577775755789979997579-99999999859986882269999998679-----967731068589668888622213
Q ss_pred HHH
Q ss_conf 446
Q gi|254780336|r 477 HND 479 (488)
Q Consensus 477 ~~~ 479 (488)
.++
T Consensus 486 ~~~ 488 (495)
T PRK07349 486 SKL 488 (495)
T ss_pred CCE
T ss_conf 516
No 5
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1277.89 Aligned_cols=464 Identities=49% Similarity=0.819 Sum_probs=441.1
Q ss_pred CCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEE
Q ss_conf 25310115659999818533689999998773158870279999799699980487167631504443206876789875
Q gi|254780336|r 7 NYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHV 86 (488)
Q Consensus 7 ~~~~~~~eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHv 86 (488)
+++++||||||||++++++++..+|+||++|||||||||||++.|++.+..+|++|+|+++|++ ..++.|+|++|||||
T Consensus 4 ~~~~~~eeCGI~Gi~~~~~~~~~~~~gL~~LQHRGqeSaGIa~~d~~~i~~~K~~GlV~~vf~~-~~l~~l~G~~gIGHv 82 (471)
T PRK06781 4 EIKGLNEECGVFGIWGHENAAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSR-GELEGLNGKSAIGHV 82 (471)
T ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHHCC-CHHHCCCCCEEEEEE
T ss_conf 2267776753899988812399999999987357513306999879879998078607564071-415418987899997
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 12226898600278678746997199999655087899999998649824234307898898987302567056899998
Q gi|254780336|r 87 RYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLR 166 (488)
Q Consensus 87 RYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~ 166 (488)
||||+|+++.+|+|||++++..+++++||||||+|+.+||++|+++|..|+|+||||+|+|||+++...++.++++++++
T Consensus 83 RYsT~G~~~~~naQP~~~~~~~g~ialaHNGnl~N~~eLr~~L~~~G~~f~s~sDTEvI~~lia~~~~~~~~~~i~~~~~ 162 (471)
T PRK06781 83 RYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALN 162 (471)
T ss_pred ECCCCCCCCCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 24789999743589988306898899999504519999999999759867667709999999986234689999999998
Q ss_pred HHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 65304399996399799998256654159982695699986120010478741233178707999408984799875307
Q gi|254780336|r 167 HVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKN 246 (488)
Q Consensus 167 ~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~ 246 (488)
+++||||+++++++++|++|||+|+||||||+.++.|++|||||||+++|++++|||+|||+++|+ ++|..+. +.
T Consensus 163 ~i~GAYSlvil~~~~l~a~RDp~GiRPL~lGk~~~~~vvASEs~Al~~lg~~~irdv~PGEiv~I~--~~g~~~~---~~ 237 (471)
T PRK06781 163 KVKGAFAYLLLTGNEMIVALDPNGFRPLSIGKMGDAYVVASETCAFDVVGATYIRDVEPGELLIIN--DEGIHVD---RF 237 (471)
T ss_pred HCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCEEEEEECCHHHHCCCCEEEEECCCCEEEEEE--CCCEEEE---EC
T ss_conf 657718999998997999989887751499970998999965135422397699816996599994--8957899---64
Q ss_pred CCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCC
Q ss_conf 76566420000010024743000372899999999999987486567720120012047799999981996001001176
Q gi|254780336|r 247 PSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNH 326 (488)
Q Consensus 247 ~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~ 326 (488)
.+..+.++|+|||||||||||+++|++||++|++||+.||++.|+++|+|+||||||++||+|||++||+||++||+|||
T Consensus 238 ~~~~~~~~C~FEyIYFaRpdS~~~g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPdSg~~aA~gya~~~gip~~~glikn~ 317 (471)
T PRK06781 238 TNEVDHAICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNR 317 (471)
T ss_pred CCCCCCCCEEEEEHHCCCCCEEECCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHCEEECC
T ss_conf 89877763387520105887016880899999999999862179888989978987388999999980997444301002
Q ss_pred CCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf 53210110644677765320134324553389328974035333338889999985399789999658980588656500
Q gi|254780336|r 327 YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGID 406 (488)
Q Consensus 327 y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid 406 (488)
|+|||||+|+|++|+.+|++||||++++|+||+|||||||||||||||+||+|||+||||||||||+||||+||||||||
T Consensus 318 yvgRTFI~p~q~~R~~~v~~Kln~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~Pc~yGID 397 (471)
T PRK06781 318 YVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKYPCFYGID 397 (471)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 01443538758899876530110410004898899981660557569999999997799889999689985787666547
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf 589788854669998899987099778883398999861146666675673201213787668764556744
Q gi|254780336|r 407 IPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHN 478 (488)
Q Consensus 407 ~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~ 478 (488)
||+++||||++ +++|||+++||||||.|||+|+|.+|++ .+.+...++||+|||||+|||+++|...+..
T Consensus 398 ~p~~~eLIA~~-~~~eei~~~igaDsL~yls~e~l~~ai~-~~~~~~~~~~C~aCftG~YP~~~~d~~~~~~ 467 (471)
T PRK06781 398 IQTRKELIAAN-HTVEEIREMIGADSLTFLSEDGLVDAIG-RPYEGKYGGLCMAYFNGDYPTALYDYEQELL 467 (471)
T ss_pred CCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCCCCCCCHHHH
T ss_conf 89979986279-9999999885998698307999999857-8666766782673548804668878688889
No 6
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1269.14 Aligned_cols=466 Identities=49% Similarity=0.822 Sum_probs=441.5
Q ss_pred CCCCCCCCCCHHHCCEEEEEECCC--CHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCC
Q ss_conf 977733253101156599998185--336899999987731588702799997996999804871676315044432068
Q gi|254780336|r 1 MCSKRNNYKQINEKCGVFGILGHP--DAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLP 78 (488)
Q Consensus 1 ~~~~~~~~~~~~~eCGI~Gi~~~~--~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~ 78 (488)
|..|. +-|++||||||||+++.+ +++..+|+||++|||||||||||+++++++++++|++|+|+++|++ +.++.|+
T Consensus 5 ~~~~~-~~d~~~eeCGI~GI~~~~~~~~~~~~y~GL~aLQHRGQesaGIav~dg~~i~~~K~~GlV~dvF~~-~~l~~l~ 82 (472)
T PRK05793 5 MPMDL-EGDKFKEECGVFGVFSNKEIDVASITYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSK-EKLKGLK 82 (472)
T ss_pred CCCCC-CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCHHHHCCH-HHHHCCC
T ss_conf 88887-789656676389999688440699999999986367877578999869989999589867674182-1474288
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 76789875122268986002786787469971999996550878999999986498242343078988989873025670
Q gi|254780336|r 79 GNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSC 158 (488)
Q Consensus 79 G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~ 158 (488)
|++|||||||||+|+++.+|+|||+.+++.|+++|||||||+|+.+||++|+++|..|+|+||||+|+|||+++...++.
T Consensus 83 G~~gIGHvRYsT~G~~~~~naQP~~~~~~~g~ialaHNGni~N~~eLr~~L~~~G~~F~s~sDTEvI~~Lia~~~~~~~~ 162 (472)
T PRK05793 83 GNSAIGHVRYSTTGASKLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGQIFQTSIDSEVILNLIARSAKKGLE 162 (472)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 73899995256789997434788574389998999996420699999999996088667677078999999875128999
Q ss_pred HHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCE
Q ss_conf 56899998653043999963997999982566541599826956999861200104787412331787079994089847
Q gi|254780336|r 159 DRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGF 238 (488)
Q Consensus 159 e~i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~ 238 (488)
+++++++++|+||||+++|+++++|++|||+|+||||||+.++.|++|||||||+++|++++|||+|||+++|+ ++|.
T Consensus 163 ~~i~~~~~~i~GaYslvil~~~~l~a~RDp~GiRPL~~G~~~~~~vvASEs~Al~~lg~~~irdv~PGEiv~I~--~~g~ 240 (472)
T PRK05793 163 KAVVDAIQAIKGSYALVILTEDKLIGVRDPHGIRPLCLGKIEDGYILSSESCALDTIGAEFVRDIEPGEIVIID--EDGI 240 (472)
T ss_pred HHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCEEEEEE--CCCC
T ss_conf 99999997466627999987997999978888762599872768999844300014386699816997499995--8970
Q ss_pred EEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 99875307765664200000100247430003728999999999999874865677201200120477999999819960
Q gi|254780336|r 239 ISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPF 318 (488)
Q Consensus 239 ~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~ 318 (488)
.++.. .+..+.++|+|||||||||||++||++||++|++||++||+|.|+++|+|+||||||++||+|||++||+||
T Consensus 241 ~s~~~---~~~~~~~~C~FE~IYFaRpdS~i~g~~Vy~~R~~lG~~LA~e~~~~~DvV~~VPdSg~~aA~gya~~sgip~ 317 (472)
T PRK05793 241 KSIKF---SEKTKCQTCAFEYIYFARPDSVIDGISVYESRVRAGEQLYKEYPVDADIVIGVPDSGIPAAIGYAKASGIPY 317 (472)
T ss_pred EEEEE---CCCCCCCCCEEEEEECCCCCCEECCEEHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCH
T ss_conf 79840---588877665376520138973047708999999999998735788888798179975999999998619943
Q ss_pred EHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 01001176532101106446777653201343245533893289740353333388899999853997899996589805
Q gi|254780336|r 319 EQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 319 ~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
++||+||||+|||||+|+|++|+.+|++||||++++|+||||||||||||||||+|+||+|||+||||||||||+||||+
T Consensus 318 ~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~~~~~v~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGakeVh~ri~sPpi~ 397 (472)
T PRK05793 318 GIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTTSKRLVESLRRAGAKEVHFRVSSPPVK 397 (472)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 44012205215557688677897514623232021006986999807705576799999999977999899996899968
Q ss_pred CCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf 88656500589788854669998899987099778883398999861146666675673201213787668764556744
Q gi|254780336|r 399 YPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHN 478 (488)
Q Consensus 399 ~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~ 478 (488)
||||||||||+++||||++ +++||||++||||||.|||+|+|.+|+++ ..+||++||||+|||+++++..+..
T Consensus 398 ~pc~yGID~~~~~eLiA~~-~~~eei~~~igadsL~yls~e~l~~ai~~------~~~~C~aCftG~YP~~~~~~~~~~~ 470 (472)
T PRK05793 398 YPCYFGIDTPYRKELIAAN-MSVEEIREMIGADSLGYLSIEGLLESLNG------DKGFCLGCFNGVYPVSAPIEMPKDL 470 (472)
T ss_pred CCCCCCCCCCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCC------CCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 8766655789989997579-99999999859986883079999998488------9886437718956898985000332
Q ss_pred HH
Q ss_conf 66
Q gi|254780336|r 479 DE 480 (488)
Q Consensus 479 ~~ 480 (488)
+|
T Consensus 471 ~e 472 (472)
T PRK05793 471 LE 472 (472)
T ss_pred CC
T ss_conf 39
No 7
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=1270.00 Aligned_cols=463 Identities=53% Similarity=0.881 Sum_probs=440.3
Q ss_pred HHHCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEEC
Q ss_conf 011565999981853--368999999877315887027999979969998048716763150444320687678987512
Q gi|254780336|r 11 INEKCGVFGILGHPD--AATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRY 88 (488)
Q Consensus 11 ~~~eCGI~Gi~~~~~--~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRY 88 (488)
++|||||||+|+.++ ++..+|+||++|||||||||||+++|+++++++|++|||+|+|++.+....++|+++||||||
T Consensus 1 ~~e~CGV~Gi~~~~~~~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRY 80 (470)
T COG0034 1 PREMCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRY 80 (470)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHCCCHHHHHHCCCCCEEEEEEE
T ss_conf 96410489996477665679999999987617853133899769557998447501221271656641467612567640
Q ss_pred CCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q ss_conf 226898600278678746997199999655087899999998649824234307898898987302-5670568999986
Q gi|254780336|r 89 STTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK-NGSCDRFIDSLRH 167 (488)
Q Consensus 89 sT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~-~~~~e~i~~~l~~ 167 (488)
||+|+++..|+|||+++++.|.++|||||||+|..+||++|+++|..|+++||||+|+|+|+++.. .++.+++++++++
T Consensus 81 sTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~ 160 (470)
T COG0034 81 STAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRR 160 (470)
T ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 47888653005544893699858999657536889999999864965237860899999997440202489999999864
Q ss_pred HHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCE-EEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 53043999963997999982566541599826956-99986120010478741233178707999408984799875307
Q gi|254780336|r 168 VQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGK-PIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKN 246 (488)
Q Consensus 168 l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~-~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~ 246 (488)
++|+||+++|++++|+++|||+|+|||++|+.+++ |++|||||||+.+|++++|||+|||+++++++++|..+....
T Consensus 161 v~G~ys~v~~~~~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~-- 238 (470)
T COG0034 161 VKGAYALVALIKDGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVA-- 238 (470)
T ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCEEEEECHHHHHCCCCEEEEECCCCEEEEEEECCCEEEEEECC--
T ss_conf 677579999987808999789997663441117987899943032211360699943895389998369626998514--
Q ss_pred CCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCC
Q ss_conf 76566420000010024743000372899999999999987486567720120012047799999981996001001176
Q gi|254780336|r 247 PSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNH 326 (488)
Q Consensus 247 ~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~ 326 (488)
+..+.++|+|||||||||||++||+|||++|++||++||+|.|+++|+|+||||||++||+|||++||+||++||+|||
T Consensus 239 -~~~~~~~C~fEyVYFARPDS~Idg~sVy~~R~~mG~~La~e~~~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNr 317 (470)
T COG0034 239 -EPPRRAPCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNR 317 (470)
T ss_pred -CCCCCCCCEEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCC
T ss_conf -7888864448899850674224885699999999999987587336579834988768999999983996555521023
Q ss_pred CCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf 53210110644677765320134324553389328974035333338889999985399789999658980588656500
Q gi|254780336|r 327 YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGID 406 (488)
Q Consensus 327 y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid 406 (488)
|+|||||||+|++|+.+||+||||++++++||||+|||||||||||||+||+|||+|||||||||||||||+||||||||
T Consensus 318 YvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID 397 (470)
T COG0034 318 YVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGID 397 (470)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 24346668867887750303037017885897699972651457669999999997188788998428975677866457
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 5897888546699988999870997788833989998611466666756732012137876687645567446666
Q gi|254780336|r 407 IPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDEEL 482 (488)
Q Consensus 407 ~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~~~ 482 (488)
|||++||||++ +++|||++.||||||.|||+|+|.+|++.. +.+||++||||+|||+++|++++...+..
T Consensus 398 ~pt~~eLIA~~-~~~eeI~~~IgaDSL~yLslegL~~aig~~-----~~~~c~~cFtG~Yp~~~~~~~~~~~~~~~ 467 (470)
T COG0034 398 MPTREELIAAN-RTVEEIRKAIGADSLAYLSLEGLIKAIGRD-----NNDFCLACFTGEYPTGLPDEEYLDKLELE 467 (470)
T ss_pred CCCHHHHHHCC-CCHHHHHHHHCCCCEEEECHHHHHHHHCCC-----CCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 89989996478-988999988487704642499999996798-----66645677647666678627777766664
No 8
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP . 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=100.00 E-value=0 Score=1278.43 Aligned_cols=444 Identities=48% Similarity=0.846 Sum_probs=415.1
Q ss_pred CEEEEEECCCCHH--HHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 6599998185336--89999998773158870279999799699980487167631504443206876789875122268
Q gi|254780336|r 15 CGVFGILGHPDAA--TLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTG 92 (488)
Q Consensus 15 CGI~Gi~~~~~~~--~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G 92 (488)
|||||++++.+++ ..+||||++||||||||||+++.|+++++.+|++|||+|||++ +.++.|+|+.++|||||||+|
T Consensus 1 CGV~G~~~~~~~~~~~~~YygL~aLQHRGQEsAG~~~~dg~~~~~~~~~GLV~dVF~~-~~l~~L~G~~~~GHVRYSTaG 79 (467)
T TIGR01134 1 CGVFGVVSQEEVAGAELTYYGLYALQHRGQESAGVTVSDGNKTRLHKGNGLVSDVFNE-ETLARLKGNVGAGHVRYSTAG 79 (467)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCEEHCCCCH-HHHHHHCCCEEEEEECCCCCC
T ss_conf 9478524660012555788998743210405114797369789999618500200580-248863466034553373248
Q ss_pred CCCC-CCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHH--------HC-CCCCCHH
Q ss_conf 9860-0278678746997199999655087899999998649--824234307898898987--------30-2567056
Q gi|254780336|r 93 DQII-RNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG--AIFQSTSDTEVILHLIAR--------SQ-KNGSCDR 160 (488)
Q Consensus 93 ~~~~-~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g--~~f~s~sDTEvI~~Li~~--------~~-~~~~~e~ 160 (488)
++.. +|+|||+++++.|.+++||||||+|..+||++|+++| ..|+|+|||||+++|+++ .. +.+..+.
T Consensus 80 ss~~~~naQPf~v~~~~Gg~~lAHNGNLvN~~eLr~~l~~~G~~~~F~t~~DsEV~~~l~~~e~~~~~~l~~~~~~~~~~ 159 (467)
T TIGR01134 80 SSGSSENAQPFVVSSPYGGLALAHNGNLVNADELRRELEEEGDRRHFNTTSDSEVLLNLLAHELDVQNKLESDKDDLFDA 159 (467)
T ss_pred CCCCCCCCCCCEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 88743222455652267765689878721259999999837984425648708999999961373111346431478999
Q ss_pred HHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCE---EEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCC
Q ss_conf 899998653043999963997999982566541599826956---99986120010478741233178707999408984
Q gi|254780336|r 161 FIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGK---PIFCSETCALEITGAKYIRDVENGETIVCELQEDG 237 (488)
Q Consensus 161 i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~---~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g 237 (488)
+..++++++|||||++|.+++|+++|||+|+|||++|+.+++ |++|||||||+++|++++|||+|||++++ +++|
T Consensus 160 ~~~~~~~~~GAY~lv~m~~~~l~a~RDP~G~RPLvlG~~~~g~~~y~vASE~cAld~~g~~~~RDV~PGE~v~~--~~~g 237 (467)
T TIGR01134 160 VAEVLERVRGAYALVAMGEDGLVAVRDPHGVRPLVLGRLGDGGTEYVVASESCALDVLGAEFVRDVEPGEVVVT--FDGG 237 (467)
T ss_pred HHHHHHHCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCEEEECCCCEEEEE--CCCC
T ss_conf 99998544743799997277079998886767610021357841037885027864204100330488359998--1895
Q ss_pred E-EEEEEEECCCCCC-CCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHH--HH
Q ss_conf 7-9987530776566-42000001002474300037289999999999998748--65677201200120477999--99
Q gi|254780336|r 238 F-ISIDSYKNPSTSP-ERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKES--PVIADIVVPIPDGGVPAAIG--YA 311 (488)
Q Consensus 238 ~-~~i~~~~~~~~~~-~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~--~~~~DiV~~VPdsg~~aA~g--ya 311 (488)
. .+.. ..+..+ .++|+|||||||||||+|||.|||.+|++||++|||+. |+++|+|+||||||++||+| ||
T Consensus 238 ~~~~~~---~~~~~~~~a~C~FEYVYFARPDS~lDG~sVy~aR~~mG~~La~~~~~pveaDvVvPVPDSG~~aA~G~Afa 314 (467)
T TIGR01134 238 KELSTR---LCERRPRLAPCVFEYVYFARPDSVLDGSSVYYARVRMGEELAEESREPVEADVVVPVPDSGRPAALGLAFA 314 (467)
T ss_pred EEEEEE---ECCCCCCCCCEEEEEEECCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 588765---30578887743688883268854015724877899999999997137888763328888860589999999
Q ss_pred HHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98199600100117653210110644677765320134324553389328974035333338889999985399789999
Q gi|254780336|r 312 KESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 312 ~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
++||+||.||||||||+|||||||+|++|+.+||+||||++.+++||||||||||||||||||+||+|||+|||+|||||
T Consensus 315 ~~sG~PY~EGl~kNRYVGRTF~~P~Q~~R~~~Vr~kLnP~r~~~~GkrVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~r 394 (467)
T TIGR01134 315 QESGIPYREGLVKNRYVGRTFMMPTQELRELSVRLKLNPVRSVVEGKRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVR 394 (467)
T ss_pred HHHCCCCHHCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 87088702555662430101348887898732112104430333697589994241207137899999987298389876
Q ss_pred ECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 6589805886565005897888546699988999870997788833989998611466666756732012137876
Q gi|254780336|r 392 VASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467 (488)
Q Consensus 392 i~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp 467 (488)
|||||+++||||||||||++||||++ +++||+++.+|||||.|||+|+|.+|+. . .+.+..+||+|||||+||
T Consensus 395 iasPP~~~PC~YGiDmpt~~EL~A~~-~~~~e~~~~~GADsL~YLSlegL~~a~~-R-~~~~~~~~C~aCf~G~YP 467 (467)
T TIGR01134 395 IASPPVRYPCYYGIDMPTREELAAAR-HTVEEIRREIGADSLAYLSLEGLVAAVG-R-AGNPESDLCLACFTGEYP 467 (467)
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHHHCCCCEEEECCHHHHHHHHH-H-CCCCCCCCEEEEECCCCC
T ss_conf 25888886583335375389873187-7689887660775135358899999853-1-047766621453158899
No 9
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1252.38 Aligned_cols=464 Identities=41% Similarity=0.694 Sum_probs=438.3
Q ss_pred CCCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEE
Q ss_conf 77332531011565999981853368999999877315887027999979969998048716763150444320687678
Q gi|254780336|r 3 SKRNNYKQINEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMA 82 (488)
Q Consensus 3 ~~~~~~~~~~~eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~ 82 (488)
++-.+-|++||||||||++++.+++..+|+||++|||||||||||+++|++++.++|++|+|+++|++. .+.++|++|
T Consensus 8 ~~~~~~~k~~eeCGI~Gi~~~~~~~~~~~~gL~aLQHRGQESaGIa~~dg~~i~~~K~~GlV~~vf~~~--~~~l~G~~g 85 (474)
T PRK06388 8 SDPITGQKPSEDCAVVGFKGGINAYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPA--TDPIKGIVG 85 (474)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHCEEEEECCCEEEEEECCCCHHHHHCHH--HHCCCCCEE
T ss_conf 998889983757638999898448999999999977235424479998399899992696989954202--104898788
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHH
Q ss_conf 98751222689860027867874699719999965508789999999864982423430789889898730-25670568
Q gi|254780336|r 83 IGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQ-KNGSCDRF 161 (488)
Q Consensus 83 IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~-~~~~~e~i 161 (488)
||||||||+|+++.+|+|||+++++.|.+++||||||+|+.+||++|+.+|..|+++||||+|+|+|+++. +.++.+++
T Consensus 86 IGHvRYsT~G~~~~~naQP~~~~~~~g~ialaHNGNL~N~~eLr~eL~~~G~~f~s~sDtEvil~~ia~~~~~~~~~~~i 165 (474)
T PRK06388 86 VGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGF 165 (474)
T ss_pred EEECCCCCCCCCCCCCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 73677777999962258984755899729999840256999999778747976666671999999999860216999999
Q ss_pred HHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEE
Q ss_conf 99998653043999963997999982566541599826956999861200104787412331787079994089847998
Q gi|254780336|r 162 IDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISI 241 (488)
Q Consensus 162 ~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i 241 (488)
++++++++||||+++|++++||++|||+|+||||||+.+++|++|||||||+.+|++++|||+|||+++|+ ++|..++
T Consensus 166 ~~~~~~~~GaYslv~l~~~~l~~~RDp~GiRPL~~Gk~~~~~vvASEs~Al~~lg~~~irdV~PGEiv~I~--~~g~~s~ 243 (474)
T PRK06388 166 ERSMERLRGAYACALMINDRLYAIRDPNGIRPLVLGKNFDGYIIASESCAIDALSGTTIKNVEPGEVVEVF--DNGYKTI 243 (474)
T ss_pred HHHHHHCCCEEEEEEEECCEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHCCCEEEECCCCCEEEEEC--CCCCEEE
T ss_conf 99998567628999975991999989887742179980887899952566553286274448992499972--8983699
Q ss_pred EEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHH
Q ss_conf 75307765664200000100247430003728999999999999874865677201200120477999999819960010
Q gi|254780336|r 242 DSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQG 321 (488)
Q Consensus 242 ~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~ 321 (488)
.. .+..+.++|+|||||||||||++||++||++|++||++||++.|+++|+|+||||||++||+|||++||+||++|
T Consensus 244 ~~---~~~~~~~~C~FEyIYFaRpdS~~~g~~Vy~~R~~lG~~LA~e~~~~~DiVi~VPdSg~~aa~gya~~sgip~~~g 320 (474)
T PRK06388 244 FK---LDGDKVAHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSGRSQAIGFSMASGIPYTEG 320 (474)
T ss_pred EE---CCCCCCCCCEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHC
T ss_conf 96---899986654555023238873028818999999999998634798888899578861999999998659941100
Q ss_pred EECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 01176532101106446777653201343245533893289740353333388899999853997899996589805886
Q gi|254780336|r 322 IIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPD 401 (488)
Q Consensus 322 lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc 401 (488)
|+||||+|||||+|+|+.|+.+||+||||++++|+||+|||||||||||||+|+||+|||+||||||||||+||||+|||
T Consensus 321 likn~y~gRTFI~p~q~~R~~~v~~Kln~i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC 400 (474)
T PRK06388 321 LIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPC 400 (474)
T ss_pred EEECCCCCCCCCCCCHHHHHHCCCEEEEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 56535447652388677787444266665024417988999816616566799999999977998899997899967886
Q ss_pred CCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 565005897888546699988999870997788833989998611466666756732012137876687645567446
Q gi|254780336|r 402 FYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHND 479 (488)
Q Consensus 402 ~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~ 479 (488)
|||||||+++||||++ +++|||+++||||||.|||+|+|.+|++. +..++|++||||+||++++++..+.-.
T Consensus 401 ~yGID~p~~~eLiA~~-~~~eei~~~igaDsL~yls~e~l~~a~g~-----~~~~~C~aCftG~YP~~i~~~~~~~~~ 472 (474)
T PRK06388 401 YFGVDMKTKDQFIARG-KTDEEINNEIGADSLAFLSIDGLKQAIGI-----KENNLCLGCLTGIYPIDISKKLAEKIT 472 (474)
T ss_pred CCCCCCCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCC-----CCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 6623789979996579-99999999859986893279999998689-----988840165488378878978976764
No 10
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1239.11 Aligned_cols=461 Identities=41% Similarity=0.692 Sum_probs=423.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 56599998185336899999987731588702799997996999804871676315044432068767898751222689
Q gi|254780336|r 14 KCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488)
Q Consensus 14 eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488)
||||||++++++++..+|+||++|||||||||||+++++++++++|++|+|+++|+. ..++.|+|++|||||||||+|+
T Consensus 1 MCGIfGi~~~~~~~~~l~~gL~~LQHRGqesaGIa~~d~~~i~~~K~~GlV~~vf~~-~~l~~l~G~~gIGHvRYsT~G~ 79 (503)
T PRK09246 1 MCGIVGIVGNSPVNQLIYDALTVLQHRGQDAAGIVTIDGGRFRLRKANGLVRDVFRT-RHMRRLQGNMGIGHVRYPTAGS 79 (503)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHHCC-CCHHCCCCCEEEEEECCCCCCC
T ss_conf 976999986743899999999986156546447999959989999479845333060-1031288868997802656899
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCCC---------CCCHHHHH
Q ss_conf 86002786787469971999996550878999999986498-242343078988989873025---------67056899
Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA-IFQSTSDTEVILHLIARSQKN---------GSCDRFID 163 (488)
Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~-~f~s~sDTEvI~~Li~~~~~~---------~~~e~i~~ 163 (488)
++.+|+|||+++++.| +++||||||+|+.+||++|.+.|. +|+|+||||+|++||++.... ++.+++.+
T Consensus 80 ~s~~NaQP~~~~~~~g-ialaHNGnI~N~~eLr~~L~~~~~~~~~t~sDsEvil~lia~~l~~~~~~~~~~~~i~~al~~ 158 (503)
T PRK09246 80 SSSAEAQPFYVNSPYG-ITLAHNGNLTNAEELRKELFEIDRRHINTTSDSEVLLNVFAHELQKSRGLPLTPEDIFAAVAA 158 (503)
T ss_pred CCCCCCCCEEECCCCC-EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9742589706468887-899984443789999999986657654678719999999999876404568987899999999
Q ss_pred HHHHHHCCEEEEEEE-CCEEEEEEECCCCCEEEEEECCCE----EEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCE
Q ss_conf 998653043999963-997999982566541599826956----999861200104787412331787079994089847
Q gi|254780336|r 164 SLRHVQGAYAMLALT-RTKLIATRDPIGIRPLIMGELHGK----PIFCSETCALEITGAKYIRDVENGETIVCELQEDGF 238 (488)
Q Consensus 164 ~l~~l~Gayslv~l~-~~~l~~~RDp~GiRPL~~G~~~~~----~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~ 238 (488)
++++++||||+++|+ +++||++|||+|+||||||+.++. |++|||||||+.+|++++|||+|||+++|+ ++|.
T Consensus 159 ~~~~i~GaYslv~~~~~~~l~a~RDp~GiRPL~lGk~~~~~~~~yvvASEs~Al~~ig~~~irdv~PGEiv~I~--~~G~ 236 (503)
T PRK09246 159 VHRRVRGAYAVVAMIIGHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYIT--EDGQ 236 (503)
T ss_pred HHHHCCCCEEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEECHHHHHHCCCCEEEECCCCEEEEEE--CCCC
T ss_conf 99757861699999629749999888887642777531799834999852134540497289954898799995--7997
Q ss_pred EEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99875307765664200000100247430003728999999999999874-----8656772012001204779999998
Q gi|254780336|r 239 ISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKE-----SPVIADIVVPIPDGGVPAAIGYAKE 313 (488)
Q Consensus 239 ~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~-----~~~~~DiV~~VPdsg~~aA~gya~~ 313 (488)
.+.. +..+..+.++|+|||||||||||++||++||++|++||+.||++ .++++|+|+||||||++||+|||++
T Consensus 237 ~~~~--~~~~~~~~~~C~FEyIYFaRpDS~idg~~Vy~~R~~lG~~LA~~i~~~~~~~~~DvVi~VPdSg~~aA~gya~~ 314 (503)
T PRK09246 237 LHTR--QCAENPKLNPCIFEYVYFARPDSIIDGISVYKARLRMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARI 314 (503)
T ss_pred EEEE--ECCCCCCCCCCEEEEEEECCCCCEECCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 8999--74678776653566654147872147818999999999999999886578766862500799718899999997
Q ss_pred CCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 19960010011765321011064467776532013432455338932897403533333888999998539978999965
Q gi|254780336|r 314 SGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 314 ~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
||+||++||+||||+|||||+|+|++|+.+|++||||++++|+||||||||||||||||||+||+|||+||||||||||+
T Consensus 315 sgipy~~gliKNrYvgRTFI~P~q~~R~~~vr~Kln~i~~~i~gK~vvlVDDSIVRGtT~k~Iv~~Lr~aGAkeVh~ria 394 (503)
T PRK09246 315 LGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTSEQIVQMARDAGAKKVYFASA 394 (503)
T ss_pred CCCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCEECCHHHCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 19961201210365576776986889998676520036431569769998455311641999999999759988999967
Q ss_pred CCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCH
Q ss_conf 89805886565005897888546699988999870997788833989998611466666756732012137876687645
Q gi|254780336|r 394 SPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDK 473 (488)
Q Consensus 394 sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~ 473 (488)
||||+||||||||||+++||||++ +++|||+++||||||.|||+|+|.+|++.. +++..+||+|||||+|||+..|+
T Consensus 395 sPpi~~Pc~yGID~~~~~eLIA~~-~~~eei~~~igaDsL~yls~e~l~~a~~~~--~~~~~~~c~acftG~Ypt~~~~~ 471 (503)
T PRK09246 395 APPVRYPNVYGIDMPTANELIAHG-RTVEEIRQLIGADGLIYQDLEDLIEAVRDG--NPDIKQFECSCFDGEYVTGDVDQ 471 (503)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHHCC--CCCCCCCCCEEECCCCCCCCCCH
T ss_conf 998578776734789979996569-999999988599758865599999997434--88756723436678166999799
Q ss_pred HHHHHHHHHH
Q ss_conf 5674466666
Q gi|254780336|r 474 QSQHNDEELS 483 (488)
Q Consensus 474 ~~~~~~~~~~ 483 (488)
.++..+|+..
T Consensus 472 ~y~~~~e~~~ 481 (503)
T PRK09246 472 EYLDRLEQLR 481 (503)
T ss_pred HHHHHHHHHH
T ss_conf 9999999874
No 11
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1227.59 Aligned_cols=457 Identities=44% Similarity=0.767 Sum_probs=427.6
Q ss_pred EEEEEC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 999981-8533689999998773158870279999799699980487167631504443206876789875122268986
Q gi|254780336|r 17 VFGILG-HPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQI 95 (488)
Q Consensus 17 I~Gi~~-~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~~~ 95 (488)
|||+|+ .++++..+|+||++|||||||||||+++|+++++++|++|+|+++|++ +.++.|+|++|||||||||+|+++
T Consensus 1 VfGi~~~~~~va~~~y~gL~aLQHRGQEsAGIa~~dg~~i~~~K~~GLV~~vF~e-~~l~~L~G~~~IGHvRYSTtG~s~ 79 (489)
T PRK07847 1 VFGVWAPGEEVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDE-QTLASLQGHVAIGHCRYSTTGAST 79 (489)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHCCH-HHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 9899559826789999998887515614102899839989999078635440583-247509985898673436899997
Q ss_pred CCCCCCEEEECCCC-EEEEEEEEEECCHHHHHHHHHHCCCC-----CCCCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q ss_conf 00278678746997-19999965508789999999864982-----4234307898898987302-56705689999865
Q gi|254780336|r 96 IRNVQPLFADLQVG-GIAIAHNGNFTNGLTLRKKLISSGAI-----FQSTSDTEVILHLIARSQK-NGSCDRFIDSLRHV 168 (488)
Q Consensus 96 ~~n~QPf~~~~~~g-~iaiaHNGnI~N~~eLr~~L~~~g~~-----f~s~sDTEvI~~Li~~~~~-~~~~e~i~~~l~~l 168 (488)
.+|+|||+++++.| +++|||||||+|+.+||++|++.|.. |+++||||+|+|||++... .++.++++++++++
T Consensus 80 ~~n~QP~~~~~~~g~~iAlaHNGNL~N~~eLr~~L~~~G~i~~~~~f~s~sDTEvi~~lia~~~~~~~i~~~i~~~~~~i 159 (489)
T PRK07847 80 WENAQPTFRNTAAGTGVALGHNGNLVNTAELAARARDLGLIAGRCPAPATTDSDLLTALLAHGAADSTLEQAALELLPTV 159 (489)
T ss_pred CCCCCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 31378856406899728998458506899999999966874333467877479999999973467677999999999860
Q ss_pred HCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf 30439999639979999825665415998269569998612001047874123317870799940898479987530776
Q gi|254780336|r 169 QGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248 (488)
Q Consensus 169 ~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~ 248 (488)
+||||++++++++||++|||+|+||||||+.+++|++|||||||+.+|++++|||+|||+++|+ ++|..+.. +. +
T Consensus 160 ~GaYslvil~~~~l~a~RDp~GiRPL~lGk~~~~~vvASEs~Al~~lg~e~irdV~PGEiv~I~--~~G~~s~~-~~--~ 234 (489)
T PRK07847 160 RGAFCLTFMDEHTLYAARDPYGVRPLVLGRLERGWVVASETAALDIVGASFVREIEPGELLAID--ADGVRSTR-FA--E 234 (489)
T ss_pred CCCEEEEEEECCEEEEEECCCCCCCEEEEEECCEEEEEECCHHHHCCCCEEEEECCCCEEEEEC--CCCEEEEE-CC--C
T ss_conf 6747999985683999988777753278971886899955012113497599816997089981--89617985-26--8
Q ss_pred CCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCC
Q ss_conf 56642000001002474300037289999999999998748656772012001204779999998199600100117653
Q gi|254780336|r 249 TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYV 328 (488)
Q Consensus 249 ~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~ 328 (488)
...++|+|||||||||||+++|++||++|++||+.||+|.|+++|+|+||||||++||+|||+++|+||++||+||||+
T Consensus 235 -~~~~~C~FEyIYFaRpdS~~~g~~Vy~~R~~~G~~LA~e~~~~~D~Vi~VPdSg~~aA~gyA~~sgip~~~gliKn~yv 313 (489)
T PRK07847 235 -PTPKGCVFEYVYLARPDSTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYV 313 (489)
T ss_pred -CCCCCCEEEEHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHCEEECCCC
T ss_conf -8875415650243189711478189999999999987437888997985699719999999997399544420014614
Q ss_pred CCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECC
Q ss_conf 21011064467776532013432455338932897403533333888999998539978999965898058865650058
Q gi|254780336|r 329 GRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIP 408 (488)
Q Consensus 329 gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p 408 (488)
|||||+|+|++|+.+|++||||++++|+||+|||||||||||||+|.||+|||+||||||||||+||||+||||||||||
T Consensus 314 gRTFI~p~q~~R~~~v~~Kln~i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~~PC~YGID~p 393 (489)
T PRK07847 314 GRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIASPPVKWPCFYGIDFA 393 (489)
T ss_pred CCCEECCCHHHHHHCCCEEEECCHHEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 74013786656663651477402641779879998478356677999999999769988999968998578876744789
Q ss_pred CHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 978885466999889998709977888339899986114666667567320121378766876455674466666530
Q gi|254780336|r 409 DPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDEELSLII 486 (488)
Q Consensus 409 ~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~~~~~~~ 486 (488)
+++||||++ +++||||++||||||.|||+|+|.+|++. +..+||++||||+|||+++||.+..++--.+|..
T Consensus 394 t~~ELIA~~-~s~eeI~~~igaDSL~ylsle~L~~aig~-----~~~~~C~aCftG~YP~~ip~e~~~~~~~~~~~~~ 465 (489)
T PRK07847 394 TPAELIANG-VTVEAVRRSIGADSLGYISLDGMIAATEQ-----PASRLCRACFDGKYPIELPDETALGKNLLEHMLA 465 (489)
T ss_pred CHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCC-----CCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 989996389-99999999869986883169999998679-----9778413430797688985377887899998751
No 12
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1218.02 Aligned_cols=444 Identities=50% Similarity=0.835 Sum_probs=423.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 56599998185336899999987731588702799997996999804871676315044432068767898751222689
Q gi|254780336|r 14 KCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488)
Q Consensus 14 eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488)
||||||++++++++..+|+||++|||||||||||++.++++++.+|++|+|+++|.+ +.++.++|+++||||||||+|.
T Consensus 1 MCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~k~~GlV~~vf~~-~~l~~l~G~~~IGHvRYsT~G~ 79 (445)
T PRK08525 1 MCAVVGVINSKNAAKYAYYALFAMQHRGQEASGISVSNGKKIKTIKARGLVTQVFNP-DKLKTLKGESAIGHNRYSTAGN 79 (445)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCHHHHCCH-HHHHCCCCCEEEEEECCCCCCC
T ss_conf 975999988852399999999986446614016999859989999678877773281-0353288858997710567999
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEE
Q ss_conf 86002786787469971999996550878999999986498242343078988989873025670568999986530439
Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 (488)
Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Gays 173 (488)
++..|+|||+.+++.|++++||||||+|+.+||++|+++|..|+|++|||+|+|||+++...++.+++.+++++++||||
T Consensus 80 ~s~~naQP~~~~~~~G~iaivHNGnI~N~~eLr~~L~~~G~~F~S~sDTEvI~~LI~~~~~~~~~~~i~~~~~~i~GaYs 159 (445)
T PRK08525 80 DSILDAQPIFARYDLGEIAIVHNGNLVNKEEVRSRLIQDGAIFQTNMDTENIIHLIARSKKESLKDRIIEALKKIIGAYC 159 (445)
T ss_pred CCCCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
T ss_conf 96336798872489988999993376089999999986897144656667889999865035689999999985456289
Q ss_pred EEEEECCEEEEEEECCCCCEEEEEE-CCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 9996399799998256654159982-695699986120010478741233178707999408984799875307765664
Q gi|254780336|r 174 MLALTRTKLIATRDPIGIRPLIMGE-LHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPE 252 (488)
Q Consensus 174 lv~l~~~~l~~~RDp~GiRPL~~G~-~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~ 252 (488)
++++++++||++|||+|+|||+||+ .++.|++|||||||+.+|++++|||+|||+++++.++.+..+++. .+. +.
T Consensus 160 lvil~~~~l~~~RDp~GiRPL~lGk~~~~~yivASEs~Al~~ig~~~irdv~PGEiv~i~~~~~~~~~~~~---~~~-~~ 235 (445)
T PRK08525 160 LVLLSRDKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLVGAEFIRDVKPGEMLIFEEGNDEFESIQL---FEP-TP 235 (445)
T ss_pred EEEEECCEEEEEECCCCCCCEEEEEECCCEEEEEECHHHHHCCCCEEEEECCCCEEEEEECCCCEEEEEEC---CCC-CC
T ss_conf 99986998999989777764389996697699997524442459779983489879999879973999974---799-86
Q ss_pred CEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEE
Q ss_conf 20000010024743000372899999999999987486567720120012047799999981996001001176532101
Q gi|254780336|r 253 RMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTF 332 (488)
Q Consensus 253 ~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtF 332 (488)
++|+|||||||||||+++|++||++|++||++||++.|+++|+|+||||||++||+|||++||+||++||+||||+||||
T Consensus 236 ~~C~FE~iYfarpdS~~~g~~Vy~~R~~~G~~La~~~~v~~D~Vi~VPdsg~~~a~gya~~~~ip~~~~likn~y~gRtF 315 (445)
T PRK08525 236 RICAFEYIYFARPDSIVEGKNVYEVRKKMGEELAKKFAVKADFVVPVPDSGVSAAIGYAQESGIPFEMAIVRNHYVGRTF 315 (445)
T ss_pred CCCEEEEEECCCCCCEECCEEHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 63233311125786103780899999999999862568678817865898578899999982994555312220026301
Q ss_pred EECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHH
Q ss_conf 10644677765320134324553389328974035333338889999985399789999658980588656500589788
Q gi|254780336|r 333 IEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTA 412 (488)
Q Consensus 333 I~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~e 412 (488)
|+|+|++|+.+|++||||++++|+||+|+|||||||||||+|+||+|||+||||||||||+||||+||||||||||+++|
T Consensus 316 I~p~q~~R~~~v~~Klnp~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGakeVh~~i~sPpi~~pC~yGiD~~~~~e 395 (445)
T PRK08525 316 IEPTQEMRNLKVKLKLNPMRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGASEIHMAIACPEIKFPCTYGIDTPTFEE 395 (445)
T ss_pred CCCCHHHHHHHHCCCEEEHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 48854455653232300234521798699981761557789999999997799889999689996888667667899899
Q ss_pred HHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 854669998899987099778883398999861146666675673201213787668
Q gi|254780336|r 413 LLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTP 469 (488)
Q Consensus 413 Lia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~ 469 (488)
|||++ +++|||+++||||||.|||+|+|.+|++. ..++|++||||+||++
T Consensus 396 Lia~~-~~~eei~~~igadsL~yls~e~l~~ai~~------~~~~C~aCftG~Yp~~ 445 (445)
T PRK08525 396 LISAN-KSVEEVRKYIGADSLSFLSIEELTRSIGD------ERKYSLASFDGDYFIK 445 (445)
T ss_pred HHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCC------CCCEECEECCCEECCC
T ss_conf 97579-99999998859986994279999998489------9884020318831069
No 13
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=1200.49 Aligned_cols=439 Identities=46% Similarity=0.740 Sum_probs=409.6
Q ss_pred HHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf 01156599998185336899999987731588702799997996999804871676315044432068767898751222
Q gi|254780336|r 11 INEKCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST 90 (488)
Q Consensus 11 ~~~eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT 90 (488)
|||||||||+++ ++++..+|+||++|||||||||||+++|+ +++.+|++|+|+++|++ +.++.|+|++|||||||||
T Consensus 1 ~~eeCGIfGv~s-~d~~~~~~~GL~~LQHRGqesaGIa~~dg-~~~~~k~~GlV~~vf~~-~~l~~l~G~~gIGHvRYsT 77 (442)
T PRK08341 1 MREKCGIFAAYS-ENAPKKAYYGLIALQHRGQEGAGISVWKG-RIRTVKGHGLVSEVFKG-GSLSSLRSNLAIGHVRYST 77 (442)
T ss_pred CCCCCEEEEEEC-CCCHHHHHHHHHHHHCCCCCEEEEEEECC-CEEEEECCCCHHHHCCC-CHHHCCCCCEEEEEEECCC
T ss_conf 974753899988-96289999999986167734104999999-58999468750010151-4143289848998810668
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q ss_conf 6898600278678746997199999655087899999998649824234307898898987302--56705689999865
Q gi|254780336|r 91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK--NGSCDRFIDSLRHV 168 (488)
Q Consensus 91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~--~~~~e~i~~~l~~l 168 (488)
+|+ ..|+|||..++..++++|||||||+|+.+||++|+++|+.|+++||||+|++++..... .+..++++++++++
T Consensus 78 ~Gs--~~n~QP~~~~~~~g~ialaHNGNI~N~~eLr~~L~~~G~~F~s~sDTEvI~~~~~~~~~~~~~~~eai~~~~~~i 155 (442)
T PRK08341 78 SGS--LSEVQPLEVECCGYKLAIAHNGTLTNFLPLRRSYESRGFKFHSSIDTELIGVSFLNHYSELGDEFEAMREVFNEV 155 (442)
T ss_pred CCC--CCCCCCCEECCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 899--734699742368997999982365189999999996699677867099999999998774175999999999960
Q ss_pred HCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf 30439999639979999825665415998269569998612001047874123317870799940898479987530776
Q gi|254780336|r 169 QGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248 (488)
Q Consensus 169 ~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~ 248 (488)
+||||+++|++++||++|||+|+||||||+ +++|++|||||||+.+|++ +|||+|||+++++ +++..+ +. .+
T Consensus 156 ~GaYsl~il~~~~l~a~RDp~GiRPL~lGk-~d~~~vASEs~Al~~~g~~-irdv~PGEii~i~--~~~~~s-~~---~~ 227 (442)
T PRK08341 156 KGAYSVAILFDGKIIVARDPVGFRPLSYGE-GDGYYFASEDSALRMFGGE-IRDVRPGEVFVVS--EGEVES-KV---LA 227 (442)
T ss_pred CCCEEEEEEECCEEEEEECCCCCCCEEEEC-CCEEEEEECHHHHHHCCCE-EEECCCCEEEEEC--CCCEEE-EE---CC
T ss_conf 674889999799399998988874338861-8759999513577517955-8973698489975--994799-96---79
Q ss_pred CCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCC
Q ss_conf 56642000001002474300037289999999999998748656772012001204779999998199600100117653
Q gi|254780336|r 249 TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYV 328 (488)
Q Consensus 249 ~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~ 328 (488)
..+.++|+|||||||||||++||++||++|++||+.||+|.|+++|+|+||||||++||+|||+++|+||++||+||||+
T Consensus 228 ~~~~~~C~FE~IYFarpdS~~~g~~Vy~~R~~~G~~LA~e~~~~~DvVi~VPdSg~~aa~Gya~~~gip~~~glikn~y~ 307 (442)
T PRK08341 228 REKHAHCVFEYIYFARPDSTINGVSVYHARYRMGVELARESPAEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYI 307 (442)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHEEECCCC
T ss_conf 99877427874401478630788689999999999986128987898996289749999999986299524300000121
Q ss_pred CCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECC
Q ss_conf 21011064467776532013432455338932897403533333888999998539978999965898058865650058
Q gi|254780336|r 329 GRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIP 408 (488)
Q Consensus 329 gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p 408 (488)
|||||+|+| |+.+|++||||++++|+||+|||||||||||||+|+||+|||+||||||||||+||||+||||||||||
T Consensus 308 gRtFI~P~q--R~~~v~~Kl~~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC~yGiD~~ 385 (442)
T PRK08341 308 GRTFIMPSG--RELKVKLKLSPVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPPIRYPCYMGIDIP 385 (442)
T ss_pred CCCCCCCCC--HHHCEEEEEEEEEEEECCCCEEEEECCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 554438873--002104465010001279814996143410542999999999769988999968998577776765789
Q ss_pred CHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 9788854669998899987099778883398999861146666675673201213787668764
Q gi|254780336|r 409 DPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472 (488)
Q Consensus 409 ~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~ 472 (488)
+++||||++ +++||||++||||||.|||+|+|.+|++. .++|++||||+||++..|
T Consensus 386 ~~~eLia~~-~s~eei~~~igadsL~yls~e~l~~aig~-------~~~C~aCf~G~YP~~~~~ 441 (442)
T PRK08341 386 TRHELIAAW-RSVEDIRKEIGADSLAYLSVEGLKRAVGT-------KDLCMACLTGEYPEWAFD 441 (442)
T ss_pred CHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCC-------CCCCCEECCCCCCCCCCC
T ss_conf 989997579-99999999859986882079999998389-------986154669979874458
No 14
>KOG0572 consensus
Probab=100.00 E-value=0 Score=1131.87 Aligned_cols=455 Identities=47% Similarity=0.807 Sum_probs=427.2
Q ss_pred CCEEEEEECCCCHH--HHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf 56599998185336--8999999877315887027999979-96999804871676315044432068767898751222
Q gi|254780336|r 14 KCGVFGILGHPDAA--TLTAIGLHALQHRGQEATGIISFNG-NKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST 90 (488)
Q Consensus 14 eCGI~Gi~~~~~~~--~~~~~gL~~LQHRGqdsaGIa~~d~-~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT 90 (488)
||||||++...++. ..++.++.+|||||||||||++.++ +++..+|++|+|+|+|++ +.++.|+|+++|||+||||
T Consensus 1 eCGv~Gi~~a~~~~~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte-~~l~~L~g~~gIGH~RYsT 79 (474)
T KOG0572 1 ECGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTE-DKLSQLPGSIGIGHTRYST 79 (474)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCHHHHHHCH-HHHHHCCCCEEEEEEECCC
T ss_conf 974789982486123747876467775177545544753786866997545126655257-7785185540211131266
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-------CCCCCCHHHHH
Q ss_conf 68986002786787469971999996550878999999986498242343078988989873-------02567056899
Q gi|254780336|r 91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARS-------QKNGSCDRFID 163 (488)
Q Consensus 91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~-------~~~~~~e~i~~ 163 (488)
+|++...|+|||++++++|.++++||||++|+++||++|+++|+.++|+||||+|+|+|+.. ...++..++.+
T Consensus 80 aG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~ 159 (474)
T KOG0572 80 AGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRD 159 (474)
T ss_pred CCCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCHHHHHHH
T ss_conf 65321025565587247722787306732366999999986075014688289999999736576622447638999999
Q ss_pred HHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECC-----CEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCE
Q ss_conf 9986530439999639979999825665415998269-----56999861200104787412331787079994089847
Q gi|254780336|r 164 SLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELH-----GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGF 238 (488)
Q Consensus 164 ~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~-----~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~ 238 (488)
+|+.+.|+||+++|+.|++|++|||+|+||||+|+.. +.|++|||||||+.+|+.+.|||.|||+|+++ .+|.
T Consensus 160 ~~~~~~g~Yslv~m~~d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~--r~g~ 237 (474)
T KOG0572 160 VMELLPGAYSLVFMTADKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEIS--RNGV 237 (474)
T ss_pred HHHHCCCCEEEEEEECCEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCEEEEECCCEEEEEECCCEEEEEE--CCCC
T ss_conf 99866775269998716789982688886605766338988620799723012340464798740786189985--5883
Q ss_pred EEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 99875307765664200000100247430003728999999999999874865677201200120477999999819960
Q gi|254780336|r 239 ISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPF 318 (488)
Q Consensus 239 ~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~ 318 (488)
.+...++.+...+.++|+|||||||||||+++|++||.+|.+||++||.+.|+++|+|++|||||++||+|||.++|+||
T Consensus 238 ~s~~~~~~~~~~~~~~cIFEyvYFArpdSi~eG~sVY~~R~~~G~~LA~e~P~d~DvVi~VPdS~~~aAlgyA~~sG~py 317 (474)
T KOG0572 238 KSVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVYTVRLQCGEQLATEAPVDADVVIPVPDSGTTAALGYAAKSGLPY 317 (474)
T ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCH
T ss_conf 04543148865665540325788515873023711489999886676215874455588579850378888888709960
Q ss_pred EHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 01001176532101106446777653201343245533893289740353333388899999853997899996589805
Q gi|254780336|r 319 EQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 319 ~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
.++|+||||+|||||+|+|++|+.+|++||+|++..++|||||||||||||||||+.||+|||++||||||+|||||||+
T Consensus 318 ~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPpi~ 397 (474)
T KOG0572 318 QEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPIK 397 (474)
T ss_pred HHHHHHCCCCCCEECCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 55200123135100076478888647665053234407856999736542267538999999875885789882188644
Q ss_pred CCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHH
Q ss_conf 886565005897888546699988999870997788833989998611466666756732012137876687645567
Q gi|254780336|r 399 YPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQ 476 (488)
Q Consensus 399 ~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~ 476 (488)
||||||||+||++||||++ .+++||++.||||||.|||+|+|.+++...+ .++.||++||||+|| .++++...
T Consensus 398 ~pc~yGIdipt~keLIA~~-~t~deiae~igadsv~ylsve~Lv~~~~~~~---~~~~~c~acfTG~Yp-g~~~e~~~ 470 (474)
T KOG0572 398 YPCYYGIDIPTSKELIANK-LTVDEIAEHIGADSVAYLSVEGLVDSVQTED---STKSFCTACFTGKYP-GVPTELEV 470 (474)
T ss_pred CCCEEECCCCCHHHHHHCC-CCHHHHHHHHCCCEEEEEEHHHHHHHHCCHH---CCCCEEEEEECCCCC-CCCHHHHH
T ss_conf 5514424778879997568-9879999873877068850888886632020---576524678635678-87335534
No 15
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=0 Score=585.17 Aligned_cols=250 Identities=54% Similarity=0.921 Sum_probs=232.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 65999981853368999999877315887027999979969998048716763150444320687678987512226898
Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQ 94 (488)
Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~~ 94 (488)
|||||++++++++..+++||.+|||||||||||+++++++++.+|++|+|+++|++ +.++.++|+++||||||||+|.+
T Consensus 1 CGI~Gi~~~~~~~~~l~~gL~~LqHRG~dsaGIa~~d~~~i~~~K~~G~V~~vf~~-~~~~~l~G~~gIGH~RysT~G~~ 79 (252)
T cd00715 1 CGVFGIYGAEDAARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDE-EKLRRLPGNIAIGHVRYSTAGSS 79 (252)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCHHHHHHH-HHHHCCCCCEEEEEEECCCCCCC
T ss_conf 97999988866799999999987037823276899839989999769846554424-44323777489767632226997
Q ss_pred CCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHCCEE
Q ss_conf 60027867874699719999965508789999999864982423430789889898730-25670568999986530439
Q gi|254780336|r 95 IIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQ-KNGSCDRFIDSLRHVQGAYA 173 (488)
Q Consensus 95 ~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~-~~~~~e~i~~~l~~l~Gays 173 (488)
+..|+|||+.+++.|+++|||||||+|+.+||++|+++|+.|+++||||+|+|||+++. +.++.+++.+++++++|+||
T Consensus 80 ~~~naqP~~~~~~~g~ialvHNG~I~N~~eL~~~l~~~g~~f~s~sDTEvI~~li~~~~~~~~~~~~i~~~~~~l~Gays 159 (252)
T cd00715 80 SLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYS 159 (252)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
T ss_conf 10047874415899769999953888999999999856998765888999999998654105299999999996121258
Q ss_pred EEEEECCEEEEEEECCCCCEEEEEEC-CCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 99963997999982566541599826-95699986120010478741233178707999408984799875307765664
Q gi|254780336|r 174 MLALTRTKLIATRDPIGIRPLIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPE 252 (488)
Q Consensus 174 lv~l~~~~l~~~RDp~GiRPL~~G~~-~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~ 252 (488)
++++++++||++|||+|+||||||+. ++.|+||||+|||+.+|++++|||+|||+++++ ++|..+.+ ..+..+.
T Consensus 160 l~~l~~~~l~~~RD~~GirPL~~G~~~~~~~~vASEs~Al~~~g~~~irev~pGEiv~i~--~~g~~~~~---~~~~~~~ 234 (252)
T cd00715 160 LVIMTADGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVID--DDGLESSQ---RAPKPKP 234 (252)
T ss_pred EEEEECCEEEEEECCCCCCCEEEEEECCCEEEEEEHHHHHHHCCCEEEEECCCCEEEEEE--CCCCEEEE---CCCCCCC
T ss_conf 999998989999888888765999924980899853565630586599971898389995--89719998---0799998
Q ss_pred CEEEEEHHCCCCCCCCCC
Q ss_conf 200000100247430003
Q gi|254780336|r 253 RMCIFEYVYFARPDSIIS 270 (488)
Q Consensus 253 ~~C~FEyIYFarpdS~~~ 270 (488)
++|+|||||||||||++|
T Consensus 235 ~~C~FE~VYfarpdS~id 252 (252)
T cd00715 235 APCIFEYVYFARPDSVID 252 (252)
T ss_pred CCCEEEEEEECCCCCCCC
T ss_conf 718886661058774679
No 16
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=0 Score=424.35 Aligned_cols=211 Identities=26% Similarity=0.405 Sum_probs=187.2
Q ss_pred CEEEEEECCC---CHHHHHHHHHHHHHCCCC-CEEEEEEEEC---------CEEEEEECCCCHHHHCCCHHHHHHCCCCE
Q ss_conf 6599998185---336899999987731588-7027999979---------96999804871676315044432068767
Q gi|254780336|r 15 CGVFGILGHP---DAATLTAIGLHALQHRGQ-EATGIISFNG---------NKFHSERHLGLVGDHFTKPETLSLLPGNM 81 (488)
Q Consensus 15 CGI~Gi~~~~---~~~~~~~~gL~~LQHRGq-dsaGIa~~d~---------~~i~~~K~~GlV~dvf~~~~~l~~l~G~~ 81 (488)
|||||++++. +++..++.||.+|||||| |||||++++. ..+.+.|+.|+|+++|.. ..++.++|++
T Consensus 1 CGI~Gi~~~~~~~~~~~~~~~~L~~LqhRGq~dsaGia~~~~~~~~~~~~g~~~~~~K~~G~v~~v~~~-~~l~~~~g~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARR-YDLEEYKGYH 79 (249)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCCEEEEECCCCHHHHHHH-HCCCCCCCCE
T ss_conf 979999858987548999999999970789714257999848984586347604788537889999866-4400267636
Q ss_pred EEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC-----
Q ss_conf 898751222689860027867874699719999965508789999999864982423430789889898730256-----
Q gi|254780336|r 82 AIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNG----- 156 (488)
Q Consensus 82 ~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~----- 156 (488)
+|||+||||+|.++..|+|||. .+++++||||||+|+.+||++|+++|+.|+++||||+|+|+|++..+..
T Consensus 80 ~IGH~RysT~g~~~~~~aqPf~----~~~~~lvhNG~i~N~~~lr~~l~~~g~~f~s~sDsEvi~~li~~~~~~~~~~~~ 155 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFS----IGDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLE 155 (249)
T ss_pred EEEEEECCCCCCCCCCCCCCCC----CCCEEEEECCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 7630503568998645777740----598868815413169999999997699723288089999999999873798378
Q ss_pred ----------------CCHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCC---CC
Q ss_conf ----------------70568999986530439999639979999825665415998269569998612001047---87
Q gi|254780336|r 157 ----------------SCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEIT---GA 217 (488)
Q Consensus 157 ----------------~~e~i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~i---g~ 217 (488)
...++..++..++|+||+++++++.++++|||+|+||||||+.++.|+||||+|||+.+ +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ldG~yal~i~~~~~l~~~RD~~GiRPL~~g~~~~~~~vASEs~Al~~i~~~~~ 235 (249)
T cd01907 156 YYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTPDGFIVIRDRIKLRPAVVAETDDYVAIASEECAIREIPDRDN 235 (249)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEECCCCCCEEEEEECCEEEEEECHHHHHHCCCCCC
T ss_conf 99986411111120018999998886157755999998994699981489998699984999999965999986048573
Q ss_pred CEEEECCCCEEEE
Q ss_conf 4123317870799
Q gi|254780336|r 218 KYIRDVENGETIV 230 (488)
Q Consensus 218 ~~irdv~PGEiiv 230 (488)
+.++|++|||+++
T Consensus 236 ~~v~e~~pGE~vv 248 (249)
T cd01907 236 AKVWEPRPGEYVI 248 (249)
T ss_pred CEEECCCCCEEEE
T ss_conf 3683378986896
No 17
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=0 Score=416.65 Aligned_cols=210 Identities=30% Similarity=0.483 Sum_probs=194.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 65999981853368999999877315887027999979969998048716763150444320687678987512226898
Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQ 94 (488)
Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~~ 94 (488)
|||||+++++++...++.||.+||||||||+||++.+++++..+|..|+|++++.+ .....++|++|||||||||+|.+
T Consensus 1 CGI~G~~~~~~~~~~l~~~L~~LqhRG~Ds~Gi~~~~~~~i~~~K~~G~v~~l~~~-~~~~~~~g~~gIGHtR~aT~G~~ 79 (215)
T cd00714 1 CGIVGYIGKREAVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEK-LAEKPLSGHVGIGHTRWATHGEP 79 (215)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHH-HHCCCCCCCEEEEEEECCCCCCC
T ss_conf 97999988854699999999975468854152899819989999816833456655-31136788678847443468998
Q ss_pred CCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHCCE
Q ss_conf 60027867874699719999965508789999999864982423430789889898730--2567056899998653043
Q gi|254780336|r 95 IIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQ--KNGSCDRFIDSLRHVQGAY 172 (488)
Q Consensus 95 ~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~--~~~~~e~i~~~l~~l~Gay 172 (488)
+..|+||++ +..+++++||||+|+|+.+||++|+++|+.|+|+||||||+||+++.. ..++.+++.+++++++|+|
T Consensus 80 ~~~NaqP~~--s~~~~i~lvhNG~I~N~~eLr~~L~~~g~~f~s~sDtEvi~~Li~~~~~~~~~~~~ai~~~~~~l~G~y 157 (215)
T cd00714 80 TDVNAHPHR--SCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAY 157 (215)
T ss_pred CCCCCCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCE
T ss_conf 755787869--799989999888244778999999977988258995799999999998619987999999997603021
Q ss_pred EEEEEEC---CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEE
Q ss_conf 9999639---9799998256654159982695699986120010478741233178707999
Q gi|254780336|r 173 AMLALTR---TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVC 231 (488)
Q Consensus 173 slv~l~~---~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi 231 (488)
|+++++. ++||++||+ |||+||+.++.|+||||+|||.....+++ +++|||+++|
T Consensus 158 a~~i~~~~~~~~l~~~R~~---~PL~~g~~~~~~~~aSE~~Al~~~~~~~~-~l~~geiv~I 215 (215)
T cd00714 158 ALAVISKDEPDEIVAARNG---SPLVIGIGDGENFVASDAPALLEHTRRVI-YLEDGDIAVI 215 (215)
T ss_pred EEEEEECCCCCCEEEECCC---CCEEEEEECCEEEEEECHHHHHHHCCEEE-EECCCCEEEC
T ss_conf 8889973899808997599---97899981999999978899888458699-9789969969
No 18
>pfam00310 GATase_2 Glutamine amidotransferases class-II.
Probab=100.00 E-value=0 Score=381.59 Aligned_cols=191 Identities=26% Similarity=0.311 Sum_probs=168.9
Q ss_pred CEEEEEECC------CCHHHHHHHHHHHHHCCCC------CEEEEEEEECCE--------EEEEECCCCHHHHCCCHHHH
Q ss_conf 659999818------5336899999987731588------702799997996--------99980487167631504443
Q gi|254780336|r 15 CGVFGILGH------PDAATLTAIGLHALQHRGQ------EATGIISFNGNK--------FHSERHLGLVGDHFTKPETL 74 (488)
Q Consensus 15 CGI~Gi~~~------~~~~~~~~~gL~~LQHRGq------dsaGIa~~d~~~--------i~~~K~~GlV~dvf~~~~~l 74 (488)
|||||++++ .++...+++||.+|||||| |||||++.++.. +..+|+.|+++++|......
T Consensus 1 CGI~Gi~~~~~~~~~~~~~~~~~~~L~~LqHRGq~~~~~~DsaGI~~~~~~~~~~~~~~~l~~~k~~g~~~~~~~~~~~~ 80 (223)
T pfam00310 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQIPDGFGAPSERRLFVIRKRGEKSIVAEFYLQD 80 (223)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHCCCCEEEEEEHEEEEHHHHHHCCC
T ss_conf 95489997188885389999999999985466988889998874799667420200023034441010000101011113
Q ss_pred HHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 20687678987512226898600278678746997199999655087899999998649824234307898898987302
Q gi|254780336|r 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK 154 (488)
Q Consensus 75 ~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~ 154 (488)
..++|+++||||||||+|.++.+|+|||.. +.+++||||||+|+.+||++|+++|+.|+++||||+|+++|++...
T Consensus 81 ~~l~g~~gIGH~RysT~g~~~~~n~qP~~~----~~~~l~HNG~i~N~~~lr~~l~~~g~~f~s~sDtE~i~~li~~~~~ 156 (223)
T pfam00310 81 ERFKSALAIVHTRFSTNGFPSWENAQPFRR----EGWVLAHNGEINTLRGLRNWMRAREGKFQSGSDSEALDNLLELLLR 156 (223)
T ss_pred CCCCCCEEEEEEECCCCCCCCHHCCCCCCC----CCEEEEECCEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 466742798996146689985310685423----6647984003754999999999659967889859999999999997
Q ss_pred C-----------CCCHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCC-EEEEEECC
Q ss_conf 5-----------6705689999865304399996399799998256654159982695-69998612
Q gi|254780336|r 155 N-----------GSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHG-KPIFCSET 209 (488)
Q Consensus 155 ~-----------~~~e~i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~-~~v~ASEs 209 (488)
. ++.+++..++++++|+||+++++++.++++|||+|+||||||+.++ .|+||||+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~l~G~yalv~~~~~~l~a~RD~~GiRPL~~G~~~d~~~~vASES 223 (223)
T pfam00310 157 AGRSPDMDPEERAFYEYLAGLMEPWDGPAALVFTDGRYVGATLDRNGLRPARYGITEDGLIVVASEA 223 (223)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCEEEEEECC
T ss_conf 0898557813889999999986148863899999899999998579997639999589989999588
No 19
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=371.22 Aligned_cols=262 Identities=30% Similarity=0.449 Sum_probs=212.4
Q ss_pred CEEEEEECC-CCHHHHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCCHHHHCCCHHHHHH-CCCCEEEEEEECCCC
Q ss_conf 659999818-53368999999877315887027999979-969998048716763150444320-687678987512226
Q gi|254780336|r 15 CGVFGILGH-PDAATLTAIGLHALQHRGQEATGIISFNG-NKFHSERHLGLVGDHFTKPETLSL-LPGNMAIGHVRYSTT 91 (488)
Q Consensus 15 CGI~Gi~~~-~~~~~~~~~gL~~LQHRGqdsaGIa~~d~-~~i~~~K~~GlV~dvf~~~~~l~~-l~G~~~IGHvRYsT~ 91 (488)
|||+|+++. .++...+..||..|..||+||||||+.++ +++.+.|..|.|.+.-..... .. ++|.+|||||||+|+
T Consensus 1 CGIVGyiG~~~~~~~~lleGL~rLEYRGYDSAGiAv~~~~g~l~v~k~~Gk~~~L~~~~~~-~~~l~g~~GIGHTRWATH 79 (628)
T TIGR01135 1 CGIVGYIGQDRDAVPILLEGLKRLEYRGYDSAGIAVVDEEGKLFVRKAKGKVAELANKLKE-KEVLSGGVGIGHTRWATH 79 (628)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHH-CCCCCCCCCEEEEEECCC
T ss_conf 9259998189860155654466523557652015885289718999547865899998630-776212310231000268
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-C--CCCHHHHHHHHHH
Q ss_conf 898600278678746997199999655087899999998649824234307898898987302-5--6705689999865
Q gi|254780336|r 92 GDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK-N--GSCDRFIDSLRHV 168 (488)
Q Consensus 92 G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~-~--~~~e~i~~~l~~l 168 (488)
|.++..||||+. +..|.+++||||.|-||.+||++|+.+|+.|.|+||||||+|||+.+.+ . ++.+++.+++++|
T Consensus 80 G~Pt~~NAHPH~--d~~g~iaVVHNGIIENy~~Lr~eL~~~G~~F~S~TDTEVIaHLie~~~~~~~~~L~~A~~~~~~~L 157 (628)
T TIGR01135 80 GKPTDENAHPHT--DEGGRIAVVHNGIIENYAELREELEARGHVFSSDTDTEVIAHLIEEELRQEGGDLLEAVQKALKQL 157 (628)
T ss_pred CCCCCCCCCCCC--CCCCCEEEEECCEECCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 788877888722--699527999778270548899899848928971367404888988984178841899999998762
Q ss_pred HCCEEEEEEEC---CEEEEEEECCCCCEEEEEE-CCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEE
Q ss_conf 30439999639---9799998256654159982-6956999861200104787412331787079994089847998753
Q gi|254780336|r 169 QGAYAMLALTR---TKLIATRDPIGIRPLIMGE-LHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSY 244 (488)
Q Consensus 169 ~Gayslv~l~~---~~l~~~RDp~GiRPL~~G~-~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~ 244 (488)
+||||+++++. ++|+++| .|- ||.+|. -++.+++||.-.||-..--+++ .++-||++++ +.+++..++..
T Consensus 158 ~G~YA~a~~~~~~P~~l~~AR--~~S-PLi~Gl~G~gE~F~ASD~~All~~T~~~~-~L~dGd~a~~--~~d~~~~i~n~ 231 (628)
T TIGR01135 158 RGAYALAVLHADHPETLVAAR--SGS-PLIVGLVGDGENFVASDVTALLPYTRRVI-YLEDGDIAIL--TKDGVREIYNI 231 (628)
T ss_pred CCCEEEEEEECCCCCEEEEEE--CCC-CEEEEEECCCCEEEECCHHHHHHHCCEEE-EECCCCEEEE--ECCCEEEEEEC
T ss_conf 662579998318896599996--378-76888835712698338278873278899-9506888998--04865899721
Q ss_pred ECCCCCCCCEEE--E--EHHCCCCCCCCC--C-CHHHHHHHHHHHHHHH
Q ss_conf 077656642000--0--010024743000--3-7289999999999998
Q gi|254780336|r 245 KNPSTSPERMCI--F--EYVYFARPDSII--S-GRSIYVSRRNMGKNLA 286 (488)
Q Consensus 245 ~~~~~~~~~~C~--F--EyIYFarpdS~~--~-g~~Vy~~R~~lG~~La 286 (488)
..+..+.+.+. . +|=+=+=--..+ + =+.+|+==+.|...|.
T Consensus 232 -~~~g~~~~r~~R~~~~~~~~~~aeKggy~HfMlKEIyEQP~a~~~tL~ 279 (628)
T TIGR01135 232 -FLEGAPVSREVRVEVIDWDLDAAEKGGYRHFMLKEIYEQPRALRDTLE 279 (628)
T ss_pred -CCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -567873022344158616567634788656342422676899999998
No 20
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=0 Score=366.20 Aligned_cols=214 Identities=32% Similarity=0.515 Sum_probs=192.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 56599998185336899999987731588702799997996999804871676315044432068767898751222689
Q gi|254780336|r 14 KCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488)
Q Consensus 14 eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488)
||||||+++++++...++.||..|||||+|||||++.+++++.+.|..|.|+++... ...+.++|++|||||||+|+|.
T Consensus 1 MCGI~g~~~~~~~~~~ll~gL~~LeyRGyDSaGia~~~~~~i~~~K~~G~v~~l~~~-~~~~~~~g~~gIgHtRWAThG~ 79 (604)
T PRK00331 1 MCGIVGYVGQRNAAPILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAA-LEEEPLPGTTGIGHTRWATHGK 79 (604)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHHHH-HCCCCCCCCEEEEECCCCCCCC
T ss_conf 964999985801899999999986446824067999809989999788778999866-5025789987782786757999
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCC
Q ss_conf 8600278678746997199999655087899999998649824234307898898987302--56705689999865304
Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK--NGSCDRFIDSLRHVQGA 171 (488)
Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~--~~~~e~i~~~l~~l~Ga 171 (488)
++..|+||+. +..+++++||||+|.||.+||++|.++|+.|+|+||||||+|||.+..+ .++.+++..++++++|+
T Consensus 80 ~s~~NAHPh~--~~~~~i~vVHNGiIeN~~~lk~~L~~~g~~f~S~TDtEvi~~li~~~~~~~~~~~~A~~~~~~~l~Gs 157 (604)
T PRK00331 80 PTERNAHPHT--DCSGRIAVVHNGIIENYAELKEELEAKGYVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGA 157 (604)
T ss_pred CCCCCCCCCC--CCCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 9877889881--89999999989711479999999997879664888478999999999871999999999999865480
Q ss_pred EEEEEEEC---CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEEC
Q ss_conf 39999639---9799998256654159982695699986120010478741233178707999408
Q gi|254780336|r 172 YAMLALTR---TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQ 234 (488)
Q Consensus 172 yslv~l~~---~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~ 234 (488)
||++++.. +.||++| .|- ||++|..++.+++||+..||-..--+ +.-++.||+++++.+
T Consensus 158 yAi~ii~~~~P~~i~~ar--~gS-PLvIG~g~~~~fiaSD~~al~~~t~~-~i~LeDgdia~I~~~ 219 (604)
T PRK00331 158 YALAVIDKDEPDTLVAAR--NGS-PLVIGLGEGENFLASDALALLPVTRR-FIYLEDGEIAVLTRD 219 (604)
T ss_pred CEEEEEECCCCCEEEEEE--CCC-CEEEEECCCEEEEECCCHHHHHHHHE-EEECCCCCEEEEEEE
T ss_conf 048999637874599995--599-82898069637993282766775212-797689988999833
No 21
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00 E-value=9.2e-44 Score=331.55 Aligned_cols=216 Identities=26% Similarity=0.431 Sum_probs=182.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCC-----HHHHCCCHHHHHHCCCCEEEEEEE
Q ss_conf 565999981853368999999877315887027999979-96999804871-----676315044432068767898751
Q gi|254780336|r 14 KCGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNG-NKFHSERHLGL-----VGDHFTKPETLSLLPGNMAIGHVR 87 (488)
Q Consensus 14 eCGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~-~~i~~~K~~Gl-----V~dvf~~~~~l~~l~G~~~IGHvR 87 (488)
=|||+|+++++++...+..||..|+.||+||||||+.++ +.+.+.|..|. +.+.-.+ .......|++||||||
T Consensus 78 ~CGIvGyvg~~~a~~iLl~GL~rLEYRGYDSAGIA~~~~~~~l~~~K~~~~~~~~~i~~L~~~-~~~~~~~~~iGIgHTR 156 (691)
T PTZ00295 78 CCGIIGYVGNRDASKILLDGIEILQNRGYDSCGMSTISSDNDLKTTKYASNTTSDAIERLKSN-YAHLHKNHHIGIAHTR 156 (691)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHH-HHCCCCCCCEEEEECC
T ss_conf 310799990877489999988886115526044899808996899996155442699999865-5325888987564377
Q ss_pred CCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHH
Q ss_conf 2226898600278678746997199999655087899999998649824234307898898987302--56705689999
Q gi|254780336|r 88 YSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK--NGSCDRFIDSL 165 (488)
Q Consensus 88 YsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~--~~~~e~i~~~l 165 (488)
|+|+|.++..|+||+. +..+++++||||.|.||.+||++|..+|+.|.|+||||||+|||.+... .++.+++.+++
T Consensus 157 WATHG~ps~~NAHPH~--d~~~~iavVHNGIIENy~eLK~~L~~~G~~F~SeTDTEVIahLi~~~~~~~~~~~~Av~~~~ 234 (691)
T PTZ00295 157 WATHGGKTDENAHPHL--DYKERISIVHNGIIENYRELKTELLKKGIPFRSETDTEVIANLIGYFLDQGESFQDAVLSAI 234 (691)
T ss_pred CCCCCCCCCCCCCCCC--CCCCCEEEEECCEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7899999988899884--89999999816304479999999997889564878759999999999870999999999999
Q ss_pred HHHHCCEEEEEEEC---CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCE
Q ss_conf 86530439999639---97999982566541599826956999861200104787412331787079994089847
Q gi|254780336|r 166 RHVQGAYAMLALTR---TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGF 238 (488)
Q Consensus 166 ~~l~Gayslv~l~~---~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~ 238 (488)
++|+|+||++++.. +.||++| .|- ||++|..++.+++||+..||-..--+ +..++.||+++++ .+++
T Consensus 235 ~~L~GsyAiavi~~~~P~~ii~aR--~gS-PLvIG~g~~e~fiASD~~Al~~~T~~-vi~LeDgdia~I~--~d~i 304 (691)
T PTZ00295 235 KQLQGTWGIAVIHKDHPDEMILAR--NGS-PLLIGFKDDEIFIASEHSALFMFTNE-YISLKNGEIASLS--KDGI 304 (691)
T ss_pred HHHCCCEEEEEEECCCCCEEEEEE--CCC-CEEEEECCCEEEECCCHHHHHHHCCE-EEEECCCEEEEEE--CCCE
T ss_conf 971683059999717997599996--699-74798059837972077998874686-9995698099995--6850
No 22
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.2e-43 Score=325.17 Aligned_cols=257 Identities=26% Similarity=0.428 Sum_probs=203.5
Q ss_pred CCEEEEEEC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 565999981-8533689999998773158870279999799699980487167631504443206876789875122268
Q gi|254780336|r 14 KCGVFGILG-HPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTG 92 (488)
Q Consensus 14 eCGI~Gi~~-~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G 92 (488)
||||+|+++ .+++...+..||..|..||+||||||+.+++++...|..|.+++. ......+.+.|.+||||+||+|+|
T Consensus 1 MCGIvG~i~~~~~~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l-~~~~~~~~~~~~~gIgHTRWATHG 79 (597)
T COG0449 1 MCGIVGYIGFLREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNL-EELLNKEPLIGGVGIAHTRWATHG 79 (597)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCHHHH-HHHHCCCCCCCCEEEEECCCCCCC
T ss_conf 9868999748853899999998887706777565799817818999825778788-765322566774555565446789
Q ss_pred CCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCE
Q ss_conf 98600278678746997199999655087899999998649824234307898898987302567056899998653043
Q gi|254780336|r 93 DQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAY 172 (488)
Q Consensus 93 ~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Gay 172 (488)
.++..|+||.. +++++++|||.|.||.+||++|+.+|+.|.|++|||||+||+++.++.++.++++.++++++|+|
T Consensus 80 ~P~~~NAHPh~----~~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsy 155 (597)
T COG0449 80 GPTRANAHPHS----DGEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSY 155 (597)
T ss_pred CCCCCCCCCCC----CCCEEEEECCHHHCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 88857789898----89799995734227899999999669888567614899999999986469999999998714305
Q ss_pred EEEEEEC---CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 9999639---9799998256654159982695699986120010478741233178707999408984799875307765
Q gi|254780336|r 173 AMLALTR---TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPST 249 (488)
Q Consensus 173 slv~l~~---~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~ 249 (488)
++++++. +.++++| .| -||++|.-++..++||.-.||-..--+ +-.+++|+++++. .+++. +. ...
T Consensus 156 al~~~~~~~p~~i~~ar--~~-sPL~iG~g~~e~f~aSD~~a~l~~t~~-~~~l~dgd~~~~~--~~~v~-~~---~g~- 224 (597)
T COG0449 156 ALLCTHSDFPDELVAAR--KG-SPLVIGVGEGENFLASDVSALLNFTRR-FVYLEEGDIAKLT--TDGVS-IN---DGN- 224 (597)
T ss_pred EEEEEECCCCCEEEEEC--CC-CCEEEEECCCCCEEECCHHHHHHHHCE-EEEECCCCEEEEE--CCCEE-EE---CCE-
T ss_conf 79998269997399986--89-985999658861586172666654146-8996699789997--79589-85---580-
Q ss_pred CCCCEEEEEHHCCCCCCCCC---CCHHHHHHHHHHHHHHH
Q ss_conf 66420000010024743000---37289999999999998
Q gi|254780336|r 250 SPERMCIFEYVYFARPDSII---SGRSIYVSRRNMGKNLA 286 (488)
Q Consensus 250 ~~~~~C~FEyIYFarpdS~~---~g~~Vy~~R~~lG~~La 286 (488)
..+....-||-..+--...+ =-..+|+-..-+-..|.
T Consensus 225 v~r~~~~~~~~~~~a~Kg~y~hfMlKEI~EQP~~i~~tl~ 264 (597)
T COG0449 225 VLRDVPVIEWDLCAAEKGGFRHFMLKEIYEQPEALRNTLQ 264 (597)
T ss_pred EEEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6653477216764775399874078888743999999998
No 23
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=100.00 E-value=4.4e-42 Score=319.58 Aligned_cols=212 Identities=38% Similarity=0.586 Sum_probs=188.4
Q ss_pred CEEEEEECCCCHHHH----HHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf 659999818533689----9999987731588702799997996999804871676315044432068767898751222
Q gi|254780336|r 15 CGVFGILGHPDAATL----TAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST 90 (488)
Q Consensus 15 CGI~Gi~~~~~~~~~----~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT 90 (488)
|||||+++..+.... .+.++..+||||+|++||++++.+.....|..+.+.+.+.. ...+.++++++|||+||+|
T Consensus 1 CgI~g~~~~~~~~~~~~~~~~~~~~~~~~rg~D~~Gi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~H~R~at 79 (220)
T cd00352 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALD-LLDEPLKSGVALGHVRLAT 79 (220)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCHHHHH-HHHCCCCCCEEEEEECCCC
T ss_conf 979999899875056799999999866357737050899939907999944763022323-2100356888999862730
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q ss_conf 6898600278678746997199999655087899999998649824234307898898987302-567056899998653
Q gi|254780336|r 91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK-NGSCDRFIDSLRHVQ 169 (488)
Q Consensus 91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~-~~~~e~i~~~l~~l~ 169 (488)
.|..+..|+|||... .++++++|||+|+|+.+|+++|...+..+.++||||+|++++.+... ....+++.+++++++
T Consensus 80 ~g~~~~~n~qPf~~~--~~~~~l~hNG~I~n~~~l~~~l~~~~~~~~~~tDsE~i~~l~~~~~~~~~~~~~i~~~~~~~~ 157 (220)
T cd00352 80 NGLPSEANAQPFRSE--DGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLD 157 (220)
T ss_pred CCCCCCCCCCCCEEC--CCCEEEEEEEEECCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 699863489798918--999999991477689999999986697307798599999999997241888999999999863
Q ss_pred CCEEEEEEEC--CEEEEEEECCCCCEEEEEEC-CCEEEEEECCHHCCCCCCCEEEECCCCEEE
Q ss_conf 0439999639--97999982566541599826-956999861200104787412331787079
Q gi|254780336|r 170 GAYAMLALTR--TKLIATRDPIGIRPLIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETI 229 (488)
Q Consensus 170 Gayslv~l~~--~~l~~~RDp~GiRPL~~G~~-~~~~v~ASEs~Al~~ig~~~irdv~PGEii 229 (488)
|+|+++++++ +.++++||++|+|||+||.. ++.++||||++++..++++.+++++|||++
T Consensus 158 G~~~~i~~~~~~~~l~~~rd~~G~rpL~~~~~~~~~~~vaSE~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 158 GPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred HHEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCEEEEEECHHHHHHCCCCEEEECCCCCCC
T ss_conf 224699997799879999689998785999917998999977898864896489998998779
No 24
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing); InterPro: IPR006426 These sequences represent glutamine-hydrolysing asparagine synthase. The group have a poorly conserved C-terminal extension while bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis .; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process.
Probab=100.00 E-value=5.5e-38 Score=290.40 Aligned_cols=203 Identities=25% Similarity=0.356 Sum_probs=159.7
Q ss_pred CEEEEEECCCC--------HHHHHHHHHHHHH-CCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEE
Q ss_conf 65999981853--------3689999998773-15887027999979969998048716763150444320687678987
Q gi|254780336|r 15 CGVFGILGHPD--------AATLTAIGLHALQ-HRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGH 85 (488)
Q Consensus 15 CGI~Gi~~~~~--------~~~~~~~gL~~LQ-HRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGH 85 (488)
|||+|++..+. ....+..|+..|. |||+|+.|+.. + ++...-.. |.. .-..-.++.++||
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~~~~~M~~~i~qHRGPD~~G~w~--~-R~VI~~~~------~~~--~~~~~~~~~~lgh 69 (646)
T TIGR01536 1 CGIAGFVDLDDKAVSKKDDEEEAIKRMLDTIAQHRGPDSSGVWI--D-RIVIKSAD------FED--LKVADQENAILGH 69 (646)
T ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE--C-CEEEECCC------CHH--HHHCCCCCCEEEE
T ss_conf 90788753666342004748999999999987447988576463--3-36883377------202--3203678816887
Q ss_pred EECCCCCCCCCCCCCCEEEECCC-CEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-CCCCCCHHHHH
Q ss_conf 51222689860027867874699-71999996550878999999986498242343078988989873-02567056899
Q gi|254780336|r 86 VRYSTTGDQIIRNVQPLFADLQV-GGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARS-QKNGSCDRFID 163 (488)
Q Consensus 86 vRYsT~G~~~~~n~QPf~~~~~~-g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~-~~~~~~e~i~~ 163 (488)
.|.|....+.. ..|||..+.+. +...|+|||+|+|+.+||++|+.+|+.|+|+||||||||++... ...+..+++.+
T Consensus 70 ~RLaiiDl~~g-G~QP~~~~~~~g~~~~i~~NGEIYN~~eLR~~L~~~G~~F~T~SDtEViL~~Y~~wfr~~~~~~g~e~ 148 (646)
T TIGR01536 70 RRLAIIDLSGG-GAQPMANEDKTGDTYVIVFNGEIYNHEELREELEAKGYTFETRSDTEVILHAYEEWFRNLDLEDGIEE 148 (646)
T ss_pred EEEEEEECCCC-CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 52489875567-75775224689866899981543155899999986794261688489999999997327886378999
Q ss_pred HHHHHHCCEEEEEEEC--CEEEEEEECCCCCEEEEEEC-CCEEEEEECCHHCCCCC-CCEEEECCCCEEE
Q ss_conf 9986530439999639--97999982566541599826-95699986120010478-7412331787079
Q gi|254780336|r 164 SLRHVQGAYAMLALTR--TKLIATRDPIGIRPLIMGEL-HGKPIFCSETCALEITG-AKYIRDVENGETI 229 (488)
Q Consensus 164 ~l~~l~Gayslv~l~~--~~l~~~RDp~GiRPL~~G~~-~~~~v~ASEs~Al~~ig-~~~irdv~PGEii 229 (488)
++.+|+|.|||++++. +.|+++|||+|||||||+.. ++.++||||-.||..+. -+.+..-.|++.+
T Consensus 149 ~~~~L~GmFAFa~~D~~~~~l~~aRDrfGiKPLYy~~~~~g~~~F~SE~Kal~~~~~~~~~~~~~~~~~l 218 (646)
T TIGR01536 149 CVDRLDGMFAFALWDKKKGELFLARDRFGIKPLYYAYDEGGQLYFASEIKALLAHPREENIKPEPDGAAL 218 (646)
T ss_pred HHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCEEEEECCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 9997389789999974777189984788623520134428626873104454227875676545771130
No 25
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=8.2e-37 Score=282.07 Aligned_cols=245 Identities=26% Similarity=0.309 Sum_probs=178.3
Q ss_pred CCEEEEEECCCC---HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf 565999981853---36899999987731588702799997996999804871676315044432068767898751222
Q gi|254780336|r 14 KCGVFGILGHPD---AATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST 90 (488)
Q Consensus 14 eCGI~Gi~~~~~---~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT 90 (488)
||||+|+++..+ ....+-.|+.+|+|||+|+.|+.. .+++++||+|.|.
T Consensus 1 MCGI~G~~~~~~~~~~~~~l~~m~~~l~HRGPD~~g~~~----------------------------~~~~~lgh~RLsI 52 (589)
T TIGR03104 1 MCGICGEIRFDGQAPDVAAVVRMLAVLAPRGPDAGGVHA----------------------------QGPVALGHRRLKI 52 (589)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEE----------------------------CCCEEEEEECCEE
T ss_conf 982799996699877999999999546285978778185----------------------------3998999701114
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 68986002786787469971999996550878999999986498242343078988989873025670568999986530
Q gi|254780336|r 91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG 170 (488)
Q Consensus 91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~G 170 (488)
.+.+... .|||. +.++++++++||+|+|+.+||++|...|+.|+|+||||||++++.+ .-.+++++++|
T Consensus 53 iDl~~~g-~QP~~--~~~~~~~ivfNGEIYN~~eLr~eL~~~g~~f~t~sDtEvll~~y~~--------~G~~~l~~l~G 121 (589)
T TIGR03104 53 IDLSEAS-QQPMV--DAELGLALVFNGCIYNYRELRAELEGLGYRFFSDGDTEVILKAYHA--------WGRDCVSRFNG 121 (589)
T ss_pred ECCCCCC-CCCCC--CCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH--------HHHHHHHHHCC
T ss_conf 2788568-99966--6999989999847645999999998679972899809999999999--------97999997327
Q ss_pred CEEEEEEEC--CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCC-------------------C--------CCEEE
Q ss_conf 439999639--979999825665415998269569998612001047-------------------8--------74123
Q gi|254780336|r 171 AYAMLALTR--TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEIT-------------------G--------AKYIR 221 (488)
Q Consensus 171 ayslv~l~~--~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~i-------------------g--------~~~ir 221 (488)
+||+++.+. ++++++|||+|+|||||...++.++||||-.||-.. + ++.|+
T Consensus 122 mFAfai~D~~~~~l~laRDr~GiKPLYY~~~~~~~~FaSEikall~~~~~~~~~~~~~l~~yl~~~~~~~~~~T~f~~I~ 201 (589)
T TIGR03104 122 MFAFAIWERDSGRLLLARDRLGIKPLYYAEDAGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVR 201 (589)
T ss_pred EEEEEEECCCCCEEEEEECCCCCCCEEEEEECCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 58999980788889998557778405999609879993353899847676541136789998522566589854035869
Q ss_pred ECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHH--HHHCCCCCC-----
Q ss_conf 3178707999408984799875307765664200000100247430003728999999999999--874865677-----
Q gi|254780336|r 222 DVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNL--AKESPVIAD----- 294 (488)
Q Consensus 222 dv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~L--a~~~~~~~D----- 294 (488)
.|+||+.+.++ .+|......|..+...+ .+.....+..+++.++-+.| |-+....+|
T Consensus 202 ~l~pG~~l~~~--~~~~~~~~~yw~~~~~~--------------~~~~~~~~~~~~~~~l~~~l~~sV~~rl~sDvpvg~ 265 (589)
T TIGR03104 202 KLPPATWMTVE--PDGSRTQRSYWSLDAGR--------------PADDAARTEADWQDAILEALRLAVKRRLVADVPVGV 265 (589)
T ss_pred EECCCEEEEEE--CCCCEEEEEECCCCCCC--------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 95894499996--79957875415765576--------------744345898999999999999999999744676300
Q ss_pred CCCCCCCCHHHHHHHHHHHC
Q ss_conf 20120012047799999981
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKES 314 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~ 314 (488)
..+|=-||+..+|+. ++..
T Consensus 266 ~LSGGlDSS~i~a~~-~~~~ 284 (589)
T TIGR03104 266 LLSGGLDSSLIVGLL-AEAG 284 (589)
T ss_pred ECCCCCCHHHHHHHH-HHHC
T ss_conf 017875438999999-9956
No 26
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=3e-36 Score=278.09 Aligned_cols=247 Identities=27% Similarity=0.342 Sum_probs=179.3
Q ss_pred CCEEEEEECCCC----HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECC
Q ss_conf 565999981853----3689999998773158870279999799699980487167631504443206876789875122
Q gi|254780336|r 14 KCGVFGILGHPD----AATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYS 89 (488)
Q Consensus 14 eCGI~Gi~~~~~----~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYs 89 (488)
||||+|+++... ....+-.|+.++.|||+|+.|+.. .+++++||+|.|
T Consensus 1 MCGI~G~~~~~~~~~~~~~~l~~m~~~~~hRGPD~~g~~~----------------------------~~~v~lgh~RLs 52 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHV----------------------------EPGIGLGHRRLS 52 (628)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEE----------------------------CCCEEEEECCEE
T ss_conf 9827999857888853799999999746687999888486----------------------------599899823300
Q ss_pred CCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 26898600278678746997199999655087899999998649824234307898898987302567056899998653
Q gi|254780336|r 90 TTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQ 169 (488)
Q Consensus 90 T~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~ 169 (488)
+.+.+. ..|||. +.+|++++++||+|+|+.+||++|...|+.|+|+||||||++++.+ .-.+++++++
T Consensus 53 IiDl~~--g~QP~~--~~~~~~~ivfNGEIYN~~eLr~~L~~~g~~f~t~sDtEVll~~y~~--------~G~~~~~~l~ 120 (628)
T TIGR03108 53 IIDLSG--GQQPLF--NEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEE--------WGEACVERFR 120 (628)
T ss_pred EECCCC--CCCCCC--CCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH--------HHHHHHHHHC
T ss_conf 107988--999977--5999989999614028999999998569961789819999999999--------8599998845
Q ss_pred CCEEEEEEEC--CEEEEEEECCCCCEEEEEECCC-EEEEEECCHHCCCCC--------------------------CCEE
Q ss_conf 0439999639--9799998256654159982695-699986120010478--------------------------7412
Q gi|254780336|r 170 GAYAMLALTR--TKLIATRDPIGIRPLIMGELHG-KPIFCSETCALEITG--------------------------AKYI 220 (488)
Q Consensus 170 Gayslv~l~~--~~l~~~RDp~GiRPL~~G~~~~-~~v~ASEs~Al~~ig--------------------------~~~i 220 (488)
|.||+++++. ++++++||++|+|||||...++ .++||||-.||-... ++.|
T Consensus 121 GmFAfai~D~~~~~l~laRDr~GiKPLYY~~~~~g~~~FaSEikall~~~~~~~~id~~~l~~yl~~~~~~~~~T~f~~I 200 (628)
T TIGR03108 121 GMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGV 200 (628)
T ss_pred EEEEEEEECCCCCEEEEECCCCCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 78899998377778999868666753068981896299810046887378876311599999999737889986401574
Q ss_pred EECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC-----
Q ss_conf 331787079994089847998753077656642000001002474300037289999999999998748656772-----
Q gi|254780336|r 221 RDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADI----- 295 (488)
Q Consensus 221 rdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~Di----- 295 (488)
+.|+||+.+.++.+.... .+..|...+..+.. +.| ....+.+.|..+-+..... .-+|+
T Consensus 201 ~~l~PG~~l~~~~~~~~~-~~~~yw~~~~~~~~-----------~~~--~~e~~~~~~~ll~~sV~~r--l~sDVpvG~~ 264 (628)
T TIGR03108 201 KKLEPGHTLTLRRGAPPA-RPRCYWDVSFAPAA-----------PLS--EADALAELIERLREAVRSR--MVADVPLGAF 264 (628)
T ss_pred EECCCCCEEEEECCCCCE-EEEEECCCCCCCCC-----------CCC--HHHHHHHHHHHHHHHHHHH--HCCCCCEEEE
T ss_conf 131897079998898715-78761367656567-----------999--9999999999999999998--0578856876
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 0120012047799999981996
Q gi|254780336|r 296 VVPIPDGGVPAAIGYAKESGIP 317 (488)
Q Consensus 296 V~~VPdsg~~aA~gya~~~gip 317 (488)
.+|=-||+.++|+. ++..+-|
T Consensus 265 LSGGlDSS~I~a~~-~~~~~~~ 285 (628)
T TIGR03108 265 LSGGVDSSAVVALM-AGLSDTP 285 (628)
T ss_pred ECCCCCHHHHHHHH-HHHCCCC
T ss_conf 46886368999999-9842998
No 27
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=5.6e-35 Score=269.02 Aligned_cols=240 Identities=27% Similarity=0.344 Sum_probs=172.9
Q ss_pred CCEEEEEECCCCH----HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECC
Q ss_conf 5659999818533----689999998773158870279999799699980487167631504443206876789875122
Q gi|254780336|r 14 KCGVFGILGHPDA----ATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYS 89 (488)
Q Consensus 14 eCGI~Gi~~~~~~----~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYs 89 (488)
||||+|+++.... ...+..|+..|+|||+|+.|+... +++++||.|.|
T Consensus 1 MCGI~G~~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~----------------------------~~~~lgh~RLs 52 (555)
T PRK09431 1 MCSIFGILDIKTDATELRKKALEMSKLMRHRGPDWSGIYAS----------------------------DKAILAHERLS 52 (555)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEE----------------------------CCEEEEEEEEE
T ss_conf 97189996588881256999999997565779999884970----------------------------99899985224
Q ss_pred CCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 26898600278678746997199999655087899999998649824234307898898987302567056899998653
Q gi|254780336|r 90 TTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQ 169 (488)
Q Consensus 90 T~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~ 169 (488)
..+..+ ..|||. +.+++++|++||+|+|+.+||++|+. ++.|.|+||||||++++.+ .-.+++++++
T Consensus 53 IiDl~~--g~QP~~--~~~~~~~lv~NGEIYN~~eLr~~L~~-~~~f~t~SDtEVil~ly~~--------~G~~~l~~L~ 119 (555)
T PRK09431 53 IVDVNG--GAQPLY--NEDKTHILAVNGEIYNHQELRAELGD-KYAFQTGSDCEVILALYQE--------KGPDFLDDLD 119 (555)
T ss_pred ECCCCC--CCCCCC--CCCCCEEEEEEEEEECHHHHHHHHHC-CCCCCCCCHHHHHHHHHHH--------HHHHHHHHCC
T ss_conf 436888--999958--39999899998886259999999854-8973589989999999999--------7699998737
Q ss_pred CCEEEEEEEC--CEEEEEEECCCCCEEEEEECC-CEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 0439999639--979999825665415998269-5699986120010478741233178707999408984799875307
Q gi|254780336|r 170 GAYAMLALTR--TKLIATRDPIGIRPLIMGELH-GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKN 246 (488)
Q Consensus 170 Gayslv~l~~--~~l~~~RDp~GiRPL~~G~~~-~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~ 246 (488)
|.|||++++. +.++++|||+|+|||+|+..+ +.++||||-.||..+ ++.|+.+.||+.+. .++|.. ..|..
T Consensus 120 GmFAFai~D~~~~~l~laRDr~GiKPLYy~~~~~g~l~FaSEiKaL~~~-~~~I~~~pPG~~l~---~~~g~~--~~y~~ 193 (555)
T PRK09431 120 GMFAFALYDGEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPV-CKTIKEFPPGHYYW---SKDGEF--VRYYH 193 (555)
T ss_pred CEEEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCEEEEECHHHHHHH-CCCEEECCCCEEEE---CCCCCE--EEEEC
T ss_conf 8468999827777799996157874259998179838997303356776-17718858950898---589978--98513
Q ss_pred CCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHHHHHCC
Q ss_conf 765664200000100247430003728999999999999874865677-----201200120477999999819
Q gi|254780336|r 247 PSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD-----IVVPIPDGGVPAAIGYAKESG 315 (488)
Q Consensus 247 ~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D-----iV~~VPdsg~~aA~gya~~~g 315 (488)
+.. ++ +...++ ....+.+.|..+-....++- .+| ..+|=-||+.++|+. ++.+.
T Consensus 194 ~~~-------~~---~~~~~~--~~~~~~~lr~lL~~AV~~rL--~sDvpvG~~LSGGLDSSlIaala-~k~~~ 252 (555)
T PRK09431 194 RDW-------FD---YDAVKD--NVTDKNELREALEAAVKKRL--MSDVPYGVLLSGGLDSSLISAIA-KKYAA 252 (555)
T ss_pred CCC-------CC---CCCCCC--HHHHHHHHHHHHHHHHHHHH--CCCCCEEEEECCCHHHHHHHHHH-HHHHC
T ss_conf 874-------55---455799--89999999999999999983--56886243205770679999999-98520
No 28
>PTZ00077 asparagine synthetase; Provisional
Probab=100.00 E-value=1.7e-34 Score=265.55 Aligned_cols=247 Identities=25% Similarity=0.314 Sum_probs=172.3
Q ss_pred CCEEEEEECCCCH----HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECC
Q ss_conf 5659999818533----689999998773158870279999799699980487167631504443206876789875122
Q gi|254780336|r 14 KCGVFGILGHPDA----ATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYS 89 (488)
Q Consensus 14 eCGI~Gi~~~~~~----~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYs 89 (488)
||||+|+++.... ...+..+...|+|||+|+.|+...++.. ....++||.|.|
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~G~~~~~~~~-----------------------~~~~~Lgh~RLs 57 (610)
T PTZ00077 1 MCGILAIFHSSIEKHRLRRKALELSKILRHRGPDWNGIVVEENDD-----------------------GTTNVLAHERLA 57 (610)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC-----------------------CCEEEEEECCCC
T ss_conf 974799965887657789999999863566699998968822688-----------------------753579833532
Q ss_pred CCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 26898600278678746997199999655087899999998649-82423430789889898730256705689999865
Q gi|254780336|r 90 TTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG-AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHV 168 (488)
Q Consensus 90 T~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g-~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l 168 (488)
..+..+ ..|||. +.++++++++||+|+|+.+||++|.+.| +.|+|+||||||++++.+. -.+++++|
T Consensus 58 IiDl~~--G~QPm~--~~~~~~~lv~NGEIYN~~eLR~~L~~~~~~~f~t~SDtEVIl~ly~~~--------G~~~~~~L 125 (610)
T PTZ00077 58 IVDVLS--GHQPLY--DDAEEVCLTINGEIYNHLELRKLIKEDNIKKLKSCSDCAVIPNLFKIF--------GEKIPSML 125 (610)
T ss_pred EECCCC--CCCCCC--CCCCCEEEEEEEEHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------HHHHHHHH
T ss_conf 508988--989962--699999999962032789999999865987667899379999999999--------79899874
Q ss_pred HCCEEEEEEEC--CEEEEEEECCCCCEEEEEECC-CEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 30439999639--979999825665415998269-569998612001047874123317870799940898479987530
Q gi|254780336|r 169 QGAYAMLALTR--TKLIATRDPIGIRPLIMGELH-GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYK 245 (488)
Q Consensus 169 ~Gayslv~l~~--~~l~~~RDp~GiRPL~~G~~~-~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~ 245 (488)
+|.|||++++. +.++++|||+|+||||||... +.++||||-.||.....++ ..+.||+......++..+. .+.
T Consensus 126 ~GmFAFai~D~~~~~l~laRD~~GiKPLYy~~~~dg~i~FaSE~KaL~~~~~~~-~~fpPGh~~~~~~~~~~~~---~y~ 201 (610)
T PTZ00077 126 DGIFAGVISDHKKNTFFAFRDPIGICPLYIGYAADGSIWFASEFKALKDNCIRY-VIFPPGHYYINCKNKGEFV---RYF 201 (610)
T ss_pred CCEEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCEEEEEECHHHHHHHHHEE-EECCCCEEEEEECCCCCEE---EEE
T ss_conf 165899999768897999965777765068985798699952104455544307-8328965899735887369---970
Q ss_pred CCCCCCCCEEEEEHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCHHHHHHHHHHHC
Q ss_conf 776566420000010024743000-37289999999999998748656772-----0120012047799999981
Q gi|254780336|r 246 NPSTSPERMCIFEYVYFARPDSII-SGRSIYVSRRNMGKNLAKESPVIADI-----VVPIPDGGVPAAIGYAKES 314 (488)
Q Consensus 246 ~~~~~~~~~C~FEyIYFarpdS~~-~g~~Vy~~R~~lG~~La~~~~~~~Di-----V~~VPdsg~~aA~gya~~~ 314 (488)
.+. |+.-+.++- +..++.+.|..|-+...+ .+.+|+ .+|=-||++++|+. ++.+
T Consensus 202 ~~~------------~~~~~~~~~~~~~~~~~lr~~L~~AV~~--rL~sDVPvG~lLSGGLDSSlIaAia-~k~l 261 (610)
T PTZ00077 202 NPN------------WWDLNAAIPNNKADFEEIRIHLEKAVIK--RLMGDVPFGILLSGGLDSSIIAAIL-AKHL 261 (610)
T ss_pred CCC------------CCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHH-HHHH
T ss_conf 786------------4565567887365499999999999999--8225672366634770589999999-9865
No 29
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=5.5e-35 Score=269.07 Aligned_cols=180 Identities=33% Similarity=0.479 Sum_probs=151.9
Q ss_pred CEEEEEECCCC---HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCC
Q ss_conf 65999981853---368999999877315887027999979969998048716763150444320687678987512226
Q gi|254780336|r 15 CGVFGILGHPD---AATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTT 91 (488)
Q Consensus 15 CGI~Gi~~~~~---~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~ 91 (488)
|||+|+++.+. ....+..+|.+|||||||+.|+.. .+++++||+|+|+.
T Consensus 1 CGI~Gi~~~~~~~~~~~~~~~~l~~l~hRGPD~~~~~~----------------------------~~~~~lgh~RLsi~ 52 (220)
T cd00712 1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIWI----------------------------DEGVALGHRRLSII 52 (220)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEE----------------------------ECCEEEEEEECCCC
T ss_conf 96999987899720599999999853466998478898----------------------------59989999874325
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 89860027867874699719999965508789999999864982423430789889898730256705689999865304
Q gi|254780336|r 92 GDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGA 171 (488)
Q Consensus 92 G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Ga 171 (488)
+.+ ...||+. +..+++++++||+|+|+.+|+++|..+|..|+++||||||++++.+.- .+++++++|+
T Consensus 53 d~~--~~~QP~~--~~~~~~~l~~NGeIyN~~eL~~~l~~~~~~~~~~sDtEvil~~y~~~G--------~~~~~~l~G~ 120 (220)
T cd00712 53 DLS--GGAQPMV--SEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEWG--------EDCLERLNGM 120 (220)
T ss_pred CCC--CCCCCCC--CCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC--------CEEEEECCCC
T ss_conf 886--6898961--589999999979996229999999864984667886999999987428--------6100124685
Q ss_pred EEEEEEEC--CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCC--------------------------CCEEEEC
Q ss_conf 39999639--9799998256654159982695699986120010478--------------------------7412331
Q gi|254780336|r 172 YAMLALTR--TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITG--------------------------AKYIRDV 223 (488)
Q Consensus 172 yslv~l~~--~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig--------------------------~~~irdv 223 (488)
||+++.+. ++++++|||+|+|||+|++.++.++||||..+|-... ++.|..|
T Consensus 121 fa~~i~D~~~~~l~l~RD~~G~KPLYY~~~~~~~~FsSeik~l~~~~~~~~~~n~~~l~~~l~~~~~~~~~T~~k~I~~l 200 (220)
T cd00712 121 FAFALWDKRKRRLFLARDRFGIKPLYYGRDGGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKL 200 (220)
T ss_pred EEEEEEECCCCEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCEEEE
T ss_conf 79999987898199987788860559995099899994679998676988547899999999659989799620090899
Q ss_pred CCCEEEEEEEC
Q ss_conf 78707999408
Q gi|254780336|r 224 ENGETIVCELQ 234 (488)
Q Consensus 224 ~PGEiivi~~~ 234 (488)
+||+++.++.+
T Consensus 201 ~PG~~l~~~~~ 211 (220)
T cd00712 201 PPGHYLTVDPG 211 (220)
T ss_pred CCCEEEEEECC
T ss_conf 99608999899
No 30
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-32 Score=247.44 Aligned_cols=238 Identities=29% Similarity=0.362 Sum_probs=181.2
Q ss_pred CCEEEEEECCCC---HHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf 565999981853---36899999987731588702799997996999804871676315044432068767898751222
Q gi|254780336|r 14 KCGVFGILGHPD---AATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST 90 (488)
Q Consensus 14 eCGI~Gi~~~~~---~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT 90 (488)
||||+|++...+ ....+..|+..|-|||+|+.|+.. .+++++||.|++.
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~----------------------------~~~~~~gh~rL~i 52 (542)
T COG0367 1 MCGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWI----------------------------SLNALLGHRRLSI 52 (542)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE----------------------------CCCCEEEEEEEEE
T ss_conf 985566512544330058999999987356998346573----------------------------3771377778885
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 68986002786787469971999996550878999999986498242343078988989873025670568999986530
Q gi|254780336|r 91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG 170 (488)
Q Consensus 91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~G 170 (488)
.+..+ ..||+.. ..+.+++++||+|+|+.+||++|...|+.|.|.||||||++++.+ ...+++++++|
T Consensus 53 ~d~~~--g~QP~~~--~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~--------~g~~~~~~l~G 120 (542)
T COG0367 53 VDLSG--GRQPMIK--EGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEE--------WGEDCVEHLNG 120 (542)
T ss_pred ECCCC--CCCCCCC--CCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH--------HHHHHHHHHCC
T ss_conf 31455--7888757--897589998898512799999997568500356633999999998--------65778877456
Q ss_pred CEEEEEEECC--EEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCC----CCEEEECCCCEEEEEEECCCCEEEEEEE
Q ss_conf 4399996399--799998256654159982695699986120010478----7412331787079994089847998753
Q gi|254780336|r 171 AYAMLALTRT--KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITG----AKYIRDVENGETIVCELQEDGFISIDSY 244 (488)
Q Consensus 171 ayslv~l~~~--~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig----~~~irdv~PGEiivi~~~~~g~~~i~~~ 244 (488)
.|++++.+.+ .++.+|||+|+|||+|+..++.++||||..||-..+ +..|++++||+.+.++.+.. +..|
T Consensus 121 ~fAfai~d~~~~~l~laRD~~GikPLyy~~~~~~l~faSE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~----~~~y 196 (542)
T COG0367 121 MFAFAIYDETRQKLFLARDPFGVKPLYYTSKNENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGL----IRRY 196 (542)
T ss_pred EEEEEEEECCCCEEEEEECCCCCCCCEEEECCCCEEEEECHHHHHCCCCCCCCCCCEEECCCCEEEECCCCC----EEEE
T ss_conf 069999988998899984588853217995288258874426675077543357707837997688648984----2432
Q ss_pred ECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCHHHHHHHHH
Q ss_conf 077656642000001002474300037289999999999998748656772-----0120012047799999
Q gi|254780336|r 245 KNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADI-----VVPIPDGGVPAAIGYA 311 (488)
Q Consensus 245 ~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~Di-----V~~VPdsg~~aA~gya 311 (488)
........+ .-....+...|..+.....+.- .+|+ .+|==||+..||+.=.
T Consensus 197 ~~~~~~~~~--------------~~~~~~~~~l~~~l~~sV~~r~--~advpvg~~lSGGlDSS~Iaa~a~~ 252 (542)
T COG0367 197 WRLSEKTSK--------------ESADELAEHLRSLLEDAVKRRL--VADVPVGVFLSGGLDSSLIAAIAAE 252 (542)
T ss_pred ECCCCCCCC--------------CCHHHHHHHHHHHHHHHHHHHH--CCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 014322256--------------6536688999999999998662--1588789996776229999999998
No 31
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.96 E-value=1.1e-27 Score=216.95 Aligned_cols=174 Identities=22% Similarity=0.311 Sum_probs=131.3
Q ss_pred CCEEEEEECCCCH----HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECC
Q ss_conf 5659999818533----689999998773158870279999799699980487167631504443206876789875122
Q gi|254780336|r 14 KCGVFGILGHPDA----ATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYS 89 (488)
Q Consensus 14 eCGI~Gi~~~~~~----~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYs 89 (488)
||||+|+++.... ....-.++..|+|||+|+.|+...+.. .+.+.++|.|.+
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~~~~~l~hRGPD~~g~~~~~~~------------------------~~~~~~~~~~L~ 56 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVT------------------------NWTLLFTSSVLS 56 (181)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCC------------------------CCEEEEEEEEEE
T ss_conf 97589999178875124999999985574779973588974146------------------------860567778885
Q ss_pred CCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 26898600278678746997199999655087899999998649824234307898898987302567056899998653
Q gi|254780336|r 90 TTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQ 169 (488)
Q Consensus 90 T~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~ 169 (488)
..|.... .|||.. ..+++.+++||+|+|+.+|+. +.||||+|++++..... ....+.+++++|+
T Consensus 57 i~~~~~~--~QP~~~--~~~~~~l~fNGEIYN~~~l~~----------~~sDtevl~~~~~~~~~--~~~~i~~~l~~l~ 120 (181)
T cd03766 57 LRGDHVT--RQPLVD--QSTGNVLQWNGELYNIDGVED----------EENDTEVIFELLANCSS--ESQDILDVLSSIE 120 (181)
T ss_pred CCCCCCC--CCCCCC--CCCCEEEEEEEEEECCCCCCC----------CCCHHHHHHHHHHHHHH--HHCCHHHHHHHCC
T ss_conf 1488778--989792--999999999478853664556----------79849999999998533--0101889998516
Q ss_pred CCEEEEEEEC--CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEE
Q ss_conf 0439999639--9799998256654159982695699986120010478741233178707
Q gi|254780336|r 170 GAYAMLALTR--TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGET 228 (488)
Q Consensus 170 Gayslv~l~~--~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEi 228 (488)
|.||+++++. ++++++|||+|+|||+|+..++++.|+|++.|-..-+. ...|+.||.+
T Consensus 121 GmFAfvi~D~~~~~l~l~RD~~G~KPLyy~~~~~~~~f~~ssv~~~~~~~-~~~e~~~~~i 180 (181)
T cd03766 121 GPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSSGS-GFQEVLAGGI 180 (181)
T ss_pred CEEEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCCCC-CEEECCCCCC
T ss_conf 22899999888999999988888756489996999899999723777889-7488789863
No 32
>KOG1268 consensus
Probab=99.96 E-value=7.3e-28 Score=218.32 Aligned_cols=225 Identities=24% Similarity=0.312 Sum_probs=163.9
Q ss_pred CCEEEEEECCC------CHHHHHHHHHHHHHCCCCCEEEEEEEEC--CEEEEEECCCCHHHH---CCCH--HHHHHCCCC
Q ss_conf 56599998185------3368999999877315887027999979--969998048716763---1504--443206876
Q gi|254780336|r 14 KCGVFGILGHP------DAATLTAIGLHALQHRGQEATGIISFNG--NKFHSERHLGLVGDH---FTKP--ETLSLLPGN 80 (488)
Q Consensus 14 eCGI~Gi~~~~------~~~~~~~~gL~~LQHRGqdsaGIa~~d~--~~i~~~K~~GlV~dv---f~~~--~~l~~l~G~ 80 (488)
||||||+.+.- .....++.||..|..||+||+||++-.+ ..+...|+.|+|+.. +++. +.-..+..+
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCCCCEEEHHHHHHHCCCCCCEEEEEE
T ss_conf 94156550245677478899999988887641677888536427863344452156741200688851375645013410
Q ss_pred EEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-----C
Q ss_conf 78987512226898600278678746997199999655087899999998649824234307898898987302-----5
Q gi|254780336|r 81 MAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK-----N 155 (488)
Q Consensus 81 ~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~-----~ 155 (488)
++|+||||+|.|.++..|+||+..+ +...+.++|||.|+||++|++.|+++|+.|.+++|||++++|..+-+. -
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd-~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~ 159 (670)
T KOG1268 81 CGIAHTRWATHGVPSEVNCHPHRSD-PSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDL 159 (670)
T ss_pred EEEEEEEHHHCCCCCCCCCCCCCCC-CCCCEEEEECCEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 3566642432488775678988689-997189997670236899999999648554336725899999999986187766
Q ss_pred CCCHHHHHHHHHHHCCEEEEEEE---CCEEEEEEECCCCCEEEEEECC--------------------------------
Q ss_conf 67056899998653043999963---9979999825665415998269--------------------------------
Q gi|254780336|r 156 GSCDRFIDSLRHVQGAYAMLALT---RTKLIATRDPIGIRPLIMGELH-------------------------------- 200 (488)
Q Consensus 156 ~~~e~i~~~l~~l~Gayslv~l~---~~~l~~~RDp~GiRPL~~G~~~-------------------------------- 200 (488)
++.+-+..++++++|||++++.. ++.+++.|+.. ||.+|-+.
T Consensus 160 ~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgS---PlliGvKs~~kls~d~~~V~y~~~~~~~~~~~~~~d~~~~ 236 (670)
T KOG1268 160 DFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKGS---PLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKAS 236 (670)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC---CCEEECCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCC
T ss_conf 4999999999984006988877640785435652588---3223012466443232101226521202553477553200
Q ss_pred ------C--EEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf ------5--699986120010478741233178707999408984799875307
Q gi|254780336|r 201 ------G--KPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKN 246 (488)
Q Consensus 201 ------~--~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~ 246 (488)
. .|++||...|+-.- -+-+--++-+++..+. ||..++...+.
T Consensus 237 ~~~~~~~~vEff~aSDasa~IEh-T~rV~flEDddia~v~---dG~lsihr~~~ 286 (670)
T KOG1268 237 LHFLAGSPVEFFTASDASALIEH-TKRVLFLEDDDIAHVS---DGELTIHRGKR 286 (670)
T ss_pred CCCCCCCCEEEEEECCCCHHHEE-CCEEEEECCCCEEEEE---CCCEEEEEECC
T ss_conf 14346895289970685421035-1315774067479984---38568996035
No 33
>KOG0571 consensus
Probab=99.91 E-value=5e-23 Score=183.87 Aligned_cols=334 Identities=26% Similarity=0.394 Sum_probs=208.9
Q ss_pred CCEEEEEECCCCHHHHHH--HHHH-HHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf 565999981853368999--9998-7731588702799997996999804871676315044432068767898751222
Q gi|254780336|r 14 KCGVFGILGHPDAATLTA--IGLH-ALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST 90 (488)
Q Consensus 14 eCGI~Gi~~~~~~~~~~~--~gL~-~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT 90 (488)
||||++++...+.-...- .-|. .+.|||+|-+|.+..+.+ .+||-|.+.
T Consensus 1 MCGI~Av~~~~~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~----------------------------~l~heRLAI 52 (543)
T KOG0571 1 MCGILAVLGHEDSEAKKPKALELSRRIRHRGPDWSGLAQRNDN----------------------------ILGHERLAI 52 (543)
T ss_pred CCCEEEEECCCCHHHCCHHHHHHHHHHCCCCCCCCHHHEECCC----------------------------CCCCCCEEE
T ss_conf 9841213156404335744556777635899796522200455----------------------------434321057
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 68986002786787469971999996550878999999986498242343078988989873025670568999986530
Q gi|254780336|r 91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG 170 (488)
Q Consensus 91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~G 170 (488)
.+.. ..+||+.+ ..+.+.+.+||+|+|+.+||+.+. .+.|+|.||.|+|+||..+. ...++...|+|
T Consensus 53 vdp~--sg~QPi~~--~~~~~~~~vNGEIYNH~~Lr~~~~--~~~~~T~sDcEvIi~lY~kh-------g~~~~~~~LDG 119 (543)
T KOG0571 53 VDPT--SGAQPIVG--EDGTYVVTVNGEIYNHKKLREHCK--DFEFQTGSDCEVIIHLYEKH-------GGEQAICMLDG 119 (543)
T ss_pred ECCC--CCCCCCCC--CCCCEEEEECCEECCHHHHHHHHH--HCCCCCCCCCEEEEEHHHHC-------CCHHHHHHHHH
T ss_conf 6688--67764213--787679987764454899998765--14423478841661157644-------72466777540
Q ss_pred CEEEEEEEC--CEEEEEEECCCCCEEEEEECC-CEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECC
Q ss_conf 439999639--979999825665415998269-56999861200104787412331787079994089847998753077
Q gi|254780336|r 171 AYAMLALTR--TKLIATRDPIGIRPLIMGELH-GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNP 247 (488)
Q Consensus 171 ayslv~l~~--~~l~~~RDp~GiRPL~~G~~~-~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~ 247 (488)
.||+++++. ++++++|||.|++|||+|... +.+.||||-.+|.-. ++-++--.||+... .+-.+. ..+.+|
T Consensus 120 ~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~-C~~i~~fpPgh~y~--~~~~~~---~r~f~p 193 (543)
T KOG0571 120 VFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDD-CEKIESFPPGHYYT--SKTGKL---TRYFNP 193 (543)
T ss_pred HEEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEEEHHHHHHH-HHHHEECCCCCEEE--CCCCCC---CCCCCC
T ss_conf 137889527887478336876741347886178857874102023333-10004558841412--344664---678893
Q ss_pred CCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHHHHHCCC------
Q ss_conf 65664200000100247430003728999999999999874865677-----2012001204779999998199------
Q gi|254780336|r 248 STSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD-----IVVPIPDGGVPAAIGYAKESGI------ 316 (488)
Q Consensus 248 ~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D-----iV~~VPdsg~~aA~gya~~~gi------ 316 (488)
||.++.-|-.-+| .-..|..+-...-+ .+-.| +.+|--||+.+|++. ++++..
T Consensus 194 ----------~w~~~~~~s~p~d---~~~~r~~~~~aV~K--RLM~d~p~GvLLSGGLDSSLvAsia-~R~lk~~~~~~~ 257 (543)
T KOG0571 194 ----------EWFDENIPSTPLD---YLALRHTLEKAVRK--RLMTDVPFGVLLSGGLDSSLVASIA-ARELKKAQAARG 257 (543)
T ss_pred ----------HHHHCCCCCCCCC---HHHHHHHHHHHHHH--HHHCCCCEEEEEECCCHHHHHHHHH-HHHHHHHHHHCC
T ss_conf ----------6650468888611---89999999999999--8631686158950773189999999-999987664127
Q ss_pred ----CEEHHEE------CCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHCCC
Q ss_conf ----6001001------1765321011064467776532013432455338932897403533333-8889999985399
Q gi|254780336|r 317 ----PFEQGII------RNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT-SVKIVQMIRSAGA 385 (488)
Q Consensus 317 ----p~~~~lv------kn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT-~k~iv~~lr~aGa 385 (488)
.|.-||- .-|-+ --||....++-...++.-+.++.++|- .+=--|=.++|-.| |=-+.+.+|..|.
T Consensus 258 ~~lhsFaIGle~SPDL~aarkV-Ad~igt~Hhe~~ft~qegidal~eVI~--hLETYDvttIRastpmyLlsr~Ikk~gv 334 (543)
T KOG0571 258 SKLHSFAIGLEDSPDLLAARKV-ADFIGTIHHEHTFTIQEGIDALDEVIY--HLETYDVTTIRASTPMYLLSRKIKKLGV 334 (543)
T ss_pred CCCEEEEECCCCCHHHHHHHHH-HHHHCCCCEEEEECHHHHHHHHHHHHE--EEECCCCCEEECCCCHHHHHHHHHHCCE
T ss_conf 8754788528998537888999-987488523899758887778887742--4101344158617746789999976552
Q ss_pred CEEEEEECCCCCCCCCCCCEECCCHHHH
Q ss_conf 7899996589805886565005897888
Q gi|254780336|r 386 SEVHLRVASPMVLYPDFYGIDIPDPTAL 413 (488)
Q Consensus 386 ~evh~ri~sPpi~~pc~yGid~p~~~eL 413 (488)
|-|---=+|-.|--.--|=-.-|+.+|+
T Consensus 335 kmvlSGEGsDEifggYlYfh~APs~~~f 362 (543)
T KOG0571 335 KMVLSGEGSDEIFGGYLYFHKAPSAEEF 362 (543)
T ss_pred EEEEECCCCHHHHCCEEEEECCCCHHHH
T ss_conf 8998157713442112110038897898
No 34
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.87 E-value=3.6e-20 Score=163.51 Aligned_cols=209 Identities=24% Similarity=0.287 Sum_probs=145.1
Q ss_pred CCEEEEEECCCCH-HHHHHHHHHHH--HCCC---------CCEEEEEEEE--CCEEEEEECCCCH-HHHCCCHHHHHHCC
Q ss_conf 5659999818533-68999999877--3158---------8702799997--9969998048716-76315044432068
Q gi|254780336|r 14 KCGVFGILGHPDA-ATLTAIGLHAL--QHRG---------QEATGIISFN--GNKFHSERHLGLV-GDHFTKPETLSLLP 78 (488)
Q Consensus 14 eCGI~Gi~~~~~~-~~~~~~gL~~L--QHRG---------qdsaGIa~~d--~~~i~~~K~~GlV-~dvf~~~~~l~~l~ 78 (488)
||-++|+.+.+-. ...++..-++| |.++ .||+||++++ +.....+|..-.. ++.. .......++
T Consensus 1 MCRll~y~g~~~~l~~~l~~~~~sl~~qs~~~~~~~~~~n~DGwGi~wy~~~~~~p~~~r~~~pa~sd~~-~~~l~~~i~ 79 (257)
T cd01908 1 MCRLLGYSGAPIPLEPLLIRPSHSLLVQSGGPREMKGTVHADGWGIGWYEGKGGRPFRYRSPLPAWSDIN-LESLARPIK 79 (257)
T ss_pred CCCCCCCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHH-HHHHHHCCC
T ss_conf 9702501377754764265577317775168421479988997469888379954888689876658856-787653247
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 76789875122268986002786787469971999996550878999999986498-2423430789889898730256-
Q gi|254780336|r 79 GNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA-IFQSTSDTEVILHLIARSQKNG- 156 (488)
Q Consensus 79 G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~-~f~s~sDTEvI~~Li~~~~~~~- 156 (488)
....|+|+|++|.|..+..|+|||.. +.++++|||.|.++..++..+..... ....+||||.++.+|-......
T Consensus 80 s~~~laHvR~AT~G~v~~~N~HPF~~----~~~~F~HNG~i~~~~~~~~~~~~~~~~~~~G~TDSE~~F~~ll~~l~~~~ 155 (257)
T cd01908 80 SPLVLAHVRAATVGPVSLENCHPFTR----GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERD 155 (257)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCEEE----CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 75499998617789776356787266----57999967734787888898863354334678869999999999998618
Q ss_pred ------CCHHHHHHHHHHH-----CCEEEEEEECCEEEEEEECCCCCEEEEEEC------------------CCEEEEEE
Q ss_conf ------7056899998653-----043999963997999982566541599826------------------95699986
Q gi|254780336|r 157 ------SCDRFIDSLRHVQ-----GAYAMLALTRTKLIATRDPIGIRPLIMGEL------------------HGKPIFCS 207 (488)
Q Consensus 157 ------~~e~i~~~l~~l~-----Gayslv~l~~~~l~~~RDp~GiRPL~~G~~------------------~~~~v~AS 207 (488)
..+++.++++.+. +.+.+++.+++.|++.|.... +.|+|-.. ++.++|||
T Consensus 156 ~~~~~~~~~~l~~~~~~l~~~~~~~~lN~~~sdG~~l~a~r~~~~-~sLy~~~~~~~~~~~~~~~~~~~~~~~~~vvVAS 234 (257)
T cd01908 156 PLDPAELLDAILQTLRELAALAPPGRLNLLLSDGEYLIATRYASA-PSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVAS 234 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEECCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 876688999999999999842878269999987998999997799-9547886558765444110113368899999993
Q ss_pred CCHHCCCCCCCEEEECCCCEEEEEE
Q ss_conf 1200104787412331787079994
Q gi|254780336|r 208 ETCALEITGAKYIRDVENGETIVCE 232 (488)
Q Consensus 208 Es~Al~~ig~~~irdv~PGEiivi~ 232 (488)
|.--- .+.+++|+||++++++
T Consensus 235 ePL~~----~~~W~~v~~~~llvv~ 255 (257)
T cd01908 235 EPLTD----DEGWTEVPPGELVVVS 255 (257)
T ss_pred CCCCC----CCCCEECCCCEEEEEE
T ss_conf 89999----9795790898399994
No 35
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.86 E-value=2.2e-20 Score=165.01 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=117.0
Q ss_pred CEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 67898751222689860027867874699719999965508789999999864982423430789889898730256705
Q gi|254780336|r 80 NMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCD 159 (488)
Q Consensus 80 ~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e 159 (488)
..++.|.|.++-..+.. ..|||. ..+.++++||+|+|+.+||++|...|+.|.|.||||||++++.+
T Consensus 26 ~~aL~h~rLsIidl~~~-~~qp~~----~~~~tlv~nGEIYNy~eLR~eL~~~g~~f~t~sDtEVlL~~~~~-------- 92 (199)
T cd01909 26 GEALPNGAGTIVHAGSV-DVQVAR----SETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR-------- 92 (199)
T ss_pred CEEECCCCEEEEECCCC-CCCCEE----CCCEEEEEEEEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHHH--------
T ss_conf 50602351899866875-668616----37689999577417999999998669575458726999999999--------
Q ss_pred HHHHHHHHHHCCEEEEEEEC-CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCC-----------------CCCEEE
Q ss_conf 68999986530439999639-979999825665415998269569998612001047-----------------874123
Q gi|254780336|r 160 RFIDSLRHVQGAYAMLALTR-TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEIT-----------------GAKYIR 221 (488)
Q Consensus 160 ~i~~~l~~l~Gayslv~l~~-~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~i-----------------g~~~ir 221 (488)
.-.++++++.|+|++++.++ +.|+.+||++|++|||+- .++...||||-.++-.+ +...+.
T Consensus 93 wG~~~l~rl~GmFAFai~D~~~~L~LaRDr~G~KPLY~~-~~g~~~~asElK~l~a~~G~~~~~~~~~~~~~~~~~~~v~ 171 (199)
T cd01909 93 LGLHAFRLAEGDFCFFIEDGNGRLTLATDHAGSVPVYLV-QAGEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQ 171 (199)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCEEEE-ECCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 829999872667899998599969999768998435898-4897998600012320779986567667875368877847
Q ss_pred ECCCCEEEEEEECCCCEEE
Q ss_conf 3178707999408984799
Q gi|254780336|r 222 DVENGETIVCELQEDGFIS 240 (488)
Q Consensus 222 dv~PGEiivi~~~~~g~~~ 240 (488)
-|+||-+..++.+..++..
T Consensus 172 r~~pGt~~~l~~~~~~~~~ 190 (199)
T cd01909 172 RVPPGTVNVLTFDGGSYGT 190 (199)
T ss_pred ECCCCCEEEEEECCCCCEE
T ss_conf 7189707999733787148
No 36
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.83 E-value=9.2e-19 Score=153.50 Aligned_cols=161 Identities=20% Similarity=0.133 Sum_probs=120.8
Q ss_pred EEEECCCCHHHHCC---CHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHC
Q ss_conf 99804871676315---044432068767898751222689860027867874699719999965508789999999864
Q gi|254780336|r 56 HSERHLGLVGDHFT---KPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISS 132 (488)
Q Consensus 56 ~~~K~~GlV~dvf~---~~~~l~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~ 132 (488)
.++|++|+..++-. +. ....++|.++|+|+||||+.-+++.-+|||- + +||||+|.|+...++.|+.+
T Consensus 177 ~VYKG~~~p~~V~~~y~dl-~~~~~~s~~~l~HsRFSTNT~p~W~~AHPfr-------~-lvHNGEInT~~gN~nwm~ar 247 (371)
T COG0067 177 IVYKGVGLPEDVAEFYLDL-DDERYKSAIALVHTRFSTNTFPSWPLAHPFR-------L-LVHNGEINTYGGNRNWLEAR 247 (371)
T ss_pred EEEECCCCHHHHHHHHHHC-CCHHHCEEEEEEEECCCCCCCCCCCCCCCCE-------E-EEECCEECCCCCHHHHHHHH
T ss_conf 9993056899997777652-4422124689998006788899887678665-------3-33355021541179999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCC----CCHHHHH----------HHHHHHCCEEEEEEE---CCEEEEEEECCCCCEEE
Q ss_conf 982423430789889898730256----7056899----------998653043999963---99799998256654159
Q gi|254780336|r 133 GAIFQSTSDTEVILHLIARSQKNG----SCDRFID----------SLRHVQGAYAMLALT---RTKLIATRDPIGIRPLI 195 (488)
Q Consensus 133 g~~f~s~sDTEvI~~Li~~~~~~~----~~e~i~~----------~l~~l~Gayslv~l~---~~~l~~~RDp~GiRPL~ 195 (488)
+..|.+.+|||++.+++.-..... ..+...+ ...++.|.++...-+ ++....++|+.+.||.+
T Consensus 248 ~~~~~s~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~~~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epw 327 (371)
T COG0067 248 GYKFESPTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPW 327 (371)
T ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHEECCCCCCCCEEEEEEHHHHCCCCC
T ss_conf 24010465288899987876024774111467898877518571457771696540337779844079886064477875
Q ss_pred EEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEE
Q ss_conf 98269569998612001047874123317870799
Q gi|254780336|r 196 MGELHGKPIFCSETCALEITGAKYIRDVENGETIV 230 (488)
Q Consensus 196 ~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiiv 230 (488)
-|..+..+..+||-.|+.... -++|+...+
T Consensus 328 dGpa~~~f~dgse~gA~ldrn-----gLrp~Ry~~ 357 (371)
T COG0067 328 DGPADIVFTDGSEEGAILDRN-----GLRPARYWI 357 (371)
T ss_pred CCCCCEEEEECCEEEEEECCC-----CCCCCEEEE
T ss_conf 077621687420554540237-----987542899
No 37
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.79 E-value=3.9e-17 Score=141.91 Aligned_cols=208 Identities=19% Similarity=0.195 Sum_probs=141.8
Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHH--HC------C----CCCEEEEEEEECC---EEEEEECCCCH-HH-HCCCHHHHH
Q ss_conf 565999981853-368999999877--31------5----8870279999799---69998048716-76-315044432
Q gi|254780336|r 14 KCGVFGILGHPD-AATLTAIGLHAL--QH------R----GQEATGIISFNGN---KFHSERHLGLV-GD-HFTKPETLS 75 (488)
Q Consensus 14 eCGI~Gi~~~~~-~~~~~~~gL~~L--QH------R----GqdsaGIa~~d~~---~i~~~K~~GlV-~d-vf~~~~~l~ 75 (488)
||-.+|+.+.+- ...+++..-++| |. | --||+|+++++++ .-..+|...-. +| .|. ....
T Consensus 1 MCR~l~y~G~p~~l~~ll~~p~hSL~~QS~~~~~~~~~~~N~DGfGvgWy~~~~~~~P~~yr~~~PaW~D~nl~--~la~ 78 (251)
T TIGR03442 1 MCRHLAYLGAPVSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFA--SLAR 78 (251)
T ss_pred CCCCCEECCCCEEHHHHHCCCCCHHHHHCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHH--HHHH
T ss_conf 96011651696688885528861388866275554588556886179887688888870450686354681199--9986
Q ss_pred HCCCCEEEEEEECCCCCC-CCCCCCCCEEEECCCCEEEEEEEEEECCHHH-HHHHHHHCC-----CCCCCCCCHHHHHHH
Q ss_conf 068767898751222689-8600278678746997199999655087899-999998649-----824234307898898
Q gi|254780336|r 76 LLPGNMAIGHVRYSTTGD-QIIRNVQPLFADLQVGGIAIAHNGNFTNGLT-LRKKLISSG-----AIFQSTSDTEVILHL 148 (488)
Q Consensus 76 ~l~G~~~IGHvRYsT~G~-~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~e-Lr~~L~~~g-----~~f~s~sDTEvI~~L 148 (488)
.+++...++|||.+|.|. .+..|||||. +|++.++|||.|.|+.+ |++.|...- .....++|||.+..|
T Consensus 79 ~v~S~~~lAHVR~AT~G~~v~~~NcHPF~----~g~~lF~HNG~I~~f~~~l~r~l~~~l~~~~~~~i~G~TDSE~~Fal 154 (251)
T TIGR03442 79 YVESGCVLAAVRSATVGMAIDESACAPFS----DGRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFAL 154 (251)
T ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCE----ECCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 41366589886505688765523478833----57789994772377458889999853798787441488758999999
Q ss_pred HHHHCCCC----CCHHHHHHHHHHH--C-----CEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCC
Q ss_conf 98730256----7056899998653--0-----43999963997999982566541599826956999861200104787
Q gi|254780336|r 149 IARSQKNG----SCDRFIDSLRHVQ--G-----AYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGA 217 (488)
Q Consensus 149 i~~~~~~~----~~e~i~~~l~~l~--G-----ayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~ 217 (488)
+-...... ..+.+.++++.++ + .+.+++.+++.++|.| ++ ..|+|-+.++++++|||.. +. .
T Consensus 155 ~l~~l~~~~~~al~~ai~~~~~~~~~~~~~~~~~lN~~ltDG~~l~AtR--~~-~sLy~~~~~~~vvVASEPl--d~--~ 227 (251)
T TIGR03442 155 LLNRLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDGSRLVATR--WA-DTLYWLKDPEGVIVASEPY--DD--D 227 (251)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEE--EC-CCEEEEECCCEEEEEECCC--CC--C
T ss_conf 9998876486379999999999999864286706899996499999999--45-8638993699799997888--99--9
Q ss_pred CEEEECCCCEEEEEEEC
Q ss_conf 41233178707999408
Q gi|254780336|r 218 KYIRDVENGETIVCELQ 234 (488)
Q Consensus 218 ~~irdv~PGEiivi~~~ 234 (488)
..+++|.++++++++.+
T Consensus 228 ~~W~~vP~~s~l~v~~~ 244 (251)
T TIGR03442 228 PGWQDVPDRHLLSVSED 244 (251)
T ss_pred CCCEECCCCCEEEEECC
T ss_conf 79649899968999789
No 38
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.78 E-value=1.4e-17 Score=145.07 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=111.9
Q ss_pred EEEECCCCHHH---HCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHC
Q ss_conf 99804871676---315044432068767898751222689860027867874699719999965508789999999864
Q gi|254780336|r 56 HSERHLGLVGD---HFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISS 132 (488)
Q Consensus 56 ~~~K~~GlV~d---vf~~~~~l~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~ 132 (488)
.++|++.+..+ .|.+.. -+.++...+|.|.||||+..++|.-+|||- + |+|||+|.-..-.+..+..+
T Consensus 187 IVYKGml~~~ql~~fY~DL~-d~~f~S~~al~HsRFSTNTfPsW~lAQPfR-------~-laHNGEINTirGN~nwm~AR 257 (1483)
T PRK11750 187 IIYKGLMMPADLPRFYLDLA-DLRLESAICVFHQRFSTNTLPRWPLAQPFR-------Y-LAHNGEINTITGNRQWARAR 257 (1483)
T ss_pred EEECCCCCHHHHHHHCHHCC-CCCEEEEEEEEECCCCCCCCCCCCCCCCCH-------H-CEECCHHHHHHHHHHHHHHH
T ss_conf 68846888788867460007-976568899788776788899875026151-------0-32162787888899999975
Q ss_pred CCCC----------------CCCCCHHHH---HHHHHHH---------------CC--CCCCHHHHH-------HHHHHH
Q ss_conf 9824----------------234307898---8989873---------------02--567056899-------998653
Q gi|254780336|r 133 GAIF----------------QSTSDTEVI---LHLIARS---------------QK--NGSCDRFID-------SLRHVQ 169 (488)
Q Consensus 133 g~~f----------------~s~sDTEvI---~~Li~~~---------------~~--~~~~e~i~~-------~l~~l~ 169 (488)
...+ ...|||-.+ +.+|.+. +. ....+.++. .|.-|+
T Consensus 258 e~~l~s~~~~dl~~l~Pii~~~~SDSa~lDn~lElLv~~Grsl~~A~~mliPeAw~~~~~m~~~~rafYeY~s~~mEPWD 337 (1483)
T PRK11750 258 AYKFQTPLLPDLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWD 337 (1483)
T ss_pred HHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 76435865231765287479999817889999999987499889999861870211887789899999999872168777
Q ss_pred CCEEEEEEECCEEEEEEECCCCCEE-EEEECCCEEEEEECCHHCCCCCCCEEE--ECCCCEEEEEEECCC
Q ss_conf 0439999639979999825665415-998269569998612001047874123--317870799940898
Q gi|254780336|r 170 GAYAMLALTRTKLIATRDPIGIRPL-IMGELHGKPIFCSETCALEITGAKYIR--DVENGETIVCELQED 236 (488)
Q Consensus 170 Gayslv~l~~~~l~~~RDp~GiRPL-~~G~~~~~~v~ASEs~Al~~ig~~~ir--dv~PGEiivi~~~~~ 236 (488)
|.-++++-+++.+.+.-|++|+||+ |+--+|+.+++|||+-.++.-..+.++ -+.||+++.+|..+.
T Consensus 338 GPAaI~ftDG~~iga~LDRNGLRP~Ry~iT~D~~vi~aSE~Gvv~~~~~~I~~kgRL~PG~m~~vD~~~G 407 (1483)
T PRK11750 338 GPAGIVMTDGRYAACNLDRNGLRPARYVITKDRLITLASEVGIWDYQPDEVVEKGRVGPGELLVIDTRTG 407 (1483)
T ss_pred CCEEEEEECCCEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHCEECCCCCCCCEEEEECCCC
T ss_conf 8547886069889996036788851578846988999833787679888830457748972689987799
No 39
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.74 E-value=5.3e-16 Score=133.82 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=115.1
Q ss_pred CEEEEEECCCCHHHH---CCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHH---
Q ss_conf 969998048716763---15044432068767898751222689860027867874699719999965508789999---
Q gi|254780336|r 53 NKFHSERHLGLVGDH---FTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLR--- 126 (488)
Q Consensus 53 ~~i~~~K~~GlV~dv---f~~~~~l~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr--- 126 (488)
.+..++|++....++ |.+.. -+.++...++.|.||||+.-+++.-||||- + ++|||+|.-..-.+
T Consensus 173 srtIVYKGml~~~ql~~fY~DL~-d~~~~s~~al~H~RFSTNTfPsW~lAqPfR-------~-laHNGEINTi~GN~nwm 243 (413)
T cd00713 173 SRTIVYKGMLLPEQLGQFYPDLQ-DPRFESAFALVHSRFSTNTFPSWPLAQPFR-------Y-LAHNGEINTIRGNRNWM 243 (413)
T ss_pred CCEEEEECCCCHHHHHHHHHHHC-CCCEEEEEEEEEEECCCCCCCCCCCCCCCH-------H-HHCCCCCHHHHHHHHHH
T ss_conf 14178641257899988616636-976589998788305689999873027550-------0-00276300156579999
Q ss_pred ---HHHHH----------CCCC-CCCCCCHHHH---HHHHHHH---------------C--CCCCCHHHHH-------HH
Q ss_conf ---99986----------4982-4234307898---8989873---------------0--2567056899-------99
Q gi|254780336|r 127 ---KKLIS----------SGAI-FQSTSDTEVI---LHLIARS---------------Q--KNGSCDRFID-------SL 165 (488)
Q Consensus 127 ---~~L~~----------~g~~-f~s~sDTEvI---~~Li~~~---------------~--~~~~~e~i~~-------~l 165 (488)
+...+ -.-. -...|||-.+ +.+|... + .....+.++. .|
T Consensus 244 ~aRe~~~~s~~~~~~~~~l~Pi~~~~~SDSa~lDn~lElL~~~Grsl~~a~~mliPeaw~~~~~m~~~~rafYeY~s~~m 323 (413)
T cd00713 244 RAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLM 323 (413)
T ss_pred HHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf 98777641875302188647876999844668999999997469989999987395634368779999999999998318
Q ss_pred HHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCC-EEEEEECCHHCCCCCCCEEEE---CCCCEEEEEEECCC
Q ss_conf 865304399996399799998256654159982695-699986120010478741233---17870799940898
Q gi|254780336|r 166 RHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHG-KPIFCSETCALEITGAKYIRD---VENGETIVCELQED 236 (488)
Q Consensus 166 ~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~-~~v~ASEs~Al~~ig~~~ird---v~PGEiivi~~~~~ 236 (488)
.-|+|..++++-+++.+.|.=|++|+||+-|..++| .+++|||.-+++. .-+.|.+ +.||+++.+|..+.
T Consensus 324 EPWDGPAai~ftdG~~iga~LDRNGLRP~Ry~iT~D~~~i~aSE~Gvv~~-~~~~v~~kgrL~PG~m~~vD~~~g 397 (413)
T cd00713 324 EPWDGPAAIAFTDGRQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEMLLVDLEEG 397 (413)
T ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCCC-CHHHCEECCCCCCCCEEEEECCCC
T ss_conf 87778758998469889998226889842589974998999816986458-878822136879981699998789
No 40
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.62 E-value=2.5e-14 Score=121.97 Aligned_cols=212 Identities=21% Similarity=0.179 Sum_probs=121.3
Q ss_pred CCEEEEEECCCCHHHH-HHHHHHHHHC---CCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECC
Q ss_conf 5659999818533689-9999987731---58870279999799699980487167631504443206876789875122
Q gi|254780336|r 14 KCGVFGILGHPDAATL-TAIGLHALQH---RGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYS 89 (488)
Q Consensus 14 eCGI~Gi~~~~~~~~~-~~~gL~~LQH---RGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYs 89 (488)
||-++|..++...... ...+.....- .-.||+||+++.++.+..+|+.=-+.+-.........+++...|.|+|.|
T Consensus 1 MCrlLg~~g~~p~~~~~s~~~~~~~~~~~~~h~DGwGia~y~~~~~~~yk~~~P~~~d~~~~~~~~~i~S~~viaHvR~A 80 (252)
T COG0121 1 MCRLLGMHGNPPTDSLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWEDIALLVLAYPIKSELVIAHVRKA 80 (252)
T ss_pred CCEEEEECCCCCCHHHHHHCCCHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCEEEEEEECC
T ss_conf 95462000798303242304553344478879996069997499217971798641264666201135764799997203
Q ss_pred CCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-------CCCCCCHH--
Q ss_conf 268986002786787469971999996550878999999986498242343078988989873-------02567056--
Q gi|254780336|r 90 TTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARS-------QKNGSCDR-- 160 (488)
Q Consensus 90 T~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~-------~~~~~~e~-- 160 (488)
|.|..+.+|+|||..+.....+.+||||.|.++..+ +..+......+|+|.....+..+ ...++.+.
T Consensus 81 t~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~----~~~~~~~~~~tds~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (252)
T COG0121 81 TQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL----EGRKLEPVGYTDSEAAFCGITDSERIFLLILKPGLDALFQ 156 (252)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 788566557898041577740799856802665412----2446678874168899887654455555313777202456
Q ss_pred -HHHHH-----HHHHCCEEEEEEE--------CCEEEEEE--ECCCCCEEEEEECCC--EEEEEECCHHCCCCCCCEEEE
Q ss_conf -89999-----8653043999963--------99799998--256654159982695--699986120010478741233
Q gi|254780336|r 161 -FIDSL-----RHVQGAYAMLALT--------RTKLIATR--DPIGIRPLIMGELHG--KPIFCSETCALEITGAKYIRD 222 (488)
Q Consensus 161 -i~~~l-----~~l~Gayslv~l~--------~~~l~~~R--Dp~GiRPL~~G~~~~--~~v~ASEs~Al~~ig~~~ird 222 (488)
+..+. ....|.+-++... +..++++| |.....-+++....+ ++++|||. |. +.+...+
T Consensus 157 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~viaS~p--lt--~~~~w~~ 232 (252)
T COG0121 157 AEIRALGLFNTLLSDGNYLFALCSTALHLLSRGAPFGAARYLDDDEEPDLYRYTDPGDVVVVIASEP--LT--DNEPWTE 232 (252)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEEECC--CC--CCCCCEE
T ss_conf 7787765467766445633015602442783078246788458866625666157996189997123--55--8988568
Q ss_pred CCCCEEEEEEE
Q ss_conf 17870799940
Q gi|254780336|r 223 VENGETIVCEL 233 (488)
Q Consensus 223 v~PGEiivi~~ 233 (488)
++|||++++..
T Consensus 233 v~~g~~~~v~~ 243 (252)
T COG0121 233 VPPGELVTVKG 243 (252)
T ss_pred CCCCCEEEEEC
T ss_conf 37994899956
No 41
>pfam00156 Pribosyltran Phosphoribosyl transferase domain. This family includes a range of diverse phosphoribosyl transferase enzymes. This family includes: Adenine phosphoribosyltransferase EC:2.4.2.7. Hypoxanthine-guanine-xanthine phosphoribosyltransferase. Hypoxanthine phosphoribosyltransferase EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyltransferase EC:2.4.2.10. Uracil phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis, At the very N-terminus of this domain is the ATP-GTP-binding domain.
Probab=99.12 E-value=3e-10 Score=92.87 Aligned_cols=110 Identities=32% Similarity=0.395 Sum_probs=84.3
Q ss_pred HHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH
Q ss_conf 99999999987---486567720120012047799999981996001001176532101106446777653201343245
Q gi|254780336|r 277 SRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488)
Q Consensus 277 ~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488)
...++++.||+ +...+.|+|+|++..|.+.|...|+++++|+.....+.++.. ....+.............
T Consensus 9 ~~~~~~~~la~~i~~~~~~~d~ivgi~~gG~~~a~~la~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 82 (123)
T pfam00156 9 ELRELIEALAEKIREEGIDPDVIVGIARGGIPLATALARELGIPLVLVRKRISLPS------SIKSRGGESVTLLSRLPE 82 (123)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECHHCHHHHHHHHHHHHCCCEEEEEEEEECCC------CCEEECCCCEEEEECCCC
T ss_conf 99999999999999868999999991118698999999986999489998876377------660551772699842432
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 533893289740353333388899999853997899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
.++||+|++|||-+-.|+|++.++++|+++||+.|++.+
T Consensus 83 ~~~g~~VliVDDv~~tG~Tl~~~~~~l~~~g~~~v~~~v 121 (123)
T pfam00156 83 LLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAV 121 (123)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 369999999848768438999999999947990999999
No 42
>KOG0573 consensus
Probab=99.09 E-value=3.1e-09 Score=85.64 Aligned_cols=164 Identities=22% Similarity=0.300 Sum_probs=106.0
Q ss_pred CCEEEEEECCCCH--HHHHHH-HHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCC
Q ss_conf 5659999818533--689999-9987731588702799997996999804871676315044432068767898751222
Q gi|254780336|r 14 KCGVFGILGHPDA--ATLTAI-GLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYST 90 (488)
Q Consensus 14 eCGI~Gi~~~~~~--~~~~~~-gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT 90 (488)
|||||--+.+... ...+.. +..-+..||+|..+=...+.......- . .. .-.+.| |.|
T Consensus 1 MCGI~~s~~~~~~l~~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f---------~-~~-vL~lrG--------~~t 61 (520)
T KOG0573 1 MCGIFLSVDKDLALNSELISEALGLLIGNRGPDHSSKVCTDGKPYIVLF---------E-SS-VLSLRG--------YLT 61 (520)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEE---------E-CC-EEEEEE--------EEC
T ss_conf 9358986347743211110468887860358971554642566606996---------1-32-699842--------203
Q ss_pred CCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 68986002786787469971999996550878999999986498242343078988989873025670568999986530
Q gi|254780336|r 91 TGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG 170 (488)
Q Consensus 91 ~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~G 170 (488)
.||.+.. ..+.+..||+|+|. ..-.+..||..|+.+++..... ..|.+.++.++|
T Consensus 62 --------~Qpvv~d---~~~vfl~NGeIyn~-----------~~s~~~~d~~~l~~~l~~~~e~---~~Il~~i~~~qG 116 (520)
T KOG0573 62 --------KQPVVED---DRYVFLFNGEIYNG-----------EKSDTLFDTDILAEELSNLKES---GDILDIIKSLQG 116 (520)
T ss_pred --------CCCEECC---CCEEEEECCEECCC-----------CCCCCCCHHHHHHHHHHCCCCC---CCHHHHHHHCCC
T ss_conf --------6841436---64489855553257-----------7763212689999997418765---338899874168
Q ss_pred CEEEEEEEC--CEEEEEEECCCCCEEEEEECCCEEEE--EECCHHCCCCCCCEEEECCCC
Q ss_conf 439999639--97999982566541599826956999--861200104787412331787
Q gi|254780336|r 171 AYAMLALTR--TKLIATRDPIGIRPLIMGELHGKPIF--CSETCALEITGAKYIRDVENG 226 (488)
Q Consensus 171 ayslv~l~~--~~l~~~RDp~GiRPL~~G~~~~~~v~--ASEs~Al~~ig~~~irdv~PG 226 (488)
.||+++... +++|-.||++|.|.|.|+.....+.+ +++-. ....++|++|+
T Consensus 117 p~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g~-----~~~~i~e~~~~ 171 (520)
T KOG0573 117 PWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVGT-----SGKLIYEVPPV 171 (520)
T ss_pred CCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCC-----CCCCCCCCCCH
T ss_conf 72599997047679983165563014677426733677622565-----87501106834
No 43
>KOG0399 consensus
Probab=99.04 E-value=8.2e-09 Score=82.63 Aligned_cols=175 Identities=19% Similarity=0.194 Sum_probs=107.2
Q ss_pred CCEEEEEECCCCHHHH---CCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEEC------CH
Q ss_conf 9969998048716763---15044432068767898751222689860027867874699719999965508------78
Q gi|254780336|r 52 GNKFHSERHLGLVGDH---FTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT------NG 122 (488)
Q Consensus 52 ~~~i~~~K~~GlV~dv---f~~~~~l~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~------N~ 122 (488)
.+.-.++|+.=....+ |.+. .-+.++.+.+|-|.||||+..+++.-+||+- + ++|||+|. |+
T Consensus 255 sn~TIVYKGql~~~ql~~yY~DL-~N~~y~S~~AlvHsRFSTNTfPsWdrAQPmR-------~-l~HNGEINTlrGN~Nw 325 (2142)
T KOG0399 255 SNQTIVYKGQLRPEQLYNYYPDL-TNAEYKSHFALVHSRFSTNTFPSWDRAQPMR-------F-LAHNGEINTLRGNKNW 325 (2142)
T ss_pred CCCEEEEECCCCHHHHHHHCCCC-CCHHHCCCCEEEEECCCCCCCCCCCCCCCCH-------H-HHCCCCEEEECCCHHH
T ss_conf 57548980433789986524100-6554336010254201368898863105320-------1-2216731110251667
Q ss_pred HHHHHHHHHCCCC-----------CCCCCCHHHH---HHHHHHHCCCCCCHH-------------------------HHH
Q ss_conf 9999999864982-----------4234307898---898987302567056-------------------------899
Q gi|254780336|r 123 LTLRKKLISSGAI-----------FQSTSDTEVI---LHLIARSQKNGSCDR-------------------------FID 163 (488)
Q Consensus 123 ~eLr~~L~~~g~~-----------f~s~sDTEvI---~~Li~~~~~~~~~e~-------------------------i~~ 163 (488)
..-|+-+.+.... -...|||-.+ +.|+.++-..+..|+ ..-
T Consensus 326 MraREg~mks~~~~~e~~kl~Pive~~~SDSa~lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~ 405 (2142)
T KOG0399 326 MRAREGVMKSAVFKDELNKLLPIVEEGGSDSAALDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAAC 405 (2142)
T ss_pred HHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 88777765142010145631223467887313466799999980797827989874769770699878788899999860
Q ss_pred HHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEEC-CCEEEEEECCHHCCCCCCCEEE--ECCCCEEEEEEECC
Q ss_conf 998653043999963997999982566541599826-9569998612001047874123--31787079994089
Q gi|254780336|r 164 SLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGEL-HGKPIFCSETCALEITGAKYIR--DVENGETIVCELQE 235 (488)
Q Consensus 164 ~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~-~~~~v~ASEs~Al~~ig~~~ir--dv~PGEiivi~~~~ 235 (488)
.|.-|+|.--+.+.++..+=|.-|++|.||--|..+ ++..++|||--..+.--...++ -+.||-++.+|...
T Consensus 406 ~MEpWDGPALl~FsDGry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD~~~ 480 (2142)
T KOG0399 406 QMEPWDGPALLTFSDGRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVDTEL 480 (2142)
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHCCCCCCCEEEEEECCC
T ss_conf 278888866898517854543413578864036983198799952045557987996431676887189998437
No 44
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=98.94 E-value=6.9e-09 Score=83.17 Aligned_cols=99 Identities=21% Similarity=0.311 Sum_probs=78.8
Q ss_pred CCCCCCCCC-----------CCHHHHHHHHHHHCCCCEE-HHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCC
Q ss_conf 677201200-----------1204779999998199600-1001176532101106446777653201343245533893
Q gi|254780336|r 292 IADIVVPIP-----------DGGVPAAIGYAKESGIPFE-QGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359 (488)
Q Consensus 292 ~~DiV~~VP-----------dsg~~aA~gya~~~gip~~-~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~ 359 (488)
.+|+|+||| |-+..-|.+.|+.+++||. ..|.|.+.. .+=-.-+.++|...++--|.. ++-++||+
T Consensus 112 ~~D~IvPVPlh~~R~~~RGfNQa~~lA~~la~~l~~p~~~~~L~R~r~t-~~Q~~ls~~~R~~Nv~~aF~~-~~~~~g~~ 189 (227)
T PRK11595 112 LPDRIVSVPLWQRRHWRRGFNQSDLLCRPLAHWLGCDYDSETLTRTRAT-ATQHFLSARLRKRNLKNAFRL-ELPVQGQH 189 (227)
T ss_pred CCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHEECCCC-CCCCCCCHHHHHHHHHCCEEC-CCCCCCCE
T ss_conf 8784872389989998737888999999999983899630132313587-674568999998654288784-57889697
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 289740353333388899999853997899996
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
|+||||=+-.|.|+....+.|++|||++|++-.
T Consensus 190 vlLVDDV~TTGaTl~~~a~~L~~aGa~~V~v~~ 222 (227)
T PRK11595 190 MVIVDDVVTTGSTVAEIAQLLLRNGAATVQVWC 222 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999620146399999999999980998799999
No 45
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=98.71 E-value=4e-07 Score=70.59 Aligned_cols=151 Identities=18% Similarity=0.307 Sum_probs=93.3
Q ss_pred EEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH-HHCCCCCCHHHH
Q ss_conf 8751222689860027867874699719999965508789999999864982423430789889898-730256705689
Q gi|254780336|r 84 GHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIA-RSQKNGSCDRFI 162 (488)
Q Consensus 84 GHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~-~~~~~~~~e~i~ 162 (488)
|+.-|+.+..+. .+|=..--.+ +|.-.+-|.|.|...|++++ |.. .+-.|+++-+=+ +-+.+.-.----
T Consensus 50 ~~lAys~~~~~~---l~pR~F~~~D-dIfClF~G~LdNl~~L~qqY---GLs---K~aNE~~~vIEAYrtLRDRgPYPad 119 (224)
T cd01910 50 GFLAYSHHNQSP---LHPRLFAVKD-DIFCLFQGHLDNLGSLKQQY---GLS---KTANEAMLVIEAYRTLRDRGPYPAD 119 (224)
T ss_pred EEEEEECCCCCC---CCCCCEECCC-CEEEEEECCHHHHHHHHHHH---CCC---CCCCEEEEHHHHHHHHHCCCCCCHH
T ss_conf 367876589987---7762101117-87999866333388899986---736---6654364628778764147999889
Q ss_pred HHHHHHHCCEEEEEEEC--CEEEEEEECCCCCEEEEEECCCE-EEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEE
Q ss_conf 99986530439999639--97999982566541599826956-9998612001047874123317870799940898479
Q gi|254780336|r 163 DSLRHVQGAYAMLALTR--TKLIATRDPIGIRPLIMGELHGK-PIFCSETCALEITGAKYIRDVENGETIVCELQEDGFI 239 (488)
Q Consensus 163 ~~l~~l~Gayslv~l~~--~~l~~~RDp~GiRPL~~G~~~~~-~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~ 239 (488)
.++++|+|.|++++.+. +.++++||+.|..||+||...|+ .+||+|.-+|..-=++-.---.||.+. .+..|.+
T Consensus 120 qVv~dL~G~FAFVlyD~~~~t~f~A~D~~G~vPLywG~~aDGsv~~Sdd~~~lk~~C~ksfapFP~Gc~f---~S~gGL~ 196 (224)
T cd01910 120 QVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFF---HSEGGLR 196 (224)
T ss_pred HHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHCCCCCCCCCEE---ECCCCEE
T ss_conf 9997547727999997788819998678997321798868855999556888875451124889998417---6686502
Q ss_pred EEEEEECCCCC
Q ss_conf 98753077656
Q gi|254780336|r 240 SIDSYKNPSTS 250 (488)
Q Consensus 240 ~i~~~~~~~~~ 250 (488)
+ |..|..+
T Consensus 197 s---fehP~nk 204 (224)
T cd01910 197 S---FEHPMNK 204 (224)
T ss_pred E---CCCCHHH
T ss_conf 0---4173621
No 46
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.63 E-value=2.1e-07 Score=72.60 Aligned_cols=123 Identities=23% Similarity=0.386 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC---CCCC------CEEEECC
Q ss_conf 0003728999999999999874-8656772012001204779999998199600100117---6532------1011064
Q gi|254780336|r 267 SIISGRSIYVSRRNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN---HYVG------RTFIEPS 336 (488)
Q Consensus 267 S~~~g~~Vy~~R~~lG~~La~~-~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn---~y~g------RtFI~p~ 336 (488)
|.+-++--.++-..|.+.||++ .+.+.|||+|.|--|++-|...|+++|..=--.|-+. +|.. ++.-.|+
T Consensus 58 SLivNqAs~~V~daLA~~lA~k~~~~~pdvv~GlpTLGl~lA~~Var~LG~~rYVplg~SrKfwy~d~Ls~~vsSITtp~ 137 (233)
T PRK06031 58 SLIVNQASFAVLDALAEELAAKARPFRPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYDDELSVPLSSITTPD 137 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHCCCEECCCCCC
T ss_conf 87742126899999999999874156986787146554045899999709763676564775331344355100035888
Q ss_pred HHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 467776532013432455338932897403533333888999998539978999965
Q gi|254780336|r 337 HHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 337 ~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
|.-|-. +--. +-..++||||+||||-|-.|+|++.-.++|..+|+.-|-+.++
T Consensus 138 ~~krly-lDp~---~lpLl~GrRV~lVDDVISSG~Si~a~l~LL~~~G~e~v~igva 190 (233)
T PRK06031 138 QGKRLY-IDPR---MLPLLRGRRVALIDDVISSGASIVAALRLLATCGIEPAGIGAA 190 (233)
T ss_pred CCCEEE-ECHH---HHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 773156-7744---4124328779998212215565999999999759973788763
No 47
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.49 E-value=1e-06 Score=67.69 Aligned_cols=116 Identities=30% Similarity=0.452 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC-----------------------CCCC
Q ss_conf 9999999998748----656772012001204779999998199600100117-----------------------6532
Q gi|254780336|r 277 SRRNMGKNLAKES----PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN-----------------------HYVG 329 (488)
Q Consensus 277 ~R~~lG~~La~~~----~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn-----------------------~y~g 329 (488)
=|..-|++||++- ..+.-+|.+.|-.|+|-|...|+.+|.|+.-.++|. .-+-
T Consensus 6 DR~dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~ 85 (220)
T COG1926 6 DRTDAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVV 85 (220)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHCEEEECCCCCEECCHHHH
T ss_conf 08899999999998533379837997468871679999998699736999963489998223036652699675106666
Q ss_pred CEEEECCHH------------HHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 101106446------------7776532013432455338932897403533333888999998539978999965
Q gi|254780336|r 330 RTFIEPSHH------------IRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 330 RtFI~p~~~------------~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
++|=...+. +|.+..-.+-||..+ ++||.|+||||-|-.|.||+.-++.+|..++++|.+.+.
T Consensus 86 ~~~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~-~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVP 160 (220)
T COG1926 86 RSLGIDDAYIEAAAARERKELLRRREAYRGGRPVPS-LKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVP 160 (220)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 634689999999999999999999999728899878-888989997077212077999999998628860899844
No 48
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=98.43 E-value=2.6e-06 Score=64.87 Aligned_cols=109 Identities=24% Similarity=0.257 Sum_probs=72.8
Q ss_pred HHHHHHHHHC---CCCCCCCCCCCCCHH-----------HHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHH
Q ss_conf 9999998748---656772012001204-----------77999999819960010011765321011064467776532
Q gi|254780336|r 280 NMGKNLAKES---PVIADIVVPIPDGGV-----------PAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVK 345 (488)
Q Consensus 280 ~lG~~La~~~---~~~~DiV~~VPdsg~-----------~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~ 345 (488)
-+++.|++.. ..+.|.++|||=|-. .-|...+..+|+|+ .+.+.+..-...=. +..+|.+.++
T Consensus 96 ~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~--~l~r~k~~~~q~~l-~~~~rr~nl~ 172 (225)
T COG1040 96 LLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPI--ALRRVKDTSPQQGL-KALERRRNLK 172 (225)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCH--HHEECCCCCCCCCC-CHHHHHHHCC
T ss_conf 99999999865113466759973698778874687899999999877647642--11000067310045-5589998460
Q ss_pred HCCCCCHHHHCC-CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 013432455338-93289740353333388899999853997899996
Q gi|254780336|r 346 LKHSANRTILAG-KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 346 ~K~~~~~~~i~g-k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
-.|.. +..++. |+|+||||=+-.|+|++.+.+.|+++||++|-+-.
T Consensus 173 ~aF~~-~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~ 219 (225)
T COG1040 173 GAFRL-KKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLT 219 (225)
T ss_pred CCEEC-CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 56314-787676772899940066679999999999975991699999
No 49
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=98.42 E-value=1.9e-06 Score=65.79 Aligned_cols=114 Identities=23% Similarity=0.348 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCC-CCCCEEEECCHHHHHHHHH-HCCC-CCHHH
Q ss_conf 9999999987486567720120012047799999981996001001176-5321011064467776532-0134-32455
Q gi|254780336|r 278 RRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNH-YVGRTFIEPSHHIRAFGVK-LKHS-ANRTI 354 (488)
Q Consensus 278 R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~-y~gRtFI~p~~~~R~~~v~-~K~~-~~~~~ 354 (488)
=+++++.||++-|-+.|+|+++.-.|++-|...|+.+|+||.-.=-+.+ |.+...+...+..--...+ +-+. .....
T Consensus 38 ~~~~a~~la~~~p~~vD~Ivt~EarGiplA~~lA~~Lg~p~V~vRK~~K~ym~~~~~~~~~Sitt~~~q~l~ld~~~~~~ 117 (178)
T PRK07322 38 TEAAAEALAPRLPTEVDVLVTAEAKGIPLAHELSRILGLPYVVARKSVKPYMQDPLIQEVLSITTGKPQLLVLDGADAEK 117 (178)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEECHHHHH
T ss_conf 99999999976799887999864314588999999979998999857876788877899888750455389850002211
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3389328974035333338889999985399789999
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
++|+||++|||=|=.|-|++...++++++||.-|-+.
T Consensus 118 l~G~rVlivDDvi~tGgt~~a~~~l~~~~Ga~vvg~~ 154 (178)
T PRK07322 118 LKGKRVAIVDDVVSTGGSLTAMERLVERAGGEVVAKA 154 (178)
T ss_pred CCCCEEEEEEEHHHCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 3798599996344238379999999998699899999
No 50
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.37 E-value=4.9e-06 Score=62.89 Aligned_cols=133 Identities=23% Similarity=0.318 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHHHHHC
Q ss_conf 03728999999999999874865677201200120477999999819960010011-76532101106446777653201
Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLK 347 (488)
Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~v~~K 347 (488)
+....+.+.=.+|+.++.+...-+.-++++|.+.|.+.+--..++++.|.+.-+++ ..|.|.+ . + -.++++
T Consensus 17 is~eeI~~rI~~lA~~I~~~y~~~~~viI~vL~Ga~~F~adL~r~l~~~~~vdfi~~sSY~~~~--s-s-----g~v~~~ 88 (181)
T PRK09162 17 VSAAEVEAAIDRMADEITADLADENPLVLCVMNGGLVFTGQLLPRLDFPLEFDYLHATRYRNET--T-G-----GELVWK 88 (181)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEECCCCCC--C-C-----CCEEEE
T ss_conf 6799999999999999999828998489999578499999999857998377777861248977--5-7-----847997
Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--C---C--CCCCCCCCEECCCH
Q ss_conf 34324553389328974035333338889999985399789999658--9---8--05886565005897
Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS--P---M--VLYPDFYGIDIPDP 410 (488)
Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s--P---p--i~~pc~yGid~p~~ 410 (488)
..+ ...++||.|++|||=+=.|.|++.++..|+..||++|.++.-- | . -..|.|.|.++|..
T Consensus 89 ~~~-~~~i~gk~VLiVeDIvDTG~Tl~~l~~~l~~~gp~Svki~~LldK~~~r~~~~~~~Dy~Gf~i~d~ 157 (181)
T PRK09162 89 VKP-RESLKGRTVLVVDDILDEGHTLAAIRDWCLEMGAAEVYSAVLVDKTHDRKAPPLKADFVGLEVPDR 157 (181)
T ss_pred ECC-CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCE
T ss_conf 357-756689869999318762799999999997049988999999965614537999975799984991
No 51
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.22 E-value=6.5e-06 Score=62.01 Aligned_cols=108 Identities=25% Similarity=0.405 Sum_probs=77.2
Q ss_pred HHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC-CEEEECCHHHHHHHHHHCCCCCHHHH-
Q ss_conf 9999999874865-67720120012047799999981996001001176532-10110644677765320134324553-
Q gi|254780336|r 279 RNMGKNLAKESPV-IADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG-RTFIEPSHHIRAFGVKLKHSANRTIL- 355 (488)
Q Consensus 279 ~~lG~~La~~~~~-~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g-RtFI~p~~~~R~~~v~~K~~~~~~~i- 355 (488)
..++ .+++..+- +.|.|+++.-.|++-|...|.++|+||...- |.++.. .++....+ +... ..++-..+..+
T Consensus 40 ~~i~-~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR-K~~kl~~~~~~~~~~--~~~~-~~~l~~~~~~l~ 114 (179)
T COG0503 40 KLID-ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR-KKGKLPEESVVETYY--LEYG-SETLELHKDALK 114 (179)
T ss_pred HHHH-HHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEE-ECCCCCCCCEEEEEE--ECCC-EEEEEEEHHHCC
T ss_conf 9999-9999840059989999737784049999998599889999-568788643578998--6064-179998720068
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 389328974035333338889999985399789999
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
+|+||++|||=+-.|-|.+.++++++++||.=+.+.
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~ 150 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAA 150 (179)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999899996540156789999999998899899999
No 52
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.19 E-value=5.2e-06 Score=62.67 Aligned_cols=149 Identities=21% Similarity=0.208 Sum_probs=94.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 99999987486567720120012047-79999998199600100117653210110644677765320134324553389
Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGK 358 (488)
Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk 358 (488)
-+...+.++.....|.|+--||.|-. -|..||+.+|.||.- +-|.|..++. + ......+-..++||
T Consensus 152 ~~~~~i~~~~~~~~~~vvVsPD~G~~~ra~~~A~~l~~~~~~-~~K~R~~~~~----~--------~~~~~~~~gdV~Gk 218 (321)
T PRK02269 152 LIADYFDRHGLVGEDVVVVSPDHGGVTRARKLAQFLKTPIAI-IDKRRSVDKM----N--------TSEVMNIIGNVSGK 218 (321)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEE-EEEECCCCCC----C--------CEEECCCCCCCCCC
T ss_conf 999999984798767089717931999999999862787899-9987368988----7--------43420357740697
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECH
Q ss_conf 32897403533333888999998539978999965898058865650058978885466999889998709977888339
Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSV 438 (488)
Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~ 438 (488)
.+|+|||=|=.|.|+-..++.|++.||++|++..+-+=...++.-=|.-+.-++++.-+ |+. ..+..-++-+.-+|+
T Consensus 219 ~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~rl~~s~i~~ivvTd--Ti~-~p~~~~~~ki~~lsv 295 (321)
T PRK02269 219 KCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLSGPALDNIQKSAIEKLIVLD--TIY-LPEERLIDKIEQISI 295 (321)
T ss_pred EEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEC--CCC-CCHHHCCCCCEEEEH
T ss_conf 69996624314266999999998489982799997802784799998608998899808--977-864455898289876
Q ss_pred HHHHHH
Q ss_conf 899986
Q gi|254780336|r 439 DGLYNA 444 (488)
Q Consensus 439 e~l~~a 444 (488)
..|...
T Consensus 296 a~llAe 301 (321)
T PRK02269 296 ADLVAE 301 (321)
T ss_pred HHHHHH
T ss_conf 899999
No 53
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=98.17 E-value=1.3e-05 Score=59.94 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=88.2
Q ss_pred EEEEHHCCCCCCCCCCCHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEE
Q ss_conf 00001002474300037289999--9999999987486567720120012047799999981996001001176532101
Q gi|254780336|r 255 CIFEYVYFARPDSIISGRSIYVS--RRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTF 332 (488)
Q Consensus 255 C~FEyIYFarpdS~~~g~~Vy~~--R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtF 332 (488)
-.|+|-||.+|=| ||+..-+- =+..-....+..+.+.|.++++.-.|+|-|...|...|+|+.- +|-|..| ++
T Consensus 11 ~~g~~~~~ihpit--DgvP~l~p~~l~~i~~~ii~~~D~~iDkIv~iEa~GipiatalSl~t~iPlvi--iRKr~yg-l~ 85 (184)
T PRK12560 11 NSGKALTTVNEFT--DQLPALRPAVLLEVAHKVIQIIDMDIDKIVTEEDKGAPLATAVSLLSGKPLAM--ARWYPYS-LS 85 (184)
T ss_pred ECCCCCEEECCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCHHHHHHHHHHCCCEEE--EECCCCC-CC
T ss_conf 5065424756766--88757798999999999998616687689741335638899999975998899--9814678-88
Q ss_pred ----EECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf ----106446777653201343245533893289740353333388899999853997899996
Q gi|254780336|r 333 ----IEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 333 ----I~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
..-+|..-.....+- +..+-+|+||++|||=+-.|-|+...+++++++||.=+.+.+
T Consensus 86 ~~~e~~~~~~Tgys~g~iy---~n~I~~GdrVlIVDDvlaTGGTl~a~~~ll~~~Ga~V~~i~~ 146 (184)
T PRK12560 86 ELNNNVVNISSEYFEGVVY---LNGISAGDRVAIIDDTLSTGGTVIALIKAIQNSGGIVKDLIC 146 (184)
T ss_pred CCCEEEEEEECCEEEEEEE---ECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 7852888751555776897---046799998999951205675899999999986998999999
No 54
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.16 E-value=1.2e-05 Score=60.01 Aligned_cols=110 Identities=28% Similarity=0.281 Sum_probs=76.7
Q ss_pred HHHHHHHHH-HHHHHH-----HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHH-HH
Q ss_conf 289999999-999998-----74865677201200120477999999819960010011765321011064467776-53
Q gi|254780336|r 272 RSIYVSRRN-MGKNLA-----KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAF-GV 344 (488)
Q Consensus 272 ~~Vy~~R~~-lG~~La-----~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~-~v 344 (488)
+.+...|.+ ++..|| ++...+.|+|+|+--+|+|.|--.|.+++..+.-.-=+- | .++. .-
T Consensus 61 ig~~~~Rl~~Ia~~maD~~~e~~~~~evD~vvGIa~~GIPlAt~vA~~l~~~l~iy~P~k------~------~~~e~~~ 128 (201)
T PRK02277 61 VGKSSSRLRYIALAMADMLLLNKEGVEVDVVVGIAISGVPLATLMADELGKDLAIYHPKK------H------QHDEGKK 128 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCC------C------CCCCCCC
T ss_conf 577778999999999999987533787647987523684189999998527611561355------5------6666787
Q ss_pred HHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 2013432455338932897403533333888999998539978999965
Q gi|254780336|r 345 KLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 345 ~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+=-++-+-..++||+|++|||=|-.|+|++..++.||++||+-|-+.+.
T Consensus 129 ~G~~s~nfa~V~Gk~VlIVDDViTTG~T~~e~ie~l~~~Ga~vv~~~Vl 177 (201)
T PRK02277 129 TGSISRNFASVAGKRCVIVDDVITSGNTMKETIEYLKEHGAKPVAVVVL 177 (201)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEE
T ss_conf 7621341034378789999702377824999999999869979999999
No 55
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.12 E-value=1.4e-05 Score=59.71 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=83.2
Q ss_pred HHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC-CEEEECCHHHHHHHHHHCCCCCHHHHC
Q ss_conf 99999998748-6567720120012047799999981996001001176532-101106446777653201343245533
Q gi|254780336|r 279 RNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG-RTFIEPSHHIRAFGVKLKHSANRTILA 356 (488)
Q Consensus 279 ~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g-RtFI~p~~~~R~~~v~~K~~~~~~~i~ 356 (488)
..+|+.+|.+. ..+.|.|+.++.+|+|-|..-|..++.|+.-+= |.+.++ -+|+...+......+..=+-|-+..=+
T Consensus 97 ~l~~~~~a~rF~~~~idkVlT~at~GIplA~~~A~~l~vplviak-k~k~~~~~~~~~~~v~~~~~~~~tl~l~k~~l~~ 175 (238)
T PRK08558 97 RLYEEYVAERFMGLRVDKVLTAATDGIPLAVAAASRFGADLVYAK-QYKEPGVEKFYEEYQYLASGRPVTLYLPAWALKR 175 (238)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE-ECCCCCCCCEEEEEEECCCCCEEEEEEEHHHCCC
T ss_conf 999999999817789858998468885399999998099789998-1367774652899997489957999955899799
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8932897403533333888999998539978999
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
|.+|++|||=+-.|-|++.++++++++||.=+-+
T Consensus 176 g~~VLIVDD~~~tG~T~~~~~~l~~~~ga~v~G~ 209 (238)
T PRK08558 176 GERVLIVDDIIRSGETQRALLELCRQAGADVVGV 209 (238)
T ss_pred CCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9869998356343738999999999869979999
No 56
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.11 E-value=2.8e-05 Score=57.43 Aligned_cols=130 Identities=30% Similarity=0.457 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC----CCCCCEEEECCHHHHHHHHHHCCCC
Q ss_conf 999999999987486-56772012001204779999998199600100117----6532101106446777653201343
Q gi|254780336|r 276 VSRRNMGKNLAKESP-VIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN----HYVGRTFIEPSHHIRAFGVKLKHSA 350 (488)
Q Consensus 276 ~~R~~lG~~La~~~~-~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn----~y~gRtFI~p~~~~R~~~v~~K~~~ 350 (488)
+.+..+++.|++.-. .+.|.|+|+|-.|+|.|...|..+++|+- +++. +-.+|.|
T Consensus 45 ~~~~~i~~~~~~~i~~~~~d~I~G~a~ggipia~~ia~~l~~p~~--~~Rke~K~hG~~~~i------------------ 104 (200)
T PRK00455 45 EALALLGRFLAEAIKDSGIDFVAGPATGGIPLAAAVARALDLPMI--FVRKEAKDHGEGRQI------------------ 104 (200)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCEE--EEECCCCCCCCCCEE------------------
T ss_conf 999999999999975449989973331068999999997299879--997057755658666------------------
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 24553389328974035333338889999985399789999658980588656500589788854669998899987099
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGV 430 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~iga 430 (488)
.-+..+|++|++|||=|-.|+++...++.|+++|++=+.+.+- + +|++ ...++..+..|+
T Consensus 105 eG~~~~g~~VliVeDViTtG~S~~~ai~~l~~~G~~V~~v~vi-----------v---DR~~------~~~~~~~~~~gi 164 (200)
T PRK00455 105 EGALLKGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVI-----------V---DREL------SAAQEVEADAGV 164 (200)
T ss_pred ECCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEEEE-----------E---ECCC------HHHHHHHHHCCC
T ss_conf 4244554534887630104701999999999879979999999-----------9---5673------566778986599
Q ss_pred CEEEEECHHHHHHHH
Q ss_conf 778883398999861
Q gi|254780336|r 431 DSLGFLSVDGLYNAI 445 (488)
Q Consensus 431 dsl~yls~e~l~~ai 445 (488)
.-..-++++++..+.
T Consensus 165 ~l~sl~tl~~~~~~~ 179 (200)
T PRK00455 165 PLISLITLDDLLEYA 179 (200)
T ss_pred CEEEEEEHHHHHHHH
T ss_conf 789997638989989
No 57
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=98.06 E-value=1e-05 Score=60.57 Aligned_cols=96 Identities=28% Similarity=0.317 Sum_probs=70.0
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHH
Q ss_conf 74865677201200120477999999819960010011765321011064467776532013432455338932897403
Q gi|254780336|r 287 KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDS 366 (488)
Q Consensus 287 ~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDS 366 (488)
++...+.|+|+|+--||+|.|--.|.++|..+.-. .-|-+....+ ....=-++-.=.-++|||+++|||-
T Consensus 81 ~~~~~evDvVvGIa~sGvPlAt~vA~elg~elaiY------~PrK~~~de~----~~~~G~iS~NFasV~gK~cvIVDDv 150 (203)
T COG0856 81 EKVSFEVDVVVGIAISGVPLATMVAYELGKELAIY------HPRKHRKDEG----AGKGGSISSNFASVEGKRCVIVDDV 150 (203)
T ss_pred HHHCCCEEEEEEEEECCCCHHHHHHHHHCCCEEEE------ECCCCCCCCC----CCCCCEEECCCCCCCCCEEEEEECC
T ss_conf 86054046899885068628999999737846998------1356654335----7767623123211157548998322
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 53333388899999853997899996
Q gi|254780336|r 367 IVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 367 IVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
|-.|+|++..|+-|++.|+|-+-+.+
T Consensus 151 ittG~Ti~E~Ie~l~e~g~kPv~v~V 176 (203)
T COG0856 151 ITTGSTIKETIEQLKEEGGKPVLVVV 176 (203)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 25672199999999975997479999
No 58
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=98.03 E-value=3.1e-05 Score=57.13 Aligned_cols=111 Identities=17% Similarity=0.325 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCC--CCEEEEC----C-HHHHHHHHHHCC
Q ss_conf 9999999998748-656772012001204779999998199600100117653--2101106----4-467776532013
Q gi|254780336|r 277 SRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYV--GRTFIEP----S-HHIRAFGVKLKH 348 (488)
Q Consensus 277 ~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~--gRtFI~p----~-~~~R~~~v~~K~ 348 (488)
.=.++|+.+|+.. +.++|.|+.+--||+|-|...|.++|+|+.-+=-++++. +-++... | +......+.
T Consensus 34 l~~~iG~~fa~~F~~~~IdkIvTiEasGI~~A~~~A~~l~vPlV~aRK~~~~t~~~~~~~~~v~S~Tk~~~~~~~vs--- 110 (189)
T PRK09219 34 LMNEIGKEFARRFKDAGITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLTLTDNVYTATVYSFTKQVTSTVSVS--- 110 (189)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEEE---
T ss_conf 99999999999845789988999841585789999998599999997368867889768999993156708999974---
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 43245533893289740353333388899999853997899996
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
-+..-+|.||++|||=+-.|-|++.++++++++||.=+-+.+
T Consensus 111 --k~~l~~gdrVliIDDflatGgt~~~~~~l~~~~ga~v~g~~~ 152 (189)
T PRK09219 111 --KKFLSEEDKVLIIDDFLANGQAALGLIDIIEQAGAEVAGVGI 152 (189)
T ss_pred --HHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf --654799875998745454467899999999987998999999
No 59
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.02 E-value=2e-05 Score=58.51 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=87.6
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCE
Q ss_conf 999987486567720120012047-7999999819960010011765321011064467776532013432455338932
Q gi|254780336|r 282 GKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360 (488)
Q Consensus 282 G~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~v 360 (488)
...+.+......|+|+=-||.|-. -|..+|+.+|.|+.- +-|-|. .. .|.. ..+-..++||.+
T Consensus 158 ~~~~~~~~~~~~~~vvVsPD~G~~~ra~~~A~~L~~~~~~-i~k~r~------~~---~~~~------~~ivgdV~Gr~v 221 (323)
T PRK02458 158 AEHYSKLGLSGSDVVVVSPKNSGIKRARSLAEYLDSPIAI-IDYAQD------DS---EREE------GYIIGDVSGKKA 221 (323)
T ss_pred HHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEE-EEEECC------CC---CCCE------EEECCCCCCCEE
T ss_conf 9999983799767089757830568899999860587137-986216------89---7412------231366689667
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHH
Q ss_conf 89740353333388899999853997899996589805886565005897888546699988999870997788833989
Q gi|254780336|r 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDG 440 (488)
Q Consensus 361 vlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~ 440 (488)
|+|||=|=.|.|+-..++.|+++||++|++..+-|=...++.-=+.-+.-++++.-+ |+. ..+.. .+-|..+|+..
T Consensus 222 IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTn--Ti~-~~~~~-~~ki~vlsva~ 297 (323)
T PRK02458 222 ILIDDILNTGKTFAEAAKILERSGATEIYAVASHGLFAGGAAEVLETAPIKEILVTD--SVK-TKERV-PKNVTYLSASE 297 (323)
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEECC--CCC-CHHHC-CCCCEEEEHHH
T ss_conf 876202322488999999999649976899997642570799998649986899858--978-72244-89888987799
Q ss_pred HHH
Q ss_conf 998
Q gi|254780336|r 441 LYN 443 (488)
Q Consensus 441 l~~ 443 (488)
|..
T Consensus 298 llA 300 (323)
T PRK02458 298 LIA 300 (323)
T ss_pred HHH
T ss_conf 999
No 60
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=98.01 E-value=5.6e-05 Score=55.35 Aligned_cols=132 Identities=14% Similarity=0.185 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC---CCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf 99999999998748-656772012001204779999998199600100117---65321011064467776532013432
Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN---HYVGRTFIEPSHHIRAFGVKLKHSAN 351 (488)
Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn---~y~gRtFI~p~~~~R~~~v~~K~~~~ 351 (488)
+.++.++..+++.. ..+.|+|+|+|=.|+|.|...|..+++|+. ++|. ++-.+.+|+- -
T Consensus 50 ~~~~~i~~~~~~~~~~~~~d~i~Gv~~ggip~A~~ia~~~~~P~~--~vRke~K~~g~~~~i~i---------------E 112 (206)
T PRK13809 50 EVLQTVATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMV--LRRKELQNVDPSDAIKV---------------E 112 (206)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCEE--EEECCCCCCCCCCEEEE---------------C
T ss_conf 999999999999862558678984313389999999986099838--87445456786760253---------------3
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 45533893289740353333388899999853997899996589805886565005897888546699988999870997
Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVD 431 (488)
Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igad 431 (488)
....+|++|++|||=|-.|+++...++.||++|+.=+.+.+ + + +|+| ...| --+..|..
T Consensus 113 G~~~~G~kVvvIEDViTTGgSil~ai~~lr~~G~~V~~v~v----i-------v---DRee------gg~e-~l~~~Gi~ 171 (206)
T PRK13809 113 GLFTPGQTCLVINDMVSSGKSIIETAVALEENGLVVREALV----F-------L---DRRK------EACQ-PLGPQGIK 171 (206)
T ss_pred CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEE----E-------E---ECCC------CHHH-HHHHCCCC
T ss_conf 57789988999973344680099999999987996999999----9-------9---2651------6799-99977991
Q ss_pred EEEEECHHHHHHHH
Q ss_conf 78883398999861
Q gi|254780336|r 432 SLGFLSVDGLYNAI 445 (488)
Q Consensus 432 sl~yls~e~l~~ai 445 (488)
-..-.++++|.+..
T Consensus 172 l~sl~t~~~ll~~l 185 (206)
T PRK13809 172 VSSVFTVPTLIKAL 185 (206)
T ss_pred EEEECCHHHHHHHH
T ss_conf 89967799999999
No 61
>PRK03675 consensus
Probab=98.01 E-value=2.6e-05 Score=57.64 Aligned_cols=87 Identities=22% Similarity=0.398 Sum_probs=66.4
Q ss_pred CCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHH
Q ss_conf 20120012047-79999998199600100117653210110644677765320134324553389328974035333338
Q gi|254780336|r 295 IVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTS 373 (488)
Q Consensus 295 iV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~ 373 (488)
+|+ -||.|-. -|..+|+.+|.+|.. +-|.|...+. + +..++-..++||.+|+|||=|=.|.|+
T Consensus 154 vVV-sPD~G~~~ra~~~A~~lg~~~~~-~~K~R~~~~~------------v--~~~~~~~dV~Gk~vIIVDDiIdTGgTl 217 (279)
T PRK03675 154 LVL-APDKGALERAKAVAEVLGLEYSH-FEKERISPTE------------V--EMTPVDVDVKGKNVLIVDDIISTGGTM 217 (279)
T ss_pred EEE-ECCCCHHHHHHHHHHHHCCCEEE-EEECCCCCCC------------E--EECCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 899-78988899999999861786578-8732678982------------1--652555554796799974510252789
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 889999985399789999658980
Q gi|254780336|r 374 VKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 374 k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
-...+.|+++||++|++..+-|=.
T Consensus 218 ~~aa~~Lk~~GA~~V~~~aTHglf 241 (279)
T PRK03675 218 IRAAEILRKLGAKKIFVVATHGVF 241 (279)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 999999997699869999978106
No 62
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=97.99 E-value=0.00011 Score=53.20 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHHHC----CCCEEHHEECCCCCCCEEEECCHHHHH
Q ss_conf 0003728999999999999874865-67720120012047799999981----996001001176532101106446777
Q gi|254780336|r 267 SIISGRSIYVSRRNMGKNLAKESPV-IADIVVPIPDGGVPAAIGYAKES----GIPFEQGIIRNHYVGRTFIEPSHHIRA 341 (488)
Q Consensus 267 S~~~g~~Vy~~R~~lG~~La~~~~~-~~DiV~~VPdsg~~aA~gya~~~----gip~~~~lvkn~y~gRtFI~p~~~~R~ 341 (488)
-+++...+...=.||..++.+...- +.=+++|++.-|.+-|.-.++.+ +++...+.+. =||=-.+...+.
T Consensus 5 ~il~~~~I~~~i~RlA~qI~E~~~~~~~lvlvGI~~~G~~lA~rL~~~L~~~~~~~~~~~~ld-----it~yRDD~~~~~ 79 (176)
T PRK05205 5 EILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEELEGVDVPVGELD-----ITLYRDDLTKKG 79 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEE-----EEEEECCCCCCC
T ss_conf 856999999999999999998679988679999878899999999999878768987246888-----788731523357
Q ss_pred HHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECC------CCCCCCCCCCEECCCH-HHH
Q ss_conf 6532013432455338932897403533333888999998539-9789999658------9805886565005897-888
Q gi|254780336|r 342 FGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVAS------PMVLYPDFYGIDIPDP-TAL 413 (488)
Q Consensus 342 ~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~s------Ppi~~pc~yGid~p~~-~eL 413 (488)
..-..+-+-++.-++||.||||||=+=.|.|++..+..|...| |++|.+++== =| +.|.|-|+.+||. +|-
T Consensus 80 ~~~~~~~~~i~~~~~gk~ViLVDDVL~TGrTlraal~~l~~~grP~~I~lavLVDR~hr~~P-I~aD~vG~~l~t~~~e~ 158 (176)
T PRK05205 80 LHPQVKPTDIPFDIEGKTVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRGHRELP-IRADYVGKNIPTSRDER 158 (176)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC-CCCCEEEEECCCCCCCE
T ss_conf 88755554576444788899983102236899999998863698867999999908997368-36887875726899987
Q ss_pred HH
Q ss_conf 54
Q gi|254780336|r 414 LA 415 (488)
Q Consensus 414 ia 415 (488)
+.
T Consensus 159 V~ 160 (176)
T PRK05205 159 VK 160 (176)
T ss_pred EE
T ss_conf 99
No 63
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.98 E-value=3.3e-05 Score=56.99 Aligned_cols=92 Identities=24% Similarity=0.395 Sum_probs=66.8
Q ss_pred CCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 720120012047-7999999819960010011765321011064467776532013432455338932897403533333
Q gi|254780336|r 294 DIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488)
Q Consensus 294 DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488)
+.|+--||.|-. -|..||+.+|.||.. +-|.|...+ .++.+ +....++||.+|+|||=|=.|.|
T Consensus 155 ~~vVVsPD~G~~~ra~~~a~~Lg~~~~~-~~K~R~~~~------------~v~~~--~~~~dV~Gr~~IIvDDiidTGgT 219 (286)
T PRK00934 155 DPLVLAPDKGALERAKEVAEILGCEYDY-LEKKRISPT------------EVEMK--PKDLDVKGKDVLIVDDIISTGGT 219 (286)
T ss_pred CCEEECCCCCHHHHHHHHHHHHCCCEEE-EEEECCCCC------------CCEEE--CCCCCCCCCEEEEECCHHHCHHH
T ss_conf 8789847974899999999975364658-997438998------------52362--35322258789996562215388
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 8889999985399789999658980588
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
+-...+.|++.||++|++..+-+=...+
T Consensus 220 l~~aa~~Lk~~GA~~V~~~~THglfs~~ 247 (286)
T PRK00934 220 MAKAISILKEQGAKKIYVSCVHPVLVED 247 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHH
T ss_conf 9999999998699869999979007805
No 64
>PRK04117 consensus
Probab=97.98 E-value=1.4e-05 Score=59.67 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=83.2
Q ss_pred CCCCCCCCC-HHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 720120012-0477999999819960010011765321011064467776532013432455338932897403533333
Q gi|254780336|r 294 DIVVPIPDG-GVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488)
Q Consensus 294 DiV~~VPds-g~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488)
+.|+=-||. |..-|..||+.+|.++.- +-|.|. .++. + +...+...++||.+++|||=|-.|.|
T Consensus 162 ~~vvVsPD~Ga~~ra~~~A~~Lg~~~~~-~~K~R~------~~~~------~--~~~~~~gdV~Gk~vIIVDDiI~TGgT 226 (309)
T PRK04117 162 NPIIASPDIGGVARARYFAKKLGLDMVI-VDKRRE------KANE------S--EVMNIIGDVKGKDVILVDDMIDTAGT 226 (309)
T ss_pred CCEEECCCCHHHHHHHHHHHHCCCCEEE-EEECCC------CCCC------C--CCCCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 7469715931999999998742788799-851137------8885------4--32344566489868975725652799
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHH
Q ss_conf 88899999853997899996589805886565005897888546699988999870997788833989998
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYN 443 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ 443 (488)
+-...+.|+++||++|++..+-+=...++.--+.-+.-++++.-+ |+. .. -..+.|.-+|+..|..
T Consensus 227 i~~aa~~L~~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTn--Tip-~~--~~~~kl~~isVa~llA 292 (309)
T PRK04117 227 IVKAAEALKEKGATSVMACCTHAVLSGPAYERIAKGALDELVVTN--TIP-LK--EELPKIKVLSVAPLFA 292 (309)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECC--CCC-CC--CCCCCEEEEEHHHHHH
T ss_conf 999999998669974899994554583699999838997899828--987-74--4599809988399999
No 65
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=97.96 E-value=4.9e-05 Score=55.74 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHH-HHHHHHHCCCCCHH
Q ss_conf 99999999998748-65677201200120477999999819960010011765321011064467-77653201343245
Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHI-RAFGVKLKHSANRT 353 (488)
Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~-R~~~v~~K~~~~~~ 353 (488)
++-..+...|++.. ..+.|.|+++.-.|.+.|...|.++|+|+...=-+++--|.|+...-+.+ -...+.+. ...
T Consensus 33 ~~~~~~~~~l~~~~~~~~vD~IvgiEarGfi~a~alA~~l~~p~v~iRK~gKLPg~~~s~~y~lEYG~~~lei~---~~~ 109 (174)
T PRK02304 33 EALREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPGETISESYELEYGTDTLEIH---KDA 109 (174)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEE---ECC
T ss_conf 99999999999984348998999986555210158899829987999728989985645126736762169998---235
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 533893289740353333388899999853997899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
.-+|+||++|||=+-.|-|+...+++++++||+-+.+..
T Consensus 110 i~~g~~VlivDDvlaTGGT~~a~~~Lv~~~ga~v~~~~~ 148 (174)
T PRK02304 110 IKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAF 148 (174)
T ss_pred CCCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 589999999971543071799999999987998999999
No 66
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.95 E-value=1.7e-05 Score=58.96 Aligned_cols=145 Identities=19% Similarity=0.166 Sum_probs=88.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 99999987486567720120012047-79999998199600100117653210110644677765320134324553389
Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGK 358 (488)
Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk 358 (488)
.+...+.++ .. .+.|+--||.|-. -|..||+.+|.|+.- +-|.|.. ++. +.. .+ +-..++||
T Consensus 147 ~l~~~i~~~-~~-~~~vvVsPD~G~~~ra~~~A~~lg~~~~~-~~K~R~~------~~~------~~~-~~-~iGdV~Gk 209 (309)
T PRK01259 147 ILLEDIKKK-NL-ENLVVVSPDVGGVVRARALAKRLDTDLAI-IDKRRPR------ANV------SEV-MN-IIGDVEGR 209 (309)
T ss_pred HHHHHHHHC-CC-CCCEEEECCCCHHHHHHHHHHHHCCCEEE-EEEECCC------CCC------CCC-CC-CCCCCCCC
T ss_conf 999999863-88-87389914986899999999972998799-9986068------883------333-44-46775664
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECH
Q ss_conf 32897403533333888999998539978999965898058865650058978885466999889998709977888339
Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSV 438 (488)
Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~ 438 (488)
.+|+|||=|=.|.|+-...+.|+++||++|++..+-+=..-++.--+.-+.-++++.-| |+.--.+....+.|.-+|+
T Consensus 210 ~vIIvDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~Tn--Tip~~~~~~~~~kl~vlsv 287 (309)
T PRK01259 210 DCILVDDMIDTGGTLCKAAEALKERGAKSVFAYATHPVLSGGAAERIANSVLDELVVTD--SIPLSEEIKKCPKIRQLSL 287 (309)
T ss_pred EEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEECHHCCHHHHHHHHHCCCCEEEEEC--CCCCCHHHCCCCCCEEEEC
T ss_conf 39997653434565999999997569966999987631394599998708998899818--9668622245898189981
Q ss_pred HHHHH
Q ss_conf 89998
Q gi|254780336|r 439 DGLYN 443 (488)
Q Consensus 439 e~l~~ 443 (488)
..|..
T Consensus 288 a~llA 292 (309)
T PRK01259 288 APLLA 292 (309)
T ss_pred HHHHH
T ss_conf 89999
No 67
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=97.95 E-value=0.0002 Score=51.45 Aligned_cols=131 Identities=14% Similarity=0.252 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCC-----CCCC-CCCCCCCHHHHHHHHHHHC---CCCEEHHEEC-CCCCCCEEEECCHHHH
Q ss_conf 728999999999999874865-----6772-0120012047799999981---9960010011-7653210110644677
Q gi|254780336|r 271 GRSIYVSRRNMGKNLAKESPV-----IADI-VVPIPDGGVPAAIGYAKES---GIPFEQGIIR-NHYVGRTFIEPSHHIR 340 (488)
Q Consensus 271 g~~Vy~~R~~lG~~La~~~~~-----~~Di-V~~VPdsg~~aA~gya~~~---gip~~~~lvk-n~y~gRtFI~p~~~~R 340 (488)
...+..-=++||+++++...- +.++ |++|-.-|.+.+--..+++ ++|.+--|++ ..| |.. ++...
T Consensus 30 eeeI~~rV~elg~qIs~dY~~~~l~~~~pL~vigVLkGs~~F~aDL~R~i~~~~ip~~iDFm~vSSY-g~g----t~SsG 104 (211)
T PTZ00271 30 QEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSY-GTG----VETSG 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEC-CCC----CEECC
T ss_conf 9999999999999999987035546789769999845709999999997123699838899996206-999----71075
Q ss_pred HHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-----C-CCCCCCCCCEECCC
Q ss_conf 765320134324553389328974035333338889999985399789999658-----9-80588656500589
Q gi|254780336|r 341 AFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS-----P-MVLYPDFYGIDIPD 409 (488)
Q Consensus 341 ~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s-----P-pi~~pc~yGid~p~ 409 (488)
.|++... +..-|+||.|++|||=|=.|.|++.+++.|+..||+.|.++.-- - .=..+.|.|.++|.
T Consensus 105 --~v~i~~d-l~~~i~gk~VLIVEDIvDTG~TL~~l~~~l~~~~p~Svki~tLl~K~~~r~~~~~~DyvGf~Ipd 176 (211)
T PTZ00271 105 --QVRMLLD-VRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVEVLVDYPVITIPH 176 (211)
T ss_pred --EEEEEEC-CCCCCCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCC
T ss_conf --2899445-88776898799994132125589999999985499838999978472104589998879997199
No 68
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=97.92 E-value=7e-05 Score=54.63 Aligned_cols=126 Identities=26% Similarity=0.374 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHC
Q ss_conf 99999999987486567720120012047799999981996001001176532101106446777653201343245533
Q gi|254780336|r 277 SRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILA 356 (488)
Q Consensus 277 ~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~ 356 (488)
...+++..+++ ..+.|.|+|+|=.|+|-|...|..+++|+. ++|.. - ... +- .++ +...++
T Consensus 43 ~~~~i~~~l~~--~~~~d~I~G~a~ggipla~~va~~~~~p~~--~vRke------~--K~~----G~-~~~--ieG~~~ 103 (170)
T PRK13811 43 ILKEIAAEVAK--SYDFDAVAGVAVGGVPLAVAVSLASDKPYA--IIRKE------Q--KDH----GK-ASL--IIGDVA 103 (170)
T ss_pred HHHHHHHHHHC--CCCCCEEECCCHHHHHHHHHHHHHCCCCEE--EEEEC------C--CCC----CC-CCC--CCCCCC
T ss_conf 99999999853--779889971410079999999998399879--99974------5--541----34-552--012348
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 89328974035333338889999985399789999658980588656500589788854669998899987099778883
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFL 436 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yl 436 (488)
|+||++|||=|-.|.+++..+..|+++|++=+.+.+- + +|+| .-+|.-+..|..-..-.
T Consensus 104 G~~VlvVEDViTTG~S~~e~i~~l~~~G~~V~~v~~i-----------v---DR~e-------g~~e~l~~~Gv~~~sl~ 162 (170)
T PRK13811 104 GKRVLLVEDVTTSGGSALYGIEQLRSAGAVVDDVVTV-----------V---DREE-------GAEELLAELDITLTPLV 162 (170)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------E---ECCC-------CHHHHHHHCCCEEEEEE
T ss_conf 9989999964457811899999999889979999999-----------9---7774-------77999996699099953
Q ss_pred CHHHHH
Q ss_conf 398999
Q gi|254780336|r 437 SVDGLY 442 (488)
Q Consensus 437 s~e~l~ 442 (488)
++.+|.
T Consensus 163 t~~dll 168 (170)
T PRK13811 163 RVSELL 168 (170)
T ss_pred EHHHHH
T ss_conf 289942
No 69
>PRK02270 consensus
Probab=97.91 E-value=1.5e-05 Score=59.51 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=89.1
Q ss_pred CCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH
Q ss_conf 7720120012047-799999981996001001176532101106446777653201343245533893289740353333
Q gi|254780336|r 293 ADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 (488)
Q Consensus 293 ~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt 371 (488)
.|.|+-.||.|-. -|..||+.+|.++.-+++..+..+ +++. ....+-..++||.+|+|||=|=.|.
T Consensus 162 ~~~vvVsPD~G~~~ra~~~a~~Lg~~~~~a~~~K~R~~-----~~~~--------e~~~~iGdV~Gk~~IIVDDiIdTGg 228 (327)
T PRK02270 162 EKFTVVSPDHGGAVRARILAEIISDQIKIAIIDKRRTG-----ANKS--------EVLGLIGDVDGKNAVIIDDIIDTGG 228 (327)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC-----CCCC--------EEECCCCCEEEEEEEEECCCCCCHH
T ss_conf 87189976974899999999985389748885024678-----7742--------3520456312014899767000547
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHH
Q ss_conf 3888999998539978999965898058865650058978885466999889998709977888339899986
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNA 444 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~a 444 (488)
|+-...+.|+++||++|++..+-|=.-.+..-=++-+.-++++.-+.-...|. .-..+.|.-+|+..|..-
T Consensus 229 Tl~~aa~~Lk~~GA~~V~~~aTHgvfs~~a~~~~~~s~i~~ivvTnTip~~~~--~~~~~kl~vlsva~llae 299 (327)
T PRK02270 229 TIINAAEVLKEKGAKKIVLAATHGLFSKGFEIFEENPNIDKVIITNSIDNKEL--AKKFKKLLIVSLAEFLSK 299 (327)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECHHCCCHHHHHHHCCCCCEEEEECCCCCCHH--HHCCCCEEEEEHHHHHHH
T ss_conf 79999999998799879999977443804999965899878999388668433--502898299887999999
No 70
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=97.91 E-value=0.00013 Score=52.74 Aligned_cols=101 Identities=22% Similarity=0.371 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH
Q ss_conf 99999999998748-65677201200120477999999819960010011765321011064467776532013432455
Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 (488)
Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~ 354 (488)
+....+++.+++.. +.+.|.|+|+|-.|+|.|...|..+++|+ .++|.... +.+.+..+ .-..
T Consensus 56 ~~~~~i~~~~~~~i~~~~~d~I~G~a~Ggipla~~va~~~~~p~--~~vRke~K------------~~G~~~~i--eG~~ 119 (187)
T PRK13810 56 KTLKLIARQAALRIKEMDVDTIAGVELGGVPLATAVSLETGLPL--LIVRKSVK------------DYGTKSRF--VGDL 119 (187)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCE--EEEEECCC------------CCCCCCEE--EEEC
T ss_conf 99999999999844114987794311012799999999819986--99983377------------64434358--8504
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 33893289740353333388899999853997899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
-+|++|++|||=|-.|.++...++.|+++|+.=+.+.+
T Consensus 120 ~~g~rVlvVEDViTTGgS~~eai~~l~~~G~~V~~v~~ 157 (187)
T PRK13810 120 KPEDRIVMLEDVTTSGGSVRDAIEVVREAGAIVKYVIT 157 (187)
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 79988999985435682399999999988997999999
No 71
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.91 E-value=6.8e-05 Score=54.73 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=89.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCC-CCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 99999987486567720120012047-7999999819-960010011765321011064467776532013432455338
Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESG-IPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAG 357 (488)
Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~g-ip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~g 357 (488)
-+.+.+.++.+. .++|+=-||.|-. -|..||+.+| .|+.- +-|.|...+ + .......+-..++|
T Consensus 136 ~l~~~i~~~~~~-~~~vvvsPD~Ga~~ra~~~a~~Lg~~~~~~-~~K~R~~~~----~--------~~v~~~~~~gdV~G 201 (304)
T PRK03092 136 LLADYIRSNYDL-DNMTVVSPDAGRVRVAEKWADRLGGAPLAF-IHKTRDPTV----P--------NQVVANRVVGDVEG 201 (304)
T ss_pred HHHHHHHHCCCC-CCCEEECCCCCHHHHHHHHHHHHCCCCEEE-EECCCCCCC----C--------CEEECCCCCCCCCC
T ss_conf 999999851887-661898069746899999999867997899-970246787----7--------53761444567678
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 93289740353333388899999853997899996589805886565005897888546699988999870997788833
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLS 437 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls 437 (488)
|.+++|||=|=.|.|+-...+.|+++||++|++..+-+-...++.--+.=+.-++++.-| |.. ..+......|..+|
T Consensus 202 r~viIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~Tn--Tip-~~~~~~~~ki~~~s 278 (304)
T PRK03092 202 RTCVLVDDMIDTGGTIAGAVEALKEAGAKDVIIAATHGVLSDPAAERLKNCGAREVVVTN--TLP-IPEEKRFDKLTVLS 278 (304)
T ss_pred CEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEC--CCC-CCCCCCCCCEEEEE
T ss_conf 759997764543735999999998669983999997934596799999738998799818--803-86200689829998
Q ss_pred HHHHHHH
Q ss_conf 9899986
Q gi|254780336|r 438 VDGLYNA 444 (488)
Q Consensus 438 ~e~l~~a 444 (488)
+..|...
T Consensus 279 va~llAe 285 (304)
T PRK03092 279 IAPLLAR 285 (304)
T ss_pred HHHHHHH
T ss_conf 1999999
No 72
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.90 E-value=5.9e-05 Score=55.17 Aligned_cols=98 Identities=21% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH
Q ss_conf 7720120012047-799999981996001001176532101106446777653201343245533893289740353333
Q gi|254780336|r 293 ADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 (488)
Q Consensus 293 ~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt 371 (488)
.++|+=.||.|-. -|..||+.+|.|+.. +-|.|. ++-+... +...+... .+-..|+||.+++|||=|=.|.
T Consensus 208 ~~~vVVSPD~Ggv~RA~~~A~~L~~~lai-i~KrR~--~s~v~~~---~n~i~~~~--~lggdV~GK~~IIvDDmIdTgg 279 (381)
T PRK06827 208 ENLVVISPDTGAMDRAKYYSSVLKVPLGL-FYKRRD--YSTVVNG---KNPIVVHE--LLGRDVEGKDVFIVDDMIASGG 279 (381)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCEEE-EEEECC--CCCCCCC---CCCEEEEE--EECCCCCCCEEEEECCCCCCCH
T ss_conf 77779926997389999999971989899-997646--7644566---78436752--4135567988999724314526
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 388899999853997899996589805
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
|+-...+.|++.||++|++..+-|=..
T Consensus 280 Tl~~aA~~Lk~~GA~~V~a~aTHgvfS 306 (381)
T PRK06827 280 SVLDAAKELKSRGAKKIICAVSFPFFT 306 (381)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECHHCC
T ss_conf 899999999987998899999736604
No 73
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.90 E-value=9.6e-05 Score=53.67 Aligned_cols=137 Identities=20% Similarity=0.344 Sum_probs=102.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHH
Q ss_conf 430003728999999999999874865677201200120477999999819960010011-7653210110644677765
Q gi|254780336|r 265 PDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFG 343 (488)
Q Consensus 265 pdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~ 343 (488)
++-.++...+...=++||++.+++..-+--+|++|-..+.+.+--..+++.+|.+--++- .+|-+-|.= +...
T Consensus 8 ~evLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~~~i~~~~e~dFm~vSSYg~~t~s--sg~v---- 81 (178)
T COG0634 8 KEVLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSS--SGEV---- 81 (178)
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC--CCCE----
T ss_conf 5074289999999999999997762799619999746645309999985599841678997404787634--7716----
Q ss_pred HHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC------CCCCCCCEECCC
Q ss_conf 320134324553389328974035333338889999985399789999658980------588656500589
Q gi|254780336|r 344 VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV------LYPDFYGIDIPD 409 (488)
Q Consensus 344 v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi------~~pc~yGid~p~ 409 (488)
+..-++.+-++||.|++|||=|=.|.|++.+..+|+..||+++++++-.-.- +.+.|.|-+.|.
T Consensus 82 --~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r~~~i~~DyvGf~vPd 151 (178)
T COG0634 82 --KILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERRKVDIEADYVGFEVPD 151 (178)
T ss_pred --EEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCC
T ss_conf --8853566677898499985210367559999999975699768999986076555678776667650688
No 74
>PRK02039 consensus
Probab=97.89 E-value=4.3e-05 Score=56.18 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=87.3
Q ss_pred CCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 720120012047-7999999819960010011765321011064467776532013432455338932897403533333
Q gi|254780336|r 294 DIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488)
Q Consensus 294 DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488)
|.|+=-||.|-. -|..||+.+|.||.- +-|.|.-+++ +. .. .+-..++||.+|+|||=|=.|.|
T Consensus 165 ~~vvVsPD~G~~~ra~~~a~~L~~~~~~-~~K~R~~~~~------------~e-~~-~~igdV~Gk~~IIVDDiIdTGgT 229 (316)
T PRK02039 165 DLLVVSPDVGGVVRARALAKQLNCDLAI-IDKRRPKANV------------AE-VM-NIIGEVEGRTCVIMDDMVDTAGT 229 (316)
T ss_pred CCEEECCCCHHHHHHHHHHHHHCCCEEE-EEECCCCCCC------------EE-EE-CCCCCCCCCEEEEECCHHHCHHH
T ss_conf 7389846940889999999982999799-9841588870------------36-30-24665389726711725545688
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHH
Q ss_conf 88899999853997899996589805886565005897888546699988999870997788833989998
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYN 443 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ 443 (488)
+-...+.|+++||++|++..+-+=...+..-=+.-+.-++++.-| |+.--.+...++.|.-+|+..|..
T Consensus 230 l~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~rl~~s~i~~vvvTn--Tip~~~~~~~~~ki~vlsva~llA 298 (316)
T PRK02039 230 LCKAAQVLKERGAKQVFAYATHPVLSGGAAERIAASALDELVVTD--TIPLSAESLACPKIRQLSSAGLLA 298 (316)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEEC--CCCCCHHHCCCCCEEEEEHHHHHH
T ss_conf 999999999769985799997842573499998608997899938--988863444589809998799999
No 75
>PRK01506 consensus
Probab=97.88 E-value=2e-05 Score=58.46 Aligned_cols=143 Identities=24% Similarity=0.230 Sum_probs=90.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCC
Q ss_conf 9999987486567720120012047-799999981996001001176532101106446777653201343245533893
Q gi|254780336|r 281 MGKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359 (488)
Q Consensus 281 lG~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~ 359 (488)
+...+.++ .+ .+.|+--||.|-. -|..||+.+|.|+.- +-|.|.. ++. +.. .++-..++||.
T Consensus 157 l~~~~~~~-~~-~~~vVVsPD~Ga~kra~~~a~~L~~~~~~-~~K~R~~------~~~------v~~--~~~~gdV~Gr~ 219 (317)
T PRK01506 157 LSDYFETK-GL-KDIVIVSPDHGGVTRARKMADRLKAPIAI-IDKRRPR------PNV------AEV--MNIIGNIEGKT 219 (317)
T ss_pred HHHHHHHC-CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEE-EEEECCC------CCE------EEE--ECCCCCCCCCE
T ss_conf 88899854-88-77489904924899999999972996688-9864179------980------463--02456557962
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHH
Q ss_conf 28974035333338889999985399789999658980588656500589788854669998899987099778883398
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVD 439 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e 439 (488)
+|+|||=|=.|.|+-...+.|+++||++|++..+-|-..-+..--|.-+.-++++.-| |+. ..+.-.++.|.-+|+.
T Consensus 220 vIIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~Tn--Tip-~p~~~~~~kl~vlsva 296 (317)
T PRK01506 220 AILIDDIIDTAGTITLAANALVENGASEVYACCTHPVLSGPAIERIQNSKIKELVVTN--SIV-LPEEKKIDKVHELSVA 296 (317)
T ss_pred EEEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEEC--CCC-CCHHHCCCCCEEEEHH
T ss_conf 7875132213505999999998659975899997700681799998618998899938--844-8612337983998849
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780336|r 440 GLYN 443 (488)
Q Consensus 440 ~l~~ 443 (488)
.|..
T Consensus 297 ~llA 300 (317)
T PRK01506 297 PLIA 300 (317)
T ss_pred HHHH
T ss_conf 9999
No 76
>PRK01132 consensus
Probab=97.86 E-value=7e-05 Score=54.63 Aligned_cols=93 Identities=28% Similarity=0.317 Sum_probs=67.2
Q ss_pred CCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHH
Q ss_conf 67720120012047-79999998199600100117653210110644677765320134324553389328974035333
Q gi|254780336|r 292 IADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRG 370 (488)
Q Consensus 292 ~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRG 370 (488)
+.++|+ .||.|-. -|..||+.+|.+|. .+.|-|.-+++ +..+ +..-.++||.+|+|||-|=.|
T Consensus 153 ~~~vVV-sPD~G~~~rA~~~A~~Lg~~~~-~~~K~R~~~~~------------v~~~--~~~~dV~gk~~IIVDDiidTG 216 (286)
T PRK01132 153 DIDYVV-SPDDGGLERVKSIAKYLGKKAF-YIEKKRIDDRT------------VEMK--MPDIDSNGKKILIVDDIISTG 216 (286)
T ss_pred CCCEEE-CCCCCHHHHHHHHHHHCCCCEE-EEEEEECCCCC------------CEEE--CCCCCEEEEEEEEEECHHHCH
T ss_conf 856125-7985288999999998199869-99755569985------------1351--211214641599981502123
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 338889999985399789999658980588
Q gi|254780336|r 371 TTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 371 tT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
.|+-...+.|++.||++|++..+-+=...+
T Consensus 217 gTl~~aa~~Lk~~GA~~V~a~~THglfs~~ 246 (286)
T PRK01132 217 GTIAKSSRILRDKGASKIYVSAVHGLFVNN 246 (286)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHH
T ss_conf 899999999998799849999968206716
No 77
>PRK01999 consensus
Probab=97.86 E-value=4.7e-05 Score=55.86 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=86.8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCC
Q ss_conf 9999987486567720120012047-799999981996001001176532101106446777653201343245533893
Q gi|254780336|r 281 MGKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359 (488)
Q Consensus 281 lG~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~ 359 (488)
+.+.+.+ .+.+ +.|+--||.|-. -|..||+.+|.||.- +-|.|... +. +. -.++-..++||.
T Consensus 152 ~~~~~~~-~~~~-~~vvVsPD~g~~kra~~~A~~Lg~~~~~-~~K~R~~~------~~------v~--~~~~~gdV~Gk~ 214 (311)
T PRK01999 152 FLPYIRS-LKLD-NLVIATPDVGGSKRASAYSKYLGVPVVI-CYKSREKA------NE------IA--SMQIIGDVKGKN 214 (311)
T ss_pred HHHHHHH-CCCC-CEEEECCCHHHHHHHHHHHHHHCCCEEE-EECCCCCC------CC------CE--ECCCCCCCCCCE
T ss_conf 9999996-3987-6089815904999999999861787233-11024678------84------11--313343547966
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHH
Q ss_conf 28974035333338889999985399789999658980588656500589788854669998899987099778883398
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVD 439 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e 439 (488)
+++|||=|=.|.|+-..++.|+++||++|++..+-|-..-+..--+.-+.-++++.-+ |+. .. -.++.|..+|+.
T Consensus 215 ~IIVDDiIdTGgTl~~aa~~L~~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~Td--Tip-~~--~~~~k~~visva 289 (311)
T PRK01999 215 VILVDDMVDTAGTITKAADLMMEKGAKSVRAIASHAVMSGPASERVENSKLTEMIFTD--SIP-YR--KKCSKVKVLSVA 289 (311)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECC--CCC-CC--CCCCCCEEEEHH
T ss_conf 9997544443478999999998559973899994554585599999748998899837--855-85--569984898768
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780336|r 440 GLYN 443 (488)
Q Consensus 440 ~l~~ 443 (488)
.|..
T Consensus 290 ~llA 293 (311)
T PRK01999 290 DLFA 293 (311)
T ss_pred HHHH
T ss_conf 9999
No 78
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.86 E-value=7.2e-05 Score=54.54 Aligned_cols=132 Identities=18% Similarity=0.166 Sum_probs=89.5
Q ss_pred CCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 720120012047-7999999819960010011765321011064467776532013432455338932897403533333
Q gi|254780336|r 294 DIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488)
Q Consensus 294 DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488)
+.|+=-||.|-. -|..||+.+|.|+.- +-|.|.. ++..+ ..+ +-..++||.+++|||=|=.|.|
T Consensus 177 ~~vVVsPD~G~~krA~~~A~~L~~~~a~-~~K~R~~------~~~~e-------~~~-~iGdV~Gk~vIIVDDiIdTGgT 241 (340)
T PRK00553 177 DLVVVSPDYGGVKRARLIAESLELPLAI-IDKRRPK------HNVAE-------SIN-VLGEVKNKNCLIVDDMIDTGGT 241 (340)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCCEEE-EECCCCC------CCCCC-------CCC-CCCCCCCCEEEEECCHHHHHHH
T ss_conf 6489889963899999999982996799-8534578------98641-------134-4555468548952524431256
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEC----CCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHH
Q ss_conf 88899999853997899996589805886565005----897888546699988999870997788833989998
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDI----PDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYN 443 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~----p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ 443 (488)
+-...+.|+++||++|+...+-|-+..++.-=++= +.-++++--| |+. ..+....+.|.-+|+..|..
T Consensus 242 l~~aa~~Lk~~GA~~V~a~aTHgvfsg~A~eri~~~~~~~~i~~vvvTn--Tip-~~~~~~~~kl~vlsva~lla 313 (340)
T PRK00553 242 VIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSN--SIP-QTKFEKKPQFKVVDLAHLYE 313 (340)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECC--CCC-CHHHHCCCCCEEEEHHHHHH
T ss_conf 9999999998799879999979514857999998520257765899857--887-72565599829987799999
No 79
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=97.86 E-value=8.7e-05 Score=53.98 Aligned_cols=130 Identities=21% Similarity=0.339 Sum_probs=86.6
Q ss_pred HHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 9999999874-865677201200120477999999819960010011765321011064467776532013432455338
Q gi|254780336|r 279 RNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAG 357 (488)
Q Consensus 279 ~~lG~~La~~-~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~g 357 (488)
.+++..+|+. ...+.|+++|||=+|+|.|-+.|-++++|+.. .| - +..+.+-+ |+ ..-...+|
T Consensus 330 ~~v~~~ya~~~~~~~fD~i~GvpY~glP~AT~lSl~~~~Pm~~--~R------K------E~K~hGt~-~~-IeG~~~~G 393 (478)
T PRK05500 330 HQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIF--PR------K------EVKAHGTR-RL-IEGNFHPG 393 (478)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEE--EE------C------CCCCCCCC-CC-EEEECCCC
T ss_conf 9999999998608997679666654099999999982897699--61------6------43566888-72-56533899
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 93289740353333388899999853997899996589805886565005897888546699988999870997788833
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLS 437 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls 437 (488)
++|++|||=|-.|+..+..++.||++|++=.++.+. +| |+| -..|--+.-|..--.-++
T Consensus 394 ~~vlIIdDViTsG~Si~e~i~~L~~~G~~V~~~vV~-----------lD---Ree-------g~~~~L~~~Gi~l~sv~t 452 (478)
T PRK05500 394 ETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVF-----------ID---HEQ-------GVKDKLQSHGYQAYSVLT 452 (478)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEE-----------EE---CCC-------CHHHHHHHCCCEEEEEEE
T ss_conf 889999601267787999999999879938779999-----------93---542-------368899867936999730
Q ss_pred HHHHHHHH
Q ss_conf 98999861
Q gi|254780336|r 438 VDGLYNAI 445 (488)
Q Consensus 438 ~e~l~~ai 445 (488)
+..+.+.+
T Consensus 453 l~ei~~~L 460 (478)
T PRK05500 453 ISEITETL 460 (478)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 80
>PRK05259 consensus
Probab=97.85 E-value=4.3e-05 Score=56.13 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=88.5
Q ss_pred CCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH
Q ss_conf 7720120012047-799999981996001001176532101106446777653201343245533893289740353333
Q gi|254780336|r 293 ADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 (488)
Q Consensus 293 ~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt 371 (488)
.++|+=-||.|-. -|..||+.+|.||.- +-|.|. .++. . +...+...++||.+|+|||=|=.|.
T Consensus 159 ~~~vvVsPD~G~~~ra~~~a~~l~~~~~~-~~K~R~------~~~~--~------~~~~~~gdV~Gk~~IIvDDiIdTGg 223 (310)
T PRK05259 159 GNVMVVSPDVGGVVRARALAKRLDAPLAI-VDKRRE------RPGE--S------EVMNVIGDVSGRDCILIDDIVDSGG 223 (310)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCEEE-EEEEEC------CCCC--C------CCCCCCCCCCCCEEEEECCHHHCHH
T ss_conf 66399914926999999999981996789-998606------8995--4------3345456623124895173441688
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHH
Q ss_conf 3888999998539978999965898058865650058978885466999889998709977888339899986
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNA 444 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~a 444 (488)
|+-..++.|+++||++|++..+-|-...++.-=|.-+.-++++.-+ |+.-....-..+.|.-+|+..|..-
T Consensus 224 Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~ri~~s~i~~vvvTd--Ti~~~~~~~~~~kl~vlsva~llAe 294 (310)
T PRK05259 224 TLCNAAEALLANGANSVTAYITHGVLSGGAVARIASSKLKELVITD--SIQPTEAVNDAPNIRVLSIAPLIGE 294 (310)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEEC--CCCCCHHHHCCCCCEEEEHHHHHHH
T ss_conf 9999999998779986999997853685699998628997899938--9788845705899399982999999
No 81
>PRK04554 consensus
Probab=97.84 E-value=4.5e-05 Score=55.98 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=93.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCC
Q ss_conf 9999987486567720120012047-799999981996001001176532101106446777653201343245533893
Q gi|254780336|r 281 MGKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359 (488)
Q Consensus 281 lG~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~ 359 (488)
+.+.+.++ .++ +.|+=-||.|-. -|..||+.+|.||.- +-|.|...++-. ...+-..++||.
T Consensus 155 l~~~i~~~-~~~-~~vvVsPD~G~~~ra~~~A~~L~~~~a~-~~K~R~~~~~~~--------------~~~~vgdV~Gk~ 217 (327)
T PRK04554 155 LLNDIKQQ-RIE-NLTVVSPDIGGVVRARAVAKSLNADLAI-IDKRRPKANVAE--------------VMNIIGDIQGRT 217 (327)
T ss_pred HHHHHHHC-CCC-CCEEECCCCCHHHHHHHHHHHCCCCEEE-EEEECCCCCCEE--------------EECCCCCCCCCE
T ss_conf 99999860-778-7289837953899999999756887799-996448998226--------------512556412223
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHH
Q ss_conf 28974035333338889999985399789999658980588656500589788854669998899987099778883398
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVD 439 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e 439 (488)
+++|||=|=.|-|+-..++.|+++||++|++..+-+-..-++.-=+.-+.-++++.-| |+.--...-..+.|.-+|+.
T Consensus 218 ~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHglfs~~A~~rl~~s~i~~ivvTn--TIp~~~~~~~~~Ki~vlsva 295 (327)
T PRK04554 218 CLIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTD--TIPLSEAAKNCDRIRQVTIA 295 (327)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEEC--CCCCCHHHCCCCCEEEEEHH
T ss_conf 6720432135067999999999769987899987916063399999718997899918--97687456258980998889
Q ss_pred HHHHH
Q ss_conf 99986
Q gi|254780336|r 440 GLYNA 444 (488)
Q Consensus 440 ~l~~a 444 (488)
.|...
T Consensus 296 ~llAe 300 (327)
T PRK04554 296 GLLAE 300 (327)
T ss_pred HHHHH
T ss_conf 99999
No 82
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.81 E-value=6.1e-05 Score=55.09 Aligned_cols=143 Identities=19% Similarity=0.155 Sum_probs=89.2
Q ss_pred HHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHHCC-CCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCE
Q ss_conf 999874865677201200120-477999999819-960010011765321011064467776532013432455338932
Q gi|254780336|r 283 KNLAKESPVIADIVVPIPDGG-VPAAIGYAKESG-IPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360 (488)
Q Consensus 283 ~~La~~~~~~~DiV~~VPdsg-~~aA~gya~~~g-ip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~v 360 (488)
..+++.... .++|+=-||.| ..-|..||+.+| .++. .+-|.|.. +++ + +..++...++||.+
T Consensus 157 ~~~~~~~~~-~~~vvVsPD~G~~~ra~~~A~~Lg~~~~~-~~~K~R~~------~~~------~--~~~~~~gdV~Gk~~ 220 (319)
T PRK04923 157 ADIWRAYGT-DNLIVVSPDVGGVVRARAVAKRLDDADLA-IIDKRRPR------ANV------A--TVMNIIGDVQGKTC 220 (319)
T ss_pred HHHHHHCCC-CCCEEECCCCCHHHHHHHHHHHCCCCCEE-EEEEECCC------CCC------C--EECCCCCCCCCCEE
T ss_conf 999984598-77189847942889999999870898679-99854489------982------1--10244444379669
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHH
Q ss_conf 89740353333388899999853997899996589805886565005897888546699988999870997788833989
Q gi|254780336|r 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDG 440 (488)
Q Consensus 361 vlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~ 440 (488)
|+|||-|=.|.|+-...+.|+++||++|++..+-+-...++.--+.-+.-++++.-| |+.-=...-.+..|.-+|+..
T Consensus 221 IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTn--Tip~~~~~~~~~kl~vlsva~ 298 (319)
T PRK04923 221 VLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDELVVTD--TIPLSEAARTCAKIRQLSVAE 298 (319)
T ss_pred EEECCHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEC--CCCCCHHHCCCCCCEEEEHHH
T ss_conf 996643206512999999998759986899997976886799999708998899828--965862233589838997389
Q ss_pred HHH
Q ss_conf 998
Q gi|254780336|r 441 LYN 443 (488)
Q Consensus 441 l~~ 443 (488)
|..
T Consensus 299 llA 301 (319)
T PRK04923 299 LLA 301 (319)
T ss_pred HHH
T ss_conf 999
No 83
>PRK05038 consensus
Probab=97.81 E-value=6.9e-05 Score=54.70 Aligned_cols=143 Identities=19% Similarity=0.181 Sum_probs=89.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHH-HHHHHHHHHCC-CCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 999998748656772012001204-77999999819-9600100117653210110644677765320134324553389
Q gi|254780336|r 281 MGKNLAKESPVIADIVVPIPDGGV-PAAIGYAKESG-IPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGK 358 (488)
Q Consensus 281 lG~~La~~~~~~~DiV~~VPdsg~-~aA~gya~~~g-ip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk 358 (488)
+.+.+.++ .++-.+|+ -||.|- .-|..||+.+| .+|.- +-|.|.. +++. +..++...++||
T Consensus 152 ~~~~~~~~-~~~~~vVV-sPD~g~~~ra~~~A~~l~~~~~~~-~~K~R~~------~~~~--------~~~~~~gdV~Gk 214 (315)
T PRK05038 152 LLEDMLQK-NLDNPIVV-SPDIGGVVRARAIAKLLNDTDMAI-IDKRRPR------ANVS--------QVMHIIGDVAGR 214 (315)
T ss_pred HHHHHHHH-CCCCCEEE-CCCCHHHHHHHHHHHHHCCCCEEE-EEEECCC------CCCC--------EEECCCCCCCCC
T ss_conf 99999970-88875798-159149999999998708987799-9850378------8731--------440345643441
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCC-CHHHHHHHHCCCEEEEEC
Q ss_conf 3289740353333388899999853997899996589805886565005897888546699-988999870997788833
Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCS-SPQEMCNFIGVDSLGFLS 437 (488)
Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~-~~eei~~~igadsl~yls 437 (488)
.+++|||-|=.|.|+-..++.|++.||++|++..+-+-...++.--+.-+.-++++.-|.- ..++ .-..+.|.-+|
T Consensus 215 ~~iIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~~l~~s~i~~ivvTnTip~~~~---~~~~~kl~vls 291 (315)
T PRK05038 215 DCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFSGNAAENIRNSVIDEVIVTDTIPLSDE---IKALPKVRTLT 291 (315)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHH---HCCCCCEEEEE
T ss_conf 379975722251589999999996599863599865355836999986089988999289778945---63589819998
Q ss_pred HHHHHH
Q ss_conf 989998
Q gi|254780336|r 438 VDGLYN 443 (488)
Q Consensus 438 ~e~l~~ 443 (488)
+..|..
T Consensus 292 va~llA 297 (315)
T PRK05038 292 LSGMLA 297 (315)
T ss_pred HHHHHH
T ss_conf 299999
No 84
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.80 E-value=4.4e-05 Score=56.09 Aligned_cols=133 Identities=22% Similarity=0.235 Sum_probs=86.8
Q ss_pred CCCCCCCCCCHHH-HHHHHHHHC-CCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHH
Q ss_conf 7720120012047-799999981-99600100117653210110644677765320134324553389328974035333
Q gi|254780336|r 293 ADIVVPIPDGGVP-AAIGYAKES-GIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRG 370 (488)
Q Consensus 293 ~DiV~~VPdsg~~-aA~gya~~~-gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRG 370 (488)
.|.|+=-||.|-. -|..||+.+ +.|+.- +-|.|. +. +. ....+ +-..|+||.+|+|||=|-.|
T Consensus 179 ~~~vVVsPD~G~~krA~~~A~~L~~~~~a~-~~K~R~-~~-----~~-------~~~~~-~vGdV~Gr~~IIVDDiIdTG 243 (331)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAI-IDKRRQ-AH-----NV-------AEVLN-VIGDVKGKTAILVDDMIDTG 243 (331)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCCEEE-EECCCC-CC-----CC-------CEECC-CCCCCCCCEEEEECCHHHHH
T ss_conf 871797479408999999999727995899-942457-88-----84-------21024-44554565189962144227
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCH-HHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHH
Q ss_conf 3388899999853997899996589805886565005897-888546699988999870997788833989998
Q gi|254780336|r 371 TTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDP-TALLANKCSSPQEMCNFIGVDSLGFLSVDGLYN 443 (488)
Q Consensus 371 tT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~-~eLia~~~~~~eei~~~igadsl~yls~e~l~~ 443 (488)
.|+-...+.|+++||++|++..+-+-...++.-=+.-+.- ++++.-+ |+. +.+....+.|.-+|+..|..
T Consensus 244 gTl~~aa~~Lk~~GA~~V~a~aTHgvfsg~A~~rl~~s~ii~~vvvTd--Tip-~~~~~~~~ki~vlsvA~llA 314 (331)
T PRK02812 244 GTICEGARLLRKEGAKRVYACATHAVFSPPAIERLSASGLFEEVIVTN--TIP-VPEERRFPQLKVLSVANMLG 314 (331)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEC--CCC-CCHHHCCCCCEEEEHHHHHH
T ss_conf 999999999985799878999989655877999997289767799808--944-85000699819987389999
No 85
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=97.75 E-value=0.00021 Score=51.30 Aligned_cols=100 Identities=22% Similarity=0.365 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHH
Q ss_conf 99999999998748656772012001204779999998199600100117653210110644677765320134324553
Q gi|254780336|r 276 VSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTIL 355 (488)
Q Consensus 276 ~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i 355 (488)
+....++..|+++.+ +.+.+.|+|=.|+|.|...|..+++|+. ++|... ..+- ....+. -..-
T Consensus 43 ~~~~~i~~~~~~~i~-~~~~i~G~~~ggip~a~~ia~~~~~p~~--~vRke~--K~hG------~~~~ie------G~~~ 105 (174)
T PRK13812 43 ECLSAIAAAFADRID-EDTTLAGVALGAVPLVAATATEAGVPYV--IARKQA--KEYG------TGNRIE------GRLD 105 (174)
T ss_pred HHHHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHHHCCCEE--EEEECC--CCCC------CCCCCC------CCCC
T ss_conf 999999999998604-2163867552439999999998299889--998436--7766------443031------3235
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3893289740353333388899999853997899996
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+|++|++|||=|-.|+++...++.|+++|+.=+.+.+
T Consensus 106 ~g~rVlivEDViTTG~S~~eai~~l~~~G~~V~~v~v 142 (174)
T PRK13812 106 DGEEVVVLEDIATTGQSAVDAVEALRDAGATVNRVLV 142 (174)
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 7866999986445780199999999987997999999
No 86
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=97.75 E-value=0.00029 Score=50.20 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=86.6
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 999999874865677201200120-4779999998199600100117653210110644677765320134324553389
Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGG-VPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGK 358 (488)
Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg-~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk 358 (488)
-+.+.+.+.. ..-|.|+=-||.| ..-|..+|+.+|.||.. +-|.|. + .|++ +. ...+-.-++||
T Consensus 151 ~l~~~~~~~~-~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~-i~K~R~---~--~~~~------v~--~~~~~gdV~gk 215 (314)
T COG0462 151 LLAEYIREKY-DLDDPVVVSPDKGGVKRARALADRLGAPLAI-IDKRRD---S--SPNV------VE--VMNLIGDVEGK 215 (314)
T ss_pred HHHHHHHHHC-CCCCCEEECCCCCHHHHHHHHHHHHCCCEEE-EEEEEC---C--CCCE------EE--EECCCCCCCCC
T ss_conf 9999999736-7778689888843799999999980998799-998725---8--9974------79--70343367798
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECH
Q ss_conf 32897403533333888999998539978999965898058865650058978885466999889998709977888339
Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSV 438 (488)
Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~ 438 (488)
.++||||=|=.|.|+-.-.+.|++.|||+|++..+-|-..-++.-=+.-..-+|+|.-+ |+. ..+.--.+.+..+|+
T Consensus 216 ~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~~i~~vivTn--Ti~-~~~~~~~~~~~~isv 292 (314)
T COG0462 216 DVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEASAIDEVIVTD--TIP-LPEKKKIPKVSVISV 292 (314)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHCHHHHHHHHCCCCCEEEEEC--CCC-CCCCCCCCCEEEEEH
T ss_conf 79999365136568999999999779975999998366070899998648876799827--834-653114573579885
Q ss_pred HHHHH
Q ss_conf 89998
Q gi|254780336|r 439 DGLYN 443 (488)
Q Consensus 439 e~l~~ 443 (488)
..|..
T Consensus 293 a~lia 297 (314)
T COG0462 293 APLIA 297 (314)
T ss_pred HHHHH
T ss_conf 89999
No 87
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.71 E-value=0.00031 Score=50.05 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=76.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCC
Q ss_conf 99999874865677201200120-47799999981996001001176532101106446777653201343245533893
Q gi|254780336|r 281 MGKNLAKESPVIADIVVPIPDGG-VPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359 (488)
Q Consensus 281 lG~~La~~~~~~~DiV~~VPdsg-~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~ 359 (488)
+.+.+.+. ++ |.|+=-||.| ..-|..+|+.+|.||.. +-|.|...++ +...+ +.-..++||.
T Consensus 151 l~~~i~~~--~~-~~vvVsPD~G~~~ra~~~a~~lg~~~~~-~~K~R~~~~~------------v~i~~-~~~~~v~gk~ 213 (301)
T PRK07199 151 IAAWIRAH--VP-KPLLIGPDSESEQWVSAVAGRAGAPHAV-LRKTRHGDRD------------VEISL-PDLSAWAGRT 213 (301)
T ss_pred HHHHHHHH--CC-CCEEECCCCCHHHHHHHHHHHCCCCEEE-EEEEECCCCC------------CEEEC-CCCCCCCCCC
T ss_conf 89999851--87-7536788877799999999865998799-9988658986------------33744-6554558995
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHH
Q ss_conf 28974035333338889999985399789999658980588656500589788854
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLA 415 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia 415 (488)
+++|||=|=.|.|+-...+.||+.||++|++..+-+=..-++.--|.=+.-+|++.
T Consensus 214 ~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHgvfs~~A~~~i~~s~i~~ivv 269 (301)
T PRK07199 214 PVLVDDIVSTGRTLIEAARQLLAAGAASPVCVGVHALFAPDAYSALLAAGAARVVS 269 (301)
T ss_pred EEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 47866422143779999999998699858999978647856999998489988998
No 88
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00099 Score=46.43 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHC-C-CCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH
Q ss_conf 99999999998748-6-567720120012047799999981996001001176532101106446777653201343245
Q gi|254780336|r 276 VSRRNMGKNLAKES-P-VIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488)
Q Consensus 276 ~~R~~lG~~La~~~-~-~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488)
+.+...+..+|+.. . .+.|+|+|.+=.|+|.|...|.++. .+.- ++ +-|.+-+...+. +++-...
T Consensus 43 ~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~-~~~~-~~----~~Rke~K~hG~~-------~~ieG~~ 109 (201)
T COG0461 43 ELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALA-HLPP-MA----YVRKEAKDHGTG-------GLIEGGE 109 (201)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHC-CCCC-EE----EEECEECCCCCC-------CEEEECC
T ss_conf 899999999999754167876897523345489999999845-4882-79----982200047876-------5157437
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEE
Q ss_conf 53389328974035333338889999985399789999658980588656500589788854669998899987099778
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl 433 (488)
. +|++|++|||=|-.|+.+..-++.||++|+.=+.+.+. + +|+ ...+|.-+.-|..-.
T Consensus 110 ~-~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~i-----------v---DR~-------~~~~~~~~~~g~~~~ 167 (201)
T COG0461 110 V-KGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVI-----------V---DRQ-------SGAKEVLKEYGVKLV 167 (201)
T ss_pred C-CCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE-----------E---ECC-------HHHHHHHHHCCCCEE
T ss_conf 8-99899999720167876999999999869859899999-----------9---520-------667888986599668
Q ss_pred EEECHHHHHHHHC
Q ss_conf 8833989998611
Q gi|254780336|r 434 GFLSVDGLYNAIC 446 (488)
Q Consensus 434 ~yls~e~l~~ai~ 446 (488)
.-.++.+|.+...
T Consensus 168 sl~tl~dl~~~~~ 180 (201)
T COG0461 168 SLVTLSDLLEVLY 180 (201)
T ss_pred EEEEHHHHHHHHH
T ss_conf 8746999999987
No 89
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=97.41 E-value=0.0017 Score=44.77 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=91.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEEC-CHHHHHH
Q ss_conf 3000372899999999999987486--567720120012047799999981996001001176532101106-4467776
Q gi|254780336|r 266 DSIISGRSIYVSRRNMGKNLAKESP--VIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEP-SHHIRAF 342 (488)
Q Consensus 266 dS~~~g~~Vy~~R~~lG~~La~~~~--~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p-~~~~R~~ 342 (488)
.+.+++...|+.=...=.+.+++.. +++|.|+|.=-=|=..+-..|.++|+||...=-+++=-+-|+=+. +-|-++.
T Consensus 22 TplL~~~~~f~~~id~l~~~~~~~~~~id~d~iVG~EaRGFifG~~LA~~LgvGFVPVRK~GKLP~~t~~~~Y~LEYG~d 101 (175)
T TIGR01090 22 TPLLNNPELFRFLIDLLVERYKDANGEIDADLIVGLEARGFIFGAALAYKLGVGFVPVRKPGKLPGETVSASYDLEYGKD 101 (175)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECEECCCC
T ss_conf 70106877899999999999986079515136876766725778899997089806754787668422667403004730
Q ss_pred HHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 5320134324553389328974035333338889999985399789999
Q gi|254780336|r 343 GVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 343 ~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
.+.+.=++++ +.|+|||+|||=|=.|=|+..++++++++||.=|+.+
T Consensus 102 ~lEIh~DA~~--~~g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~a 148 (175)
T TIGR01090 102 SLEIHKDAIK--IPGQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAA 148 (175)
T ss_pred EEEEEHHHHH--CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 3534111364--0789089983220126789999999998596168745
No 90
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.40 E-value=0.00015 Score=52.26 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=91.7
Q ss_pred CCCCCCCCHH-HHHHHHHHHCCCC----EEHHE-ECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHH
Q ss_conf 2012001204-7799999981996----00100-1176532101106446777653201343245533893289740353
Q gi|254780336|r 295 IVVPIPDGGV-PAAIGYAKESGIP----FEQGI-IRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIV 368 (488)
Q Consensus 295 iV~~VPdsg~-~aA~gya~~~gip----~~~~l-vkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIV 368 (488)
.|+=.||.|- .-|..||+.++.+ ...++ .|.|. .|++ + ...+ +-..|+||.+|+|||=|=
T Consensus 285 ~VVVSPD~GgvkRAr~~A~~L~~~~i~d~~lAii~KrR~------~~ne------v-e~m~-iIGDVkGK~~IIVDDmID 350 (443)
T PTZ00145 285 PVIVSPDAGGVYRARKFQDGLNHRGIGDCGIAMLIKQRT------KPNE------I-EKMD-LVGNVYDSDVIIVDDMID 350 (443)
T ss_pred CEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECC------CCCC------E-EEEE-EEECCCCCEEEEECCCCC
T ss_conf 889838997499999999985545567886599996559------9993------6-6535-575027987899677434
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHH-HCCCEEEEECHHHHH-HHH
Q ss_conf 33338889999985399789999658980588656500589788854669998899987-099778883398999-861
Q gi|254780336|r 369 RGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNF-IGVDSLGFLSVDGLY-NAI 445 (488)
Q Consensus 369 RGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~-igadsl~yls~e~l~-~ai 445 (488)
.|.|+-...+.|++.||++|+...+-|-..-|+.--|.-+.-+|++.-+ |+. +.+. -.++-+.-||+..|. +||
T Consensus 351 TgGTL~~AA~~Lke~GAk~VyA~aTHGVfSg~AierI~~S~I~evVVTD--TIp-~~~~~~~~~KI~vLSVA~LlAEAI 426 (443)
T PTZ00145 351 TSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIDRIEKSPLEEVVVTD--TVK-SNKNIDSCKKITKLSVSVLVADAI 426 (443)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEECC--CCC-CCCCCCCCCCCEEEEHHHHHHHHH
T ss_conf 5567999999999679987999997730785489897548997899878--857-831002389957987689999999
No 91
>PRK09213 purine operon repressor; Provisional
Probab=97.39 E-value=0.00085 Score=46.93 Aligned_cols=109 Identities=21% Similarity=0.351 Sum_probs=80.2
Q ss_pred HHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC-----CEEEEC-CHHHHHHHHHHCCCCC
Q ss_conf 99999998748-6567720120012047799999981996001001176532-----101106-4467776532013432
Q gi|254780336|r 279 RNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG-----RTFIEP-SHHIRAFGVKLKHSAN 351 (488)
Q Consensus 279 ~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g-----RtFI~p-~~~~R~~~v~~K~~~~ 351 (488)
.++|+.+|... ..++|.|+-|--+|+|-|..-|+++|+|+.-.=-.|+-.. -.+..- +++.+ .|-+ .-
T Consensus 116 ~~iG~~fA~~f~~~~id~VmTveTkGIplA~~vA~~L~VP~Vi~Rk~~kvTeG~tvsinYvSgss~ri~----tM~L-sk 190 (274)
T PRK09213 116 RKIGRIIASAFADKKIDAVMTVATKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIE----TMSL-SK 190 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCCCEEE----EEEE-EH
T ss_conf 999999998751559988999833586189999998099899997678876797089999963665189----9998-76
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 45533893289740353333388899999853997899996
Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+..=+|.||++|||=+=.|-|.+-++++++|++|.=+-+.+
T Consensus 191 r~L~~gsrVLiIDDFmk~Ggt~~Gm~~L~~Ef~a~vvGigV 231 (274)
T PRK09213 191 RSLKEGSNVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGV 231 (274)
T ss_pred HHCCCCCEEEEECHHHHCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 33699983999834544760889999999971987978999
No 92
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=97.30 E-value=0.0013 Score=45.60 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH
Q ss_conf 99999999999987486567720120012047799999981996001001176532101106446777653201343245
Q gi|254780336|r 274 IYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488)
Q Consensus 274 Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488)
+++.=++|.+++.+.. +.|.|++|.-.|.+-|.-.|..+|++.-..+--..|-+ ++ .++..+....
T Consensus 15 i~~~~~~LA~kI~~~~--~~d~IV~IaRGGliPA~~ls~~L~i~~i~~i~v~~Y~~------~~-~~~~~v~~~~----- 80 (156)
T PRK09177 15 LHRDARALAWRLLPAG--QWKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDH------DN-QGELKVLKAA----- 80 (156)
T ss_pred HHHHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCC------CC-CCCCEEECCC-----
T ss_conf 9999999999998508--98669999147831599999985984057999996156------65-5654254167-----
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCC
Q ss_conf 53389328974035333338889999985399789999658980588656500589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPD 409 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~ 409 (488)
...||+|++|||=.=.|.|++.+.+.+.++.-.-+|....|.+ .|+||..++++
T Consensus 81 ~~~gkkVLIVDDI~DTG~Tl~~vk~~~~~~~~Atl~~K~~s~~--~pD~y~~e~~~ 134 (156)
T PRK09177 81 EGDGEGFLVVDDLVDTGGTARAVREMYPKAHFATVYAKPAGRP--LVDTYVTDVSQ 134 (156)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCEEEECCC
T ss_conf 7778628999534366378999998678855999998256777--89826858689
No 93
>TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=97.24 E-value=0.00023 Score=51.02 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHH-----CCC-------CCCCCCCCCCC-----------HHHHHHHHHHHCCCCE-EHHEECCCC-CCCE
Q ss_conf 999999999874-----865-------67720120012-----------0477999999819960-010011765-3210
Q gi|254780336|r 277 SRRNMGKNLAKE-----SPV-------IADIVVPIPDG-----------GVPAAIGYAKESGIPF-EQGIIRNHY-VGRT 331 (488)
Q Consensus 277 ~R~~lG~~La~~-----~~~-------~~DiV~~VPds-----------g~~aA~gya~~~gip~-~~~lvkn~y-~gRt 331 (488)
.+..+++.||.. ..+ ..|.+||||=| +---|.-.++=+.++. .+.+.|.+- .--.
T Consensus 63 ~~~~I~~~L~~~l~~~~~~~~~T~~L~lp~~iV~vPl~~~R~~~rGFnq~~lL~~~LsR~~~~~n~~~~~~R~~~T~~Q~ 142 (207)
T TIGR00201 63 AQAEIARALASLLALTVSKAKRTTQLDLPDQIVPVPLSKKRKWRRGFNQADLLAQLLSRWLDIFNYSNIVSRLKNTKTQK 142 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHH
T ss_conf 03689999889999998603100023588604405776353211577778998752153000234200343200203466
Q ss_pred EEECCHHHHHHHHH--HCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH-CCCCEEEE
Q ss_conf 11064467776532--0134324553389328974035333338889999985-39978999
Q gi|254780336|r 332 FIEPSHHIRAFGVK--LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRS-AGASEVHL 390 (488)
Q Consensus 332 FI~p~~~~R~~~v~--~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~-aGa~evh~ 390 (488)
+... .+|.+..+ .++..-+..+.||+||||||=+-.|.|+-.+-++|.+ .||.+|-+
T Consensus 143 ~~~~--~~R~~nl~n~f~l~~~~~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~ 202 (207)
T TIGR00201 143 LLKA--KLRKKNLENAFKLKSKKKEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQV 202 (207)
T ss_pred HHHH--HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 6658--77777755666542032468875589970451012368999999986457001144
No 94
>pfam09147 DUF1933 Domain of unknown function (DUF1933). Members of this family are predominantly found in carbapenam synthetase, and are composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined.
Probab=97.04 E-value=0.019 Score=37.26 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=78.5
Q ss_pred EEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECCE-EEEEEECCCC
Q ss_conf 999655087899999998649824234307898898987302567056899998653043999963997-9999825665
Q gi|254780336|r 113 IAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTK-LIATRDPIGI 191 (488)
Q Consensus 113 iaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Gayslv~l~~~~-l~~~RDp~Gi 191 (488)
.-.=|+|+|-.-|+.-.-.-...--.-+|+|++..+..+- -..++..-+|.|++.+=++++ +.++-|+.|+
T Consensus 51 ayLIGsiyNr~~L~~lag~~eg~a~v~nD~ElL~~i~~~l--------G~~aL~LAEGdfcffiEdkng~L~liTds~G~ 122 (201)
T pfam09147 51 AYLIGSLYNKRLLRHLAGHFEGGVPVVNDAEILYLISTQL--------GSAALGLAEGDFCFFIEDRNGTLTVITESRGQ 122 (201)
T ss_pred EEEEEEECCHHHHHHHHHEEECCCEEECCHHHHHHHHHHH--------HHHHHHHHCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 8999874018899986521526623335188999999986--------04555441474689996589738999657898
Q ss_pred CEEEEEECCCEEE-----------------EEECCHHCCCC----CCC---EEEECCCCEEEEEEECCCCEEEE
Q ss_conf 4159982695699-----------------98612001047----874---12331787079994089847998
Q gi|254780336|r 192 RPLIMGELHGKPI-----------------FCSETCALEIT----GAK---YIRDVENGETIVCELQEDGFISI 241 (488)
Q Consensus 192 RPL~~G~~~~~~v-----------------~ASEs~Al~~i----g~~---~irdv~PGEiivi~~~~~g~~~i 241 (488)
-|.++-..+..|+ |.-|+-+.... .+. .+.-++||-+.++..+..++...
T Consensus 123 ~pv~lV~~~~~WiTnsLK~V~~~eg~~afdF~~E~~V~q~~l~~D~fsPi~N~~RlKPGtin~lt~D~~~Y~~~ 196 (201)
T pfam09147 123 NPVYLVQAGDRWITNSLKLVSALEGHKAFDFQHEPQVGETAVSTDCFSPIRNIQRLKPGTLNVLTFDNADYQVC 196 (201)
T ss_pred CEEEEEECCCEEEECCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCCCCEEEEEECCCCCEEE
T ss_conf 61799824877884212677765056643345602676621268875743242233897468987635673666
No 95
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=96.87 E-value=0.0055 Score=41.15 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=78.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC---------CE---EHHEECCCCCCCEEEECCHHHHHHHHHH
Q ss_conf 99999998748656772012001204779999998199---------60---0100117653210110644677765320
Q gi|254780336|r 279 RNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGI---------PF---EQGIIRNHYVGRTFIEPSHHIRAFGVKL 346 (488)
Q Consensus 279 ~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gi---------p~---~~~lvkn~y~gRtFI~p~~~~R~~~v~~ 346 (488)
++|++..-++..-+.=+++.|-.-|...+.-..+.+.. |. .+-|++=...+-| +.+.+.+ +-
T Consensus 55 e~LA~dI~~dy~g~~i~llcVLKG~~~F~aDLv~~l~~~~~~s~~~~~~~~~~~dFi~vsSY~~~--~SsG~v~---i~- 128 (231)
T PTZ00149 55 EKLAFDIKKVYNNEEFHIICLLKGSRGFFSALLKHLNRIHNYSATESPKHLFGEHYVRVKSYCND--QSLDRIE---IV- 128 (231)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEEECCCC--CCCCCEE---EE-
T ss_conf 99999999984898179999964627889999999876510444456652220005898502798--7667369---92-
Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--C----CCCCCCCCCEECCCH
Q ss_conf 134324553389328974035333338889999985399789999658--9----805886565005897
Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS--P----MVLYPDFYGIDIPDP 410 (488)
Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s--P----pi~~pc~yGid~p~~ 410 (488)
.-+.+.++||.|++|+|=|=.|.|++.+++.|++.+|+.|.++.-- | .=..|.|.|..+|..
T Consensus 129 --~d~~~~l~gk~VLIVEDIvDTG~Tl~~l~~~l~~~~p~svkv~~LL~K~~~r~~~~~~DyvGFeIpd~ 196 (231)
T PTZ00149 129 --SEDLSCLKDKHVLIVEDIIDTGKTLLKFCEYLKKFEIKTIAIACLFIKRTPLWNGFKADFVGFSIPDA 196 (231)
T ss_pred --CCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf --26633268984999955277178999999999737999689999785675444799986586865997
No 96
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.029 Score=35.99 Aligned_cols=142 Identities=20% Similarity=0.300 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHC------CCCEEHHEECCCCCCCEEEECCHHHH
Q ss_conf 003728999999999999874865677-20120012047799999981------99600100117653210110644677
Q gi|254780336|r 268 IISGRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKES------GIPFEQGIIRNHYVGRTFIEPSHHIR 340 (488)
Q Consensus 268 ~~~g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~------gip~~~~lvkn~y~gRtFI~p~~~~R 340 (488)
++|...++.+=-++-.++.+++.-.-+ +++|++--|.+-|.-.++.+ .+|+.+-= =||--.+-..-
T Consensus 6 ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lD-------It~yRDDl~~~ 78 (179)
T COG2065 6 ILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELD-------ITLYRDDLTQK 78 (179)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE-------EEEEECHHHHC
T ss_conf 07999999999999999999707998559996742878999999999988737788703687-------67851413315
Q ss_pred H-HHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECC------CCCCCCCCCCEECCC-HH
Q ss_conf 7-6532013432455338932897403533333888999998539-9789999658------980588656500589-78
Q gi|254780336|r 341 A-FGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVAS------PMVLYPDFYGIDIPD-PT 411 (488)
Q Consensus 341 ~-~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~s------Ppi~~pc~yGid~p~-~~ 411 (488)
. ..-..|-..+...|.||+|+||||-+-.|-|.|.-+..|.+.| +..|.+++-- =| +.|.|-|=.+|| ++
T Consensus 79 ~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGHRELP-IRaDyVGKniPTs~~ 157 (179)
T COG2065 79 GPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGHRELP-IRADYVGKNIPTSRS 157 (179)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC-CCCCCCCCCCCCCCC
T ss_conf 7667765676475244687899982011147249999999986498535899999838875478-663514476888876
Q ss_pred HHHHCC
Q ss_conf 885466
Q gi|254780336|r 412 ALLANK 417 (488)
Q Consensus 412 eLia~~ 417 (488)
|.+-.+
T Consensus 158 E~V~V~ 163 (179)
T COG2065 158 EEVKVR 163 (179)
T ss_pred CEEEEE
T ss_conf 169999
No 97
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=96.34 E-value=0.027 Score=36.19 Aligned_cols=104 Identities=22% Similarity=0.319 Sum_probs=80.6
Q ss_pred HHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEE-----ECCH--HHHHHHHHHCCCC
Q ss_conf 99999998748-65677201200120477999999819960010011765321011-----0644--6777653201343
Q gi|254780336|r 279 RNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFI-----EPSH--HIRAFGVKLKHSA 350 (488)
Q Consensus 279 ~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI-----~p~~--~~R~~~v~~K~~~ 350 (488)
.+.|+.||.-. .-++|.|+-|--=|+|-|...|+-||.|+--.=-=+|-..=||. --+| +.|+....
T Consensus 114 ski~~ila~~F~d~~ID~V~TV~TKGvPLA~~~A~~LnV~lvivRkD~kvTEGStVSiNYVSGssG~~I~~M~La----- 188 (269)
T TIGR01743 114 SKIGKILASVFIDKEIDAVMTVETKGVPLAYAVAKVLNVPLVIVRKDSKVTEGSTVSINYVSGSSGDRIQKMSLA----- 188 (269)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCEECCCEEEEEEEECCCCHHHHHHHHH-----
T ss_conf 778888754326855787899521882389899876496179998468121053289955676874367888888-----
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 2455338932897403533333888999998539978
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e 387 (488)
=|+.=+|-+|++|||=+==|=|.|-+|.+|+|.-|.=
T Consensus 189 rrSLk~GS~vL~vDDFmkaGGT~~Gm~~LL~EFda~l 225 (269)
T TIGR01743 189 RRSLKKGSKVLIVDDFMKAGGTVKGMIELLKEFDAEL 225 (269)
T ss_pred HHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 8888608908999535554870267888887627110
No 98
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase; InterPro: IPR005946 Synonyms: phosphoribosylpyrophosphate synthetase Phosphoribosyldiphosphate synthetase (PRPPsase, 2.7.6.1 from EC) catalyzes the transfer of an intact diphosphate (PP) group from ATP to ribose-5-phosphate (R-5-P), which results in the formation of AMP and 5-phospho-D-ribosyl--1-diphosphate (PRPP). ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate PRPP is an essential precursor for purine and pyrimidine nucleotides, both in the de novo synthesis and in the salvage pathway as well as in the synthesis of pyridine nucleotide coenzymes. The activity of PRPPsase is highly regulated. Besides competitive inhibition at the substrate binding sites, most PRPPsases are regulated in an allosteric manner, in which ADP generally acts as the most potent inhibitor. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions.; GO: 0000287 magnesium ion binding, 0004749 ribose phosphate diphosphokinase activity, 0009165 nucleotide biosynthetic process.
Probab=96.34 E-value=0.024 Score=36.59 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=90.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCC-CCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 99999987486567720120012047-7999999819-960010011765321011064467776532013432455338
Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESG-IPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAG 357 (488)
Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~g-ip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~g 357 (488)
.+...+.+..+ ..+.++-.||.|-. .|..+++.+| .|+.. +-|.|....+- ....++...++|
T Consensus 148 ~~~~~~~~~~~-~~~~~~~~pd~g~~~~~~~~~~~~~~~~~~~-~~k~r~~~~~~-------------~~~~~~~~~~~g 212 (316)
T TIGR01251 148 VLAEYLKEKLP-LDDPVVVSPDKGGVERAKSVADALGDLPLAL-IDKRRPSAPNE-------------VEVLPLLGDVEG 212 (316)
T ss_pred HHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHHHCCCCEEE-EEECCCCCCCC-------------EEEEEEECCCCC
T ss_conf 88888875327-7664686067323678889997606764233-33113676432-------------354310002367
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCC----HHHHHHCC
Q ss_conf 9328974035333338889999985399789999658980588656500589----78885466
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPD----PTALLANK 417 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~----~~eLia~~ 417 (488)
|.++++||-|-.|.|+-...++|++.||++|.+...-|-...|..--+.-.. -++++..+
T Consensus 213 ~~~~~~dd~~~~gg~~~~~~~~l~~~g~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (316)
T TIGR01251 213 KDVVLVDDIIDTGGTLVKAAELLKEKGAKKVYAAATHGVFSGPALERLANAGEEGLVEEVVVTD 276 (316)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHCCHHHHHHHHCCCCCHHHHHEECC
T ss_conf 5278860210021358999999863484427876512200214688865111100011110002
No 99
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=96.33 E-value=0.011 Score=39.01 Aligned_cols=125 Identities=26% Similarity=0.343 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf 99999999999874---865677201200120477999999819960010011765321011064467776532013432
Q gi|254780336|r 275 YVSRRNMGKNLAKE---SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSAN 351 (488)
Q Consensus 275 y~~R~~lG~~La~~---~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~ 351 (488)
|+.=.++++.||++ ...+.|+++.+--.|...|.-.+..+|+.=-..+.--+| ..+.- ++....+|...-
T Consensus 9 w~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y-~~~~~------~~~~~~v~~~~~ 81 (192)
T COG2236 9 WEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHY-DETAE------RDGEAKVKYPIT 81 (192)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEHHHHHHHHHCCCCEEEEEEEEE-HHHCC------CCCCCEEECCCC
T ss_conf 99999999999999997498776899986786027999999868872479998885-00112------377633612765
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEC
Q ss_conf 45533893289740353333388899999853997899996589805886565005
Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDI 407 (488)
Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~ 407 (488)
-+.+.||+|++|||=.=.|+|+....+.|.+..+.|+-.+.--= +..|.+||.-.
T Consensus 82 ~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l~~-~~~~~~~~~~~ 136 (192)
T COG2236 82 IDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQY-KKSPDYYGEEV 136 (192)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCE
T ss_conf 46558985899823337617699999999853706664433320-46775443101
No 100
>KOG3367 consensus
Probab=94.93 E-value=0.035 Score=35.42 Aligned_cols=163 Identities=20% Similarity=0.295 Sum_probs=85.0
Q ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCC-CCCC
Q ss_conf 1787079994089847998753077656642000001002474300037289999999999998748---65677-2012
Q gi|254780336|r 223 VENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKES---PVIAD-IVVP 298 (488)
Q Consensus 223 v~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~---~~~~D-iV~~ 298 (488)
-.||+.+. -+..| .....+..|... .--||+|.. | +|.-+..+ +.||+.. +-..+ ++..
T Consensus 4 ~~~~~~v~--~dd~~-~~~dlf~ipi~y---~~Dls~v~i--p----~gli~dr~-----~rlakDi~~~~g~~~i~~lc 66 (216)
T KOG3367 4 EKPGVVVS--DDDPG-YDLDLFQIPIHY---TGDLSGVVI--P----HGLIRDRV-----ERLAKDIMKEIGNKPIIFLC 66 (216)
T ss_pred CCCCEEEC--CCCCC-CCCCCCCCCCEE---CCCCCCCCC--C----CCHHHHHH-----HHHHHHHHHCCCCCCEEEEE
T ss_conf 67834825--79888-754100066300---453341203--5----41135678-----77632455412778518999
Q ss_pred CCCCHHHHHHHHHHHCC-------CCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH
Q ss_conf 00120477999999819-------96001001176532101106446777653201343245533893289740353333
Q gi|254780336|r 299 IPDGGVPAAIGYAKESG-------IPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 (488)
Q Consensus 299 VPdsg~~aA~gya~~~g-------ip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt 371 (488)
|-..|--......+.+. +|..--|||-+-.+ ..|..- .++.--.-..+.++||+|++|+|-+=.|.
T Consensus 67 VlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~-----n~~stg--~iqiig~d~l~~ltgK~VliVeDIvdTGr 139 (216)
T KOG3367 67 VLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYC-----NDQSTG--DIQIIGGDDLSTLTGKNVLIVEDIVDTGR 139 (216)
T ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHC-----CCCCCC--CCEEECCCCHHHHCCCCEEEEEEECCCCC
T ss_conf 83241688999999975024577765044554400214-----776557--85166478777735772899974013561
Q ss_pred HHHHHHHHHHHCCCCEEEEEECC-----CCCCC-CCCCCEECCC
Q ss_conf 38889999985399789999658-----98058-8656500589
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVAS-----PMVLY-PDFYGIDIPD 409 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~s-----Ppi~~-pc~yGid~p~ 409 (488)
|++.+++.+++.+|+.|.+++-- -.+-| |.|-|-.+|.
T Consensus 140 Tl~~Lls~~~~~k~~~v~vasLL~Krt~R~v~yk~dy~gFEiPd 183 (216)
T KOG3367 140 TLSTLLSHMKAYKPSMVKVASLLVKRTRRSVGYKPDYVGFEIPD 183 (216)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 07899998886086311432200344433357775422344774
No 101
>TIGR01744 XPRTase xanthine phosphoribosyltransferase; InterPro: IPR010079 This entry represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; Bacillus subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.; GO: 0016763 transferase activity transferring pentosyl groups, 0043101 purine salvage, 0046110 xanthine metabolic process.
Probab=94.61 E-value=0.17 Score=30.48 Aligned_cols=107 Identities=21% Similarity=0.342 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC------CC-CCC--CEEEECCHHHHHHHHH
Q ss_conf 99999999998748656-77201200120477999999819960010011------76-532--1011064467776532
Q gi|254780336|r 276 VSRRNMGKNLAKESPVI-ADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR------NH-YVG--RTFIEPSHHIRAFGVK 345 (488)
Q Consensus 276 ~~R~~lG~~La~~~~~~-~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk------n~-y~g--RtFI~p~~~~R~~~v~ 345 (488)
.--+++|+.-|+...-+ +.=|+-+=-||++-|+=-|-++|+|..-+=-| |. |.- -||-+. |+.-|
T Consensus 33 ~Lm~~vG~~Fa~~Fa~~g~tKilTIE~SGIAPAiM~a~~l~vP~vFakK~kp~Tl~~~~lta~~~SfTK~----~~~~v- 107 (191)
T TIGR01744 33 KLMREVGEEFARRFADKGITKILTIEASGIAPAIMTALELGVPVVFAKKKKPLTLTDQLLTASVHSFTKS----KTSTV- 107 (191)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEECC----CEEEE-
T ss_conf 8899999999985111589749998015841788987854997699982789876568168999998638----67999-
Q ss_pred HCCCCCHHH-HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 013432455-338932897403533333888999998539978999
Q gi|254780336|r 346 LKHSANRTI-LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 346 ~K~~~~~~~-i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
..=++. =...+|++|||=+=-|.|++.++++...|||+=+=+
T Consensus 108 ---~vS~~fL~~~D~vl~IDDFLA~G~a~~gL~~i~~qA~A~~~G~ 150 (191)
T TIGR01744 108 ---IVSKEFLSDQDRVLIIDDFLANGDAARGLVDIAEQAGAKIAGI 150 (191)
T ss_pred ---EEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf ---9861437899889999513466616788999998619958854
No 102
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase; InterPro: IPR005904 Phosphoribosyltransferases (PRT) are enzymes that catalyze the synthesis of beta-n-5'-monophosphates from phosphoribosylpyrophosphate (PRPP) and an enzyme specific amine. A number of PRT's are involved in the biosynthesis of purine, pyrimidine, and pyridine nucleotides, or in the salvage of purines and pyrimidines. Purine nucleotides are synthesized both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. This entry presents hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC), which belongs to phosphoribosyltransferase family and is involved in purine salvage.; GO: 0004422 hypoxanthine phosphoribosyltransferase activity, 0006166 purine ribonucleoside salvage, 0005737 cytoplasm.
Probab=94.46 E-value=0.42 Score=27.72 Aligned_cols=117 Identities=15% Similarity=0.267 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CCC-----CCCCCCCCHHHHHHHHHHHCC----------CCEEHHEECCCCCCCEE
Q ss_conf 03728999999999999874865-677-----201200120477999999819----------96001001176532101
Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESPV-IAD-----IVVPIPDGGVPAAIGYAKESG----------IPFEQGIIRNHYVGRTF 332 (488)
Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~~-~~D-----iV~~VPdsg~~aA~gya~~~g----------ip~~~~lvkn~y~gRtF 332 (488)
+....|..-=++||++..++..- .+| +|++|-.-|.+.--=.+++.. .|...-|+.=.-.|-+.
T Consensus 3 i~~~~i~~r~~eLa~~I~~~Y~~~~~tt~~~l~~~gvLKGs~~F~aDL~~~i~~~~~~S~RS~~~~~~dFm~vSSYg~~~ 82 (183)
T TIGR01203 3 ISEEQIKARIAELAKQITEDYQGKKPTTDEELVLVGVLKGSFPFFADLIRAIDKLNKYSDRSVVPVQVDFMAVSSYGNGM 82 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCC
T ss_conf 67899999999999999987356789989738999972562445999999988742206873011488889887507983
Q ss_pred EECCHHHHHHHHHHCCCCCHHHHC-CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 106446777653201343245533-893289740353333388899999853997899996
Q gi|254780336|r 333 IEPSHHIRAFGVKLKHSANRTILA-GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 333 I~p~~~~R~~~v~~K~~~~~~~i~-gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+..++ ||+..- +..-|+ ||.|+||+|=|=.|.|++.+...|+.-+||.+-+++
T Consensus 83 ----~s~g~--vki~kD-ld~di~~gk~VLiVEDIvDtG~Tl~~~~~~L~~r~Pksl~i~~ 136 (183)
T TIGR01203 83 ----SSSGD--VKILKD-LDEDIKRGKDVLIVEDIVDTGLTLSYLLELLKARKPKSLKIVT 136 (183)
T ss_pred ----EEECC--EEEEEC-CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf ----03111--379852-7898403781899961534246799999987138993689999
No 103
>KOG1448 consensus
Probab=94.18 E-value=0.14 Score=31.23 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCHHHH-HHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHH
Q ss_conf 65677201200120477-99999981996001001176532101106446777653201343245533893289740353
Q gi|254780336|r 290 PVIADIVVPIPDGGVPA-AIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIV 368 (488)
Q Consensus 290 ~~~~DiV~~VPdsg~~a-A~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIV 368 (488)
+---|+|+--||-|-.. +...|..+.+-+.. +.|.|- |. ..|.... .+-.-++||..|||||=+=
T Consensus 160 ~~~~~~vivSPdaGgaKR~~s~ad~l~~~fal-i~ker~--k~----------~~v~~~m-~LVGDv~gkvaIlVDDm~d 225 (316)
T KOG1448 160 PDSENAVIVSPDAGGAKRVTSLADRLNLDFAL-IHKERR--KA----------NEVDIRM-VLVGDVKGKVAILVDDMAD 225 (316)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCHHHH-HHHHHH--CC----------CCCCEEE-EEEECCCCCEEEEECCCCC
T ss_conf 87453189878864556667777752115553-301420--04----------5542589-9985367868999436411
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 3333888999998539978999965
Q gi|254780336|r 369 RGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 369 RGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
.+.|+-.--+.|.++||+||..-++
T Consensus 226 t~GTl~~aa~~L~~~GA~kV~a~~T 250 (316)
T KOG1448 226 TCGTLIKAADKLLEHGAKKVYAIVT 250 (316)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 3641999999998658745999971
No 104
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=94.07 E-value=0.21 Score=29.88 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHH--CCC-CCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH
Q ss_conf 9999999999874--865-6772012001204779999998199600100117653210110644677765320134324
Q gi|254780336|r 276 VSRRNMGKNLAKE--SPV-IADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488)
Q Consensus 276 ~~R~~lG~~La~~--~~~-~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488)
+.+.-.++.++.. +.+ +.|.|.|+-=-|+|.|-..|-.+..|...-|.--.| -|+-. +-.+.+-. =+.+-
T Consensus 39 ~~~~~~~~~~~~~~~~~lPe~d~iaG~alggiPiA~~vs~~~~~~~~~kf~~~~~---~~~RK--e~KdhG~g--~~i~G 111 (187)
T TIGR00336 39 ELANLIAEYIAAIIKDHLPEFDVIAGPALGGIPIATAVSVKLAKPEGSKFLDIPL---LIVRK--EAKDHGEG--GNIEG 111 (187)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEE---EEEEC--CCCCCCCC--CCEEC
T ss_conf 9999999999998641289524664242352258999999983558860005048---99833--61455689--81456
Q ss_pred -HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf -5533893289740353333388899999853997899996589805886565005897888546699988999870997
Q gi|254780336|r 353 -TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVD 431 (488)
Q Consensus 353 -~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igad 431 (488)
++.+|+||++|||=|=-||....-++.++++|+.=.-+-+. + +|+|-+.......+|+.+.-|+.
T Consensus 112 P~~~eG~kvvvveDV~TtG~s~~~A~~~i~~ag~~V~~v~~~-----------v---DR~e~~~~E~~A~~~f~~~y~~~ 177 (187)
T TIGR00336 112 PELLEGDKVVVVEDVITTGGSILEAVEAIQEAGGEVAGVIVI-----------V---DRQERGKGELSAGQEFEKEYGLP 177 (187)
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEE-----------E---ECCCCCCCCCCHHHHHHHHHCCE
T ss_conf 765789638999514342479999999998618889999999-----------8---26724331013345546552864
No 105
>KOG1712 consensus
Probab=93.62 E-value=0.27 Score=29.10 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=72.3
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECC-HHHHHHHHHHCCCCCHHHH-CCCCEEEEEH
Q ss_conf 4865677201200120477999999819960010011765321011064-4677765320134324553-3893289740
Q gi|254780336|r 288 ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPS-HHIRAFGVKLKHSANRTIL-AGKRVVLIDD 365 (488)
Q Consensus 288 ~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~-~~~R~~~v~~K~~~~~~~i-~gk~vvlvDD 365 (488)
....++|+|+|+---|-...-..|-++|.+|..-=-+++--|.++-..= -+--.....| .++.| .|.||++|||
T Consensus 55 ~~~~~Id~iaGlEaRGFLFGP~iAlalG~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Em----q~~Ai~~g~rvvvVDD 130 (183)
T KOG1712 55 TFEMKIDVIAGLEARGFLFGPSIALALGAGFVPIRKPGKLPGEVISESYELEYGEDRFEM----QKGAIKPGQRVVVVDD 130 (183)
T ss_pred HHCCCCEEEEEEEECCEECCCHHHHHHCCCEEECCCCCCCCCCEEEEEEEEECCCCCEEE----ECCCCCCCCEEEEEEC
T ss_conf 736761299854104400283899983897566146898987546778765027001121----1245699875899830
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEE--EEEECCCCCC
Q ss_conf 35333338889999985399789--9996589805
Q gi|254780336|r 366 SIVRGTTSVKIVQMIRSAGASEV--HLRVASPMVL 398 (488)
Q Consensus 366 SIVRGtT~k~iv~~lr~aGa~ev--h~ri~sPpi~ 398 (488)
=+-.|-|+..-..+|.++||+=+ -+.+--|++.
T Consensus 131 llATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~Lk 165 (183)
T KOG1712 131 LLATGGTLAAATELLERVGAEVVECACVIELPELK 165 (183)
T ss_pred HHHCCCCHHHHHHHHHHHCCEEEEEEEEEECCCCC
T ss_conf 01137418999999997254788789999706537
No 106
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=93.47 E-value=0.062 Score=33.65 Aligned_cols=49 Identities=10% Similarity=0.249 Sum_probs=42.9
Q ss_pred HHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3201343245533893289740353333388899999853997899996
Q gi|254780336|r 344 VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 344 v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
...-|+-+++.+.++.|+|+|-=+-.|.|+-..++.|++.|+++|++.+
T Consensus 110 p~~yy~kLP~~i~~~~VlllDPmlATG~s~~~ai~~L~~~G~~~I~~v~ 158 (208)
T PRK00129 110 PVEYLEKLPSDIDERTVIVVDPMLATGGSMIAAIDLLKKRGAKRIKVLC 158 (208)
T ss_pred EEEEHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 0675632864446687998785564376699999999966997389999
No 107
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=93.46 E-value=0.46 Score=27.46 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHHHHHHCC--CCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCC
Q ss_conf 9999999999874---865677201200120477999999819--96001001176532101106446777653201343
Q gi|254780336|r 276 VSRRNMGKNLAKE---SPVIADIVVPIPDGGVPAAIGYAKESG--IPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSA 350 (488)
Q Consensus 276 ~~R~~lG~~La~~---~~~~~DiV~~VPdsg~~aA~gya~~~g--ip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~ 350 (488)
+.=.+||..||+. ...+.|.||+===-|+.++.-.|+++. +|=...|.- +|+..=.|||--
T Consensus 39 ~~~~~lg~~LA~~i~~~~~~~d~ivsPA~GGv~~~Ye~AR~L~etlPd~R~iF~--------------Er~gsg~mkLRr 104 (205)
T TIGR01367 39 ELAEKLGEELAKKILKYKLEVDVIVSPAMGGVILGYEVARALSETLPDVRSIFA--------------EREGSGGMKLRR 104 (205)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEE--------------EEECCCCCEECC
T ss_conf 689999999999999827870158647300046888999874100688852677--------------760787520111
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 24553389328974035333338889999985399789999
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
==.+=.|.++|+|.|=|-.|-.++..|++++++|+.=|=+.
T Consensus 105 gF~v~pGek~v~vEDvvTTGGS~~e~~~~i~~~GG~vvg~a 145 (205)
T TIGR01367 105 GFEVKPGEKVVVVEDVVTTGGSLLEAIKAIEELGGQVVGLA 145 (205)
T ss_pred CEEECCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 20336997799996211047448999999985798279842
No 108
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=93.25 E-value=0.53 Score=27.04 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 33388899999853997899996589
Q gi|254780336|r 370 GTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 370 GtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
|--+..-++.|.+.|..||.+-=+-|
T Consensus 242 glfs~~A~~rl~~s~i~~ivvTnTip 267 (286)
T PRK00934 242 PVLVEDAINKIHSAGADELAVTNTIP 267 (286)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 00780599999748998899858889
No 109
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=93.15 E-value=0.64 Score=26.43 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCEECCCHHHHHH
Q ss_conf 3338889999985399-789999658980588656500589788854
Q gi|254780336|r 370 GTTSVKIVQMIRSAGA-SEVHLRVASPMVLYPDFYGIDIPDPTALLA 415 (488)
Q Consensus 370 GtT~k~iv~~lr~aGa-~evh~ri~sPpi~~pc~yGid~p~~~eLia 415 (488)
|--+..-++.|.+.|. +||.+-=+.|--...++-.+-.=+-..|+|
T Consensus 268 gvfsg~A~~rl~~s~ii~~vvvTdTip~~~~~~~~ki~vlsvA~llA 314 (331)
T PRK02812 268 AVFSPPAIERLSASGLFEEVIVTNTIPVPEERRFPQLKVLSVANMLG 314 (331)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCCEEEEHHHHHH
T ss_conf 65587799999728976779980894485000699819987389999
No 110
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=92.71 E-value=0.89 Score=25.42 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 333888999998539978999965898
Q gi|254780336|r 370 GTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 370 GtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
|--+..-++.|.+++..||.+-=+-|.
T Consensus 246 glfs~~A~~rl~~s~i~~iv~TnTip~ 272 (309)
T PRK01259 246 PVLSGGAAERIANSVLDELVVTDSIPL 272 (309)
T ss_pred HHCCHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 313945999987089988998189668
No 111
>PRK01506 consensus
Probab=92.37 E-value=0.92 Score=25.31 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=30.7
Q ss_pred CCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 32101106446777653201343245533893289740353333388899999853997899996589
Q gi|254780336|r 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 328 ~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
.|.|++...+.+++.+.+.-+- . .+-|--+..-.+.|.++|..+|.+-=+-|
T Consensus 229 TGgTl~~aa~~Lk~~GA~~V~~------------~----~THglfs~~A~~rl~~s~i~~iv~TnTip 280 (317)
T PRK01506 229 TAGTITLAANALVENGASEVYA------------C----CTHPVLSGPAIERIQNSKIKELVVTNSIV 280 (317)
T ss_pred CCCHHHHHHHHHHHCCCCEEEE------------E----EECCCCCCHHHHHHHCCCCCEEEEECCCC
T ss_conf 3505999999998659975899------------9----97700681799998618998899938844
No 112
>PRK04117 consensus
Probab=92.28 E-value=0.84 Score=25.59 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCEECCCHHHHHH
Q ss_conf 888999998539978999965898058-8656500589788854
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLY-PDFYGIDIPDPTALLA 415 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~-pc~yGid~p~~~eLia 415 (488)
+..-.+.|.++|.+||.+-=+-|.-.. |. +-.=+-..|+|
T Consensus 252 s~~A~~rl~~s~i~~ivvTnTip~~~~~~k---l~~isVa~llA 292 (309)
T PRK04117 252 SGPAYERIAKGALDELVVTNTIPLKEELPK---IKVLSVAPLFA 292 (309)
T ss_pred CCHHHHHHHHCCCCEEEECCCCCCCCCCCC---EEEEEHHHHHH
T ss_conf 836999998389978998289877445998---09988399999
No 113
>PRK05259 consensus
Probab=92.27 E-value=0.88 Score=25.46 Aligned_cols=42 Identities=17% Similarity=0.034 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCC--CCCCCEECCCHHHHHH
Q ss_conf 888999998539978999965898058--8656500589788854
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLY--PDFYGIDIPDPTALLA 415 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~--pc~yGid~p~~~eLia 415 (488)
+..-++.|.++|.+||.+-=+-||... .|. -+-+=+-..|+|
T Consensus 250 s~~A~~ri~~s~i~~vvvTdTi~~~~~~~~~~-kl~vlsva~llA 293 (310)
T PRK05259 250 SGGAVARIASSKLKELVITDSIQPTEAVNDAP-NIRVLSIAPLIG 293 (310)
T ss_pred CCHHHHHHHCCCCCEEEEECCCCCCHHHHCCC-CCEEEEHHHHHH
T ss_conf 85699998628997899938978884570589-939998299999
No 114
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=91.45 E-value=0.98 Score=25.10 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=76.2
Q ss_pred HCCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCH
Q ss_conf 0024743000-3728999999999999874865677-2012001204779999998199600100117653210110644
Q gi|254780336|r 260 VYFARPDSII-SGRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSH 337 (488)
Q Consensus 260 IYFarpdS~~-~g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~ 337 (488)
||+.--+|.+ -|.+++++=+-|.+. .| ||+-.+..+. ...+|+.+.+|..-|+-- +=-|+|
T Consensus 75 i~l~~~~s~~~kgEsl~Dt~~vLs~~--------~D~iv~R~~~~~~--~~~la~~s~vPVINg~~~-------~~HPtQ 137 (334)
T PRK12562 75 TYLGPSGSQIGHKESIKDTARVLGRM--------YDGIQYRGHGQEV--VETLAEYAGVPVWNGLTN-------EFHPTQ 137 (334)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHH--------CCEEEECCCCCHH--HHHHHHHCCCCEEECCCC-------CCCCHH
T ss_conf 98587645278998889999999860--------7778973557389--999999759998889987-------767179
Q ss_pred HHHHHH-HHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 677765-3201343245533893289740353333388899999853997899996589805886
Q gi|254780336|r 338 HIRAFG-VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPD 401 (488)
Q Consensus 338 ~~R~~~-v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc 401 (488)
.+=+.. ++.++- ...++|.+|+.|.|. +.+..+..+.++...|+ +|++++|+--.|-
T Consensus 138 aL~Dl~Ti~E~~~--g~~l~~l~i~~vGD~--~n~va~S~i~~~~~lG~---~v~~~~P~~~~p~ 195 (334)
T PRK12562 138 LLADLLTMQEHLP--GKAFNEMTLVYAGDA--RNNMGNSMLEAAALTGL---DLRLVAPQACWPE 195 (334)
T ss_pred HHHHHHHHHHHHC--CCCCCCEEEEEECCC--CCCHHHHHHHHHHHCCC---EEEEECCCCCCCC
T ss_conf 9999999999846--898677189996888--66357999999997498---6999789766888
No 115
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=91.01 E-value=1.3 Score=24.17 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHH-HHCC
Q ss_conf 728999999999999874865677-20120012047799999981996001001176532101106446777653-2013
Q gi|254780336|r 271 GRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV-KLKH 348 (488)
Q Consensus 271 g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v-~~K~ 348 (488)
|.++.++=+-+ ..- .| ||+=.++.+.+ .-+|+.+.+|.--|+-. .. -|+|.+=+..- +.++
T Consensus 85 gEsl~DT~~vl----s~~----~D~iviR~~~~~~~--~~la~~~~vPVINg~~~------~~-HPtQaL~Dl~Ti~e~~ 147 (341)
T PRK02255 85 HESIEDTARVL----SRM----VDIIMARVLRHQTV--VELAKYATVPVINGMSD------YN-HPTQELGDVFTMLEHL 147 (341)
T ss_pred CCCHHHHHHHH----HHH----CCEEEEEECCCHHH--HHHHHHCCCCEEECCCC------CC-CCHHHHHHHHHHHHHH
T ss_conf 76699999999----863----78899993484679--99998679998978998------87-7278999899999986
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 4324553389328974035333338889999985399789999658980
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
+-...++|++|.+|-|. -++.+..+.++...|+ |+++++|+=
T Consensus 148 -~~~~~l~glkva~vGD~---~nv~~S~~~~~~~~g~---~~~~~~P~~ 189 (341)
T PRK02255 148 -PAGKKLEDCKVVFVGDA---TQVCSSLMFITTKMGM---DFVHFGPKG 189 (341)
T ss_pred -HCCCCCCCCEEEEECCC---CHHHHHHHHHHHHCCC---EEEEECCCC
T ss_conf -01798456568872685---3448899999997599---899987974
No 116
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=88.49 E-value=0.82 Score=25.68 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCHHHCCEEEEEECCCC-----HHHHHHHHHHHHHCCC-CCEEEEEEE
Q ss_conf 31011565999981853-----3689999998773158-870279999
Q gi|254780336|r 9 KQINEKCGVFGILGHPD-----AATLTAIGLHALQHRG-QEATGIISF 50 (488)
Q Consensus 9 ~~~~~eCGI~Gi~~~~~-----~~~~~~~gL~~LQHRG-qdsaGIa~~ 50 (488)
+.-|+.|||+||...+. .......+|..|+||| ++|+|.+-.
T Consensus 7 ~~e~daCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~~gd 54 (371)
T COG0067 7 AFEHDACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGD 54 (371)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 766406757999964898412699999999973202699887764345
No 117
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=88.04 E-value=2.2 Score=22.61 Aligned_cols=96 Identities=20% Similarity=0.299 Sum_probs=58.8
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHCCCCEEHHEECCCCCC----CEEE--------ECC-----HHHHHHHHHHCCCCCHHH
Q ss_conf 7720120-012047799999981996001001176532----1011--------064-----467776532013432455
Q gi|254780336|r 293 ADIVVPI-PDGGVPAAIGYAKESGIPFEQGIIRNHYVG----RTFI--------EPS-----HHIRAFGVKLKHSANRTI 354 (488)
Q Consensus 293 ~DiV~~V-Pdsg~~aA~gya~~~gip~~~~lvkn~y~g----RtFI--------~p~-----~~~R~~~v~~K~~~~~~~ 354 (488)
+.+.+.+ |+.|..+|.-+.++.|+||-.. ...+| ..|+ ++. .++|. ....++...+..
T Consensus 194 A~~ni~~~~~~g~~~a~~L~~~~g~P~i~~---~~P~G~~~T~~~l~~i~~~~g~~~~~~~i~~e~~-~~~~~~~~~~~~ 269 (398)
T pfam00148 194 AALNIVLCPESGRYAAKYLEERFGVPYIEL---GSPIGIEATDRFLRALAELLGKEVAPEVIAEERG-RLLDALADYHEY 269 (398)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHCCCEEEC---CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 859999888888999999999829976844---7767778999999999999689987789999999-999999999887
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 338932897403533333888999998539978999965898
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
++||++.++=|+ +..-.+.+.|+|.|..=+++....++
T Consensus 270 l~gkrv~v~g~~----~~~~~l~~~L~ElG~~v~~~~~~~~~ 307 (398)
T pfam00148 270 LAGKRVAIYGDP----DLAWGLARFLEELGMEVVAVGTGTGH 307 (398)
T ss_pred HCCCEEEEECCC----HHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 379779998884----57999999999879979999967898
No 118
>TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765 The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP). UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage.
Probab=86.90 E-value=1 Score=24.96 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=62.3
Q ss_pred CCCCCCCCHHHHHHHHHHHC-CCC-EEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 20120012047799999981-996-0010011765321011064467776532013432455338932897403533333
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKES-GIP-FEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~-gip-~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488)
+||||--=|++---|..+.. ... .--|+.||.=.|| | + +..=|+-+++.+.++.|+++|==+=-|.|
T Consensus 75 v~vPILRAGLgm~dG~~~~~P~A~vG~~G~~R~eeTG~-l-~---------~~~Yy~KLP~~~~~~~v~v~DPMLATGgt 143 (213)
T TIGR01091 75 VLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETGE-L-K---------PVVYYSKLPEDIDERTVIVLDPMLATGGT 143 (213)
T ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCC-E-E---------EEECCCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf 99961010268999999848877189998773699985-2-0---------25322005434688869997287343058
Q ss_pred HHHHHHHHHHCCCCEEEE--EECCCC
Q ss_conf 888999998539978999--965898
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHL--RVASPM 396 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~--ri~sPp 396 (488)
+-..++.|++.|+++|-+ .+|||.
T Consensus 144 ~~~a~~~lk~~g~~~I~~~~~vAAPe 169 (213)
T TIGR01091 144 MIAALDLLKKRGAKKIKVLSIVAAPE 169 (213)
T ss_pred HHHHHHHHHHCCCCCEEEEEEEECHH
T ss_conf 99999999853999449999982557
No 119
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=86.51 E-value=2.7 Score=22.02 Aligned_cols=109 Identities=16% Similarity=0.248 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHH-HHHHCC
Q ss_conf 3728999999999999874865677201200120477999999819960010011765321011064467776-532013
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAF-GVKLKH 348 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~-~v~~K~ 348 (488)
.|.+++++=+-+++. .++ ||+=.++.+.+ .-+|+.+++|.--|+-. . --|+|.+=+. -++.+|
T Consensus 86 kgEsl~DTarvLs~~----~D~---Iv~R~~~~~~~--~~~a~~s~vPVINg~~~------~-~HPtQaL~Dl~Ti~E~~ 149 (334)
T PRK03515 86 HKESIKDTARVLGRM----YDG---IQYRGYGQEIV--ETLAEYAGVPVWNGLTN------E-FHPTQLLADLLTMQEHL 149 (334)
T ss_pred CCCCHHHHHHHHHHC----CCE---EEEECCCHHHH--HHHHHHCCCCEEECCCC------C-CCCHHHHHHHHHHHHHH
T ss_conf 898789999999961----887---99967554899--99998769876648988------8-78679999999999985
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 43245533893289740353333388899999853997899996589805886
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPD 401 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc 401 (488)
- +..++|.+|.+|-|. +.+.....+.++...|+ ++++++|+--.|-
T Consensus 150 ~--~~~l~~lkia~vGD~--~nnv~~Sl~~~~~~~g~---~~~~~~P~~~~p~ 195 (334)
T PRK03515 150 P--GKAFNEMTLAYAGDA--RNNMGNSLLEAAALTGL---DLRLVAPKACWPE 195 (334)
T ss_pred C--CCCCCCEEEEEECCC--CCCHHHHHHHHHHHCCC---EEEEECCCCCCCC
T ss_conf 6--897566489995787--65458999999985497---4999779756888
No 120
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=84.89 E-value=2 Score=22.97 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=17.5
Q ss_pred HHHHCCCCEEEEEHHHHHHHH---------------HHHHHHHHHHCCCCEEEEE
Q ss_conf 455338932897403533333---------------8889999985399789999
Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTT---------------SVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT---------------~k~iv~~lr~aGa~evh~r 391 (488)
.+.++| ..+++||+++|-+- +..++..+++.+++++.+-
T Consensus 81 eSl~~g-~~vlcdDg~iRDl~~~~gkyk~~E~t~~Al~lil~~lk~~~~k~vi~L 134 (211)
T COG2454 81 ESLLKG-EAVLCDDGVIRDLRGVQGKYKINEKTDKALDLLLEFLKDVEPKSVIFL 134 (211)
T ss_pred HHHHCC-CEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 988559-679823740023254315203556789999999999987298648998
No 121
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=84.01 E-value=3.4 Score=21.23 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHH-HHHHCC
Q ss_conf 3728999999999999874865677201200120477999999819960010011765321011064467776-532013
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAF-GVKLKH 348 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~-~v~~K~ 348 (488)
-|.+++++=+-++.. .+. ||+-.|..+.+ .-+|+.+++|.--|+-. . + -|+|.+=+. .++.++
T Consensus 87 kGEs~~Dt~~~Ls~~----~D~---iviR~~~~~~~--~~~a~~~~vPVIN~~~~-----~-~-HPtQ~L~Dl~Ti~e~~ 150 (331)
T PRK02102 87 KKESMEDTARVLGRM----YDG---IEYRGFSQEIV--EELAKYSGVPVWNGLTD-----E-W-HPTQMLADFMTMKEHF 150 (331)
T ss_pred CCCCHHHHHHHHHHH----CCE---EEEECCCHHHH--HHHHHHCCCCEECCCCC-----C-C-CHHHHHHHHHHHHHHH
T ss_conf 898989999999975----167---89962772899--99997479864548887-----6-4-8799999999999983
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 43245533893289740353333388899999853997899996589805886
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPD 401 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc 401 (488)
..++|++|++|-| .|-++.+..+.++...|+ ++++++|+-..|-
T Consensus 151 ----g~l~gl~i~~vGD--~~nnVa~S~~~~~~~lG~---~v~~~~P~~~~p~ 194 (331)
T PRK02102 151 ----GPLKGLKLAYLGD--GRNNMANSLLVGGAKLGM---DVRICAPKSLWPE 194 (331)
T ss_pred ----CCCCCCEEEEECC--CCCCHHHHHHHHHHHCCC---EEEEECCCCCCCC
T ss_conf ----8756773899788--764246689999985598---5999758644889
No 122
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=83.83 E-value=1.4 Score=23.99 Aligned_cols=111 Identities=24% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHH-HH
Q ss_conf 0003728999999999999874865677-201200120477999999819960010011765321011064467776-53
Q gi|254780336|r 267 SIISGRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAF-GV 344 (488)
Q Consensus 267 S~~~g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~-~v 344 (488)
|+--|.+.++.=+- |+-- +| ||+--|..|-+.. +|+.+.+|...+- -|- ---|||.+=+. -+
T Consensus 166 S~~KGEsl~DT~r~----l~~Y----~D~iV~RHp~~Gs~~~--aa~~s~vPVINaG-----DG~-~eHPTQaLLDl~TI 229 (430)
T PRK11891 166 SMAKGESIYDTSRV----MSGY----VDALVIRHPEQGSVAE--FARATNLPVINGG-----DGP-GEHPSQALLDLYTI 229 (430)
T ss_pred CCCCCCCHHHHHHH----HHCC----CCEEEEECCCCCHHHH--HHHHCCCCEEECC-----CCC-CCCCHHHHHHHHHH
T ss_conf 42377779999999----9626----9899991898358999--9864798736357-----886-66832677777889
Q ss_pred HHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 2013432455338932897403533333888999998539978999965898
Q gi|254780336|r 345 KLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 345 ~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+..+.-+...+.|.+|.+|-| +--|-|...++++|......+ +.-.|||
T Consensus 230 ~~e~g~~~~~idGl~IalvGD-LKyGRTVHSL~klLs~y~~v~--~~lVSP~ 278 (430)
T PRK11891 230 QREFSRLGKIVDGAHIALVGD-LKYGRTVHSLVKLLALYRGLK--FTLVSPP 278 (430)
T ss_pred HHHHCCCCCCCCCCEEEEECC-CCCCCCHHHHHHHHHHCCCCE--EEEECCH
T ss_conf 987532235557857998645-456600989999998546946--9998921
No 123
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=82.83 E-value=3.8 Score=20.91 Aligned_cols=109 Identities=18% Similarity=0.304 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHH-HHHHC
Q ss_conf 3728999999999999874865677-201200120477999999819960010011765321011064467776-53201
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAF-GVKLK 347 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~-~v~~K 347 (488)
-|.+++++= +.|..- .| ||+=.|+.+.+ .-+|+.+.+|.--|+--.+ + -|+|.+=+. -++.+
T Consensus 86 kGEsi~DTa----rvls~y----~D~iviR~~~~~~~--~e~a~~s~vPVINa~~~~~-----~-HPtQaLaDl~Ti~e~ 149 (338)
T PRK08192 86 KGESLYDTA----RVLSTY----SDVIAMRHPDAYSV--KEFAEGSRVPVINGGDGSN-----E-HPTQALLDLFTIQKE 149 (338)
T ss_pred CCCCHHHHH----HHHHCC----CCEEEEECCCHHHH--HHHHHCCCCCEEECCCCCC-----C-CCHHHHHHHHHHHHH
T ss_conf 897899999----998615----98999988510048--9987418987896788987-----6-827898889999999
Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCC
Q ss_conf 343245533893289740353333388899999853-997899996589805
Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSA-GASEVHLRVASPMVL 398 (488)
Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~a-Ga~evh~ri~sPpi~ 398 (488)
|.-....++|++|..|-| +-.|++...++.+|... | +++.+++|+-.
T Consensus 150 ~~~~~~~l~glkia~vGD-~~~~r~~~s~~~ll~~~~g---~~~~l~~P~~~ 197 (338)
T PRK08192 150 LAHAGRGIDGMHIAMVGD-LKFGRTVHSLSRLLCMYKN---ISFTLISPKEL 197 (338)
T ss_pred HHHCCCCCCCCEEEEECC-CCCCHHHHHHHHHHHHHCC---CEEEEECCCCC
T ss_conf 874089855748999767-7756389999999996559---88999899877
No 124
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=81.72 E-value=2 Score=22.87 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=6.8
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999864982
Q gi|254780336|r 123 LTLRKKLISSGAI 135 (488)
Q Consensus 123 ~eLr~~L~~~g~~ 135 (488)
+.+.+.|.+.|..
T Consensus 46 ~~v~~~L~~~gi~ 58 (366)
T PRK09423 46 DTVEASLKDAGLD 58 (366)
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999867986
No 125
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=79.37 E-value=3 Score=21.65 Aligned_cols=45 Identities=9% Similarity=0.309 Sum_probs=39.1
Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 1343245533893289740353333388899999853-99789999
Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSA-GASEVHLR 391 (488)
Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~a-Ga~evh~r 391 (488)
-|.-+++.++++.|+++|-=+-.|.|+-..++.|++. |++.|-+.
T Consensus 114 yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v 159 (210)
T COG0035 114 YYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVV 159 (210)
T ss_pred HHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5875898646885999786141267699999999971897528999
No 126
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=77.60 E-value=5.5 Score=19.75 Aligned_cols=65 Identities=26% Similarity=0.415 Sum_probs=49.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCC-CCHHHHHHHHCCCE
Q ss_conf 53389328974035333338889999985399789999658980588656500589788854669-99889998709977
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKC-SSPQEMCNFIGVDS 432 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~-~~~eei~~~igads 432 (488)
-++||++++|-- |-+.+.+++.|.+.|+++|++ +++. ...+++++.+|...
T Consensus 9 ~l~~~~vlVIGa----G~~~~~~~~~L~~~g~~~i~v------------------------~nRt~~ka~~la~~~~~~~ 60 (134)
T pfam01488 9 DLKGKKVLLIGA----GEMARLAAKHLLSKGAKKITI------------------------ANRTLEKAKELAEEFGGEE 60 (134)
T ss_pred CCCCCEEEEECC----CHHHHHHHHHHHHCCCCEEEE------------------------ECCCHHHHHHHHHHCCCCC
T ss_conf 814898999996----099999999999759988999------------------------5475789999999849972
Q ss_pred EEEECHHHHHHHHC
Q ss_conf 88833989998611
Q gi|254780336|r 433 LGFLSVDGLYNAIC 446 (488)
Q Consensus 433 l~yls~e~l~~ai~ 446 (488)
+.+.++++|.+.+.
T Consensus 61 ~~~~~~~~l~~~l~ 74 (134)
T pfam01488 61 VEALPLDELEELLA 74 (134)
T ss_pred EEEEECHHHHHHHH
T ss_conf 58985135441363
No 127
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=76.11 E-value=6.1 Score=19.47 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHH
Q ss_conf 56772012001204779999998199600100117653210110644677765320134324553389328974035333
Q gi|254780336|r 291 VIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRG 370 (488)
Q Consensus 291 ~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRG 370 (488)
.++|.++.| -||..+.+|.+-. |-.+.+.=+.|.+..=++.. +++..++.++..+......|++-+|=.+-.+-
T Consensus 177 ~~~d~~l~v-g~G~FH~lg~~i~---~~~~v~~~dP~s~~~~~~~~--~~~~~l~~R~~~i~~a~~a~~~giiv~tk~gQ 250 (347)
T COG1736 177 VDADAVLYV-GSGRFHPLGLAIR---TEKPVFAIDPYSGKVREEDP--EADRFLRKRYAAISKALDAKSFGIIVSTKGGQ 250 (347)
T ss_pred CCCCEEEEE-CCCCCCHHHCCCC---CCCCEEEECCCCCCEEECCH--HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 666459997-2895474021104---67857998687780001452--35679999999999984187699999636656
Q ss_pred H---HHHHHHHHHHHCCC
Q ss_conf 3---38889999985399
Q gi|254780336|r 371 T---TSVKIVQMIRSAGA 385 (488)
Q Consensus 371 t---T~k~iv~~lr~aGa 385 (488)
. +.+.++++++++|-
T Consensus 251 ~r~~~~~~l~k~~~~~g~ 268 (347)
T COG1736 251 RRLEVARELVKLLKEAGK 268 (347)
T ss_pred CCHHHHHHHHHHHHHCCC
T ss_conf 719999999999997598
No 128
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=75.47 E-value=6.3 Score=19.36 Aligned_cols=110 Identities=21% Similarity=0.343 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHH-HHHHCC
Q ss_conf 728999999999999874865677-201200120477999999819960010011765321011064467776-532013
Q gi|254780336|r 271 GRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAF-GVKLKH 348 (488)
Q Consensus 271 g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~-~v~~K~ 348 (488)
|.+++++=+-+.+.. +| +|+=.|+.+.. .-+|+.+.+|.--+- -| ++=-|+|.+=+. -++.++
T Consensus 86 gEsi~DTarvls~y~-------~D~iv~R~~~~~~~--~~~a~~s~vPVINag-----dg-~~eHPtQaLaDl~Ti~e~~ 150 (304)
T PRK00856 86 GETLADTIRTLSAMG-------ADAIVIRHPQSGAA--RLLAEKVNVPVINAG-----DG-SHQHPTQALLDLLTIREEF 150 (304)
T ss_pred CCCHHHHHHHHHHHC-------CCEEEEECCCHHHH--HHHHHHCCCCEEECC-----CC-CCCCCHHHHHHHHHHHHHH
T ss_conf 978999999999727-------97999916865699--999986899889799-----99-7768469998799999863
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
Q ss_conf 4324553389328974035333338889999985399789999658980588656
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFY 403 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~y 403 (488)
. .++|++|++|-|- -.+.|.+..+.++...|. ++.+++||-..|...
T Consensus 151 g----~l~glki~~vGD~-~n~rv~~Sl~~~~~~~g~---~~~~~~P~~~~p~~~ 197 (304)
T PRK00856 151 G----RLEGLKVAIVGDI-KHSRVARSNIQALTRLGA---EVRLIAPPTLLPEGI 197 (304)
T ss_pred C----CCCCCEEEEECCC-CCCHHHHHHHHHHHHCCC---EEEEECCCCCCCHHH
T ss_conf 8----7778769998478-745679999999997698---699977853388444
No 129
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase; InterPro: IPR013445 This entry contains CDP-glucose 4,6-dehydratases from a variety of Gram-negative and Gram-positive bacteria. Members are typically encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate CDP-D-glucose. This is used by the proteins in this entry to produce CDP-4-keto-6-deoxyglucose..
Probab=74.84 E-value=6.5 Score=19.25 Aligned_cols=125 Identities=18% Similarity=0.334 Sum_probs=74.9
Q ss_pred CCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC----CCCCC----------HHHHHHHHHHHCCEE
Q ss_conf 9719999965508789999999864982423430789889898730----25670----------568999986530439
Q gi|254780336|r 108 VGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQ----KNGSC----------DRFIDSLRHVQGAYA 173 (488)
Q Consensus 108 ~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~----~~~~~----------e~i~~~l~~l~Gays 173 (488)
++.+-.-|=|.|.+...|++-+. ...=|+|+||-|+-+ ..+.. -.+.+++|.++..-+
T Consensus 56 ~~Wyf~~~~gDIrD~~~L~~~~~--------~~~PeIvFHlAAQPLVr~SY~~P~~Tf~TNVmGT~~lLea~r~~~~~~a 127 (361)
T TIGR02622 56 DSWYFSSIFGDIRDAAKLEKAIA--------EFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIKSVKA 127 (361)
T ss_pred CCEEEEEEEECCCCHHHHHHHHH--------HCCCCEEEHHHHHHHHHHHHHCHHHHEEEHHHHHHHHHHHHHHCCCCEE
T ss_conf 35055423303232789999999--------7289898333542788986732020222003222577889974699569
Q ss_pred EEEEECCEEE-------EEE--ECCC------------------CCEEEEEECC----CEEEEEECCHHCCCCCC-----
Q ss_conf 9996399799-------998--2566------------------5415998269----56999861200104787-----
Q gi|254780336|r 174 MLALTRTKLI-------ATR--DPIG------------------IRPLIMGELH----GKPIFCSETCALEITGA----- 217 (488)
Q Consensus 174 lv~l~~~~l~-------~~R--Dp~G------------------iRPL~~G~~~----~~~v~ASEs~Al~~ig~----- 217 (488)
+|+.|.||+| ++| |++| .|-=+++..+ ....+||=..- .+||+
T Consensus 128 ~v~vTsDK~Y~N~EW~wgYRE~D~LGGhDPYS~SKAcAELv~~syR~SF~~~~~f~~~h~~~iAsaRAG-NVIGGGDWs~ 206 (361)
T TIGR02622 128 VVLVTSDKVYENKEWVWGYRETDPLGGHDPYSSSKACAELVIASYRSSFFGEANFQSTHGIKIASARAG-NVIGGGDWSE 206 (361)
T ss_pred EEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEC-CCCCCCCCHH
T ss_conf 998616723307878875232478877167753289999999999860688887554686368998606-4047675001
Q ss_pred -----CEEEECCCCEEEEEEECCCCEEEEEEEE
Q ss_conf -----4123317870799940898479987530
Q gi|254780336|r 218 -----KYIRDVENGETIVCELQEDGFISIDSYK 245 (488)
Q Consensus 218 -----~~irdv~PGEiivi~~~~~g~~~i~~~~ 245 (488)
+.||=+.-+++|.|+ |.+ +++-|+
T Consensus 207 DRliPD~irA~~~n~~v~IR-nP~---A~RPWQ 235 (361)
T TIGR02622 207 DRLIPDVIRALSSNKIVTIR-NPD---ATRPWQ 235 (361)
T ss_pred HCCHHHHHHHHHCCCEEEEE-CCC---CCCCCC
T ss_conf 04178999964268737743-778---858974
No 130
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=74.81 E-value=6.5 Score=19.24 Aligned_cols=105 Identities=22% Similarity=0.330 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHH-HHHHCC
Q ss_conf 3728999999999999874865677201200120477999999819960010011765321011064467776-532013
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAF-GVKLKH 348 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~-~v~~K~ 348 (488)
-|.++.+.-+-||+.+-- |++-+. +-..-..+|+.+++|.--||.- .--|+|.+-+. -++.++
T Consensus 85 r~Esi~DTArVLsr~~D~-------I~~R~~--~~~~v~~lA~~s~VPViNgLtD-------~~HP~Q~LADl~Ti~E~~ 148 (310)
T COG0078 85 RGESIKDTARVLSRMVDA-------IMIRGF--SHETLEELAKYSGVPVINGLTD-------EFHPCQALADLMTIKEHF 148 (310)
T ss_pred CCCCHHHHHHHHHHHHHE-------EEEECC--CHHHHHHHHHHCCCCEECCCCC-------CCCCHHHHHHHHHHHHHC
T ss_conf 899678899999855025-------778535--4899999997279966725456-------668189999999999963
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCC
Q ss_conf 432455338932897403533333888999998539978-99996589805886
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE-VHLRVASPMVLYPD 401 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e-vh~ri~sPpi~~pc 401 (488)
.+ ++|++++.|-|- -++..-|-.++|+= .++++++|+=.+|.
T Consensus 149 g~----l~g~k~a~vGDg-------NNv~~Sl~~~~a~~G~dv~ia~P~~~~p~ 191 (310)
T COG0078 149 GS----LKGLKLAYVGDG-------NNVANSLLLAAAKLGMDVRIATPKGYEPD 191 (310)
T ss_pred CC----CCCCEEEEECCC-------CHHHHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 86----668579997676-------36999999999982986899789867869
No 131
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=74.75 E-value=6.6 Score=19.23 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-EEHHEECCCCCCCEEEECCHHHHHHHHH---
Q ss_conf 372899999999999987486567720120012047799999981996-0010011765321011064467776532---
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIP-FEQGIIRNHYVGRTFIEPSHHIRAFGVK--- 345 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip-~~~~lvkn~y~gRtFI~p~~~~R~~~v~--- 345 (488)
.+-++|.+=..--+.|- +..++-.+|-||| |-..||-..-.++-+| ..|.++=.|..|||-..+.+..+..+..
T Consensus 84 GDpsiYgA~~EQm~~L~-~~gI~yevvPGVs-s~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~la~~~aT 161 (254)
T COG2875 84 GDPSIYGALAEQMRELE-ALGIPYEVVPGVS-SFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAALAKHGAT 161 (254)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCCEEEECCCH-HHHHHHHHHCCEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCE
T ss_conf 99068889999999999-7699859937905-999999983854405774106999713468789966589999854862
Q ss_pred --------HCCCCCHHHHCC-----CCEEEE------EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf --------013432455338-----932897------4035333338889999985399789999658980
Q gi|254780336|r 346 --------LKHSANRTILAG-----KRVVLI------DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 346 --------~K~~~~~~~i~g-----k~vvlv------DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
+--..+.+++.| --|.+| |.-|+|| |+..|....+++|-..--+-+-.+-+
T Consensus 162 m~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii~G-TL~dIa~kv~~~~i~rTAlIiVG~~l 231 (254)
T COG2875 162 MVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKIIRG-TLEDIAEKVKEAGIRRTALIIVGDVL 231 (254)
T ss_pred EEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEE-EHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 68652556899999998607899999789999557886107986-59999999986596068999983555
No 132
>pfam08759 DUF1792 Domain of unknown function (DUF1792). This putative domain is probably missannotated as a glycosyl transferase 8 family member. This domain is found at the C-terminus of proteins that also contain the glycosyl transferase domain at the N-terminus.
Probab=73.85 E-value=5.1 Score=20.01 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCC--HH----HHHHHHHH----HCCCCEEHHEECCCCCCCEEEE-CCHHH-HHHHHH
Q ss_conf 9999999987486567720120012--04----77999999----8199600100117653210110-64467-776532
Q gi|254780336|r 278 RRNMGKNLAKESPVIADIVVPIPDG--GV----PAAIGYAK----ESGIPFEQGIIRNHYVGRTFIE-PSHHI-RAFGVK 345 (488)
Q Consensus 278 R~~lG~~La~~~~~~~DiV~~VPds--g~----~aA~gya~----~~gip~~~~lvkn~y~gRtFI~-p~~~~-R~~~v~ 345 (488)
..+|-+.|- .-+...++++||- +. -.|..|-+ .-+--|..-+.+++-.|-|||. |=-.. .+....
T Consensus 27 a~rLkeiL~---~~~~~~lVclpd~f~~l~~~n~~a~~fw~~~~~~~~~~~~k~l~~~~~Y~~tfiSRpY~d~~dKs~~~ 103 (225)
T pfam08759 27 AKRLKEILT---SSDENLLVCLPDVFTNLERYNNDAREFWKTHFFRNGDFIKKLLVPNRWYGSTFISRPYIDYKDKSKSA 103 (225)
T ss_pred HHHHHHHHH---CCCCCEEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEECCCCCCCCCCHHHH
T ss_conf 999999982---79998499668022377886166799999999986899999745677461104233221212225769
Q ss_pred HCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCC
Q ss_conf 01343245533893289740353333388899-99985399789999658980
Q gi|254780336|r 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIV-QMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 346 ~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv-~~lr~aGa~evh~ri~sPpi 397 (488)
.-+..+|.+-+||.|++|. |.++|.=| .-|. .+|++|. ||-||+-
T Consensus 104 ~~F~~lK~iW~~rdIliVE-----G~~sR~GvGNdLF-~naksI~-rIicPsk 149 (225)
T pfam08759 104 RYFHKLKQIWQNRDILIVE-----GEKSRSGVGNDLF-DNAKSIK-RIICPSK 149 (225)
T ss_pred HHHHHHHHHHCCCEEEEEE-----CCCCCCCCCHHHH-HCCCEEE-EEECCCH
T ss_conf 9999999984799089992-----3651146771556-3664078-8957877
No 133
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=73.84 E-value=6.9 Score=19.08 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHH-HHC
Q ss_conf 3728999999999999874865677-20120012047799999981996001001176532101106446777653-201
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV-KLK 347 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v-~~K 347 (488)
-|.+++++=+-++.. .| ||+=.|..+.+ .-+|+.+++|.--|+-. .=-|+|.+=+..- +.+
T Consensus 86 kgEsi~DT~~vls~~--------~D~iv~R~~~~~~~--~~~a~~s~vPViNg~~~-------~~HPtQ~L~D~~Ti~E~ 148 (332)
T PRK04284 86 KKETTKDTARVLGGM--------YDGIEYRGFSQRTV--ETLAEYSGVPVWNGLTD-------EDHPTQVLADFLTAKEV 148 (332)
T ss_pred CCCCHHHHHHHHHHH--------CCEEEEECCCHHHH--HHHHHHCCCCEEECCCC-------CCCCHHHHHHHHHHHHH
T ss_conf 877899999999962--------88899953461899--99998679998868998-------77726899888999997
Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 34324553389328974035333338889999985399789999658980588
Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
+ +..++|++|.+|-| .|.++....+.++...|+ ++.+++|+=..|
T Consensus 149 ~---~~~~~~lkva~vGD--~~nnVa~S~~~~~~~~g~---~~~~~~P~~~~p 193 (332)
T PRK04284 149 L---KKPYADINFTYVGD--GRNNVANALMQGAAIMGM---NFHLVCPKELNP 193 (332)
T ss_pred H---CCCCCCCEEEEECC--CCCCHHHHHHHHHHHCCC---CEEEECCCCCCC
T ss_conf 1---36656728999679--886511579999997599---379975855588
No 134
>PRK07883 hypothetical protein; Validated
Probab=70.75 E-value=5.7 Score=19.67 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=27.6
Q ss_pred ECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCC--CCCHHHHHH
Q ss_conf 4699719999965508789999999864982423--430789889
Q gi|254780336|r 105 DLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQS--TSDTEVILH 147 (488)
Q Consensus 105 ~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s--~sDTEvI~~ 147 (488)
+...+.+-++||-.. .+.-|+.++...|..+-. .-||--++.
T Consensus 100 ~F~~~~vlVAHNa~F-D~~FL~~~~~r~g~~~~~~~~ldTl~LAR 143 (575)
T PRK07883 100 EFARGSVLVAHNAPF-DIGFLRAAAERCGYPWPQPEVLCTVRLAR 143 (575)
T ss_pred HHHCCCEEEEECCHH-HHHHHHHHHHHCCCCCCCCCEEEHHHHHH
T ss_conf 996899899908345-29999999997599987897864899999
No 135
>pfam05014 Nuc_deoxyrib_tr Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyses the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.
Probab=70.17 E-value=3 Score=21.69 Aligned_cols=29 Identities=41% Similarity=0.588 Sum_probs=23.6
Q ss_pred CCCCCCC-----CCCCHHHHHHHHHHHCCCCEEH
Q ss_conf 6772012-----0012047799999981996001
Q gi|254780336|r 292 IADIVVP-----IPDGGVPAAIGYAKESGIPFEQ 320 (488)
Q Consensus 292 ~~DiV~~-----VPdsg~~aA~gya~~~gip~~~ 320 (488)
++|+|+. .||+|...-+|||.++|+|.--
T Consensus 60 ~~D~vva~ld~~~~D~GT~~EiG~A~algKpvi~ 93 (112)
T pfam05014 60 QADAVVANLDGFRPDSGTAFELGYAYALGKPVIA 93 (112)
T ss_pred HCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 7999999907988996489999999987995999
No 136
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=68.43 E-value=9 Score=18.27 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=9.3
Q ss_pred HHHHHHCCCCCEEEEEEEE
Q ss_conf 9987731588702799997
Q gi|254780336|r 33 GLHALQHRGQEATGIISFN 51 (488)
Q Consensus 33 gL~~LQHRGqdsaGIa~~d 51 (488)
..++|+.+|.+. +.+++
T Consensus 23 aa~~L~~~g~~~--~~i~E 39 (443)
T COG2072 23 AAYALKQAGVPD--FVIFE 39 (443)
T ss_pred HHHHHHHCCCCC--EEEEE
T ss_conf 999999759986--79997
No 137
>pfam08973 DUF1893 Domain of unknown function (DUF1893). This domain is found in a set of hypothetical bacterial proteins. The structure of this protein has recently been solved showing it to belong to the cytidine deaminase superfamily. It has also recently been found that this protein is ADP-ribosylated.
Probab=67.78 E-value=2.8 Score=21.83 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=15.6
Q ss_pred HCCEEEEEEECCEEEEEEECCCCCEEE
Q ss_conf 304399996399799998256654159
Q gi|254780336|r 169 QGAYAMLALTRTKLIATRDPIGIRPLI 195 (488)
Q Consensus 169 ~Gayslv~l~~~~l~~~RDp~GiRPL~ 195 (488)
.|.||++++.++.++.+.| .|++||+
T Consensus 10 e~~~S~Vi~k~~~i~ts~~-rGv~pL~ 35 (134)
T pfam08973 10 EGGYSLVIYKDGKIRTSTQ-RGVAPLY 35 (134)
T ss_pred HCCEEEEEEECCEEEEECC-CCHHHHH
T ss_conf 4893699972986886457-5738999
No 138
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=67.12 E-value=9.5 Score=18.09 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=34.9
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 38932897403533333888999998539978999965898058865
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDF 402 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~ 402 (488)
+|++|.+|-|-. +++|.+..+.++...|+ ++.+++|+--.|..
T Consensus 1 ~g~~i~~vGD~~-~~rv~~S~~~~~~~~g~---~v~i~~P~~~~~~~ 43 (155)
T pfam00185 1 DGLKVAIVGDGK-HNRVAHSLILALAKFGM---EVVLVAPKGLPPDP 43 (155)
T ss_pred CCCEEEEECCCC-CCHHHHHHHHHHHHCCC---EEEEECCCCCCCCH
T ss_conf 998999983787-27499999999998499---89998785238888
No 139
>PRK13566 anthranilate synthase; Provisional
Probab=66.88 E-value=9.5 Score=18.09 Aligned_cols=37 Identities=35% Similarity=0.588 Sum_probs=30.6
Q ss_pred HHCCCCEEEEE--HHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 53389328974--0353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLID--DSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvD--DSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
.-.||||+||| ||-|- .+++.||+.||.=..+|-..|
T Consensus 520 ~~~g~rVLlVDn~DSFvh-----tLa~YlrqlGAeV~vvR~d~~ 558 (724)
T PRK13566 520 VGSGKRVLLVDHEDSFVH-----TLANYFRQTGAEVTTVRYPVA 558 (724)
T ss_pred CCCCCEEEEEECCCHHHH-----HHHHHHHHHCCEEEEEECCCC
T ss_conf 787757999846532799-----999999981987999818987
No 140
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=65.24 E-value=10 Score=17.84 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=56.4
Q ss_pred HCCCCEEHHEECCCCCCCEEEECCHHHHH-HHHHHCCCCCHHHHCCCCEEEEEH---HHHHHH-HHHHHHHHHHHCCCCE
Q ss_conf 81996001001176532101106446777-653201343245533893289740---353333-3888999998539978
Q gi|254780336|r 313 ESGIPFEQGIIRNHYVGRTFIEPSHHIRA-FGVKLKHSANRTILAGKRVVLIDD---SIVRGT-TSVKIVQMIRSAGASE 387 (488)
Q Consensus 313 ~~gip~~~~lvkn~y~gRtFI~p~~~~R~-~~v~~K~~~~~~~i~gk~vvlvDD---SIVRGt-T~k~iv~~lr~aGa~e 387 (488)
.+.+|.--++-. . + -|+|.+=+ .-++.++..++ .++|++|.++-| +.-|++ ..+.++.++...|+
T Consensus 133 ~s~vPVINal~d-----~-~-HPtQaLaDl~Ti~e~~G~~~-~l~g~~v~i~~~~~~~~g~~~~Va~Sl~~~~~~~g~-- 202 (357)
T TIGR03316 133 EQRPPLVNLQCD-----I-D-HPTQAMADIMTLQEKFGGIE-NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGM-- 202 (357)
T ss_pred CCCCCEEECCCC-----C-C-CCHHHHHHHHHHHHHHCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCC--
T ss_conf 368987837888-----7-7-83699999999999848722-467774899986125565153799999999997598--
Q ss_pred EEEEECCCCCCCCCCCCE
Q ss_conf 999965898058865650
Q gi|254780336|r 388 VHLRVASPMVLYPDFYGI 405 (488)
Q Consensus 388 vh~ri~sPpi~~pc~yGi 405 (488)
+|+++|||=-.|+..-+
T Consensus 203 -~v~~~~P~~~~~~~~~~ 219 (357)
T TIGR03316 203 -DVTLAHPEGYHLLPEVI 219 (357)
T ss_pred -EEEEECCCCCCCCHHHH
T ss_conf -09997784236787999
No 141
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=62.26 E-value=12 Score=17.47 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=28.3
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 3389328974035333338889999985399789999658
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
+++|+|+++-- |=+.|.++.-|.+.|+++||+.--+
T Consensus 17 ~~~k~vlIlGa----GGaarai~~aL~~~g~~~I~i~nR~ 52 (155)
T cd01065 17 LKGKKVLILGA----GGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECC----CHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 57999999867----5899999999997199822886089
No 142
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=62.06 E-value=5.8 Score=19.64 Aligned_cols=18 Identities=28% Similarity=0.785 Sum_probs=9.2
Q ss_pred CCCCEEEEEEECCCCEEEEE
Q ss_conf 17870799940898479987
Q gi|254780336|r 223 VENGETIVCELQEDGFISID 242 (488)
Q Consensus 223 v~PGEiivi~~~~~g~~~i~ 242 (488)
|.|||-| .....|+.++.
T Consensus 156 ip~g~~v--pFraGGyiQie 173 (410)
T COG2871 156 IPEGEEV--PFRAGGYIQIE 173 (410)
T ss_pred CCCCCCC--CCCCCCEEEEE
T ss_conf 7999836--64788669995
No 143
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.52 E-value=12 Score=17.26 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=12.9
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 0024743000372899999999999987486
Q gi|254780336|r 260 VYFARPDSIISGRSIYVSRRNMGKNLAKESP 290 (488)
Q Consensus 260 IYFarpdS~~~g~~Vy~~R~~lG~~La~~~~ 290 (488)
|||.+| .|.-.+-|..|+.--.+.|++..
T Consensus 32 ~yFYNP--NIhP~~EY~~R~~e~~~f~~~~~ 60 (204)
T COG1636 32 IYFYNP--NIHPLSEYELRKEEVKRFAEKFG 60 (204)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 997489--98926999999999999999829
No 144
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=60.42 E-value=9.2 Score=18.18 Aligned_cols=71 Identities=25% Similarity=0.321 Sum_probs=35.2
Q ss_pred CCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCC
Q ss_conf 74123317870799940898479987530776566420000010024743000372----89999999999998748656
Q gi|254780336|r 217 AKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGR----SIYVSRRNMGKNLAKESPVI 292 (488)
Q Consensus 217 ~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~----~Vy~~R~~lG~~La~~~~~~ 292 (488)
-+||-.=.+++|+.|+ |-+ |||| ..-.|.|+=+ .-.++-..|=..|=+ |
T Consensus 148 IDyIN~~~~~HIiTIE---DPI-------------------Eyvh-~~~~sli~QREvG~DT~sF~~ALraALRe----D 200 (350)
T TIGR01420 148 IDYINKNKAGHIITIE---DPI-------------------EYVH-KNKRSLINQREVGLDTLSFANALRAALRE----D 200 (350)
T ss_pred HHHHHCCCCCCCEEEE---CCE-------------------EEEE-CCCEEEEECCCCCCCHHHHHHHHHHHHCC----C
T ss_conf 9787403888825631---773-------------------1410-47702454362467545799997684102----8
Q ss_pred CC-CCCC-CCCCHHHH-HHHHHHHC
Q ss_conf 77-2012-00120477-99999981
Q gi|254780336|r 293 AD-IVVP-IPDGGVPA-AIGYAKES 314 (488)
Q Consensus 293 ~D-iV~~-VPdsg~~a-A~gya~~~ 314 (488)
+| |+|| .=|.-++. |+--|+.=
T Consensus 201 PDvILiGE~RD~ET~~~AL~AAETG 225 (350)
T TIGR01420 201 PDVILIGEMRDLETVELALTAAETG 225 (350)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 9889982556278999999874213
No 145
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=59.00 E-value=11 Score=17.66 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=28.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 53389328974035333338889999985399789999
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
.-+++.||++..| |..+....+.|+++|-+.|+.-
T Consensus 47 ~~~~~~iv~~C~~---g~rs~~aa~~L~~~G~~~v~~l 81 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNL 81 (89)
T ss_pred CCCCCCEEEECCC---CCCCHHHHHHHHHCCCCCEEEE
T ss_conf 2689877877598---9812789999998089887990
No 146
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=58.54 E-value=11 Score=17.54 Aligned_cols=119 Identities=22% Similarity=0.218 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHC----------CCCCCCCCCCCCCHHHHHHHHHH---HCCC--CEEHHEECCCCCCCEEEECC
Q ss_conf 289999999999998748----------65677201200120477999999---8199--60010011765321011064
Q gi|254780336|r 272 RSIYVSRRNMGKNLAKES----------PVIADIVVPIPDGGVPAAIGYAK---ESGI--PFEQGIIRNHYVGRTFIEPS 336 (488)
Q Consensus 272 ~~Vy~~R~~lG~~La~~~----------~~~~DiV~~VPdsg~~aA~gya~---~~gi--p~~~~lvkn~y~gRtFI~p~ 336 (488)
+|-|=||+-|--.==|.. ++-.||||---|.|..=++-... ..+- ..-+-| |.|=+||+-+.
T Consensus 909 iStHGARKGLADTALKTADSGYLTRRLVDv~QdVvv~e~DCGT~~Gi~v~ai~~g~~~el~~IesL-~DR~vGR~~~e-- 985 (1552)
T TIGR02386 909 ISTHGARKGLADTALKTADSGYLTRRLVDVAQDVVVREEDCGTEEGIEVEAIVEGKDDELEVIESL-KDRIVGRYSAE-- 985 (1552)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECC-CCEEEEEEEEE--
T ss_conf 011120011478998742656552100125444888716878847778999984788648898604-21167328987--
Q ss_pred HHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHCCCCEEEEEEC--CCCCCCCC--CCCEECCCHH
Q ss_conf 467776532013432455338932897403533333-888999998539978999965--89805886--5650058978
Q gi|254780336|r 337 HHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT-SVKIVQMIRSAGASEVHLRVA--SPMVLYPD--FYGIDIPDPT 411 (488)
Q Consensus 337 ~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT-~k~iv~~lr~aGa~evh~ri~--sPpi~~pc--~yGid~p~~~ 411 (488)
.+.+-.+|+-|+ =|+|- .+.+++.+-++|-++|-|||+ |--=.-=| |||+|+++-.
T Consensus 986 -------------dv~~P~~g~~~~------~~N~lI~~~~a~~i~~~Gi~~v~iRS~LTC~~~~GVC~kCYG~dLat~~ 1046 (1552)
T TIGR02386 986 -------------DVVDPETGKLVA------KANTLITEEIAEKIENLGIEKVKIRSVLTCESKHGVCQKCYGRDLATGK 1046 (1552)
T ss_pred -------------EEECCCCCEEEE------ECCCCCCHHHHHHHHHCCCCEEEECCCEEECCCCCCEEECCCCCCCCCC
T ss_conf -------------531288772887------1577311799999985796689963421406898823100121000485
Q ss_pred H
Q ss_conf 8
Q gi|254780336|r 412 A 412 (488)
Q Consensus 412 e 412 (488)
.
T Consensus 1047 ~ 1047 (1552)
T TIGR02386 1047 L 1047 (1552)
T ss_pred C
T ss_conf 2
No 147
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=57.70 E-value=11 Score=17.77 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=14.2
Q ss_pred CCEEEEEECCCCHH---HHHHHHHHHHH
Q ss_conf 56599998185336---89999998773
Q gi|254780336|r 14 KCGVFGILGHPDAA---TLTAIGLHALQ 38 (488)
Q Consensus 14 eCGI~Gi~~~~~~~---~~~~~gL~~LQ 38 (488)
-.=|+|+-+.+|.. .+++.+|..|.
T Consensus 14 ~PWvIGySGGKDSTavLqLvw~Al~~Lp 41 (447)
T TIGR03183 14 IPWVIGYSGGKDSTAVLQLVWNALSELP 41 (447)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9879975877399999999999998478
No 148
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=57.19 E-value=8.6 Score=18.40 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 368999999877
Q gi|254780336|r 26 AATLTAIGLHAL 37 (488)
Q Consensus 26 ~~~~~~~gL~~L 37 (488)
+...+-..|..+
T Consensus 26 c~~~L~~lL~~i 37 (218)
T PRK09968 26 CYQLLQSRLHQL 37 (218)
T ss_pred CHHHHHHHHHHC
T ss_conf 989999999964
No 149
>pfam07368 DUF1487 Protein of unknown function (DUF1487). This family consists of several uncharacterized proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=57.02 E-value=14 Score=16.86 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHH---HHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 799999981996001001176532101106446777653---20134324553389328974035333338889999985
Q gi|254780336|r 306 AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV---KLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRS 382 (488)
Q Consensus 306 aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v---~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~ 382 (488)
|..+..+.+.-||.++.| .+-|++ +..|+.-+ +.++-|+...+.. .....+.++++.+
T Consensus 19 A~~~Lv~sl~~PF~~~~V-----atvlVq--Esireefi~rv~~rm~pL~~~v~~------------Hpny~rsl~~i~~ 79 (215)
T pfam07368 19 ALHALVESLHNPFAPGAV-----ATVLVQ--ESIRDEFVERVRSRLKPLSERVAN------------HPSYLKTLEKIDE 79 (215)
T ss_pred HHHHHHHHHHHHCCCCCE-----EEEEEH--HHHHHHHHHHHHHHCCCCCCCCCC------------CCHHHHHHHHHHH
T ss_conf 999999998623047836-----777650--688999999999855308823043------------9069999999863
Q ss_pred CCCCEEEEE------ECCCCCCCCC---CCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 399789999------6589805886---565005897888546699988999870997788833
Q gi|254780336|r 383 AGASEVHLR------VASPMVLYPD---FYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLS 437 (488)
Q Consensus 383 aGa~evh~r------i~sPpi~~pc---~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls 437 (488)
.+++-|+.. -+||-+..-| |+| |-||. =.-.+-+++.+|..+..+-+++.|-|
T Consensus 80 l~~~~i~~~~~~~~~~~SPilV~d~~h~~~g-~~Ptg-VvTlhTFRt~~Ea~~l~~~e~~~f~s 141 (215)
T pfam07368 80 LNAKTIHGKSEGRPADASPILVCDFPHSFLG-GGPTG-VVTLHTFRNMKEAVQLHAKEPLPFDS 141 (215)
T ss_pred CCCEEEEECCCCCCCCCCCEEEECCCCHHHC-CCCCE-EEEEECCCCHHHHHHHHHCCCCCCEE
T ss_conf 3966999455678889999899688704327-99962-59986159989999998468998605
No 150
>PRK06850 hypothetical protein; Provisional
Probab=54.86 E-value=15 Score=16.75 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=14.7
Q ss_pred CCEEEEEECCCCHH---HHHHHHHHHH
Q ss_conf 56599998185336---8999999877
Q gi|254780336|r 14 KCGVFGILGHPDAA---TLTAIGLHAL 37 (488)
Q Consensus 14 eCGI~Gi~~~~~~~---~~~~~gL~~L 37 (488)
-.=|+|+-+.+|.. .+++.+|..|
T Consensus 22 rPWvIGySGGKDSTavLqLvw~Al~~L 48 (488)
T PRK06850 22 RPWVIGYSGGKDSTAVLQLVWNALAGL 48 (488)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 987997587719999999999999837
No 151
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=54.08 E-value=16 Score=16.54 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC------------CEEEEC--CH-----HHHHHHHHHCCCCCHHHHC
Q ss_conf 0120012047799999981996001001176532------------101106--44-----6777653201343245533
Q gi|254780336|r 296 VVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG------------RTFIEP--SH-----HIRAFGVKLKHSANRTILA 356 (488)
Q Consensus 296 V~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g------------RtFI~p--~~-----~~R~~~v~~K~~~~~~~i~ 356 (488)
|+--+.|+...|..+-+.-|+||-+. -++| +-|=.+ .+ +++...++-.+.+.++.++
T Consensus 224 vv~C~~~~~~~A~~le~~yGiP~~~~----~f~Gi~~T~~~Lr~IA~~fG~el~~~~E~lI~~e~~~~~~~l~~yr~~L~ 299 (421)
T cd01976 224 LIHCYRSMNYIARMMEEKYGIPWMEY----NFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRLE 299 (421)
T ss_pred EEECHHHHHHHHHHHHHHHCCCEEEE----CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88535799999999999869896951----56587999999999999859088899999999999999999999998708
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8932897403533333888999998539978999
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
||||+|.= =|.-+..++.+|++.|-+=|-.
T Consensus 300 GKrv~i~~----Gg~~~~~~i~~~~eLGmevV~~ 329 (421)
T cd01976 300 GKTVMLYV----GGLRPRHYIGAYEDLGMEVVGT 329 (421)
T ss_pred CCEEEEEC----CCCCHHHHHHHHHHCCCEEEEE
T ss_conf 98899989----9874689999999879889997
No 152
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=53.03 E-value=13 Score=17.00 Aligned_cols=26 Identities=12% Similarity=0.085 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 02474300037289999999999998
Q gi|254780336|r 261 YFARPDSIISGRSIYVSRRNMGKNLA 286 (488)
Q Consensus 261 YFarpdS~~~g~~Vy~~R~~lG~~La 286 (488)
|+++..+.+.+.--.++-+-+.+.|.
T Consensus 203 y~s~~~~p~sd~~a~~ai~li~~~L~ 228 (381)
T PRK10624 203 YITRGAWALTDALHIKAIEIIAGALR 228 (381)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 86479877789999999999999999
No 153
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=52.67 E-value=16 Score=16.39 Aligned_cols=92 Identities=18% Similarity=0.295 Sum_probs=50.0
Q ss_pred HHHHHHHHHCC-CCCHHHHCCCCEEEE--------EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECC
Q ss_conf 67776532013-432455338932897--------403533333888999998539978999965898058865650058
Q gi|254780336|r 338 HIRAFGVKLKH-SANRTILAGKRVVLI--------DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIP 408 (488)
Q Consensus 338 ~~R~~~v~~K~-~~~~~~i~gk~vvlv--------DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p 408 (488)
+.|...+-.|+ +... ++||+|-+- || +|..-+..++++|.+.||+ |++--|-.....+.+.-
T Consensus 292 ~~qk~~~~~~i~~~~~--l~Gk~iavlgLafKpnTDD--~ReSpa~~vi~~L~~~Ga~---V~aYDP~a~~~~~~~~~-- 362 (414)
T COG1004 292 ERRKDKLAEKILNHLG--LKGKTIAVLGLAFKPNTDD--MRESPALDIIKRLQEKGAE---VIAYDPVAMENAFRNFP-- 362 (414)
T ss_pred HHHHHHHHHHHHHHCC--CCCCEEEEEEEEECCCCCC--CCCCHHHHHHHHHHHCCCE---EEEECCHHHHHHHHCCC--
T ss_conf 8889999999998468--7786799998741699842--0003179999999977998---99978254377773078--
Q ss_pred CHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHH
Q ss_conf 9788854669998899987099778883398999861
Q gi|254780336|r 409 DPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAI 445 (488)
Q Consensus 409 ~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai 445 (488)
++-.. .+.+|. .-+||-|.-.+-.+-.+.+
T Consensus 363 ---~~~~~--~~~~~~--~~~aDaivi~tew~ef~~~ 392 (414)
T COG1004 363 ---DVELE--SDAEEA--LKGADAIVINTEWDEFRDL 392 (414)
T ss_pred ---CCEEE--CCHHHH--HHHCCEEEEECCHHHHHCC
T ss_conf ---71674--899999--8409899995557987555
No 154
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=52.66 E-value=16 Score=16.39 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHH-HHCC
Q ss_conf 372899999999999987486567720120012047799999981996001001176532101106446777653-2013
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV-KLKH 348 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v-~~K~ 348 (488)
-|.+++++=+-|++. .++ ||+=.++.+. ...+|+.+++|.--|+-- .+ -|+|.+=+..- +.++
T Consensus 87 kgEsl~Dta~vls~~----~D~---iv~R~~~~~~--~~~~a~~~~vPVINg~~~------~~-HPtQ~LaDl~Ti~E~~ 150 (334)
T PRK01713 87 HKESMKDTARVLGRM----YDA---IEYRGFKQSI--VNELAKYAGVPVFNGLTD------EF-HPTQMLADVLTMIEHC 150 (334)
T ss_pred CCCCHHHHHHHHHHH----CCE---EEEECCCHHH--HHHHHHHCCCCEEECCCC------CC-CHHHHHHHHHHHHHHH
T ss_conf 998999999999962----858---9995467289--999998659988938978------77-7589998899999984
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 4324553389328974035333338889999985399789999658980588
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
..-++|++|+.|-|. +.+..+..+.++...|+ +|++++|+-..|
T Consensus 151 ---~~~l~gl~ia~vGD~--~nnv~~S~~~~~~~lG~---~v~i~~P~~~~p 194 (334)
T PRK01713 151 ---EKPLSEISYVYIGDA--RNNMGNSLLLIGAKLGM---DVRICAPKALLP 194 (334)
T ss_pred ---CCCCCCEEEEEECCC--CCCHHHHHHHHHHHCCC---EEEEECCCCCCC
T ss_conf ---165467499993897--54188999999997799---799988976587
No 155
>pfam00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases. This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.
Probab=52.38 E-value=17 Score=16.36 Aligned_cols=81 Identities=17% Similarity=0.331 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHH
Q ss_conf 86567720120012047799999981996001001176532101106446777653201343245533893289740353
Q gi|254780336|r 289 SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIV 368 (488)
Q Consensus 289 ~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIV 368 (488)
..++..+|- |+.+...-+..+|+|+..+.+. +|+.+....+..... ...-.+..+++..+.
T Consensus 98 ~~i~v~iiP-----GiSs~~~a~a~~g~~l~~~~~~------~~~~~~~~~~~~~~~------~~~~~~~~iv~~~~~-- 158 (200)
T pfam00590 98 EGIEVEVIP-----GISSLQAAAARLGIPLTDGGVV------SLHGRDLDTLRARLL------EALLEGDTLVLLTDP-- 158 (200)
T ss_pred CCCCCEEEC-----CHHHHHHHHHHCCCCCCCCEEE------EEECCCCCCHHHHHH------HHHCCCCEEEEEECC--
T ss_conf 399948980-----7739999999809997657289------982899863408999------970479979999276--
Q ss_pred HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3333888999998539978999
Q gi|254780336|r 369 RGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 369 RGtT~k~iv~~lr~aGa~evh~ 390 (488)
.+...+++.|.+.|..+..+
T Consensus 159 --~~~~~i~~~L~~~g~~~~~v 178 (200)
T pfam00590 159 --HRLAEIAKLLLEAGLDDTPV 178 (200)
T ss_pred --CHHHHHHHHHHHCCCCCCEE
T ss_conf --23999999998559999699
No 156
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=52.22 E-value=17 Score=16.34 Aligned_cols=35 Identities=23% Similarity=0.099 Sum_probs=29.1
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 33893289740353333388899999853997899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
-+++.||++.+| |+.+....+.|+++|-+.|+..-
T Consensus 54 ~~~~~ivv~C~~---G~Rs~~Aa~~L~~~G~~~V~~L~ 88 (96)
T cd01529 54 GRATRYVLTCDG---SLLARFAAQELLALGGKPVALLD 88 (96)
T ss_pred CCCCEEEEECCC---CCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 999979998699---84699999999985898809905
No 157
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=51.93 E-value=17 Score=16.31 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=67.8
Q ss_pred CEEEECC-HHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCCC----CCC
Q ss_conf 1011064-46777653201343245533893289740353333-38889999985399789999658980588----656
Q gi|254780336|r 330 RTFIEPS-HHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT-TSVKIVQMIRSAGASEVHLRVASPMVLYP----DFY 403 (488)
Q Consensus 330 RtFI~p~-~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt-T~k~iv~~lr~aGa~evh~ri~sPpi~~p----c~y 403 (488)
=||--.. ...| .+|.-|-|.-.-++.+.-|.+----=|-|. |.-.|.+.|+.-|+++|.|.+--|. +|+ -.-
T Consensus 523 GTy~HSG~LAIR-aAVAag~nITYKILyNdAVAMTGGQ~~dG~ltv~~i~~ql~aEGV~~ivvvsddp~-~y~~~~~~p~ 600 (1186)
T PRK13029 523 GTYFHSGLLAIR-QAIAAGVNITYKILYNDAVAMTGGQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPG-KYRGVARLPA 600 (1186)
T ss_pred CCCCCCHHHHHH-HHHHCCCCCEEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHH-HCCCCCCCCC
T ss_conf 621104079999-99866997069999667043037877899889999999999679846999916856-5255345898
Q ss_pred CEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 5005897888546699988999870997788833
Q gi|254780336|r 404 GIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLS 437 (488)
Q Consensus 404 Gid~p~~~eLia~~~~~~eei~~~igadsl~yls 437 (488)
|+.+-.|++|.+.+ +|+++.-|++-|.|--
T Consensus 601 gv~v~hRd~L~~vQ----reLr~~~GVtvlIydQ 630 (1186)
T PRK13029 601 GVTVHHRDELDAVQ----RELREVPGVSVLIYDQ 630 (1186)
T ss_pred CCEEECHHHHHHHH----HHHHHCCCCEEEEEHH
T ss_conf 88455277679999----9997368937999610
No 158
>COG1679 Predicted aconitase [General function prediction only]
Probab=51.80 E-value=10 Score=17.79 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=7.7
Q ss_pred EEECCHHC----CCCCCCEEEE
Q ss_conf 98612001----0478741233
Q gi|254780336|r 205 FCSETCAL----EITGAKYIRD 222 (488)
Q Consensus 205 ~ASEs~Al----~~ig~~~ird 222 (488)
.=+||.|. ..+|+.--|+
T Consensus 138 AWaESsAV~fANSVlGArTnRe 159 (403)
T COG1679 138 AWAESSAVSFANSVLGARTNRE 159 (403)
T ss_pred EEECCCHHHHHHHHHHHHCCCC
T ss_conf 3420111222223210100566
No 159
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=51.80 E-value=17 Score=16.29 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=6.0
Q ss_pred CCCCEEEEEEEC
Q ss_conf 178707999408
Q gi|254780336|r 223 VENGETIVCELQ 234 (488)
Q Consensus 223 v~PGEiivi~~~ 234 (488)
|.-|.++.|+.+
T Consensus 187 V~~GDVI~Id~e 198 (450)
T COG1224 187 VEEGDVIYIDAE 198 (450)
T ss_pred CCCCCEEEEECC
T ss_conf 445878999825
No 160
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=50.41 E-value=3.5 Score=21.17 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=29.5
Q ss_pred CCCCCEE---CCCHHHHH-HCCCCCHHHHHHHHCCC-EEEEECHHHHHHH
Q ss_conf 8656500---58978885-46699988999870997-7888339899986
Q gi|254780336|r 400 PDFYGID---IPDPTALL-ANKCSSPQEMCNFIGVD-SLGFLSVDGLYNA 444 (488)
Q Consensus 400 pc~yGid---~p~~~eLi-a~~~~~~eei~~~igad-sl~yls~e~l~~a 444 (488)
-|+||+- +---..|+ .+.-.+++||++.++-| |-.|-++..|.++
T Consensus 20 ~c~~GLs~~Dv~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~ 69 (126)
T COG3355 20 KCVYGLSELDVEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEA 69 (126)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99938968899999999864699579999999783199999999999985
No 161
>PTZ00123 phosphoglycerate mutase I; Provisional
Probab=50.09 E-value=15 Score=16.69 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEH-HEECCCCCCCEEEECCHHHHHHHHHHC
Q ss_conf 0372899999999999987486567720120012047799999981996001-001176532101106446777653201
Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQ-GIIRNHYVGRTFIEPSHHIRAFGVKLK 347 (488)
Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~-~lvkn~y~gRtFI~p~~~~R~~~v~~K 347 (488)
+.|.+-.+++.+.|+.-.....-.-|+.=|--+..-+ +.. .-.+.+.+.+.++..+..+++-..|.+
T Consensus 80 L~GlnK~e~~~k~G~eqv~~WRRsyd~~PP~~~~~~~------------~~~~~d~~y~~~~~~~lP~gESLkd~~~Rv~ 147 (235)
T PTZ00123 80 LQGLNKSETAKKYGEEQVKIWRRSYDIPPPPLEKSDE------------RYPGNDPVYADVPKDALPNTESLKDTVERVL 147 (235)
T ss_pred HHCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC------------CCCCCCHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 4235429999975999999998606789986776674------------4632284332698334888662999999978
Q ss_pred C----CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 3----4324553389328974035333338889999985399789
Q gi|254780336|r 348 H----SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 (488)
Q Consensus 348 ~----~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ev 388 (488)
= ...+.+-+||+|++| --|+++|.+|+.|...-..+|
T Consensus 148 p~~~~~I~p~l~~gk~VLIV----aHGNsLRaLvk~L~~isd~~I 188 (235)
T PTZ00123 148 PYWEDHIAPDIKAGKPVLVA----AHGNSLRALVKYLDNMSEADI 188 (235)
T ss_pred HHHHHHHHHHHHCCCCEEEE----EECHHHHHHHHHHHCCCHHHH
T ss_conf 88999979998347958999----737579999999848999997
No 162
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=49.70 E-value=8.1 Score=18.58 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHCCEEEEEEE------CC---EEEEEEECCCCCEEEEEECC--CEEE
Q ss_conf 7056899998653043999963------99---79999825665415998269--5699
Q gi|254780336|r 157 SCDRFIDSLRHVQGAYAMLALT------RT---KLIATRDPIGIRPLIMGELH--GKPI 204 (488)
Q Consensus 157 ~~e~i~~~l~~l~Gayslv~l~------~~---~l~~~RDp~GiRPL~~G~~~--~~~v 204 (488)
..+.+.+.-+.+.|+.-=+.+. ++ +.|++=|.. |-+|++.. +.|.
T Consensus 147 ~~~~llEh~e~~~~~~~~~~y~QEfi~KPgRDIR~fViGd~~---~~AIYR~~~P~~W~ 202 (289)
T TIGR02144 147 ELESLLEHKEVLGGSQLKLYYVQEFINKPGRDIRVFVIGDEA---IAAIYRYSEPNHWR 202 (289)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECCCC---EEEEEECCCCCCHH
T ss_conf 988999999986797633379998871889608999997973---16788338853025
No 163
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=49.66 E-value=18 Score=16.07 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=11.8
Q ss_pred EEHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 00100247430003728999999999999
Q gi|254780336|r 257 FEYVYFARPDSIISGRSIYVSRRNMGKNL 285 (488)
Q Consensus 257 FEyIYFarpdS~~~g~~Vy~~R~~lG~~L 285 (488)
+|- |+++..+.+-+.--.++=+.+.+.|
T Consensus 200 iE~-y~s~~~~p~sd~~a~~ai~~i~~~l 227 (383)
T PRK09860 200 IEA-YVSIAATPITDACALKAVTMIAENL 227 (383)
T ss_pred HHH-HHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 887-8388888477999999999999999
No 164
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=49.64 E-value=10 Score=17.92 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEH
Q ss_conf 20012047799999981996001
Q gi|254780336|r 298 PIPDGGVPAAIGYAKESGIPFEQ 320 (488)
Q Consensus 298 ~VPdsg~~aA~gya~~~gip~~~ 320 (488)
+-||||+.+-+||+-++|+|.--
T Consensus 81 ~~~DsGTa~E~GYa~AlgKPv~~ 103 (172)
T COG3613 81 PDPDSGTAFELGYAIALGKPVYA 103 (172)
T ss_pred CCCCCCCHHHHHHHHHCCCCEEE
T ss_conf 78998523888899973896478
No 165
>pfam01696 Adeno_E1B_55K Adenovirus EB1 55K protein / large t-antigen. This family consists of adenovirus E1B 55K protein or large t-antigen. E1B 55K binds p53 the tumour suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein. The E1B region of adenovirus encodes two proteins E1B 55K the large t-antigen as found in this family and E1B 19K pfam01691 the small t-antigen which is not found in this family; both of these proteins inhibit E1A induced apoptosis.
Probab=48.99 E-value=19 Score=16.00 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEE--EEECCHHCCCCCCCEEEECCCC
Q ss_conf 705689999865304399996399799998256654159982695699--9861200104787412331787
Q gi|254780336|r 157 SCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPI--FCSETCALEITGAKYIRDVENG 226 (488)
Q Consensus 157 ~~e~i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v--~ASEs~Al~~ig~~~irdv~PG 226 (488)
..|.+..+++ .||=+.|.++..|.+|.|.-||-+||-.-++..+ -.++..||... -++.-||
T Consensus 54 P~dDle~~I~----~hAKIaL~P~~~Y~I~~~v~I~~~CYIiGnGA~v~i~~~~~~af~v~----~~~~~Pg 117 (387)
T pfam01696 54 PGDDLEEAIR----QHAKVALRPDKEYVIRKPVNIRSCCYIIGNGAVVKIDTPDGVAFRVY----MQSMGPG 117 (387)
T ss_pred CCCCHHHHHH----HHCEEEECCCCEEEEECCEEEEEEEEEECCCEEEEEECCCCCEEEEE----ECCCCCE
T ss_conf 8855999997----52458428996899823368877789987977999946887559999----4689971
No 166
>PRK11749 putative oxidoreductase; Provisional
Probab=47.88 E-value=19 Score=15.88 Aligned_cols=35 Identities=34% Similarity=0.531 Sum_probs=28.3
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 553389328974035333338889999985399789999
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
....||+|++|=- |+|.--....+++.||++|++.
T Consensus 272 ~~~~Gk~VvVIGg----GnvA~D~Arta~r~GA~~V~vv 306 (460)
T PRK11749 272 LIAVGKRVVVIGG----GNTAMDAARTAKRLGAESVTIV 306 (460)
T ss_pred CCCCCCEEEEECC----CHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5544874899898----4669998999998289846330
No 167
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235 Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production..
Probab=47.66 E-value=8.8 Score=18.31 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=6.6
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 899999998649824
Q gi|254780336|r 122 GLTLRKKLISSGAIF 136 (488)
Q Consensus 122 ~~eLr~~L~~~g~~f 136 (488)
..+|-+++.++||+.
T Consensus 78 ~pdLvKRM~~EGHiv 92 (225)
T TIGR02884 78 QPDLVKRMVDEGHIV 92 (225)
T ss_pred CHHHHHHHHHCCCEE
T ss_conf 667666555458343
No 168
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=47.41 E-value=20 Score=15.83 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHH-HHC
Q ss_conf 3728999999999999874865677-20120012047799999981996001001176532101106446777653-201
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV-KLK 347 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v-~~K 347 (488)
-|.++++.=+ .|..- .| +|+=.|+.+.+ ..+|+.+.+|.--++-. . =-|+|.+=+... +.+
T Consensus 85 kgEsl~Dt~~----~l~~~----~D~iviR~~~~~~~--~~~a~~~~vPVINa~~d-----~--~HPtQaL~Dl~Ti~e~ 147 (308)
T PRK00779 85 RGEPIEDTAR----VLSRY----VDAIMIRTFEHETL--EELAEYSTVPVINGLTD-----L--SHPCQILADLLTIYEH 147 (308)
T ss_pred CCCCHHHHHH----HHHHH----CCEEEEECCCCCHH--HHHHHHCCCCEEECCCC-----C--CCCHHHHHHHHHHHHH
T ss_conf 8978999999----99854----77999932430118--99987489878967888-----7--6738999999999998
Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 34324553389328974035333338889999985399789999658980588
Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
+ .-++|++|.+|-|. .++.+..+.++...|+ ++++++||--.|
T Consensus 148 ~----g~l~gl~i~~vGD~---~nV~~Sl~~~~~~~g~---~v~~~~P~~~~~ 190 (308)
T PRK00779 148 R----GSIKGKTVAWVGDG---NNVANSLLLAAALLGF---DLRVATPKGYEP 190 (308)
T ss_pred H----CCCCCCEEEEECCC---CCHHHHHHHHHHHCCC---EEEEECCCCCCC
T ss_conf 3----86778759998387---4539999999997799---899988830278
No 169
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=46.41 E-value=20 Score=15.73 Aligned_cols=11 Identities=9% Similarity=0.528 Sum_probs=5.0
Q ss_pred HHHHHHCCEEE
Q ss_conf 99865304399
Q gi|254780336|r 164 SLRHVQGAYAM 174 (488)
Q Consensus 164 ~l~~l~Gaysl 174 (488)
.+..|+|-|-+
T Consensus 219 ~~t~I~g~F~~ 229 (487)
T TIGR01578 219 LITEIPGDFRL 229 (487)
T ss_pred HHHHCCCCCEE
T ss_conf 98625993278
No 170
>pfam03387 Herpes_UL46 Herpesvirus UL46 protein.
Probab=45.55 E-value=10 Score=17.86 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=16.9
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1002474300037289999999999998
Q gi|254780336|r 259 YVYFARPDSIISGRSIYVSRRNMGKNLA 286 (488)
Q Consensus 259 yIYFarpdS~~~g~~Vy~~R~~lG~~La 286 (488)
|.||+|||-... .=-+.+.||.+.||
T Consensus 181 YmYyMRPdDP~~--~S~DT~~RL~ella 206 (443)
T pfam03387 181 YMYYMRPDDPMT--PSPDTSARLQELLA 206 (443)
T ss_pred HHHCCCCCCCCC--CCCHHHHHHHHHHH
T ss_conf 874048999788--99408899999999
No 171
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=45.31 E-value=14 Score=16.80 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=25.4
Q ss_pred HHCCCCEEE--EEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 533893289--74035333338889999985399
Q gi|254780336|r 354 ILAGKRVVL--IDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 354 ~i~gk~vvl--vDDSIVRGtT~k~iv~~lr~aGa 385 (488)
.++|..++- .+++|+.|+|-+.|++++++.|-
T Consensus 192 ~vk~~~l~TPpl~~~iL~GItR~~iiela~~~gi 225 (292)
T PRK08320 192 IVKNGKLITPPSSAGALEGITRNTVIEIAEELGI 225 (292)
T ss_pred EEECCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9989989927865787888799999999998699
No 172
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=45.15 E-value=21 Score=15.60 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=4.6
Q ss_pred HCCEEEEEECC
Q ss_conf 15659999818
Q gi|254780336|r 13 EKCGVFGILGH 23 (488)
Q Consensus 13 ~eCGI~Gi~~~ 23 (488)
....++=+|+.
T Consensus 18 ~~~~~~LlyG~ 28 (343)
T PRK06585 18 GKIRAVLLYGP 28 (343)
T ss_pred CCCEEEEEECC
T ss_conf 47658999638
No 173
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=45.02 E-value=20 Score=15.77 Aligned_cols=60 Identities=23% Similarity=0.457 Sum_probs=32.3
Q ss_pred CEEEE-EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHH
Q ss_conf 32897-403533333888999998539978999965898058865650058978885466999889998
Q gi|254780336|r 359 RVVLI-DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCN 426 (488)
Q Consensus 359 ~vvlv-DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~ 426 (488)
+||-+ +-||+-|--+ .+...|-+.|+..+ .|++.| .-||.- .+..||..+.--+.+.|.+
T Consensus 246 ~IvT~EeHsi~GGlGs-aVAEvlse~~p~~~-~riGvp-----~~fg~s-g~~~~Ll~~ygl~~~~I~~ 306 (312)
T COG3958 246 RIVTAEEHSIIGGLGS-AVAEVLSENGPTPM-RRIGVP-----DTFGRS-GKADELLDYYGLDPESIAA 306 (312)
T ss_pred CEEEEECCEEECCHHH-HHHHHHHHCCCCCE-EEECCC-----CHHCCC-CCHHHHHHHHCCCHHHHHH
T ss_conf 3899863322356269-99999986199636-883277-----312122-3569999981999999999
No 174
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I; InterPro: IPR011908 This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria .; GO: 0016757 transferase activity transferring glycosyl groups, 0009103 lipopolysaccharide biosynthetic process.
Probab=44.66 E-value=16 Score=16.51 Aligned_cols=38 Identities=29% Similarity=0.178 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEE
Q ss_conf 6772012001204779999998199600100117653210110
Q gi|254780336|r 292 IADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIE 334 (488)
Q Consensus 292 ~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~ 334 (488)
.++.|||| |||+.+ .|.+++.|-.. |.-|.--+||=-.
T Consensus 284 ~a~avVGv-DTGL~H---LA~Al~kP~v~-lY~~T~p~~tg~~ 321 (359)
T TIGR02193 284 GADAVVGV-DTGLTH---LAAALDKPTVT-LYGATDPGRTGGY 321 (359)
T ss_pred CCEEEEEC-CHHHHH---HHHHHCCCEEE-EECCCCHHHHCCC
T ss_conf 77079972-524899---99984797698-7358783561775
No 175
>pfam08029 HisG_C HisG, C-terminal domain.
Probab=44.60 E-value=19 Score=15.97 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3533333888999998539978999
Q gi|254780336|r 366 SIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 366 SIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
++|.......++..|+++||+-|-+
T Consensus 43 ~vV~~~~~~~~~~~Lk~~GA~~Ilv 67 (73)
T pfam08029 43 AVVPEKEVWEIMDELKALGASGILV 67 (73)
T ss_pred EEEEHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9982789999999999879977999
No 176
>pfam12112 DUF3579 Protein of unknown function (DUF3579). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif.
Probab=43.15 E-value=17 Score=16.35 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=18.4
Q ss_pred CCCHHHHHHCCCCEEE----EEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEE
Q ss_conf 1504443206876789----875122268986002786787469971999996550
Q gi|254780336|r 68 FTKPETLSLLPGNMAI----GHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNF 119 (488)
Q Consensus 68 f~~~~~l~~l~G~~~I----GHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI 119 (488)
|...+..+.|.|.++- +|..||- .++|... .|.=+++.+..|
T Consensus 20 FRPSDWaERL~Gv~a~f~~~~r~~YSp-------~~~P~~~---~G~kcvvvd~~L 65 (93)
T pfam12112 20 FRPSDWAERLCGVMSSFRPGGRLSYSP-------YVRPGVI---GGVKCVVVDARL 65 (93)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEECC-------CCCCEEE---CCEEEEEECCHH
T ss_conf 288529999741154008999476267-------5454265---885799986074
No 177
>TIGR01380 glut_syn glutathione synthase; InterPro: IPR006284 These are the glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. ; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process.
Probab=42.85 E-value=7.5 Score=18.81 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999877315887
Q gi|254780336|r 30 TAIGLHALQHRGQE 43 (488)
Q Consensus 30 ~~~gL~~LQHRGqd 43 (488)
+|.+|..-|-||.+
T Consensus 20 t~alm~EaQ~RgH~ 33 (322)
T TIGR01380 20 TFALMEEAQKRGHE 33 (322)
T ss_pred HHHHHHHHHHCCCE
T ss_conf 79999898546938
No 178
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=41.69 E-value=24 Score=15.24 Aligned_cols=111 Identities=20% Similarity=0.282 Sum_probs=61.7
Q ss_pred ECCCEEEEEECCHH-CCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHH
Q ss_conf 26956999861200-10478741233178707999408984799875307765664200000100247430003728999
Q gi|254780336|r 198 ELHGKPIFCSETCA-LEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYV 276 (488)
Q Consensus 198 ~~~~~~v~ASEs~A-l~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~ 276 (488)
...+++.+.+.=-. |+.-|.. | ..|....-+.+.++|..++..-.. ..+...--+..+=|..|+...
T Consensus 122 ~d~~G~LVT~~G~~vl~~~G~~-i--~i~~~~~~i~i~~dG~v~~~~~~~--~~~~~~g~i~lv~f~n~~gL~------- 189 (265)
T COG4786 122 VDEEGQLVTSNGYPVLDSGGNP-I--TIPNNAGSITIGKDGTVSVTIRGN--TDPVQVGQIGLVNFDNPAGLK------- 189 (265)
T ss_pred ECCCCCEEECCCCCCCCCCCCC-E--ECCCCCEEEEECCCCEEEEEECCC--CCCEEEEEEEEEEECCCHHHH-------
T ss_conf 8899878807997745788872-4--528874455532564478996588--661475368899813806643-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHHHHHCCCCEEHHEEC
Q ss_conf 9999999998748656772012001204779--99999819960010011
Q gi|254780336|r 277 SRRNMGKNLAKESPVIADIVVPIPDGGVPAA--IGYAKESGIPFEQGIIR 324 (488)
Q Consensus 277 ~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA--~gya~~~gip~~~~lvk 324 (488)
++|..|..+.+... -..++|.-.-..+ -||.|.|++...+.++.
T Consensus 190 ---k~G~nl~~~t~~sg-~~~~~~~~~~~g~i~QG~lE~SNVn~v~EMt~ 235 (265)
T COG4786 190 ---KIGNNLYQETAASG-PIVGVPGDNGFGAIRQGFLEASNVNVVEEMTD 235 (265)
T ss_pred ---HCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCHHCCCCHHHHHHH
T ss_conf ---30775310168877-75467787875527864121205679999999
No 179
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=41.64 E-value=24 Score=15.23 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=28.2
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 389328974035333338889999985399789999
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
+++.||++|++=.|| .+....+.|+++|=+.|+..
T Consensus 49 kd~~Ivvyc~~g~~~-~s~~Aa~~L~~~Gy~~V~~L 83 (92)
T cd01532 49 RDTPIVVYGEGGGED-LAPRAARRLSELGYTDVALL 83 (92)
T ss_pred CCCEEEEEECCCCCH-HHHHHHHHHHHCCCCCEEEC
T ss_conf 998299996999962-99999999998699686885
No 180
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.35 E-value=15 Score=16.65 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=21.1
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC--CCCCEEC
Q ss_conf 9999985399789999658980588--6565005
Q gi|254780336|r 376 IVQMIRSAGASEVHLRVASPMVLYP--DFYGIDI 407 (488)
Q Consensus 376 iv~~lr~aGa~evh~ri~sPpi~~p--c~yGid~ 407 (488)
=.|+|++.|.++|.+. ++ |-++. -=|||.+
T Consensus 330 GAQIL~dLGV~kirLL-nn-p~K~~gL~GyGLeI 361 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GP-PLKYAGLTGYDLEV 361 (369)
T ss_pred HHHHHHHCCCCEEEEC-CC-CCCCCCCCCCCCEE
T ss_conf 9999987799989986-99-97702116579789
No 181
>pfam02780 Transketolase_C Transketolase, C-terminal domain. The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.
Probab=41.31 E-value=24 Score=15.20 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=39.7
Q ss_pred CCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE---EEEEECCCCCC
Q ss_conf 21011064467776532013432455338932897403533333888999998539978---99996589805
Q gi|254780336|r 329 GRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE---VHLRVASPMVL 398 (488)
Q Consensus 329 gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e---vh~ri~sPpi~ 398 (488)
.=.|+.|=+..- + .+..-+-++|+.|+|..+.|--...|...|.+.|... =-.|++.|-.-
T Consensus 42 d~~~ikPlD~~~---i------~~~~~~~~~vvtvEe~~~~gG~Gs~i~~~l~e~~~~~l~~~v~~ig~pd~~ 105 (124)
T pfam02780 42 DLRTVKPLDEDT---I------LESVKKTGRLVVVEEAVPRGGFGAEVAAALAEEGFDYLDAPVLRVGGPDTP 105 (124)
T ss_pred EEEEECCCCHHH---H------HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCHHHCCCCEEEECCCCCC
T ss_conf 423643667899---9------998733486899846886786899999999985665449996997479898
No 182
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=40.50 E-value=20 Score=15.71 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=11.5
Q ss_pred EEECHHHHHHHHCCCC
Q ss_conf 8833989998611466
Q gi|254780336|r 434 GFLSVDGLYNAICGIP 449 (488)
Q Consensus 434 ~yls~e~l~~ai~~~~ 449 (488)
.|+.++.|.+.|..++
T Consensus 486 l~LrL~aL~~qVd~LP 501 (653)
T PRK06975 486 LAIKLDDAIAKIDALP 501 (653)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999886386
No 183
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=38.75 E-value=25 Score=15.03 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCC----EEEEECHHHH
Q ss_conf 88899999853997899996589805886565005897888546699988999870997----7888339899
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVD----SLGFLSVDGL 441 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igad----sl~yls~e~l 441 (488)
++.+++++++.|.+=+|+-++= + -..|.-..... +..+.+++.++.+ |+.--|-|+|
T Consensus 298 L~~~~~~~~~~g~~i~n~d~~i---i------~e~Pki~p~~~---~~~~~ls~~l~~~~~~v~ikatT~e~l 358 (382)
T PRK09382 298 LEHAVDLVREAGFEIANADVTI---I------AEAPKIGPHKE---AMRENLADLLGIDADRVSVKATTTEKL 358 (382)
T ss_pred HHHHHHHHHHCCCEEEEEEEEE---E------CCCCCCHHHHH---HHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 9999999998699899999999---9------07787578999---999999998599810289999517887
No 184
>KOG1503 consensus
Probab=38.24 E-value=27 Score=14.87 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=41.4
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCC
Q ss_conf 2455338932897403533333888999998539978999965898058865650058978885466
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANK 417 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~ 417 (488)
+-.-+.|+--++|||-|=--..--.-..+|++.||-+|+|.-+---+-.--.--++-+.-+|.+--|
T Consensus 241 vvgdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~lees~idevvvtn 307 (354)
T KOG1503 241 VVGDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLEESPIDEVVVTN 307 (354)
T ss_pred EEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHCCCCCEEEEEC
T ss_conf 9822686589985335776999999999998558558999860453456652344118874599845
No 185
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=37.84 E-value=27 Score=14.83 Aligned_cols=159 Identities=21% Similarity=0.327 Sum_probs=102.8
Q ss_pred CCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 95699986120010478741233178707999408984799875307765664200000100247430003728999999
Q gi|254780336|r 200 HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRR 279 (488)
Q Consensus 200 ~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~ 279 (488)
.+.-+..|=.-.|+.+-.-..+-..-|.+|+ + +++ -|=++|-
T Consensus 45 ~~Ae~~~sA~m~L~ei~~~m~~a~~~GK~Vv-R--------LHs--------------------------GDPsIYG--- 86 (252)
T TIGR01465 45 PGAEVVNSAAMSLEEIVDIMVDAVREGKLVV-R--------LHS--------------------------GDPSIYG--- 86 (252)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCEEE-E--------EEC--------------------------CCHHHHH---
T ss_conf 9888860502698899999999986698499-9--------850--------------------------8755776---
Q ss_pred HHHHHHHH--HCCCCCCCCCCCCCCHHHHH-HHHHHHCCCCE-EHHEECCCCCC-CEEEECCHHHHHHH-----------
Q ss_conf 99999987--48656772012001204779-99999819960-01001176532-10110644677765-----------
Q gi|254780336|r 280 NMGKNLAK--ESPVIADIVVPIPDGGVPAA-IGYAKESGIPF-EQGIIRNHYVG-RTFIEPSHHIRAFG----------- 343 (488)
Q Consensus 280 ~lG~~La~--~~~~~~DiV~~VPdsg~~aA-~gya~~~gip~-~~~lvkn~y~g-RtFI~p~~~~R~~~----------- 343 (488)
.+.+++.. ...++.+||=|| |+..|| -..--||=+|= .|-.|=+|-.| ||=.+-..++++.+
T Consensus 87 A~~EQ~~~L~~~gI~~e~vPGv--Ssf~AAAA~l~~ELT~P~vsQtvilTR~eG~RtPmPe~E~l~~lA~hgaTm~IfLs 164 (252)
T TIGR01465 87 AIAEQMQLLEALGIPYEVVPGV--SSFFAAAAALGAELTVPEVSQTVILTRAEGRRTPMPEGEKLADLAKHGATMAIFLS 164 (252)
T ss_pred HHHHHHHHHHHCCCCEEEECCC--HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHH
T ss_conf 6999999998678977986887--38989999730014788403424467543435457766789988741231356778
Q ss_pred HHHCCCCCHHHHCC-----CCEEEE------EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 32013432455338-----932897------403533333888999998539978999965898058
Q gi|254780336|r 344 VKLKHSANRTILAG-----KRVVLI------DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLY 399 (488)
Q Consensus 344 v~~K~~~~~~~i~g-----k~vvlv------DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~ 399 (488)
+++--..+++++.| =-|++| |.-|||||= +.|...+|+.+=+.=-+-+.+|-+.-
T Consensus 165 ~~~~~~vv~~L~~~GY~~DTPV~vVyratWPDE~I~RgtL-~~l~~~~~~~~i~~ttlilVG~aL~~ 230 (252)
T TIGR01465 165 AHIIDKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTL-ADLAEKVREEGIKRTTLILVGPALDP 230 (252)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEECCH-HHHHHHHHHCCCEEEEEEEEECCCCC
T ss_conf 9999999999983776888878989851487565897156-88899998649735444788412166
No 186
>KOG0519 consensus
Probab=37.47 E-value=28 Score=14.79 Aligned_cols=71 Identities=21% Similarity=0.367 Sum_probs=52.2
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCC-CCCCCEECCCHHHHHHCCCCCHH
Q ss_conf 2455338932897403533333888999998539978999965-------898058-86565005897888546699988
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLY-PDFYGIDIPDPTALLANKCSSPQ 422 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~-pc~yGid~p~~~eLia~~~~~~e 422 (488)
....++|++|+||||..|- .+-.-.||+..|++.+-+-.+ .||--| -||+-+-||..+-+-| ..
T Consensus 660 ~~~~l~g~~iLlvddn~vn---~~Va~~~l~~~g~~v~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~-----~~ 731 (786)
T KOG0519 660 DSKLLTGPKILLVDDNPVN---RKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEA-----TR 731 (786)
T ss_pred CCCHHCCCCEEEECCCCCC---HHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHH-----HH
T ss_conf 2211036765785587101---999998999739645742886999986389986327999757755554999-----99
Q ss_pred HHHHHHC
Q ss_conf 9998709
Q gi|254780336|r 423 EMCNFIG 429 (488)
Q Consensus 423 ei~~~ig 429 (488)
|||++.+
T Consensus 732 ~irk~~~ 738 (786)
T KOG0519 732 EIRKKER 738 (786)
T ss_pred HHHHHHC
T ss_conf 9987516
No 187
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=37.36 E-value=28 Score=14.78 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=7.7
Q ss_pred CCCCEEEEEEECC
Q ss_conf 1787079994089
Q gi|254780336|r 223 VENGETIVCELQE 235 (488)
Q Consensus 223 v~PGEiivi~~~~ 235 (488)
|..|.++.|+.+.
T Consensus 172 V~~GDVI~Id~~s 184 (395)
T pfam06068 172 VQAGDVIYIDKNT 184 (395)
T ss_pred CCCCCEEEEECCC
T ss_conf 8668789998587
No 188
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=37.26 E-value=28 Score=14.77 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=25.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 53389328974035333338889999985399789999
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
.-.|..|+-|++--|+|-|...++++||+++. .+.+.
T Consensus 44 L~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~-~v~L~ 80 (82)
T cd00992 44 LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EVTLT 80 (82)
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEE
T ss_conf 99999989899999999989999999984999-59999
No 189
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.14 E-value=28 Score=14.76 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEHH-E---ECC---------CCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCE
Q ss_conf 7201200120477999999819960010-0---117---------65321011064467776532013432455338932
Q gi|254780336|r 294 DIVVPIPDGGVPAAIGYAKESGIPFEQG-I---IRN---------HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360 (488)
Q Consensus 294 DiV~~VPdsg~~aA~gya~~~gip~~~~-l---vkn---------~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~v 360 (488)
.+|++ +.++..+|.-+.+.-|+||... + +++ +..|+.-+..-.++|.+.+. .+......+.|||+
T Consensus 225 ni~~~-~~~~~~~a~~L~~~~giP~~~~~~P~G~~~T~~~l~~la~~~g~~~~~~~~~er~r~~d-~~~d~~~~l~gkrv 302 (428)
T cd01965 225 TIALG-EYSGRKAAKALEEKFGVPYILFPTPIGLKATDEFLRALSKLSGKPIPEELERERGRLLD-AMLDSHFYLGGKRV 302 (428)
T ss_pred EEEEC-HHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHCCCCEE
T ss_conf 99988-88999999999998599848437764679999999999998489955999999999999-99999986079789
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8974035333338889999985399789999658
Q gi|254780336|r 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 361 vlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
.+.=| ++..-.+.+.|.+.|..=+.+.+..
T Consensus 303 ai~~~----~~~~~~l~~~L~elG~~~~~~~~~t 332 (428)
T cd01965 303 AIAGD----PDLLLGLSRFLLEMGAEPVAAVTGT 332 (428)
T ss_pred EEECC----CHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 99888----1889999999998599567999817
No 190
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=36.92 E-value=28 Score=14.73 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=42.0
Q ss_pred HHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99819960010011765321011064467776532013432455338932897403533333888999998539978999
Q gi|254780336|r 311 AKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 311 a~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
.+.+++|=++. ++=|.+-.|+...+ | ..........-.++||+|++|= -|+|.--.+...++.||++||.
T Consensus 241 ~r~l~ipG~~~--~GV~~A~dfL~~~~--~--~~~~~~~~~~~~~~Gk~VvVIG----GGntAmD~arta~R~GA~~V~r 310 (472)
T PRK12810 241 PRDLGIPGRDL--DGVHFAMDFLIQNT--R--VLGGEKDEPFILAKGKHVVVIG----GGDTGMDCVGTSIRQGAKSVTQ 310 (472)
T ss_pred CCCCCCCCCCC--CCEEEHHHHHHHHH--H--HHCCCCCCCCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 85278777667--88588699999998--7--5337876666322476589989----8668999999999738968999
Q ss_pred EEC
Q ss_conf 965
Q gi|254780336|r 391 RVA 393 (488)
Q Consensus 391 ri~ 393 (488)
|--
T Consensus 311 r~~ 313 (472)
T PRK12810 311 RDI 313 (472)
T ss_pred EEE
T ss_conf 751
No 191
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.84 E-value=28 Score=14.72 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=17.5
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 932897403533333888999998539978999
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
+.|..||||- .|+.-..+..|+... +.|++
T Consensus 325 ~gv~~iNDSk--aTn~~s~~~AL~~~~-~~iil 354 (458)
T PRK01710 325 NGVKYYNDSI--ASSPTRTLAGLNAFE-KPVIL 354 (458)
T ss_pred CCEEEEECCC--CCCHHHHHHHHHCCC-CCEEE
T ss_conf 4767981576--689899999997167-77299
No 192
>TIGR02704 carboxysome_B carboxysome peptide B; InterPro: IPR014077 This entry describes the carboxysome operon protein orfB (protein B of Thiobacillus denitrificans). It distinguishes one of two closely related paralogs encoded by nearby genes in the carboxysome operons of a number of cyanobacteria and chemoautotrophic bacteria. More distantly related proteins are components of other types of shell such as the shell of the ethanolamine degradation organelle..
Probab=36.46 E-value=29 Score=14.68 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=28.3
Q ss_pred HHHHC--CEEEEEEECC--EEEEEEECCCCCEEEEEECCCEEEEE-ECCHHCC
Q ss_conf 86530--4399996399--79999825665415998269569998-6120010
Q gi|254780336|r 166 RHVQG--AYAMLALTRT--KLIATRDPIGIRPLIMGELHGKPIFC-SETCALE 213 (488)
Q Consensus 166 ~~l~G--ayslv~l~~~--~l~~~RDp~GiRPL~~G~~~~~~v~A-SEs~Al~ 213 (488)
++++| ..||=+|.++ ++-++-||.|.++ +.|+|+ |=|.|=-
T Consensus 14 rR~pGL~~~sLRvL~~~~G~~~VA~DPvG~p~-------G~WVft~sGSAAR~ 59 (80)
T TIGR02704 14 RRIPGLKNASLRVLEDAKGKISVAVDPVGAPE-------GKWVFTVSGSAARF 59 (80)
T ss_pred ECCCCCCCCEEEEECCCCCCEEEEECCCCCCC-------CCEEEEECCHHHHC
T ss_conf 02556555025652299964678545767898-------97799700216323
No 193
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=36.40 E-value=29 Score=14.68 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHCCCCEEHHEECCCCCC----CEEE--------ECC------HHHHHHHHHHCCCCCHHHHCCCCEE
Q ss_conf 012047799999981996001001176532----1011--------064------4677765320134324553389328
Q gi|254780336|r 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVG----RTFI--------EPS------HHIRAFGVKLKHSANRTILAGKRVV 361 (488)
Q Consensus 300 Pdsg~~aA~gya~~~gip~~~~lvkn~y~g----RtFI--------~p~------~~~R~~~v~~K~~~~~~~i~gk~vv 361 (488)
++++..+|.-+-+.-|+||...+ .+| ..|+ .|. +++|. .+...+...+..++||+++
T Consensus 216 ~~~~~~~a~~L~~~fgip~~~~~----PiG~~~T~~fl~~la~~~g~~~~~e~~i~~e~~-~~~~~l~~~~~~l~Gkrv~ 290 (406)
T cd01967 216 SRSMNYLAREMEERYGIPYMEVN----FYGFEDTSESLRKIAKFFGDEEKAEEVIAEEEA-RIKPELEKYRERLKGKKVI 290 (406)
T ss_pred HHHHHHHHHHHHHHHCCCEEECC----CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHCCCEEE
T ss_conf 57899999999996097442057----677899999999999985996006899999999-9999999999983697599
Q ss_pred EE-EHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 97-4035333338889999985399789999
Q gi|254780336|r 362 LI-DDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 362 lv-DDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
+. |...+.+ +..+|+|.|..=|.+.
T Consensus 291 i~~~~~~~~~-----~~~~l~ElG~evv~~~ 316 (406)
T cd01967 291 IYTGGARSWH-----VIAALRELGMEVVAAG 316 (406)
T ss_pred EECCCHHHHH-----HHHHHHHCCCEEEEEE
T ss_conf 9768546899-----9999998899699987
No 194
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=36.10 E-value=29 Score=14.65 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=66.0
Q ss_pred CEEEECC-HHHHHHHHHHCCCCCHHHHCCCCEEEEEH-HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---CCCC
Q ss_conf 1011064-46777653201343245533893289740-35333338889999985399789999658980588---6565
Q gi|254780336|r 330 RTFIEPS-HHIRAFGVKLKHSANRTILAGKRVVLIDD-SIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP---DFYG 404 (488)
Q Consensus 330 RtFI~p~-~~~R~~~v~~K~~~~~~~i~gk~vvlvDD-SIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p---c~yG 404 (488)
=||--.. ...| .+|.-|-|.-.-++.+.-|.+--- .+.=+-|.-.|.+.|.--|+++|-|.+--|.-... -.-|
T Consensus 506 GTy~HSG~LAIR-aaVAa~~niTyKiLyNdAVAMTGGQ~~dG~ltv~~i~~ql~aEGv~~i~vvsd~p~~y~~~~~~p~g 584 (1168)
T PRK13030 506 GTYFHSGLLAIR-QAVAAGANITYKILYNDAVAMTGGQPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYDGHHDLPAG 584 (1168)
T ss_pred CCCHHCCHHHHH-HHHHCCCCEEEEEEECCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCC
T ss_conf 620203269999-9997699738999856813114898898998999999999967983699965795763553458999
Q ss_pred EECCCHHHHHHCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 005897888546699988999870997788833
Q gi|254780336|r 405 IDIPDPTALLANKCSSPQEMCNFIGVDSLGFLS 437 (488)
Q Consensus 405 id~p~~~eLia~~~~~~eei~~~igadsl~yls 437 (488)
+.+-.|++|.+.+ +|+++.-|++-|.|--
T Consensus 585 v~v~hRd~l~~vQ----reLr~~~GvtvlIydQ 613 (1168)
T PRK13030 585 TTFHHRDELDAVQ----RELRETPGVTVLIYDQ 613 (1168)
T ss_pred CEEECHHHHHHHH----HHHHHCCCCEEEEEHH
T ss_conf 8455277679999----9997368927999610
No 195
>KOG1017 consensus
Probab=35.70 E-value=13 Score=17.13 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=41.2
Q ss_pred CCCCEEEECCHHH-HHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 5321011064467-776532013432455338932897403533333888999998539978
Q gi|254780336|r 327 YVGRTFIEPSHHI-RAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 (488)
Q Consensus 327 y~gRtFI~p~~~~-R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e 387 (488)
.+|.-.|..+|.- |.+.+--+ ...-|.-++|+|.=--|-.|||.-.-|+.|+|+|.-+
T Consensus 161 RIGKILi~sd~~t~~akV~YAr---fppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~ 219 (267)
T KOG1017 161 RIGKILIGSDQNTHEAKVLYAR---FPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPD 219 (267)
T ss_pred EEEEEEECCCCCCCEEEEEEEE---CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 0001785365553201588774---6985232168998413047813899999999819996
No 196
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=35.61 E-value=19 Score=15.96 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=39.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCC---HHHHHHCCCCCHHHHHHHH
Q ss_conf 389328974035333338889999985399789999658980588656500589---7888546699988999870
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPD---PTALLANKCSSPQEMCNFI 428 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~---~~eLia~~~~~~eei~~~i 428 (488)
.+|.|.-.-.=|-+|+|...+.+.|++.||++||. ++||- .+.+||+...+.|.-|..+
T Consensus 223 fakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~--------------~emaqgqK~SrfIaWtf~d~eqr~~wi 284 (292)
T COG3129 223 FAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVK--------------KEMAQGQKQSRFIAWTFMDDEQRRRWV 284 (292)
T ss_pred HHHHEEHHEEECCCCCCCHHHHHHHHHHCCEEEEE--------------HHHCCCCCCCEEEEEEEECHHHHHHHH
T ss_conf 76401210011277678878999999730225420--------------121033432126888861789999999
No 197
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.99 E-value=30 Score=14.53 Aligned_cols=23 Identities=9% Similarity=0.423 Sum_probs=17.6
Q ss_pred CEEEECCCCEEEEEEECCCCEEE
Q ss_conf 41233178707999408984799
Q gi|254780336|r 218 KYIRDVENGETIVCELQEDGFIS 240 (488)
Q Consensus 218 ~~irdv~PGEiivi~~~~~g~~~ 240 (488)
+...+...||+++.+++.+|..+
T Consensus 155 ~~~~~~g~~eii~tdI~~dGt~~ 177 (240)
T PRK13585 155 QRFEELGAGSILFTNVDVEGLLQ 177 (240)
T ss_pred HHHHHCCCCEEEEEEECCHHHHC
T ss_conf 88886387358986423322325
No 198
>TIGR01347 sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR006255 These sequences describe the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. Members include the mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus and are generally excluded from this group of sequences as are all examples of dihydrolipoamide acetyltransferase. ; GO: 0004149 dihydrolipoyllysine-residue succinyltransferase activity, 0006099 tricarboxylic acid cycle, 0045252 oxoglutarate dehydrogenase complex.
Probab=34.86 E-value=7.7 Score=18.74 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=7.8
Q ss_pred EEEEEECCEEE--EEEE
Q ss_conf 99996399799--9982
Q gi|254780336|r 173 AMLALTRTKLI--ATRD 187 (488)
Q Consensus 173 slv~l~~~~l~--~~RD 187 (488)
|+++-|+.||+ ++||
T Consensus 299 svAVsTd~GLVvPVvRn 315 (435)
T TIGR01347 299 SVAVSTDRGLVVPVVRN 315 (435)
T ss_pred EEEEECCCCCEEEEEEC
T ss_conf 99987599833422725
No 199
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.70 E-value=20 Score=15.83 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=28.4
Q ss_pred EEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH-HHHHHHCCEEEEEE
Q ss_conf 999655087899999998649824234307898898987302567056899-99865304399996
Q gi|254780336|r 113 IAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFID-SLRHVQGAYAMLAL 177 (488)
Q Consensus 113 iaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~-~l~~l~Gayslv~l 177 (488)
+--+|.+-...+|.+.-.+.+....| =.++|.+-+. ++.+.+...+ .+..--|.|.+...
T Consensus 170 ~n~DGtMaR~~~L~~FA~~h~L~iis--I~dLI~YR~~---~E~lV~r~~~~~LPT~~G~F~~~~Y 230 (552)
T PRK09319 170 QNPDGSMARLPQLKEYARQWGLKLIS--IADLISYRLQ---NERFVYREAVAKLPSQFGQFQAYGY 230 (552)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEE--HHHHHHHHHH---CCCCCEEEEEEEEECCCCCEEEEEE
T ss_conf 77998652489999999985996989--9999999985---5676403357778547887899999
No 200
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=34.70 E-value=27 Score=14.80 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=24.5
Q ss_pred HCCCCEEE--EEHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 33893289--740353333388899999853997
Q gi|254780336|r 355 LAGKRVVL--IDDSIVRGTTSVKIVQMIRSAGAS 386 (488)
Q Consensus 355 i~gk~vvl--vDDSIVRGtT~k~iv~~lr~aGa~ 386 (488)
|+|.+++- .+++|+.|.|-+.|+++.++.|-.
T Consensus 192 Vk~~~l~TPp~~~~iL~GITR~~vi~la~~~gi~ 225 (290)
T PRK12400 192 IKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIP 225 (290)
T ss_pred EECCEEEECCCCCCCCCCHHHHHHHHHHHHCCCE
T ss_conf 9899899688766651459999999999986986
No 201
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=34.51 E-value=30 Score=14.52 Aligned_cols=28 Identities=21% Similarity=0.074 Sum_probs=18.5
Q ss_pred HHHHHHHCCCEEEEECHHHHHHHHCCCC
Q ss_conf 8999870997788833989998611466
Q gi|254780336|r 422 QEMCNFIGVDSLGFLSVDGLYNAICGIP 449 (488)
Q Consensus 422 eei~~~igadsl~yls~e~l~~ai~~~~ 449 (488)
|.+...-|+.+-.+.+++.|.+.+....
T Consensus 323 E~v~~~a~~~~~~~~~~eel~~~i~~aG 350 (370)
T COG1060 323 EKVNPAAGAFSGDWRSVEELAALIKEAG 350 (370)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 3436555555678999999999999849
No 202
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=34.30 E-value=26 Score=15.03 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 7899999998649824234307898
Q gi|254780336|r 121 NGLTLRKKLISSGAIFQSTSDTEVI 145 (488)
Q Consensus 121 N~~eLr~~L~~~g~~f~s~sDTEvI 145 (488)
|--++.+.|..+|..|.---|-..|
T Consensus 37 dP~eia~~lr~rgar~vYiADLdaI 61 (229)
T COG1411 37 DPLEIAEALRERGARFVYIADLDAI 61 (229)
T ss_pred CHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf 8699999976544746886103788
No 203
>KOG3628 consensus
Probab=34.24 E-value=31 Score=14.44 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=29.1
Q ss_pred EEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEEC---CHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 8751222689860027867874699719999965508---78999999986498242343078988989
Q gi|254780336|r 84 GHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT---NGLTLRKKLISSGAIFQSTSDTEVILHLI 149 (488)
Q Consensus 84 GHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~---N~~eLr~~L~~~g~~f~s~sDTEvI~~Li 149 (488)
=|++-.++.+.-.. .+||. +.|=+.++|||-|+ +..+--..+ .|.. .+-|.++..|+.
T Consensus 555 F~~~~~~s~~~~~~-n~~Fm---RtGLlGFv~~gki~vl~~k~d~llq~--~~~~--h~~d~iv~thya 615 (1363)
T KOG3628 555 FKATPVESSGKPPS-NVPFM---RTGLLGFVHNGKIYVLGLKEDGLLQV--SGWR--HNADDIVATHYA 615 (1363)
T ss_pred EEEEECCCCCCCCC-CCHHH---HHCCEEEEECCEEEEEEEEHHHHHHH--HHHH--HHHHHHHHHHHH
T ss_conf 78666344688976-65666---52212244278389999505656554--2103--424566766778
No 204
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.21 E-value=30 Score=14.56 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=17.2
Q ss_pred EEEECCCCEEEEEEECCCCEEE
Q ss_conf 1233178707999408984799
Q gi|254780336|r 219 YIRDVENGETIVCELQEDGFIS 240 (488)
Q Consensus 219 ~irdv~PGEiivi~~~~~g~~~ 240 (488)
...+...||+++.+++.+|..+
T Consensus 153 ~~~~~g~~~ii~TdI~~DGt~~ 174 (231)
T PRK13586 153 HVNSLESLGVIFTYVCNEGTKN 174 (231)
T ss_pred HHHHCCCCEEEEEEECCHHCCC
T ss_conf 9997599889997645112036
No 205
>TIGR02961 allantoicase allantoicase; InterPro: IPR005164 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets . Each jelly-roll motif has two conserved surface patches that probably constitute the active site . ; GO: 0004037 allantoicase activity.
Probab=33.93 E-value=14 Score=16.80 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=18.3
Q ss_pred CCCCCC-CE--EEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCC
Q ss_conf 104787-41--2331787079994089847998753077656642000001002
Q gi|254780336|r 212 LEITGA-KY--IRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYF 262 (488)
Q Consensus 212 l~~ig~-~~--irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYF 262 (488)
|.+=|. +. +|=-.||.|--|.++.. -..-.. ...|+.+=++.
T Consensus 264 L~VPG~vDW~i~~Lg~pG~I~~ievDT~--------HFkGN~-P~~~~l~A~~~ 308 (376)
T TIGR02961 264 LQVPGNVDWAIVRLGAPGLIERIEVDTA--------HFKGNY-PDSCSLQAADL 308 (376)
T ss_pred EEECCEEEEEEEECCCCCEEEEEEEECC--------CCCCCC-CCCEEEEEEEC
T ss_conf 7608703588998488876789998451--------001697-20289989615
No 206
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=33.78 E-value=31 Score=14.39 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=52.6
Q ss_pred HHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHH-HHHHCCCCCHHHHCCCCEEEEEHHHHH--HH-HHHHHHHHH
Q ss_conf 77999999819960010011765321011064467776-532013432455338932897403533--33-388899999
Q gi|254780336|r 305 PAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAF-GVKLKHSANRTILAGKRVVLIDDSIVR--GT-TSVKIVQMI 380 (488)
Q Consensus 305 ~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~-~v~~K~~~~~~~i~gk~vvlvDDSIVR--Gt-T~k~iv~~l 380 (488)
.....+|+.+.+|.--. | +.=-|+|.+=+. -++.++ ...++||+++++++.--+ ++ ..+..+..+
T Consensus 127 ~~~~~~a~~s~vPVIN~-------g-~~~HPtQaL~Dl~Ti~e~~---g~~~~~~~~~i~~~~~~~~~~~~va~S~~~~~ 195 (335)
T PRK04523 127 PVLNSFAKYSTVPVINM-------E-TITHPCQELAHALALQEHF---GTPLRGKKYVLTWTYHPKPLNTAVANSALTIA 195 (335)
T ss_pred HHHHHHHHHCCCCEECC-------C-CCCCCHHHHHHHHHHHHHH---CCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 89999998668873068-------8-8888489999999999983---86336987999985147744146989999999
Q ss_pred HHCCCCEEEEEECCCC
Q ss_conf 8539978999965898
Q gi|254780336|r 381 RSAGASEVHLRVASPM 396 (488)
Q Consensus 381 r~aGa~evh~ri~sPp 396 (488)
...|+ ++++++|+
T Consensus 196 ~~~g~---~v~~~~P~ 208 (335)
T PRK04523 196 TRMGM---DVTLLCPT 208 (335)
T ss_pred HHCCC---EEEEECCC
T ss_conf 97499---08998178
No 207
>PRK13356 aminotransferase; Provisional
Probab=33.51 E-value=32 Score=14.36 Aligned_cols=69 Identities=16% Similarity=0.338 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEE--EEHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999981996001001176532101106446777653201343245533893289--7403533333888999998539
Q gi|254780336|r 307 AIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVL--IDDSIVRGTTSVKIVQMIRSAG 384 (488)
Q Consensus 307 A~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvl--vDDSIVRGtT~k~iv~~lr~aG 384 (488)
|...|++.| |.++|+-|. ..++.-+. . -|. -.++|..++- .+++|..|.|-+.++.++++.|
T Consensus 163 a~~eA~~~g--~deallld~---~G~v~E~s--~-------sNl--Fivk~~~l~TP~~~~~iL~GITR~~vi~la~~~g 226 (286)
T PRK13356 163 ALREARSRG--FDNALVLDM---LGNVAETA--T-------SNV--FMVRDGVVFTPVPNGTFLNGITRQRVIALLRADG 226 (286)
T ss_pred HHHHHHHCC--CCCEEEECC---CCCEEECC--C-------CEE--EEEECCEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 999998719--743068869---99783469--8-------169--9997998994699777035689999999999879
Q ss_pred CCEEEEEE
Q ss_conf 97899996
Q gi|254780336|r 385 ASEVHLRV 392 (488)
Q Consensus 385 a~evh~ri 392 (488)
-+|..|.
T Consensus 227 -i~v~e~~ 233 (286)
T PRK13356 227 -VTVHETT 233 (286)
T ss_pred -CEEEEEE
T ss_conf -8799997
No 208
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=33.21 E-value=32 Score=14.33 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=42.2
Q ss_pred HCCCCEEHHEECCCCCCCEEEECCHH-HHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 81996001001176532101106446-77765320134324553389328974035333338889999985399789999
Q gi|254780336|r 313 ESGIPFEQGIIRNHYVGRTFIEPSHH-IRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 313 ~~gip~~~~lvkn~y~gRtFI~p~~~-~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
+..+||.+.+-++.. ..+.+|+++ .++..-++..+ .++.||+-|-+-+.|-|.-++.=+|+-+|-+.|++-
T Consensus 58 A~~~d~~~~ld~~~~--~~~~lp~~~~f~~~~~~lGI~------~~~~vVvycg~~~sGvtA~r~ww~l~~~G~~~V~vy 129 (138)
T cd01445 58 ASFFDFEECLDEAGF--EESMEPSEAEFAAMFEAKGID------LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAIL 129 (138)
T ss_pred CCCCCHHHHHCCCCC--CCCCCCCHHHHHHHHHHCCCC------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEC
T ss_conf 722588996178999--788888999999999982999------898089983898850199999999998299981682
Q ss_pred E
Q ss_conf 6
Q gi|254780336|r 392 V 392 (488)
Q Consensus 392 i 392 (488)
=
T Consensus 130 D 130 (138)
T cd01445 130 D 130 (138)
T ss_pred C
T ss_conf 6
No 209
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=33.08 E-value=32 Score=14.32 Aligned_cols=130 Identities=17% Similarity=0.268 Sum_probs=57.1
Q ss_pred EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH------CCCCCCHHHHHHHHH--HHCCEEEEEEECCEEEEEEEC-
Q ss_conf 50878999999986498242343078988989873------025670568999986--530439999639979999825-
Q gi|254780336|r 118 NFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARS------QKNGSCDRFIDSLRH--VQGAYAMLALTRTKLIATRDP- 188 (488)
Q Consensus 118 nI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~------~~~~~~e~i~~~l~~--l~Gayslv~l~~~~l~~~RDp- 188 (488)
-+.|...+.++|.+.|.... |-+- ++.+. .-.+..+.+.+..+. +.+ =+ ++..++ ++..||.
T Consensus 171 Gv~~L~~I~~~Li~~G~~~d----TPVA--VV~~GTt~~Qrtv~gTL~~Ia~~v~~~~i~~-PA-vIVVGe-VV~lR~~L 241 (474)
T PRK07168 171 GIKNLPTICKNLRQAGKKED----TPVA--VIEWGTTGKQRVVTGTLSTIVSIVKNENISN-PS-MTIVGD-VVSLRNQI 241 (474)
T ss_pred CHHHHHHHHHHHHHCCCCCC----CCEE--EEECCCCCCCEEEEEEHHHHHHHHHHCCCCC-CE-EEEECC-CCCCCCCC
T ss_conf 46469999999996699999----8289--9976897572899999999999999737899-82-999884-00555536
Q ss_pred --CCCCEEEEEECCCEEEE------EEC-CHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEH
Q ss_conf --66541599826956999------861-200104787412331787079994089847998753077656642000001
Q gi|254780336|r 189 --IGIRPLIMGELHGKPIF------CSE-TCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEY 259 (488)
Q Consensus 189 --~GiRPL~~G~~~~~~v~------ASE-s~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEy 259 (488)
+--|||+ |+ ..++ ||+ +..|...|++-+ |+.- |++. .+......-.+.-.|+|
T Consensus 242 ~WfE~kPLf-G~---rVLVtRtreQA~~ls~~L~~~GA~v~-E~Pt-----I~~~--------~~~~~~~~i~~l~~ydw 303 (474)
T PRK07168 242 AWKERKPLH-GK---KVLFTSATNKTSVMKQKLQEAGAEIY-QIPT-----FKKE--------EYTLTLEQINEIFNVDR 303 (474)
T ss_pred CCCCCCCCC-CC---EEEECCCHHHHHHHHHHHHHCCCCEE-EECC-----CCCC--------CCCHHHHHHHHHCCCCE
T ss_conf 753568878-86---79977866776999999997699389-9445-----3168--------85637999875333898
Q ss_pred HCCCCCCCCCCCHHHHHHH
Q ss_conf 0024743000372899999
Q gi|254780336|r 260 VYFARPDSIISGRSIYVSR 278 (488)
Q Consensus 260 IYFarpdS~~~g~~Vy~~R 278 (488)
+-|.-+ ||+...-.|
T Consensus 304 lvFTS~----NgV~~Ff~~ 318 (474)
T PRK07168 304 LVFCSA----ESVEILMQS 318 (474)
T ss_pred EEEECH----HHHHHHHHH
T ss_conf 999387----899999999
No 210
>PRK01295 phosphoglyceromutase; Provisional
Probab=32.45 E-value=33 Score=14.25 Aligned_cols=123 Identities=14% Similarity=0.239 Sum_probs=58.7
Q ss_pred EHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHCC---CCE--EHHE--------
Q ss_conf 0100247430003728999999999999874865677201200--120477999999819---960--0100--------
Q gi|254780336|r 258 EYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIP--DGGVPAAIGYAKESG---IPF--EQGI-------- 322 (488)
Q Consensus 258 EyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VP--dsg~~aA~gya~~~g---ip~--~~~l-------- 322 (488)
+-.|-.+.|+-+...-..+++. +|+.|.++ .+..|+|...| -+-.+ |.-.++++| +|. .+.|
T Consensus 18 ~~r~qG~~D~~Lte~G~~QA~~-~~~~L~~~-~~~~d~iysSpL~RA~~T-A~~I~~~lg~~~~~v~~d~~LrE~~fG~w 94 (206)
T PRK01295 18 KNLFTGWRDPDLTEQGVAEAKA-AGRKLKAA-GLKFDIAFTSALSRAQHT-CQLILEELGQPGLETIRDQALNERDYGDL 94 (206)
T ss_pred CCCEECCCCCCCCHHHHHHHHH-HHHHHHHC-CCCCCEEEECCCHHHHHH-HHHHHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 3966389999969899999999-99999976-997788997812578999-99999982788998375575254775334
Q ss_pred ---E----CCCCC------CC---EEEECCHHH-HHHHHHH-C---CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf ---1----17653------21---011064467-7765320-1---3432455338932897403533333888999998
Q gi|254780336|r 323 ---I----RNHYV------GR---TFIEPSHHI-RAFGVKL-K---HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIR 381 (488)
Q Consensus 323 ---v----kn~y~------gR---tFI~p~~~~-R~~~v~~-K---~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr 381 (488)
. +.+|- +| .|-.|+-+. .+..-|. . -...+...+|++|++| --|.|+|.++..+.
T Consensus 95 EG~~~~ei~~~~~~~~~~~~~~~~~~~pP~GES~~~~~~Rv~~~~~~~i~~~~~~g~~VLvV----sHG~~iR~l~~~~~ 170 (206)
T PRK01295 95 SGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVA----AHGNSLRALIMVLD 170 (206)
T ss_pred CCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE----ECCHHHHHHHHHHC
T ss_conf 69989999986789999986534678995961399999998899999999998779969999----58579999999980
Q ss_pred HCCCCE
Q ss_conf 539978
Q gi|254780336|r 382 SAGASE 387 (488)
Q Consensus 382 ~aGa~e 387 (488)
...+.+
T Consensus 171 gl~~e~ 176 (206)
T PRK01295 171 GLTPEQ 176 (206)
T ss_pred CCCHHH
T ss_conf 989899
No 211
>KOG4500 consensus
Probab=31.83 E-value=34 Score=14.18 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=32.5
Q ss_pred HHCCCCCCCCCCCHHHHHHHH----HHHHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHHHHH
Q ss_conf 100247430003728999999----999999874865677-------------2012001204779999998
Q gi|254780336|r 259 YVYFARPDSIISGRSIYVSRR----NMGKNLAKESPVIAD-------------IVVPIPDGGVPAAIGYAKE 313 (488)
Q Consensus 259 yIYFarpdS~~~g~~Vy~~R~----~lG~~La~~~~~~~D-------------iV~~VPdsg~~aA~gya~~ 313 (488)
-=-|||-|+. -+|-+.+ ++=..|+++..++.| .+||||+-+-.+-.|..++
T Consensus 339 igNfaR~D~~----ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvtea 406 (604)
T KOG4500 339 IGNFARRDDI----CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEA 406 (604)
T ss_pred HHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHH
T ss_conf 8766403269----9999988899999999987468886504599999999732464774643053112999
No 212
>PRK05637 anthranilate synthase component II; Provisional
Probab=31.53 E-value=34 Score=14.14 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=3.6
Q ss_pred HCCEEEEEEE
Q ss_conf 3043999963
Q gi|254780336|r 169 QGAYAMLALT 178 (488)
Q Consensus 169 ~Gayslv~l~ 178 (488)
.|..+.+..+
T Consensus 101 HG~~s~i~~~ 110 (208)
T PRK05637 101 HGTTDNMILT 110 (208)
T ss_pred CCEEEEEEEC
T ss_conf 5506678987
No 213
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=31.45 E-value=34 Score=14.13 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=22.4
Q ss_pred HCCCCEEE--EEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 33893289--74035333338889999985399
Q gi|254780336|r 355 LAGKRVVL--IDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 355 i~gk~vvl--vDDSIVRGtT~k~iv~~lr~aGa 385 (488)
+++..++- .+++|+.|+|-+.+++++++.|-
T Consensus 194 vk~~~l~TP~~~~~iL~GItR~~viela~~~gi 226 (299)
T PRK12479 194 VKDGKVLTPPSYLGALEGITRNSVIELCERLSI 226 (299)
T ss_pred EECCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 989999959863587547799999999998699
No 214
>PHA02135 hypothetical protein
Probab=31.33 E-value=28 Score=14.70 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=17.5
Q ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHC
Q ss_conf 178707999408984799875307765664200000100
Q gi|254780336|r 223 VENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVY 261 (488)
Q Consensus 223 v~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIY 261 (488)
=.||||++++.-++ .....+|.||--|
T Consensus 87 ~npg~il~iev~g~------------~~s~~p~~~~m~y 113 (122)
T PHA02135 87 ENPGKILVIEVVGD------------AKSEKPCQLEMQY 113 (122)
T ss_pred CCCCCEEEEEEECC------------CCCCCCCHHHHHH
T ss_conf 29984799998458------------6657870357666
No 215
>KOG3985 consensus
Probab=31.26 E-value=34 Score=14.11 Aligned_cols=107 Identities=21% Similarity=0.322 Sum_probs=54.7
Q ss_pred EEEECCCCEEEEEEE---CCCCEEEEEEEECCC-CCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 123317870799940---898479987530776-5664200000100247430003728999999999999874865677
Q gi|254780336|r 219 YIRDVENGETIVCEL---QEDGFISIDSYKNPS-TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD 294 (488)
Q Consensus 219 ~irdv~PGEiivi~~---~~~g~~~i~~~~~~~-~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D 294 (488)
.-.+|+||.+|+.+. ...| +. ..|...+ ..+.-.| +|=|.-| +....+++=...++.|-.-.--+..
T Consensus 98 Lre~I~Pgd~v~p~q~IDrTt~-R~-~tffdg~~~~a~gVc---Hv~~~~p----f~~k~reil~~~a~~l~~~~hd~~t 168 (283)
T KOG3985 98 LREEIKPGDFVLPDQIIDRTTG-RP-STFFDGSYDQAGGVC---HVPFGPP----FSQKLREILISTAKELTNPHHDDGT 168 (283)
T ss_pred CCCCCCCCCEECCHHHHHHHCC-CC-CCCCCCCCCCCCCEE---ECCCCCC----CCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 4345898667563455444336-75-311157545788267---6167887----2789999999998872687678536
Q ss_pred CCC-CCC--------------------CCHHHHHHHHHHHCCCCEEHHEECCCC-CCCEEEEC
Q ss_conf 201-200--------------------120477999999819960010011765-32101106
Q gi|254780336|r 295 IVV-PIP--------------------DGGVPAAIGYAKESGIPFEQGIIRNHY-VGRTFIEP 335 (488)
Q Consensus 295 iV~-~VP--------------------dsg~~aA~gya~~~gip~~~~lvkn~y-~gRtFI~p 335 (488)
+|+ --| -|-+|-| -.|++.||||..--+..-| .+|-=-.|
T Consensus 169 vVciEGPrFStRAES~mfR~wGa~vINMt~iPE~-~LAkEagi~Y~~iamaTDYDcWr~~ee~ 230 (283)
T KOG3985 169 VVCIEGPRFSTRAESKMFRSWGASVINMTVIPEA-KLAKEAGIPYQMIAMATDYDCWRMEEEP 230 (283)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEECHHH-HHHHHCCCCHHHHEECCCHHHHHCCCCC
T ss_conf 9985178654178888998745153322205087-8877628615551000234566445777
No 216
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=31.08 E-value=35 Score=14.09 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3533333888999998539978999
Q gi|254780336|r 366 SIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 366 SIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
++|.......++..|+++||+-|-+
T Consensus 69 ~vv~~~~~~~~i~~Lk~~GA~~Ilv 93 (100)
T TIGR03455 69 AVVDEKVVNELIDKLKAAGARDILV 93 (100)
T ss_pred EEEEHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9975799999999999879977999
No 217
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=31.08 E-value=35 Score=14.09 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCEEH-HEECCCCCCCEEEECCHHHHHHHH-HH
Q ss_conf 37289999999999998748656772012001204779999998-1996001-001176532101106446777653-20
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKE-SGIPFEQ-GIIRNHYVGRTFIEPSHHIRAFGV-KL 346 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~-~gip~~~-~lvkn~y~gRtFI~p~~~~R~~~v-~~ 346 (488)
-|.++.+.-+-+... .+++ +|+-.++.+.+. .+|+. +..|.-- |. | ..=-|+|.+=+..- +.
T Consensus 86 kgEsi~DTa~vls~~-----~~d~-iv~R~~~~~~~~--~la~~~s~~pvINag~------~-~~~HP~QaLaDl~Ti~E 150 (310)
T PRK13814 86 KGETLFDTIKTLEAM-----GVYF-FIVRHSENETPE--QIAKQLSSGVVINAGD------G-NHQHPSQALIDLMTIKQ 150 (310)
T ss_pred CCCCHHHHHHHHHHC-----CCEE-EEEECCCCCHHH--HHHHHCCCCCEEECCC------C-CCCCCHHHHHHHHHHHH
T ss_conf 797789999998741-----8569-999768744899--9997178887476878------9-87771699998999999
Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCE
Q ss_conf 13432455338932897403533333888999998539978999965898058865650
Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGI 405 (488)
Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGi 405 (488)
+ +..++|++|..|-| +-.+++...++..+...|+.+ +++++|+-..|...+-
T Consensus 151 ~----~g~~~~l~ia~vGD-~~~~~va~Sl~~~~~~~g~~~--~~~~~P~~~~p~~~~~ 202 (310)
T PRK13814 151 H----KPHWNKLCVTIIGD-IRHSRVANSLMDGLVTMGVPE--IRLVGPSSLLPDKVGN 202 (310)
T ss_pred H----CCCCCCCEEEEECC-CCCCHHHHHHHHHHHHCCCCC--EEECCCHHHCCHHHCC
T ss_conf 8----39713566899677-424699999999999759983--5852800219166708
No 218
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=30.68 E-value=35 Score=14.05 Aligned_cols=89 Identities=20% Similarity=0.254 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHCCCCEEHHEECCCCCC----CEEE--------EC-CH---HHHHHHHHHCCCCCHHHHCCCCEEEE
Q ss_conf 012047799999981996001001176532----1011--------06-44---67776532013432455338932897
Q gi|254780336|r 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVG----RTFI--------EP-SH---HIRAFGVKLKHSANRTILAGKRVVLI 363 (488)
Q Consensus 300 Pdsg~~aA~gya~~~gip~~~~lvkn~y~g----RtFI--------~p-~~---~~R~~~v~~K~~~~~~~i~gk~vvlv 363 (488)
|.++..+|..+-+.-|+||... +..+| ..|+ .+ .+ ++|.+.+. .+......+.|||+.+.
T Consensus 234 ~~~~~~~a~~Le~~~giP~~~~---~~P~G~~~Td~flr~l~~~~g~~~~~~i~~er~r~~d-~~~d~~~~l~gkrvai~ 309 (435)
T cd01974 234 EYATEKTAKFLEKKCKVPVETL---NMPIGVAATDEFLMALSELTGKPIPEELEEERGRLVD-AMTDSHQYLHGKKFALY 309 (435)
T ss_pred HHHHHHHHHHHHHHHCCCEEEE---CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCEEEEE
T ss_conf 7789999999999859986960---7764569999999999998589946999999999999-99999887429679998
Q ss_pred EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 403533333888999998539978999965898
Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-|+ +..-.+++.|.|.|..=+.+...+++
T Consensus 310 g~~----~~~~~l~~~l~elG~~~~~vv~~~~~ 338 (435)
T cd01974 310 GDP----DFLIGLTSFLLELGMEPVHVLTGNGG 338 (435)
T ss_pred CCH----HHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 882----89999999999889978999979997
No 219
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.32 E-value=28 Score=14.74 Aligned_cols=37 Identities=22% Similarity=0.484 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC--CCCCEECCCHHHH
Q ss_conf 9999985399789999658980588--6565005897888
Q gi|254780336|r 376 IVQMIRSAGASEVHLRVASPMVLYP--DFYGIDIPDPTAL 413 (488)
Q Consensus 376 iv~~lr~aGa~evh~ri~sPpi~~p--c~yGid~p~~~eL 413 (488)
-.|+|++.|.+++-+.+.+|. +++ .=||+.+-.+--|
T Consensus 337 GAQIL~dLGI~kirLLTNnP~-K~~gL~GfGLeIve~vpl 375 (400)
T PRK09311 337 GAQILRDLGVRKMRLLTNNPR-KFAGLSGYGLEVTERVPL 375 (400)
T ss_pred HHHHHHHCCCCCEEEECCCCH-HHHHHHHCCCEEEEEEEC
T ss_conf 999999869991799579812-242352179889899856
No 220
>pfam08665 PglZ PglZ domain. This family is a member of the Alkaline phosphatase clan.
Probab=30.29 E-value=36 Score=14.00 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHCCCC
Q ss_conf 2047799999981996
Q gi|254780336|r 302 GGVPAAIGYAKESGIP 317 (488)
Q Consensus 302 sg~~aA~gya~~~gip 317 (488)
|.+|.+-.|++++=.|
T Consensus 38 ~~LPs~T~~gm~allp 53 (176)
T pfam08665 38 GVLPSYTQLGMAALLP 53 (176)
T ss_pred HCCCCHHHHHHHHHCC
T ss_conf 4187452778998589
No 221
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=30.29 E-value=36 Score=14.00 Aligned_cols=70 Identities=13% Similarity=-0.006 Sum_probs=38.5
Q ss_pred CCCCCCCCCHHHH-HHHHHHHCCCCEEHHEE----CCCCCCCEEEECCHHHHHHHHHHCCCCCHH-HHCCCCEEEE
Q ss_conf 7201200120477-99999981996001001----176532101106446777653201343245-5338932897
Q gi|254780336|r 294 DIVVPIPDGGVPA-AIGYAKESGIPFEQGII----RNHYVGRTFIEPSHHIRAFGVKLKHSANRT-ILAGKRVVLI 363 (488)
Q Consensus 294 DiV~~VPdsg~~a-A~gya~~~gip~~~~lv----kn~y~gRtFI~p~~~~R~~~v~~K~~~~~~-~i~gk~vvlv 363 (488)
=||+||--||-.. |...|+.+|.||.+|=- .|.-.=+.=|.-+++.|..-...=-..+.. .-+|...|+.
T Consensus 6 ~VVmGVsGsGKSTvg~~LA~~L~~~fiegDd~Hp~~Ni~KM~~GiPL~D~DR~pWL~~l~~~~~~~~~~~~~~Vva 81 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV 81 (176)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9998289899899999999995987762344378989999868999886679999999999999999649982997
No 222
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=30.07 E-value=36 Score=13.98 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=37.5
Q ss_pred CCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99600100117653210110644677765320134324553389328974035333338889999985399789999
Q gi|254780336|r 315 GIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 315 gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
.+|+.+.+-.+ ...+..+.+.++..+..-++ .+-+++.||+.|++ .+...-++.-+|+.+|-+.|.+-
T Consensus 44 ~~~~~~~~~~~-~~~~~~l~~~~~l~~~l~~~------GI~~~~~VV~Y~~~--~~~~a~r~~w~L~~~G~~~V~iL 111 (122)
T cd01448 44 FFDLDEDLDDK-SPGPHMLPSPEEFAELLGSL------GISNDDTVVVYDDG--GGFFAARAWWTLRYFGHENVRVL 111 (122)
T ss_pred ECCCHHHHCCC-CCCCCCCCCHHHHHHHHHHH------CCCCCCEEEEEECC--CCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 64506441689-99887788989999999980------98889759998089--87389999999998399876892
No 223
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.95 E-value=36 Score=13.96 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=15.1
Q ss_pred EEECCCCEEEEEEECCCCEE
Q ss_conf 23317870799940898479
Q gi|254780336|r 220 IRDVENGETIVCELQEDGFI 239 (488)
Q Consensus 220 irdv~PGEiivi~~~~~g~~ 239 (488)
..+...|++++-+++.||..
T Consensus 157 ~~~~g~~~il~TdI~rDGtl 176 (234)
T PRK13587 157 LSDIPLGGIIYTDIAKDGKM 176 (234)
T ss_pred HHHCCCCEEEEECCCCCCCC
T ss_conf 97439878998402665745
No 224
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=29.76 E-value=36 Score=13.94 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=36.6
Q ss_pred EEEEEEEECCHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHH--CCCCCCHHHHHHHHHHHCCEEEEE
Q ss_conf 999965508789999999864982--42343078988989873--025670568999986530439999
Q gi|254780336|r 112 AIAHNGNFTNGLTLRKKLISSGAI--FQSTSDTEVILHLIARS--QKNGSCDRFIDSLRHVQGAYAMLA 176 (488)
Q Consensus 112 aiaHNGnI~N~~eLr~~L~~~g~~--f~s~sDTEvI~~Li~~~--~~~~~~e~i~~~l~~l~Gayslv~ 176 (488)
-+|+-|..| .+|+++++.-+|-. +-.|||---+.+.|..- ...-..|++..=+.+.-|+.|.|+
T Consensus 224 ~lCySGkyT-~~E~kKkI~G~GGl~ayLGTnD~reV~~~I~~GD~kA~~ildAMaYQiAKeIG~mavVL 291 (353)
T TIGR02707 224 DLCYSGKYT-KEEMKKKIVGKGGLVAYLGTNDAREVEKKIEAGDEKAKLILDAMAYQIAKEIGKMAVVL 291 (353)
T ss_pred HHHHCCCHH-HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 987276103-88999985267453325455888899999973108899999865458756774250400
No 225
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=29.74 E-value=36 Score=13.94 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=26.8
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3893289740353333388899999853997899996
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
++++|||+.+| |..++.....|+++|-++|++..
T Consensus 48 ~~~~vVl~c~~---g~~A~~AA~~L~~~g~~~V~~L~ 81 (145)
T cd01535 48 AAERYVLTCGS---SLLARFAAADLAALTVKPVFVLE 81 (145)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHHHCCCCCEEECC
T ss_conf 88877999489---56999999999855554478874
No 226
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF; InterPro: IPR004421 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins , , . Members of the HypF family are accessory proteins involved in hydrogenase maturation. They contain the following domains: acylphosphatase, zinc fingers (2 repeats), a YrdC-like domain, and a C-terminal domain with a putative O-carbamoyltransferase motif. The presence of CO and CN- ligands of the active site iron atoms is essential for [NiFe]-hydrogenase enzyme activity . Both ligands have been suggested to originate from carbamoylphosphate , which is required for maturation of [NiFe]-hydrogenases . Escherichia coli HypF interacts with carbamoylphosphate as a substrate and releases inorganic phosphate . In addition, HypF also cleaves ATP into AMP and pyrophosphate in the presence of carbamoylphosphate. This, and the fact that HypF catalyzes a carbamoylphosphate-dependent pyrophosphate ATP exchange reaction, suggest that the protein catalyzes the activation of carbamoylphosphate . The mechanism of action of HypF, as well as of its individual domains, is not yet clear. Mutations in any of the three major signature motifs, the acylphosphatase, the zinc fingers, and the O-carbamoyltransferase motif, can block carbamoylphosphate phosphatase activity. This indicates an integrated cooperativity between these domains in the cleavage reaction . The N-terminal acylphosphatase (ACP) domain is thought to support the conversion of carbamoylphosphate into CO and CN- , . Biochemical results demonstrating its ACP activity are not available , . ACPs are small enzymes that specifically catalyze the hydrolysis of carboxylphosphate bonds in acylphosphates, including carbamoylphosphate . Zinc fingers have been implicated in bivalent cation binding or as part of a chaperone domain interacting with the large subunit precursor, but experimental studies on such a function are lacking thus far. The YrdC-like domain is present in protein families with regulatory functions (IPR012200 from INTERPRO, IPR010923 from INTERPRO) and has been implicated in RNA binding . It is not clear what function it may have in members of the HypF family. A C-terminal domain is distantly related to peptidase M22, but contains a conserved O-carbamoyltransferase motif required for the carbamoylphosphate phosphatase activity . The function of this domain is not clear. Nomenclature note: the following names are used as synonyms of HypF: HupY in Azotobacter chroococcum, HupN in Rhizobium leguminosarum, HydA in Escherichia coli. In other organisms, these names are used to designate various "hydrogenase cluster" proteins unrelated to the members of this family. ; GO: 0030528 transcription regulator activity.
Probab=29.60 E-value=12 Score=17.43 Aligned_cols=201 Identities=18% Similarity=0.198 Sum_probs=99.7
Q ss_pred ECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHH
Q ss_conf 26956999861200104787412331787079994089847998753077656642000001002474300037289999
Q gi|254780336|r 198 ELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVS 277 (488)
Q Consensus 198 ~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~ 277 (488)
+..++-++|-..-||.. -+.+++-|.||-|+ +-|-.++- |- + -|+.-|..-
T Consensus 187 ~~~~~~vIae~~~al~~----a~~~L~~G~IiAiK--GiGGfHL~------------C~------a-----~~~~~V~~L 237 (799)
T TIGR00143 187 VSRGGEVIAEKDDALKE----AAKLLKKGKIIAIK--GIGGFHLA------------CD------A-----RDDEVVERL 237 (799)
T ss_pred ECCCCEEEECCCHHHHH----HHHHHCCCCEEEEE--CCCCEEEE------------EC------C-----CCHHHHHHH
T ss_conf 21687167527736899----99984079779985--68644886------------53------8-----864899999
Q ss_pred HHHHHHHH----------------HH----H--------CCC-----CCC-------CCCCC-------CCCHHHHHHHH
Q ss_conf 99999999----------------87----4--------865-----677-------20120-------01204779999
Q gi|254780336|r 278 RRNMGKNL----------------AK----E--------SPV-----IAD-------IVVPI-------PDGGVPAAIGY 310 (488)
Q Consensus 278 R~~lG~~L----------------a~----~--------~~~-----~~D-------iV~~V-------Pdsg~~aA~gy 310 (488)
|.++||=. |+ | .|+ +.| |+-+- |=|++-+=+ +
T Consensus 238 R~~k~RP~kPfAvM~~~l~~~~~~A~~~~~E~~~L~S~aaPIVl~~Kk~dy~~~~~~iAp~l~~iGVMLPYtPLHhLL-L 316 (799)
T TIGR00143 238 RLRKNRPAKPFAVMSPDLESIEEHAELNNLEKELLLSPAAPIVLLRKKKDYIKLFENIAPNLDTIGVMLPYTPLHHLL-L 316 (799)
T ss_pred HHHCCCCCCCCEECCCCCCCHHHHHCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHH-H
T ss_conf 864578897514415302001555055868998511664776776157574435601167969325864886457898-6
Q ss_pred HHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEE-EEHHHHHHHHHHH-HHHHHHHCCCCEE
Q ss_conf 9981996001001176532101106446777653201343245533893289-7403533333888-9999985399789
Q gi|254780336|r 311 AKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVL-IDDSIVRGTTSVK-IVQMIRSAGASEV 388 (488)
Q Consensus 311 a~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvl-vDDSIVRGtT~k~-iv~~lr~aGa~ev 388 (488)
-+.+..||.. =--|..-.=-+|- ..+.--+|..++.--++-+++||- |||||||=---+. .++.=|=.-+.-+
T Consensus 317 ~~~~~~p~Vm-TSaNl~G~P~~id----n~~~l~~L~gIaDgFL~HnR~Iv~R~DDSVV~~V~g~~~~lRRsRGyaP~p~ 391 (799)
T TIGR00143 317 QELLAKPLVM-TSANLPGEPMAID----NEEILEKLQGIADGFLVHNRRIVNRVDDSVVKEVAGELLFLRRSRGYAPEPL 391 (799)
T ss_pred HHHCCCCEEE-ECCCCCCCCCCCC----HHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCC
T ss_conf 7622777166-0267889888657----7999886122415000036100585876427644782102343047688600
Q ss_pred EEEECCCCCCCCCCCCEECCCHHHHHHCCC------------CCHHHHHHHHCCCEEEEECH-HHHHHHHC
Q ss_conf 999658980588656500589788854669------------99889998709977888339-89998611
Q gi|254780336|r 389 HLRVASPMVLYPDFYGIDIPDPTALLANKC------------SSPQEMCNFIGVDSLGFLSV-DGLYNAIC 446 (488)
Q Consensus 389 h~ri~sPpi~~pc~yGid~p~~~eLia~~~------------~~~eei~~~igadsl~yls~-e~l~~ai~ 446 (488)
-+ |-- .+++...+||-.. .++-=+.++||=.|- |-+. ..+++||.
T Consensus 392 ~l---------P~~---s~~~~~~~LalGa~l~~t~~llk~~~si~~lSQh~Gdls~-~~t~n~~fkeA~~ 449 (799)
T TIGR00143 392 KL---------PKR---SVKNQKKILALGAELKNTFALLKGGQSIAYLSQHIGDLSK-YETYNKFFKEAVN 449 (799)
T ss_pred CC---------CCC---CCCCCCCEEEECCCCCCEEEEEECCCEEEEECCCCCCCCC-CHHHHHHHHHHHH
T ss_conf 07---------865---4578865798777542238998668348997355256556-3035688999999
No 227
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.59 E-value=36 Score=13.92 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 3388899999853997
Q gi|254780336|r 371 TTSVKIVQMIRSAGAS 386 (488)
Q Consensus 371 tT~k~iv~~lr~aGa~ 386 (488)
++++.|...|-.+++-
T Consensus 312 ~~~k~I~~~l~~a~~~ 327 (354)
T COG2845 312 YLEKPIRAELETARPG 327 (354)
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9899998644026766
No 228
>TIGR00380 cobD cobalamin biosynthesis protein CobD; InterPro: IPR004485 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon .; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane.
Probab=29.53 E-value=33 Score=14.21 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=25.1
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEE-----HHEECCCC
Q ss_conf 2012001204779999998199600-----10011765
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFE-----QGIIRNHY 327 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~-----~~lvkn~y 327 (488)
.=.|.||||-+-|. +|..+|+..+ +|..|-.-
T Consensus 249 ~~~PSPNSG~~~A~-~A~~L~v~LeGdnyk~G~y~l~~ 285 (322)
T TIGR00380 249 RKVPSPNSGYTMAA-LAAALGVQLEGDNYKPGVYKLGD 285 (322)
T ss_pred CCCCCCCCHHHHHH-HHHHCCCEECCCCCCCCEEECCC
T ss_conf 88937986689999-99870631068430355424788
No 229
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=28.94 E-value=16 Score=16.48 Aligned_cols=12 Identities=50% Similarity=0.836 Sum_probs=8.7
Q ss_pred CEEEEEEEEEEC
Q ss_conf 719999965508
Q gi|254780336|r 109 GGIAIAHNGNFT 120 (488)
Q Consensus 109 g~iaiaHNGnI~ 120 (488)
|.++|||||.|.
T Consensus 292 GEiSLAhnGvLF 303 (505)
T TIGR00368 292 GEISLAHNGVLF 303 (505)
T ss_pred CCEEHHCCCCHH
T ss_conf 512020054104
No 230
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=28.73 E-value=38 Score=13.82 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=26.8
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 553389328974035333338889999985399789999
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
..-+++.||+.+++ |..+......|+++|-+.|.+.
T Consensus 52 ~~~~~~~vi~yc~~---g~~s~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 52 GLDKDKPVVVYCRS---GNRSAKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCCCCEEEEECCC---CCCHHHHHHHHHHCCCCCEEEE
T ss_conf 55799849998799---9806999999998089887980
No 231
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=28.41 E-value=38 Score=13.78 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=26.2
Q ss_pred HCCCCEEE--EEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 33893289--7403533333888999998539978999
Q gi|254780336|r 355 LAGKRVVL--IDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 355 i~gk~vvl--vDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
++|..++- .++.|+.|.|-+.+++++++.|- +|+-
T Consensus 202 vk~~~l~TP~l~~~iL~GITR~~viela~~~gi-~V~E 238 (306)
T PRK06606 202 VRDGVLYTPPITSSILEGITRDTVIELAKDLGI-EVIE 238 (306)
T ss_pred EECCEEECCCCCCCCCCCHHHHHHHHHHHHCCC-EEEE
T ss_conf 979968647730478988589999999997699-0799
No 232
>pfam04452 Methyltrans_RNA RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Probab=28.39 E-value=38 Score=13.78 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=5.3
Q ss_pred CCCCEEEEEEEEC
Q ss_conf 5887027999979
Q gi|254780336|r 40 RGQEATGIISFNG 52 (488)
Q Consensus 40 RGqdsaGIa~~d~ 52 (488)
|=+.+-=|-++|+
T Consensus 16 R~k~gd~i~v~dg 28 (225)
T pfam04452 16 RLKEGDEIKLFDG 28 (225)
T ss_pred CCCCCCEEEEEEC
T ss_conf 5899999999979
No 233
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=28.27 E-value=38 Score=13.78 Aligned_cols=47 Identities=30% Similarity=0.516 Sum_probs=26.9
Q ss_pred EEEEEHHCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 00000100247---------4300037289999999999998748656772012001204
Q gi|254780336|r 254 MCIFEYVYFAR---------PDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGV 304 (488)
Q Consensus 254 ~C~FEyIYFar---------pdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~ 304 (488)
.|.|-||=..- .|-.+|++-.|. .|..--.-.-+++|+|+|||=|..
T Consensus 115 ~C~~k~iDLGIAlGsA~~~a~dl~iDnRiMYs----iG~AAr~~gmiDADVvmGiPLS~t 170 (182)
T COG4739 115 NCMFKYIDLGIALGSAAKVAKDLCIDNRIMYS----IGAAARKLGMIDADVVMGIPLSAT 170 (182)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 04334433315550788888775021357778----878888727734353541310013
No 234
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=27.56 E-value=39 Score=13.68 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH----HHHHHHHHCCC
Q ss_conf 99999999999987486567720120012047----79999998199
Q gi|254780336|r 274 IYVSRRNMGKNLAKESPVIADIVVPIPDGGVP----AAIGYAKESGI 316 (488)
Q Consensus 274 Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~----aA~gya~~~gi 316 (488)
+++.++.--.-|..-.--..|+|||+-=||+. +|+-||+.+|-
T Consensus 108 ~ED~~~~G~~dL~~i~lt~~DvvvgIaASGrTPYv~gaL~yAr~~Ga 154 (291)
T TIGR00274 108 AEDSEEAGANDLKNIRLTKNDVVVGIAASGRTPYVIGALEYARKLGA 154 (291)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 44235888999873225634768888178975789999999997078
No 235
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=27.54 E-value=39 Score=13.68 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.0
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4553389328974035333338889999985399789999
Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
.+.-+++.||++.. .|..+....+.|+++|-++|+..
T Consensus 51 ~~~~~~~~ivv~C~---~G~rs~~aa~~L~~~G~~~v~~L 87 (96)
T cd01444 51 GDLDRDRPVVVYCY---HGNSSAQLAQALREAGFTDVRSL 87 (96)
T ss_pred HHHCCCCCEEEEEC---CCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 98568981899808---96689999999998289833998
No 236
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=27.33 E-value=32 Score=14.31 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=16.2
Q ss_pred CCEEEEEEEEEECCHHHHHH
Q ss_conf 97199999655087899999
Q gi|254780336|r 108 VGGIAIAHNGNFTNGLTLRK 127 (488)
Q Consensus 108 ~g~iaiaHNGnI~N~~eLr~ 127 (488)
.-++++|+||.|+|-..+.+
T Consensus 32 LDRisLV~~GqiinK~~I~~ 51 (179)
T PRK11582 32 LDRITLVRRGQIVNKIAISR 51 (179)
T ss_pred HHHHEEEECCEEECHHHHHH
T ss_conf 45630223576553899876
No 237
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=26.88 E-value=14 Score=16.81 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=12.9
Q ss_pred EEEECCH--HCCCCCCCEEEECCCCEE
Q ss_conf 9986120--010478741233178707
Q gi|254780336|r 204 IFCSETC--ALEITGAKYIRDVENGET 228 (488)
Q Consensus 204 v~ASEs~--Al~~ig~~~irdv~PGEi 228 (488)
-||+|.. |-+.-|.=.--||.|-||
T Consensus 301 ~FAp~AkraaaeGrGGiiHiDIDPaeI 327 (593)
T TIGR00118 301 KFAPNAKRAAAEGRGGIIHIDIDPAEI 327 (593)
T ss_pred HHCHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 723165675414787369998537655
No 238
>COG1084 Predicted GTPase [General function prediction only]
Probab=26.85 E-value=41 Score=13.60 Aligned_cols=137 Identities=23% Similarity=0.237 Sum_probs=72.4
Q ss_pred HHCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHHHHHHCC---CCEEHHEECCC
Q ss_conf 100247430003728-----999999999999874865677----201200120477999999819---96001001176
Q gi|254780336|r 259 YVYFARPDSIISGRS-----IYVSRRNMGKNLAKESPVIAD----IVVPIPDGGVPAAIGYAKESG---IPFEQGIIRNH 326 (488)
Q Consensus 259 yIYFarpdS~~~g~~-----Vy~~R~~lG~~La~~~~~~~D----iV~~VPdsg~~aA~gya~~~g---ip~~~~lvkn~ 326 (488)
.=||+|-.|++..++ +-++|..|.+. -.++.| +|+|-||.|-..-+.--.... .||- .-.|.=
T Consensus 131 R~a~GR~aSiik~i~~~L~fL~~~r~~l~~L----P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YP-FTTK~i 205 (346)
T COG1084 131 RQAFGRVASIIKKIDDDLEFLRKARDHLKKL----PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYP-FTTKGI 205 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC-CCCCCE
T ss_conf 9998789999998627899999999998508----87799997389856998758999988754897667888-533654
Q ss_pred CCC-------------------CEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 532-------------------1011064467776532013432455338932897403533333888999998539978
Q gi|254780336|r 327 YVG-------------------RTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 (488)
Q Consensus 327 y~g-------------------RtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e 387 (488)
++| |.+=.-++-+|+... +++ .+.|.-+.++|=|---|-+.-.=+.++.+-...-
T Consensus 206 ~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~-----AL~-hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f 279 (346)
T COG1084 206 HVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL-----ALR-HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF 279 (346)
T ss_pred EEEEEECCCCEEEEECCCCCCCCCHHHHCHHHHHHHH-----HHH-HHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 6765504870589842886457885773689999999-----999-7428589997685002899999999999999853
Q ss_pred EEEEECCCCCCCCCCCCEECCCHHHH
Q ss_conf 99996589805886565005897888
Q gi|254780336|r 388 VHLRVASPMVLYPDFYGIDIPDPTAL 413 (488)
Q Consensus 388 vh~ri~sPpi~~pc~yGid~p~~~eL 413 (488)
+ +|+.-- .--+|+.+.+++
T Consensus 280 -----~-~p~v~V-~nK~D~~~~e~~ 298 (346)
T COG1084 280 -----K-APIVVV-INKIDIADEEKL 298 (346)
T ss_pred -----C-CCEEEE-EECCCCCCHHHH
T ss_conf -----8-876999-741012466678
No 239
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=26.71 E-value=41 Score=13.58 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=17.7
Q ss_pred CCE-EEEEECCCEEEEEECCHHCCC----CC-CC-EEEE--CCCCEEEE
Q ss_conf 541-599826956999861200104----78-74-1233--17870799
Q gi|254780336|r 191 IRP-LIMGELHGKPIFCSETCALEI----TG-AK-YIRD--VENGETIV 230 (488)
Q Consensus 191 iRP-L~~G~~~~~~v~ASEs~Al~~----ig-~~-~ird--v~PGEiiv 230 (488)
-.| |=+=-...+|..-.++..+.. .| ++ .+|. +.-|+.++
T Consensus 133 ~fppLPvEV~Pf~~~~~~~~l~~~~A~ll~Gl~~~~LR~~~v~~~~~~~ 181 (236)
T TIGR00021 133 KFPPLPVEVVPFAWKATARRLKLEKAVLLLGLGEPTLRKGKVNKGGPVV 181 (236)
T ss_pred ECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEE
T ss_conf 0686047880368078999899888765237712789533227980179
No 240
>TIGR01009 rpsC_bact ribosomal protein S3; InterPro: IPR005704 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes the bacterial type of ribosomal protein S3 and also and many chloroplast forms. Chloroplast and mitochondrial forms have large, variable inserts between conserved N-terminal and C-terminal domains. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=26.68 E-value=41 Score=13.58 Aligned_cols=80 Identities=28% Similarity=0.386 Sum_probs=48.7
Q ss_pred EEEEEEEEEECCHHHHHHHHHHC-C--CCC--------CCCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHH--HCCEEE
Q ss_conf 19999965508789999999864-9--824--------2343078988989873025--6705689999865--304399
Q gi|254780336|r 110 GIAIAHNGNFTNGLTLRKKLISS-G--AIF--------QSTSDTEVILHLIARSQKN--GSCDRFIDSLRHV--QGAYAM 174 (488)
Q Consensus 110 ~iaiaHNGnI~N~~eLr~~L~~~-g--~~f--------~s~sDTEvI~~Li~~~~~~--~~~e~i~~~l~~l--~Gaysl 174 (488)
.+.|--+|. |.+.|++.|... + ... +-..|..+++.-||..++. ++--+++.++... .|+
T Consensus 78 g~vIGkkG~--~iE~l~~~l~k~~~~~k~v~i~I~EVk~p~ldA~LvA~~IA~QlE~RVSFRrAmK~A~~~~~k~Ga--- 152 (217)
T TIGR01009 78 GIVIGKKGS--EIEKLKKALQKLTGSVKEVQINIKEVKRPELDAQLVAQNIARQLENRVSFRRAMKKAIQSAMKAGA--- 152 (217)
T ss_pred CEEECCCCC--HHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC---
T ss_conf 658857884--589999999988478358999898748857387889989999986202046899999999862689---
Q ss_pred EEEECCEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 9963997999982566541599826956999861
Q gi|254780336|r 175 LALTRTKLIATRDPIGIRPLIMGELHGKPIFCSE 208 (488)
Q Consensus 175 v~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASE 208 (488)
.|+|=.|=|+.+|.-+.=||
T Consensus 153 --------------kGiKv~VSGRLgGAEIAR~E 172 (217)
T TIGR01009 153 --------------KGIKVQVSGRLGGAEIARTE 172 (217)
T ss_pred --------------CEEEEEEEECCCCHHHCCCC
T ss_conf --------------88899986105742112221
No 241
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=26.50 E-value=41 Score=13.55 Aligned_cols=117 Identities=22% Similarity=0.352 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHH-H----------HCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEE------EEEE
Q ss_conf 336899999987-7----------3158870279999799699980487167631504443206876789------8751
Q gi|254780336|r 25 DAATLTAIGLHA-L----------QHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAI------GHVR 87 (488)
Q Consensus 25 ~~~~~~~~gL~~-L----------QHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~I------GHvR 87 (488)
...+.+.+++.. | .|-+.|--+|++.|++.- .+..|+|...+... .++...+++.| |-|=
T Consensus 126 ~TGQQLl~~~~~a~~r~~~~G~v~~y~~~e~ld~iv~d~~ge--k~arGi~arnL~Tg-e~~~~~adAVilAtGGyg~vF 202 (620)
T TIGR01811 126 QTGQQLLLAADSALRRQIAAGTVEKYERWEMLDIIVVDGDGE--KRARGIIARNLVTG-EIETFSADAVILATGGYGNVF 202 (620)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEECCCCC--CEEEEEEECCCCCC-HHHCCCCCEEEEECCCCHHHH
T ss_conf 627899999999998888627356641651688988758875--02200121024000-000003566898128860222
Q ss_pred C-CCCCCCCCCCCCCEEEECCCC------------EEEEEEEEEECCHHHHHH-HHHHCC-CCC--CCCCCHHHHH
Q ss_conf 2-226898600278678746997------------199999655087899999-998649-824--2343078988
Q gi|254780336|r 88 Y-STTGDQIIRNVQPLFADLQVG------------GIAIAHNGNFTNGLTLRK-KLISSG-AIF--QSTSDTEVIL 146 (488)
Q Consensus 88 Y-sT~G~~~~~n~QPf~~~~~~g------------~iaiaHNGnI~N~~eLr~-~L~~~g-~~f--~s~sDTEvI~ 146 (488)
| ||.. ...|+.|...-+..| .=+|-.+|+.-.-..|-. -|..+| .++ +..+|.+.+-
T Consensus 203 ~~sTna--~~sna~A~~~~Y~~Ga~fAnp~FiQiHPT~iP~~~~~QsKl~LMSESlRndGGRiW~pK~~~D~~~~~ 276 (620)
T TIGR01811 203 YLSTNA--MNSNASAAWRAYEQGAYFANPEFIQIHPTAIPVDGEFQSKLTLMSESLRNDGGRIWVPKEKNDDRDAN 276 (620)
T ss_pred HHHHCC--CCCHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHH
T ss_conf 212103--44215799999867914636713554672238888622257777465326986472468887431125
No 242
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=26.25 E-value=41 Score=13.52 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=26.2
Q ss_pred CCCCCCCCHHHH-HHHHHHHCCCCEEHHE----ECCCCCCCEEEECCHHHHHH
Q ss_conf 201200120477-9999998199600100----11765321011064467776
Q gi|254780336|r 295 IVVPIPDGGVPA-AIGYAKESGIPFEQGI----IRNHYVGRTFIEPSHHIRAF 342 (488)
Q Consensus 295 iV~~VPdsg~~a-A~gya~~~gip~~~~l----vkn~y~gRtFI~p~~~~R~~ 342 (488)
||+||--||... |...|+.+|.||.+|= -.|.-.=+.=|.-+++.|.-
T Consensus 12 VVMGVsGsGKSTig~~LA~~l~~~fiegDdfHp~~Ni~KM~~GiPLtD~DR~p 64 (177)
T PRK11545 12 VLMGVSGSGKSAVASAVAHQLHAAFLDGDFLHPRCNIEKMASGEPLNDDDRKP 64 (177)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 99847989999999999998199855365558999999862899998688899
No 243
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=26.17 E-value=42 Score=13.51 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=22.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 53389328974035333338889999985399789999658
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
+-.|..|+-||+--|++.+....+.++++++ ..|.+.+.-
T Consensus 44 l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~-~~v~l~v~r 83 (85)
T smart00228 44 LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG-GKVTLTVLR 83 (85)
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 9899999999999989998999999987799-979999994
No 244
>pfam03159 XRN_N XRN 5'-3' exonuclease N-terminus. This family aligns residues towards the N-terminus of several proteins with multiple functions. The members of this family all appear to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, the aligned region may be necessary for 5'-3' exonuclease function. The family also contains several Xrn1 and Xrn2 proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p function in the degradation and processing of several classes of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme catalysing cytoplasmic mRNA degradation in multiple decay pathways, whereas Xrn2p/Rat1p functions in the processing of rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus.
Probab=25.67 E-value=42 Score=13.45 Aligned_cols=48 Identities=29% Similarity=0.368 Sum_probs=32.9
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHC
Q ss_conf 289740353333388899999853997899996589805886565005897888546
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLAN 416 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~ 416 (488)
-|++-||=|-|--=-+|.+-+|...+.. ...|-..-|.||.|- +||.-
T Consensus 173 ~vi~S~s~~pGEGEHKI~~~IR~~~~~~-----~~~~n~~~~IyGlDA----DLImL 220 (236)
T pfam03159 173 TVILSDAEVPGEGEHKIMDFIRSQRAQP-----DYDPNTRHCLYGLDA----DLIML 220 (236)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCC-----CCCCCCCEEEECCCH----HHHHH
T ss_conf 9998389998872899999999724378-----889985189981588----99997
No 245
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=25.66 E-value=42 Score=13.45 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=7.2
Q ss_pred HHHHHHHHCCCEEEEECHHH
Q ss_conf 88999870997788833989
Q gi|254780336|r 421 PQEMCNFIGVDSLGFLSVDG 440 (488)
Q Consensus 421 ~eei~~~igadsl~yls~e~ 440 (488)
.+.|++.|- .+.|.++.|
T Consensus 300 ~~av~~AL~--~~~~~~~~G 317 (359)
T TIGR03407 300 VDAVRDAAI--GIEFDAPEG 317 (359)
T ss_pred HHHHHHHHH--CCCEECCCC
T ss_conf 999999972--797117950
No 246
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.51 E-value=36 Score=14.00 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=51.6
Q ss_pred HHHHHHHCCC---CCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf 9999874865---6772012001204779999998199600100117653210110644677765320134324553389
Q gi|254780336|r 282 GKNLAKESPV---IADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGK 358 (488)
Q Consensus 282 G~~La~~~~~---~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk 358 (488)
.+.|.++... .+-.-.|+ |.....-...|.+.|+ ..+ ..+.|...++..+-..++.++||
T Consensus 215 A~~L~~r~~~~~i~apFP~G~-eGT~~Wl~aiA~~Fg~-~~~---------------~l~~~~~ra~~~le~yr~~L~GK 277 (396)
T cd01979 215 ATTLMRRRKCKLLSAPFPIGP-DGTRAWLEAICSAFGI-FPS---------------VLAEREARAWRALEPYLDLLRGK 277 (396)
T ss_pred HHHHHHHCCCCEECCCCCCCC-CHHHHHHHHHHHHHCC-CHH---------------HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999997048862047898795-1499999999998398-565---------------42789999999999999983897
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 32897403533333888999998539978999
Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
+|.+.-||---= .+.+.|.++|..-|-|
T Consensus 278 ~vfF~pDsqLEI----pLARFL~rcGm~~vEV 305 (396)
T cd01979 278 SIFFMGDNLLEI----PLARFLTRCGMIVVEV 305 (396)
T ss_pred EEEECCCCCHHH----HHHHHHHHCCCEEEEE
T ss_conf 499818860240----4899999879878995
No 247
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=25.34 E-value=43 Score=13.41 Aligned_cols=87 Identities=28% Similarity=0.320 Sum_probs=48.7
Q ss_pred CCCC-CCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC----CEEEE------------------CCHHHHHHHHHHCC
Q ss_conf 6772-0120012047799999981996001001176532----10110------------------64467776532013
Q gi|254780336|r 292 IADI-VVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG----RTFIE------------------PSHHIRAFGVKLKH 348 (488)
Q Consensus 292 ~~Di-V~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g----RtFI~------------------p~~~~R~~~v~~K~ 348 (488)
++|+ |++-|+-|..+|.-..++.|.||... ..+| +-||. .......+..-..-
T Consensus 209 ~A~~Nv~lYrE~g~~aa~~Le~~fg~P~~~~----~PiGv~~T~~flrel~~~lg~~~~~~~~~i~~~~~~~s~~~W~sr 284 (524)
T PRK02910 209 AAWFNVVLYREIGESAAEYLEREFGMPYVTT----VPIGVGATARFIREVAELLNLDGADLEAFILDELSAPSRLPWFSR 284 (524)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHCCCEECC----CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEE
T ss_conf 0407464258777999999998858970103----475417999999999999689964225555442014233530121
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH-HCCCC
Q ss_conf 432455338932897403533333888999998-53997
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIR-SAGAS 386 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr-~aGa~ 386 (488)
++..+.+.||++++.-| +|-...+.++|+ |.|-+
T Consensus 285 SvD~~~ltgKr~fVfGD----aTha~a~~kil~~ElG~~ 319 (524)
T PRK02910 285 SVDSTYLTGKRVFVFGD----ATHAVAAAKILRDELGFE 319 (524)
T ss_pred CCCCHHHCCCEEEEECC----CHHHHHHHHHHHHHHCEE
T ss_conf 36501213644799656----079999999988864807
No 248
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=25.17 E-value=41 Score=13.57 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEE
Q ss_conf 86787469971999996550878999999986498242343078988989873025670568999986530439
Q gi|254780336|r 100 QPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 (488)
Q Consensus 100 QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Gays 173 (488)
+|+..=.......+.-.|+++|-. +..+. -+.-|.+.++++++.+.-.-++|.+++.+=+|+|.+=
T Consensus 9 rPl~l~~~~~~~~~~~~Gelt~~~-------~~~y~-~~~eD~~~~~~~~S~ySlYA~EeElk~GYITi~GGHR 74 (282)
T TIGR02858 9 RPLELVFDGEEVFVTTDGELTAES-------DSDYI-PTVEDVEAILQLISQYSLYAFEEELKQGYITIEGGHR 74 (282)
T ss_pred CCEEEEECCCCEEECCCCEEEECC-------CCCCE-ECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEE
T ss_conf 857998679527875882032058-------87713-0288899999987631245655765076078546726
No 249
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.05 E-value=44 Score=13.37 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 5333338889999985399789999
Q gi|254780336|r 367 IVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 367 IVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
||-|+|.+.|=+.|.++|-..=.+|
T Consensus 176 ~i~g~tr~~i~ral~rtGh~Rdv~r 200 (247)
T COG4044 176 IINGATREEIERALNRTGHGRDVVR 200 (247)
T ss_pred EEEHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9840108999999975057754575
No 250
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=24.94 E-value=44 Score=13.36 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=24.7
Q ss_pred HCCCCEEE--EEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 33893289--7403533333888999998539978999
Q gi|254780336|r 355 LAGKRVVL--IDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 355 i~gk~vvl--vDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
++|.+++- .+++|+.|+|-+.|++++++.|-+ |+-
T Consensus 184 v~~~~~~TP~l~~giL~GItR~~ii~l~~~~g~~-v~e 220 (270)
T cd01558 184 VKNGVLVTPPLDNGILPGITRATVIELAKELGIP-VEE 220 (270)
T ss_pred EECCEEEECCCCCCCCCCHHHHHHHHHHHHCCCC-EEE
T ss_conf 9758089787878938088999999999987993-899
No 251
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=24.92 E-value=44 Score=13.36 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEECC-EEEEEEE-CCCCCEEEEEECCCEEEEEECCHHCCCC
Q ss_conf 3430789889898730256705689999865304399996399-7999982-5665415998269569998612001047
Q gi|254780336|r 138 STSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRT-KLIATRD-PIGIRPLIMGELHGKPIFCSETCALEIT 215 (488)
Q Consensus 138 s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Gayslv~l~~~-~l~~~RD-p~GiRPL~~G~~~~~~v~ASEs~Al~~i 215 (488)
..+.||+.+-|++...-.......-..+++-+..|++-+..+. .++-+++ .....|-+|| .|.|-..|...+
T Consensus 83 ~~T~~El~AlLlE~~lIK~~~P~~Nr~lR~~~~l~si~l~~~~~~~v~~~~~d~~~~~~lyG------~F~S~r~A~~~L 156 (286)
T PRK10545 83 ICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLNEGRVDVVYAKEVDFSRAPNLFG------LFANRRAALQAL 156 (286)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCEEE------ECCCHHHHHHHH
T ss_conf 99699999999999999884886540124778752799856976145300036432543232------046899999999
No 252
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=24.75 E-value=44 Score=13.34 Aligned_cols=63 Identities=22% Similarity=0.411 Sum_probs=44.6
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCC-CCHHHHHHHHCCC
Q ss_conf 553389328974035333338889999985399789999658980588656500589788854669-9988999870997
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKC-SSPQEMCNFIGVD 431 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~-~~~eei~~~igad 431 (488)
..+.+|+|++|-= |.+.+.+++.|++.|+++|.+ +++. ..-+++++.+|+.
T Consensus 174 ~~l~~~~vLviGa----Gem~~l~~~~L~~~g~~~i~v------------------------~nRt~~ra~~la~~~g~~ 225 (311)
T cd05213 174 GNLKGKKVLVIGA----GEMGELAAKHLAAKGVAEITI------------------------ANRTYERAEELAKELGGN 225 (311)
T ss_pred CCCCCCEEEEECC----CHHHHHHHHHHHHCCCCEEEE------------------------ECCCHHHHHHHHHHCCCE
T ss_conf 8721167999868----799999999999659982599------------------------768678999999974989
Q ss_pred EEEEECHHHHHHHHC
Q ss_conf 788833989998611
Q gi|254780336|r 432 SLGFLSVDGLYNAIC 446 (488)
Q Consensus 432 sl~yls~e~l~~ai~ 446 (488)
..+++++.+.+.
T Consensus 226 ---~~~~~~l~~~l~ 237 (311)
T cd05213 226 ---AVPLDELLELLN 237 (311)
T ss_pred ---EECHHHHHHHHH
T ss_conf ---972999999997
No 253
>pfam02073 Peptidase_M29 Thermophilic metalloprotease (M29).
Probab=24.69 E-value=44 Score=13.33 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=12.3
Q ss_pred HHHHHHHHCCC--CCCCCCCHHHHHHHHH
Q ss_conf 99999986498--2423430789889898
Q gi|254780336|r 124 TLRKKLISSGA--IFQSTSDTEVILHLIA 150 (488)
Q Consensus 124 eLr~~L~~~g~--~f~s~sDTEvI~~Li~ 150 (488)
.|.++..+.|. .+..-+|.++-..++.
T Consensus 40 ~l~~~ay~~GA~~V~v~~~d~~~~r~~~~ 68 (404)
T pfam02073 40 ALVEEAYEAGAKNVVVEWSDDEITRARLE 68 (404)
T ss_pred HHHHHHHHCCCCCCEEEECCHHHHHHHHH
T ss_conf 99999997599975798277799999986
No 254
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=24.53 E-value=44 Score=13.31 Aligned_cols=104 Identities=24% Similarity=0.338 Sum_probs=51.2
Q ss_pred HHHHHHHHH-CCCCCCCCC-------CCCCCHHHHHHHHHHH-----------------------CCCCEEHHEECCCC-
Q ss_conf 999999874-865677201-------2001204779999998-----------------------19960010011765-
Q gi|254780336|r 280 NMGKNLAKE-SPVIADIVV-------PIPDGGVPAAIGYAKE-----------------------SGIPFEQGIIRNHY- 327 (488)
Q Consensus 280 ~lG~~La~~-~~~~~DiV~-------~VPdsg~~aA~gya~~-----------------------~gip~~~~lvkn~y- 327 (488)
|.|+..|-| ..+.+||++ |+|=++..+-..++.. +.+-.+++|..|-.
T Consensus 232 RTGk~fA~e~~gV~PDI~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~ 311 (404)
T COG4992 232 RTGKLFAYEHYGVEPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVRE 311 (404)
T ss_pred CCCHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66317898974888777886012458833235577426662478876567778679999999999999800308999999
Q ss_pred CCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEE---EEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 32101106446777653201343245533893289---7403533333888999998539978999965898
Q gi|254780336|r 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVL---IDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 328 ~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvl---vDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
.|--|+ + |...+..++. +-..|+|+-+++ .+++. +.+.+++.|++.| |-+..+.|-
T Consensus 312 ~g~~~~---~--~L~~l~~~~~-~v~~vRG~GLmiGiel~~~~----~a~~~~~~~~~~g---vL~~~a~~~ 370 (404)
T COG4992 312 KGEYLL---Q--RLRELKRRYP-LVKEVRGRGLMIGIELKEPY----RARDIVRALREEG---VLVLPAGPN 370 (404)
T ss_pred HHHHHH---H--HHHHHHHCCC-CEEEEECCEEEEEEEECCCC----CHHHHHHHHHHCC---EEEECCCCC
T ss_conf 999999---9--9999751277-21224215049999944764----5799999999789---699607888
No 255
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=24.36 E-value=45 Score=13.29 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=65.0
Q ss_pred CEEEEC-CHHHHHHHHHHCCCCCHHHHCCCCEEEEEHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---CCC
Q ss_conf 101106-4467776532013432455338932897403-53333388899999853997899996589805886---565
Q gi|254780336|r 330 RTFIEP-SHHIRAFGVKLKHSANRTILAGKRVVLIDDS-IVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPD---FYG 404 (488)
Q Consensus 330 RtFI~p-~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDS-IVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc---~yG 404 (488)
=||--. ....| .+|.-+-|.-.-++.+.-|.+---- +.=+-|.-.|.+.|+.-|+++|-+.+--|.- |.. .-|
T Consensus 507 GTy~HSG~LAIR-aaVAag~niTYKiLyNdAVAMTGGQ~~dG~l~v~~i~~ql~aeGv~~i~vvsddp~~-y~~~~~~~g 584 (1155)
T PRK09193 507 GTYFHSGLLAIR-AAVAAGVNITYKILYNDAVAMTGGQPVDGGLTVPQITRQLAAEGVKRIVVVTDEPEK-YRGARLAPG 584 (1155)
T ss_pred CCCCCCCHHHHH-HHHHCCCCEEEEEEECCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHH-CCCCCCCCC
T ss_conf 630203179999-999759973899985680421489888898899999999986797359999358553-563448999
Q ss_pred EECCCHHHHHHCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 005897888546699988999870997788833
Q gi|254780336|r 405 IDIPDPTALLANKCSSPQEMCNFIGVDSLGFLS 437 (488)
Q Consensus 405 id~p~~~eLia~~~~~~eei~~~igadsl~yls 437 (488)
+.+-.|++|.+.+ +|+++.-|++-|.|--
T Consensus 585 v~v~hRd~L~~vQ----~eLr~~~GvtvliydQ 613 (1155)
T PRK09193 585 VTVHHRDELDAVQ----RELREIPGVTVLIYDQ 613 (1155)
T ss_pred CCEECHHHHHHHH----HHHHHCCCCEEEEEHH
T ss_conf 8246487799999----9997378967999620
No 256
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=24.32 E-value=45 Score=13.28 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=25.6
Q ss_pred HCCCCEEE--EEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 33893289--7403533333888999998539978999
Q gi|254780336|r 355 LAGKRVVL--IDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 355 i~gk~vvl--vDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
++|..++- .++.|+-|+|-+.++++++++|- +|..
T Consensus 187 vk~~~l~TP~l~~giL~GItR~~vi~la~~~gi-~v~E 223 (290)
T PRK07650 187 VKGDVVYTPSLETGILNGITRAFIIKVLEELGI-EVKE 223 (290)
T ss_pred EECCEEEECCCCCCCCCCHHHHHHHHHHHHCCC-EEEE
T ss_conf 978999917865783818899999999997798-7999
No 257
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=24.31 E-value=23 Score=15.41 Aligned_cols=17 Identities=35% Similarity=0.823 Sum_probs=13.7
Q ss_pred HHEECCCCCCCEEEECC
Q ss_conf 10011765321011064
Q gi|254780336|r 320 QGIIRNHYVGRTFIEPS 336 (488)
Q Consensus 320 ~~lvkn~y~gRtFI~p~ 336 (488)
...+||+|-|||+|+|-
T Consensus 404 rp~~~~kvegrtYiQPQ 420 (591)
T COG5163 404 RPVMKNKVEGRTYIQPQ 420 (591)
T ss_pred CHHHHHHHCCEEEECHH
T ss_conf 26655432561362407
No 258
>pfam00925 GTP_cyclohydro2 GTP cyclohydrolase II. GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin.
Probab=23.96 E-value=46 Score=13.23 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=17.8
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 9999985399789999658980588
Q gi|254780336|r 376 IVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 376 iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
-.|+||+.|.+++.+.+.+|. +++
T Consensus 131 GAQIL~dLGV~km~LLsnsp~-k~~ 154 (169)
T pfam00925 131 GAQILRDLGVRKMRLLTNNPR-KIV 154 (169)
T ss_pred HHHHHHHCCCCEEEECCCCCH-HHH
T ss_conf 999999869986999279905-567
No 259
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=23.93 E-value=46 Score=13.23 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=42.4
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHH
Q ss_conf 20120012047799999981996001001176532101106446777653201343245533893289740353333388
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSV 374 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k 374 (488)
+|+-+-++.....-...-..+|||.....+.. ...+ .+.. +.-+.-|||-||+|+-+ |.+..
T Consensus 18 ~vvD~R~~~ef~~ghi~~siniPf~~~~~~~~----~L~~-~~~~----------~~Lek~Kgk~VViV~~~---g~~a~ 79 (105)
T cd01525 18 AAVDIRSSPDFRRGHIEGSINIPFSSVFLKEG----ELEQ-LPTV----------PRLENYKGKIIVIVSHS---HKHAA 79 (105)
T ss_pred EEEECCCHHHHCCCEECCCCCCCCHHHCCCCC----CCCC-CCCH----------HHHHHCCCCEEEEECCC---CCCHH
T ss_conf 99977787885466112755057302015544----2213-6425----------89997589829998899---86799
Q ss_pred HHHHHHHHCCCCEEEEE
Q ss_conf 89999985399789999
Q gi|254780336|r 375 KIVQMIRSAGASEVHLR 391 (488)
Q Consensus 375 ~iv~~lr~aGa~evh~r 391 (488)
...+.|.++|-..|.+.
T Consensus 80 ~fa~~Lvk~Gf~rVcvL 96 (105)
T cd01525 80 LFAAFLVKCGVPRVCIL 96 (105)
T ss_pred HHHHHHHHCCCCEEEEE
T ss_conf 99999998499869993
No 260
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=23.83 E-value=42 Score=13.49 Aligned_cols=29 Identities=34% Similarity=0.601 Sum_probs=18.6
Q ss_pred CCCCEEEEEHHHHH-------------------HHH---HHHHHHHHHHCC
Q ss_conf 38932897403533-------------------333---888999998539
Q gi|254780336|r 356 AGKRVVLIDDSIVR-------------------GTT---SVKIVQMIRSAG 384 (488)
Q Consensus 356 ~gk~vvlvDDSIVR-------------------GtT---~k~iv~~lr~aG 384 (488)
+||+|+|+=|||=| |=| -..|=+++-+||
T Consensus 246 qGk~VLL~~DSlTRFAmAqREigLa~GEPP~tkGYpPSVF~~Lp~L~ERaG 296 (439)
T TIGR02545 246 QGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFSELPRLLERAG 296 (439)
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 498347762117889989889998717876667897048999999998708
No 261
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.74 E-value=36 Score=13.98 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=15.2
Q ss_pred EEEECCCCEEEEEEECCCCEE
Q ss_conf 123317870799940898479
Q gi|254780336|r 219 YIRDVENGETIVCELQEDGFI 239 (488)
Q Consensus 219 ~irdv~PGEiivi~~~~~g~~ 239 (488)
.+.+...||+++-+++.||..
T Consensus 160 ~~~~~g~geil~TdI~rDGt~ 180 (253)
T PRK01033 160 QAEELGAGEIVLNSIDRDGVM 180 (253)
T ss_pred HHHHCCCCEEEEEEECCCCCC
T ss_conf 987469779999878488976
No 262
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=23.72 E-value=46 Score=13.20 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=29.8
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 553389328974035333338889999985399789999
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
....||+|++|-- |+|.--.++..++.||++|++.
T Consensus 574 p~~~Gk~VvVIGG----GntAmD~artA~RlGAe~V~iv 608 (760)
T PRK12778 574 PVAFGKNVAVIGG----GNTAMDSVRTAKRLGAERAMII 608 (760)
T ss_pred CCCCCCEEEEECC----CHHHHHHHHHHHHCCCCEEEEE
T ss_conf 4226988999999----7609999999998399869997
No 263
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.64 E-value=46 Score=13.19 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=38.6
Q ss_pred HHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH-HCCCCEEEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 477999999819960010011765321011064467776532013432455-3389328974035333338889999985
Q gi|254780336|r 304 VPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI-LAGKRVVLIDDSIVRGTTSVKIVQMIRS 382 (488)
Q Consensus 304 ~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~-i~gk~vvlvDDSIVRGtT~k~iv~~lr~ 382 (488)
..-|-..|++.|+||.. .-.|+-.++. ...|..+|...... =++-..+.|-- . +-+|.+.+-+++++
T Consensus 162 ~S~a~~iAk~~gVp~~~--------rdvfLD~e~~--~~~V~kql~~~~~~Ark~G~ai~IGh-~-~~~Tv~vl~~~~~~ 229 (250)
T COG2861 162 NSLAGKIAKEIGVPVIK--------RDVFLDDEDT--EAAVLKQLDAAEKLARKNGSAIGIGH-P-HKNTVAVLQQWLDE 229 (250)
T ss_pred CCHHHHHHHHCCCCEEE--------EEEEECCCCC--HHHHHHHHHHHHHHHHHCCCEEEECC-C-CHHHHHHHHHHHHH
T ss_conf 20206667633875234--------0133048678--99999999999999986694378548-8-66399999998875
Q ss_pred CCCCEEEEEEC
Q ss_conf 39978999965
Q gi|254780336|r 383 AGASEVHLRVA 393 (488)
Q Consensus 383 aGa~evh~ri~ 393 (488)
++|+.|-+.-.
T Consensus 230 l~~~gIelV~~ 240 (250)
T COG2861 230 LPARGIELVPV 240 (250)
T ss_pred CCCCCEEEECH
T ss_conf 78787488427
No 264
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.63 E-value=46 Score=13.19 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=15.5
Q ss_pred EECCCHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 005897888546699988999870997
Q gi|254780336|r 405 IDIPDPTALLANKCSSPQEMCNFIGVD 431 (488)
Q Consensus 405 id~p~~~eLia~~~~~~eei~~~igad 431 (488)
|.+|.-.+||-.+ + ..+|...|...
T Consensus 287 i~TpAvrnlIre~-K-~~qi~s~iqtG 311 (353)
T COG2805 287 INTPAVRNLIREG-K-THQIPSLIQTG 311 (353)
T ss_pred HCCHHHHHHHHCC-C-HHHHHHHHHHH
T ss_conf 4788899998448-5-88899999964
No 265
>TIGR00251 TIGR00251 conserved hypothetical protein TIGR00251; InterPro: IPR005228 This family of conserved hypothetical proteins has no known function..
Probab=23.57 E-value=46 Score=13.18 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=4.7
Q ss_pred EEEEEECCCCC
Q ss_conf 89999658980
Q gi|254780336|r 387 EVHLRVASPMV 397 (488)
Q Consensus 387 evh~ri~sPpi 397 (488)
+|-|+|.|||.
T Consensus 32 ~v~v~I~aPp~ 42 (91)
T TIGR00251 32 RVEVKIKAPPK 42 (91)
T ss_pred EEEEEEECCCC
T ss_conf 46787707798
No 266
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=23.54 E-value=46 Score=13.18 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=19.1
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 893289740353333388899999853997899996
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
.-+|++|||+-.-. +.+.++|++.|-.+|....
T Consensus 5 ~lrILivDD~~~~r---~~l~~~L~~~g~~~v~~a~ 37 (129)
T PRK10610 5 ELKFLVVDDFSTMR---RIVRNLLKELGFNNVEEAE 37 (129)
T ss_pred CCEEEEEECCHHHH---HHHHHHHHHCCCCEEEEEC
T ss_conf 98999997989999---9999999986997899989
No 267
>PRK07914 hypothetical protein; Reviewed
Probab=23.43 E-value=47 Score=13.17 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=12.1
Q ss_pred EEEEEEEEEECCHHHHHHHHHHCCCC
Q ss_conf 19999965508789999999864982
Q gi|254780336|r 110 GIAIAHNGNFTNGLTLRKKLISSGAI 135 (488)
Q Consensus 110 ~iaiaHNGnI~N~~eLr~~L~~~g~~ 135 (488)
.+.++|+|-- -.+.+.+.|.+.|..
T Consensus 96 ~LV~~h~gg~-k~Kkl~~~lkk~ga~ 120 (320)
T PRK07914 96 VLVVVHSGGG-RAKALANQLRKLGAQ 120 (320)
T ss_pred EEEEEECCCC-HHHHHHHHHHHCCCE
T ss_conf 8999705874-046799999976998
No 268
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=23.15 E-value=47 Score=13.13 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=73.2
Q ss_pred EEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-C---
Q ss_conf 123317870799940898479987530776566420000010024743000372899999999999987486567-7---
Q gi|254780336|r 219 YIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIA-D--- 294 (488)
Q Consensus 219 ~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~-D--- 294 (488)
-|.+++|||++..+.. +.++. | ..+-.+.|..|++.||.-.++=. |
T Consensus 102 ~v~~l~~GevlLLEN~-------RF~~~-----------E------------~~~d~~~~~~l~k~la~l~DvfVnDAFg 151 (395)
T COG0126 102 AVAELKDGEVLLLENV-------RFYSE-----------E------------EKNDEEARTELVKKLASLGDVFVNDAFG 151 (395)
T ss_pred HHHCCCCCCEEEEEEC-------CCCCC-----------C------------CCCCHHHHHHHHHHHHHHCCEEEECHHH
T ss_conf 9961689867998633-------31565-----------5------------6862556899999998646988742457
Q ss_pred -------CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEE-----
Q ss_conf -------20120012047799999981996001001176532101106446777653201343245533893289-----
Q gi|254780336|r 295 -------IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVL----- 362 (488)
Q Consensus 295 -------iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvl----- 362 (488)
-++|+|. -.|++.|+..+--+.+-+..++|+-.-..+|.-.-+ |.-|+..+..+++--.-++
T Consensus 152 tAHRahaS~~g~~~-~lps~aG~LmekEl~~L~k~l~~p~rP~vaIlGGaK-----Vsdki~vienLl~kaD~liigGgm 225 (395)
T COG0126 152 TAHRAHASTVGFAK-FLPSAAGFLMEKELDALGKALENPERPFVAILGGAK-----VSDKIGVIENLLKKADKLIIGGGM 225 (395)
T ss_pred HHHHHCCCHHHHHH-HCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-----CCHHHHHHHHHHHHCCEEEECCHH
T ss_conf 77762543124666-442545188999999999986399986599960650-----000899999999751758865268
Q ss_pred -----------EEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf -----------7403533333888999998539978999
Q gi|254780336|r 363 -----------IDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 363 -----------vDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
|-.|++--.-...--++|.+++. +|++
T Consensus 226 a~tFl~A~G~~vG~sl~E~~~~~~Ak~ll~k~~~-~I~l 263 (395)
T COG0126 226 ANTFLKAQGYDVGKSLVEFDLIDGAKELLEKAKD-KIVL 263 (395)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEC
T ss_conf 9999998366501678889888899999997178-1777
No 269
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=22.98 E-value=47 Score=13.11 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=18.8
Q ss_pred HHCCEEEEEECCCCHH--HHHHHHHHHH---------HCCCCCEEEEE
Q ss_conf 1156599998185336--8999999877---------31588702799
Q gi|254780336|r 12 NEKCGVFGILGHPDAA--TLTAIGLHAL---------QHRGQEATGII 48 (488)
Q Consensus 12 ~~eCGI~Gi~~~~~~~--~~~~~gL~~L---------QHRGqdsaGIa 48 (488)
+|.=.|+|=|.-+.+. .+++..|..+ -||=.||.|+.
T Consensus 68 ~ekI~I~GDYDvDGiTstaiL~~~l~~~g~~~v~y~IP~R~~eGYGl~ 115 (574)
T PRK11070 68 GTRIIVVGDFDADGATSTALSVLALRSLGCSNIDYLVPNRFEDGYGLS 115 (574)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 994999934786067999999999998699716997989876787979
No 270
>TIGR02860 spore_IV_B stage IV sporulation protein B; InterPro: IPR014219 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else. The members of this entry belong to MEROPS peptidase family S55 (SpoIVB peptidase, clan PA)..
Probab=22.82 E-value=41 Score=13.59 Aligned_cols=10 Identities=40% Similarity=0.714 Sum_probs=4.2
Q ss_pred CEEEEEEEEE
Q ss_conf 7199999655
Q gi|254780336|r 109 GGIAIAHNGN 118 (488)
Q Consensus 109 g~iaiaHNGn 118 (488)
|+.-+.-||.
T Consensus 152 GD~I~~iNg~ 161 (423)
T TIGR02860 152 GDIILKINGE 161 (423)
T ss_pred EEEEEEECCC
T ss_conf 1089998881
No 271
>PRK07574 formate dehydrogenase; Provisional
Probab=22.81 E-value=42 Score=13.48 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=53.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCCCCCEE-CCCHHHHHHCC------CCCHHHHH
Q ss_conf 53389328974035333338889999985399789999658-980588656500-58978885466------99988999
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS-PMVLYPDFYGID-IPDPTALLANK------CSSPQEMC 425 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s-Ppi~~pc~yGid-~p~~~eLia~~------~~~~eei~ 425 (488)
.++||.|=+|- -|..-+.+.++++-.|.+ ||.--.. .|-...--.|+- ..+.+||+..- ..-.+|-+
T Consensus 189 EL~GKTlGIVG----~GrIG~~VArra~aFgm~-Vl~yDp~~l~~~~e~~lg~~~~~sldeLl~~sDvVslh~PLt~eT~ 263 (385)
T PRK07574 189 DLEGMTVGTVG----AGRIGLAVLRRLKPFDVT-LHYTDRHRLPAEVEQELGLTYHPDVDSLVSVCDVVTIHCPLHPETE 263 (385)
T ss_pred ECCCCEEEEEC----CCHHHHHHHHHHHHCCCE-EEEECCCCCCHHHHHHCCCCCCCCHHHHHHHCCEEEECCCCCHHHH
T ss_conf 26899899989----788999999999977998-9985886698899997198656899999862896998667985774
Q ss_pred HHHCCCEE---------------EEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 87099778---------------883398999861146666675673201213787668764556744666
Q gi|254780336|r 426 NFIGVDSL---------------GFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDEE 481 (488)
Q Consensus 426 ~~igadsl---------------~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~~ 481 (488)
..|+++.| .-..-+.|.+|+.. ..+--+..+=-+|.|.+.+...+.+..
T Consensus 264 ~Lin~~~l~~MK~ga~LVNtARG~iVDe~AL~~AL~s-------G~i~gaglDV~~~EP~p~dhPl~~lpN 327 (385)
T PRK07574 264 HLFDKDVLSRMKRGSYLVNTARGKIVDRDAVVEALES-------GHLAGYAGDVWFPQPAPADHPWRTMPR 327 (385)
T ss_pred HHCCHHHHHCCCCCCEEEECCCCHHCCHHHHHHHHHC-------CCCEEEEECCCCCCCCCCCCCHHCCCC
T ss_conf 0102999943899818998886110199999999972-------980499967899889989980222996
No 272
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=22.73 E-value=48 Score=13.07 Aligned_cols=33 Identities=12% Similarity=0.402 Sum_probs=23.5
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 2455338932897403533333888999998539978
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e 387 (488)
.+....||+|+++- -|+++|.+|+-|....-.+
T Consensus 168 ~p~l~~Gk~VlI~A----HGNSlRaLiK~L~~iSd~d 200 (230)
T COG0588 168 APNLKSGKNVLIVA----HGNSLRALIKYLEGISDED 200 (230)
T ss_pred HHHHHCCCEEEEEE----CCHHHHHHHHHHHCCCHHH
T ss_conf 68875798699992----6625999999984799888
No 273
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating); InterPro: IPR013357 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes which oxidize a wide variety of aliphatic and aromatic aldehydes using NAD(P) as a cofactor. In eukaryotes, at least twenty distinct aldehyde dehydrogenase families have been classified . Many aldehyde dehydrogenases have also been found in prokaryotic species. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase, though these residues are not necessarily conserved in all the enzymes of this family. The acetaldehyde dehydrogenase family (1.2.1.10 from EC) of bacterial enzymes catalyse the formation of acetyl-CoA from acetaldehyde in the degradation of phenols, cresols and catechol . Proteins in this entry occur in bacterial species and are annotated as probable acetaldehyde dehydrogenases, though this function has not been experimentally verified..
Probab=22.63 E-value=48 Score=13.06 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=28.6
Q ss_pred CCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 95699986120010478741233178707999408984799875307765664200000100247430003728999999
Q gi|254780336|r 200 HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRR 279 (488)
Q Consensus 200 ~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~ 279 (488)
|.+.+-|||-+.+ -|----|.|+-++.+.|-. +....+..+.|=| ..||.-++|-.=|=..-+
T Consensus 242 DnGtICASEQSvi--------vE~~n~~aVv~Elk~QG~y-----Fl~~ee~~~l~kf----~lr~ngtMNp~iVGk~~Q 304 (528)
T TIGR02518 242 DNGTICASEQSVI--------VEKCNKDAVVEELKKQGGY-----FLTEEEAEKLGKF----ILRPNGTMNPQIVGKSPQ 304 (528)
T ss_pred CCCEEEEECCCEE--------EECCCHHHHHHHHHHCCCC-----CCCHHHHHHHHHH----HCCCCCCCCCCCCCCCHH
T ss_conf 7761653135068--------6157726899999852422-----3477888766432----126878607632488878
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780336|r 280 NMGKNLA 286 (488)
Q Consensus 280 ~lG~~La 286 (488)
.+ ..||
T Consensus 305 ~i-A~lA 310 (528)
T TIGR02518 305 VI-AKLA 310 (528)
T ss_pred HH-HHHC
T ss_conf 99-9761
No 274
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=22.43 E-value=49 Score=13.03 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=23.7
Q ss_pred EEEEECCCCC-CCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHC
Q ss_conf 9875122268-9860027867874699719999965508789999999864
Q gi|254780336|r 83 IGHVRYSTTG-DQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISS 132 (488)
Q Consensus 83 IGHvRYsT~G-~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~ 132 (488)
|=|++.+|.- -+....++|++.- =..=..=..|.+||+-|++-
T Consensus 276 iT~~~~Pa~eplpGF~~~KP~VFa-------GlYPid~~~Ye~LrdALeKL 319 (598)
T TIGR01393 276 ITSVKNPAKEPLPGFKEVKPMVFA-------GLYPIDTEDYEDLRDALEKL 319 (598)
T ss_pred EECCCCCCCCCCCCCCCCCCEEEE-------CCCCCCCHHHHHHHHHHHHH
T ss_conf 525678737678886125765860-------12588803468999997555
No 275
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.37 E-value=49 Score=13.02 Aligned_cols=20 Identities=10% Similarity=-0.170 Sum_probs=11.4
Q ss_pred HHHHHHHHHHCCCCCHHHHC
Q ss_conf 46777653201343245533
Q gi|254780336|r 337 HHIRAFGVKLKHSANRTILA 356 (488)
Q Consensus 337 ~~~R~~~v~~K~~~~~~~i~ 356 (488)
+..+.+.+..+++|+...+.
T Consensus 221 d~~~A~~l~~~l~~l~~~~~ 240 (281)
T cd00408 221 DLEEARALQDRLLPLIEALF 240 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999985
No 276
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=22.35 E-value=49 Score=13.02 Aligned_cols=26 Identities=8% Similarity=0.049 Sum_probs=19.1
Q ss_pred HHHCCEEEEEEECCEEEEEEECCCCC
Q ss_conf 65304399996399799998256654
Q gi|254780336|r 167 HVQGAYAMLALTRTKLIATRDPIGIR 192 (488)
Q Consensus 167 ~l~Gayslv~l~~~~l~~~RDp~GiR 192 (488)
+.+++..++.....+-|++||..|-.
T Consensus 120 ~~~~~~~~i~Qi~sg~fGv~~~~~~~ 145 (392)
T cd02808 120 EREGGGDIIKQVASGRFGVRPEYLNK 145 (392)
T ss_pred HHHHCCCEEEEECCCCCCCCHHHCCC
T ss_conf 99735787998447756768899075
No 277
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=22.06 E-value=49 Score=12.98 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCCCEEE-EEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 3893289-7403533333888999998539978999
Q gi|254780336|r 356 AGKRVVL-IDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 356 ~gk~vvl-vDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
+|..++- ..|+|+.|.|-+.+++++++.|- +|.-
T Consensus 201 k~g~l~TP~~~~iL~GITR~~vi~la~~~gi-~v~E 235 (292)
T PRK07544 201 KDGELHTPTPDCFLNGITRQTVIGLAKRRGI-EVVE 235 (292)
T ss_pred ECCEEECCCCCCCCCCHHHHHHHHHHHHCCC-EEEE
T ss_conf 8998983389985577899999999998698-7999
No 278
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=21.93 E-value=43 Score=13.41 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=13.3
Q ss_pred EEEEEECCCEEE-EEECCHHCCC
Q ss_conf 159982695699-9861200104
Q gi|254780336|r 193 PLIMGELHGKPI-FCSETCALEI 214 (488)
Q Consensus 193 PL~~G~~~~~~v-~ASEs~Al~~ 214 (488)
|+--|.-+..|+ .+.|-.||..
T Consensus 138 Pir~~~AdeV~IVts~E~msL~a 160 (275)
T PRK13233 138 PIRDGKAQEVYIVASGEMMALYA 160 (275)
T ss_pred CCCCCCCCEEEEEECCCHHHHHH
T ss_conf 43136688899994683799999
No 279
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=21.90 E-value=45 Score=13.27 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCCCEEH---HEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH-HHHHHHH
Q ss_conf 47799999981996001---0011765321011064467776532013432455338932897403533333-8889999
Q gi|254780336|r 304 VPAAIGYAKESGIPFEQ---GIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT-SVKIVQM 379 (488)
Q Consensus 304 ~~aA~gya~~~gip~~~---~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT-~k~iv~~ 379 (488)
..||+..|..+|+|.++ ||-. ... ++.|. ......+++.|||||===.-. |+.-+++
T Consensus 282 alaA~Ala~~lG~~~~~~~~gL~~------~~~---~~gR~----------~~~~~~~g~~~IdD~YNAnp~Sm~AAl~~ 342 (462)
T TIGR01143 282 ALAAAALALALGLPLEEIAEGLSE------LKP---VKGRL----------EVIQTKKGLTLIDDTYNANPDSMRAALDA 342 (462)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH------CCC---CCCCE----------EEEEECCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999809888899989764------278---87650----------78986487489844135988999999999
Q ss_pred HHHCC-----CCEEEE
Q ss_conf 98539-----978999
Q gi|254780336|r 380 IRSAG-----ASEVHL 390 (488)
Q Consensus 380 lr~aG-----a~evh~ 390 (488)
|...- +++|-|
T Consensus 343 L~~~~~~~E~g~~~~V 358 (462)
T TIGR01143 343 LARFPGKGEVGKKILV 358 (462)
T ss_pred HHCCCCCCCCCCEEEE
T ss_conf 6138888863546899
No 280
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=21.81 E-value=50 Score=12.95 Aligned_cols=54 Identities=13% Similarity=0.346 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEC---CCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 33333888999998539978999965---89805886565005897888546699988999870
Q gi|254780336|r 368 VRGTTSVKIVQMIRSAGASEVHLRVA---SPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFI 428 (488)
Q Consensus 368 VRGtT~k~iv~~lr~aGa~evh~ri~---sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~i 428 (488)
|.|.....+.+.|.+.| |-+|.. ++|. .-.+|++..-|=-|--+ .+.|||-..+
T Consensus 340 v~~~~~~dv~~~L~~~g---I~vr~g~~ca~p~--~~~~~~~~~iR~S~~~Y--Nt~edid~l~ 396 (405)
T COG0520 340 VKGIHPHDVATLLDEKG---IAVRAGHHCAQPL--HRLLGVDATIRASLHLY--NTEEDVDRLL 396 (405)
T ss_pred ECCCCHHHHHHHHHHCC---EEEEECCCCCHHH--HHHCCCCCCEEEEEECC--CCHHHHHHHH
T ss_conf 78959899999998678---6998256443267--87537777579997425--9999999999
No 281
>KOG2680 consensus
Probab=21.72 E-value=50 Score=12.93 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=3.9
Q ss_pred CCCCEEEEEE
Q ss_conf 1787079994
Q gi|254780336|r 223 VENGETIVCE 232 (488)
Q Consensus 223 v~PGEiivi~ 232 (488)
|.+|.++.++
T Consensus 183 V~aGDVI~id 192 (454)
T KOG2680 183 VQAGDVITID 192 (454)
T ss_pred CCCCCEEEEE
T ss_conf 3678559987
No 282
>PRK10949 protease 4; Provisional
Probab=21.66 E-value=50 Score=12.93 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=20.2
Q ss_pred EEEEEHHHHHHHH------HHHHHHHHH----HCCCCEEEEEECCCC
Q ss_conf 2897403533333------888999998----539978999965898
Q gi|254780336|r 360 VVLIDDSIVRGTT------SVKIVQMIR----SAGASEVHLRVASPM 396 (488)
Q Consensus 360 vvlvDDSIVRGtT------~k~iv~~lr----~aGa~evh~ri~sPp 396 (488)
||.++-.||.|.. ...+++.|| +-..|-|.+||-||=
T Consensus 330 VI~a~G~Iv~G~~~~g~ig~dt~~~~lr~a~~D~~VKAvVLRVnSPG 376 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG 376 (618)
T ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 99968768548887886655899999999730867228999985899
No 283
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=21.58 E-value=50 Score=12.91 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHH-HHHH-HHHHHHH--CCCCEEEEEECCC
Q ss_conf 343245533893289740353333-3888-9999985--3997899996589
Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGT-TSVK-IVQMIRS--AGASEVHLRVASP 395 (488)
Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGt-T~k~-iv~~lr~--aGa~evh~ri~sP 395 (488)
+|..+-.+-|-+|+-|.. |+ |+|. |-..+|+ +...+.|..++|.
T Consensus 360 ~nv~~m~~~Ga~v~~~~~----g~~tL~~Ai~eA~r~w~~~~~~t~Y~~GS~ 407 (611)
T PRK13803 360 PNVERMKLLGANVIAVLA----GSQTLKDAVNEALRDWSASYENTHYCLGSA 407 (611)
T ss_pred HHHHHHHHCCCEEEEECC----CCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 879999987987998179----987289999999999983978739971564
No 284
>pfam02450 LACT Lecithin:cholesterol acyltransferase. Lecithin:cholesterol acyltransferase (LACT) is involved in extracellular metabolism of plasma lipoproteins, including cholesterol.
Probab=21.57 E-value=31 Score=14.42 Aligned_cols=25 Identities=24% Similarity=0.471 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCEECCCHHHHHHCC
Q ss_conf 5898058865650058978885466
Q gi|254780336|r 393 ASPMVLYPDFYGIDIPDPTALLANK 417 (488)
Q Consensus 393 ~sPpi~~pc~yGid~p~~~eLia~~ 417 (488)
.+|-+.--|.||+..||.+.++-..
T Consensus 286 paP~v~vyClYGvg~pTe~~y~Y~~ 310 (382)
T pfam02450 286 PAPGVKVYCIYGVGLPTPRGYYYAQ 310 (382)
T ss_pred CCCCCEEEEEECCCCCCCEEEEECC
T ss_conf 9999669998147998630688535
No 285
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=21.57 E-value=51 Score=12.91 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCEEEEEECCCCCC--CCCCCCEECC
Q ss_conf 99999853997899996589805--8865650058
Q gi|254780336|r 376 IVQMIRSAGASEVHLRVASPMVL--YPDFYGIDIP 408 (488)
Q Consensus 376 iv~~lr~aGa~evh~ri~sPpi~--~pc~yGid~p 408 (488)
=.|+||+.|.++|-+...+||-+ .=--|||.+-
T Consensus 300 GAQILrdLGV~kirLLTNNp~kk~~gL~gyGLeIv 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNLV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 99999986999899905999976066303795899
No 286
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=21.54 E-value=49 Score=12.98 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCC-CCC------CC-CCCCCHHHHHHHHHHHCCCCEEH--HEEC
Q ss_conf 300037289999999999998748656-772------01-20012047799999981996001--0011
Q gi|254780336|r 266 DSIISGRSIYVSRRNMGKNLAKESPVI-ADI------VV-PIPDGGVPAAIGYAKESGIPFEQ--GIIR 324 (488)
Q Consensus 266 dS~~~g~~Vy~~R~~lG~~La~~~~~~-~Di------V~-~VPdsg~~aA~gya~~~gip~~~--~lvk 324 (488)
-|++||.=| |=++||++.-.- +|| |+ .|=++.--.|.|-.+++=..|.| -||+
T Consensus 320 RSILDGHIv------LsR~LA~~~HyPAIDVLaS~SRvm~~vv~~eH~~aA~~lR~LLA~Y~e~e~LI~ 382 (430)
T TIGR02546 320 RSILDGHIV------LSRKLAERNHYPAIDVLASLSRVMSQVVSKEHRRAAGKLRRLLAKYKEVELLIR 382 (430)
T ss_pred HHHHHHHHH------HHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 445423689------989997416886356652366423677887899999999999999999988987
No 287
>PRK02145 consensus
Probab=21.41 E-value=51 Score=12.89 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=17.0
Q ss_pred CEEEECCCCEEEEEEECCCCEE
Q ss_conf 4123317870799940898479
Q gi|254780336|r 218 KYIRDVENGETIVCELQEDGFI 239 (488)
Q Consensus 218 ~~irdv~PGEiivi~~~~~g~~ 239 (488)
+.+.+...||+++-+++.||..
T Consensus 164 ~~~~~~G~geil~tdI~rDG~~ 185 (257)
T PRK02145 164 RKMAELGAGEILLTSMDRDGTK 185 (257)
T ss_pred HHHHHCCCCEEEEEEECCCCCC
T ss_conf 6887618786899998477877
No 288
>PRK11713 16S rRNA m3U1498 methyltransferase; Provisional
Probab=21.40 E-value=51 Score=12.89 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=5.8
Q ss_pred CCCCEEEEEEEEC
Q ss_conf 5887027999979
Q gi|254780336|r 40 RGQEATGIISFNG 52 (488)
Q Consensus 40 RGqdsaGIa~~d~ 52 (488)
|-..+-=|-++|+
T Consensus 31 R~k~gd~i~v~dg 43 (243)
T PRK11713 31 RLKEGDELRLFDG 43 (243)
T ss_pred CCCCCCEEEEEEC
T ss_conf 0899999999979
No 289
>pfam10059 consensus
Probab=21.33 E-value=51 Score=12.88 Aligned_cols=48 Identities=19% Similarity=0.391 Sum_probs=24.7
Q ss_pred CCCEEEE------EHHHHHHHHHH-----HHHHHHHHCCCCEEEEEECCCCCCCCC----CCCEECC--CHHHH
Q ss_conf 8932897------40353333388-----899999853997899996589805886----5650058--97888
Q gi|254780336|r 357 GKRVVLI------DDSIVRGTTSV-----KIVQMIRSAGASEVHLRVASPMVLYPD----FYGIDIP--DPTAL 413 (488)
Q Consensus 357 gk~vvlv------DDSIVRGtT~k-----~iv~~lr~aGa~evh~ri~sPpi~~pc----~yGid~p--~~~eL 413 (488)
+|+|++| .-|.|||.+-+ .++..|.+.|. .+ |-.|| +||++=+ +++++
T Consensus 2 skkiv~vshClLN~~~~v~g~~~~~~~~~~v~~~ll~~~~---~I------iQLPCPE~~~lG~~R~g~~keq~ 66 (119)
T pfam10059 2 SKKIIVVSHCLLNPNAKVRGLKRAEGAFKSVVIPLLAKGY---GI------IQLPCPELIYLGINRWGMTKEQY 66 (119)
T ss_pred CCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC---CE------EECCCCCHHHCCCCCCCCCHHHH
T ss_conf 8208998115378522540675440158999999986798---87------87389106532789897378871
No 290
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.21 E-value=51 Score=12.86 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=27.6
Q ss_pred CCCCEEEEEECCCEEE-EEECCHHCCCCCCCEEEECCCCEEEEEEECCC
Q ss_conf 6654159982695699-98612001047874123317870799940898
Q gi|254780336|r 189 IGIRPLIMGELHGKPI-FCSETCALEITGAKYIRDVENGETIVCELQED 236 (488)
Q Consensus 189 ~GiRPL~~G~~~~~~v-~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~ 236 (488)
...|||++--...--+ +.++.-+.-+++++...+++||+.|.|+....
T Consensus 216 Ls~RPlVv~~~~~i~i~~~~~~~~~v~~DGq~~~~l~~gd~i~I~~s~~ 264 (291)
T PRK02155 216 LSNRPIVLPDDSEVAIEIVSGRDVSVNFDMQSLTSLLLGDRIEVRRSKH 264 (291)
T ss_pred CCCCCEEECCCCEEEEEECCCCCEEEEEECCCCEEECCCCEEEEEECCC
T ss_conf 6899889899987999985799749999899744709999999998897
No 291
>TIGR00593 pola DNA polymerase I; InterPro: IPR002298 DNA carries the biological information that instructs cells how to exist in an ordered fashion. Accurate replication is thus one of the most important events in the cell life cycle. This function is mediated by DNA-directed DNA polymerases, which add nucleotide triphosphate (dNTP) residues to the 5'-end of the growing DNA chain, using a complementary DNA as template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used. DNA-dependent DNA polymerases have been grouped into families, denoted A, B and X, on the basis of sequence similarities , . Members of family A, which includes bacterial and bacteriophage polymerases, share significant similarity to Escherichia coli polymerase I; hence family A is also known as the pol I family. The bacterial polymerases also contain an exonuclease activity, which is coded for in the N-terminal portion. Three motifs, A, B and C , are seen to be conserved across all DNA polymerases, with motifs A and C also seen in RNA polymerases. They are centred on invariant residues, and their structural significance was implied from the Klenow (E. coli) structure. Motif A contains a strictly-conserved aspartate at the junction of a beta-strand and an alpha-helix; motif B contains an alpha-helix with positive charges; and motif C has a doublet of negative charges, located in a beta-turn-beta secondary structure .; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=21.09 E-value=25 Score=15.13 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=4.0
Q ss_pred CEEEEEEECC
Q ss_conf 4399996399
Q gi|254780336|r 171 AYAMLALTRT 180 (488)
Q Consensus 171 ayslv~l~~~ 180 (488)
.|-+.|+++|
T Consensus 126 G~~V~I~sgD 135 (1005)
T TIGR00593 126 GYEVRIISGD 135 (1005)
T ss_pred CCEEEEEECC
T ss_conf 8548998378
No 292
>TIGR00260 thrC threonine synthase; InterPro: IPR004450 Threonine synthase () is involved in threonine biosynthesis. It catalyses the conversion of O-phospho-L-homoserine and water into L-threonine and orthophosphate, using pyridoxal phosphate as a cofactor. The pyridoxal-phosphate binding site is a Lys (K) residue. The enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes .; GO: 0004795 threonine synthase activity, 0009088 threonine biosynthetic process.
Probab=21.06 E-value=40 Score=13.66 Aligned_cols=47 Identities=28% Similarity=0.481 Sum_probs=26.0
Q ss_pred HHHCCC---C-CC-CCCCCCCCHHHHHH--HHHHHCCCCEEHHEECCCCCCCEEEECC
Q ss_conf 874865---6-77-20120012047799--9999819960010011765321011064
Q gi|254780336|r 286 AKESPV---I-AD-IVVPIPDGGVPAAI--GYAKESGIPFEQGIIRNHYVGRTFIEPS 336 (488)
Q Consensus 286 a~~~~~---~-~D-iV~~VPdsg~~aA~--gya~~~gip~~~~lvkn~y~gRtFI~p~ 336 (488)
+++-++ + .| ||+|||+||...++ ||.+.- .-||+-...|.-++|+++
T Consensus 196 ~~~l~~Gai~~pd~v~~pV~n~GNf~~~~~GF~~~~----~~G~~D~lPi~~~~~~a~ 249 (423)
T TIGR00260 196 VEQLGWGAIEAPDKVVVPVPNSGNFGAIWKGFKEKK----EVGLIDSLPIKKRGIQAE 249 (423)
T ss_pred HHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH----HCCCCCCCCCEEEEECCC
T ss_conf 998289622378547996588056899999999998----708843667235753146
No 293
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=21.05 E-value=52 Score=12.84 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 3430789889898730--------25670568999986530439999639979999825665415998269569998612
Q gi|254780336|r 138 STSDTEVILHLIARSQ--------KNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSET 209 (488)
Q Consensus 138 s~sDTEvI~~Li~~~~--------~~~~~e~i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs 209 (488)
.+.|.|++..++.+.- ..+...++.++++.++..+++ .+++|+ |.| |..-. +.|...+|..|
T Consensus 56 ~s~DGeiia~~~~~~G~~~IRGSs~rgg~~al~~~~~~lk~g~~i-~itpDG------PrG--P~~~~-k~G~i~LA~~s 125 (189)
T cd07983 56 RSKDGEIIARVLERLGIRVVRGSSSRGGAAALREMLRALKDGYNI-AITPDG------PRG--PRYKV-KPGVILLARKS 125 (189)
T ss_pred CCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHCCCEE-EEECCC------CCC--CCCCC-CCHHHHHHHHC
T ss_conf 053533899999981981564455558199999999999779859-994689------988--43435-73299999980
Q ss_pred HHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEE---EHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 001047874123317870799940898479987530776566420000---01002474300037289999999999998
Q gi|254780336|r 210 CALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIF---EYVYFARPDSIISGRSIYVSRRNMGKNLA 286 (488)
Q Consensus 210 ~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~F---EyIYFarpdS~~~g~~Vy~~R~~lG~~La 286 (488)
-+ - |-|=-+. .+ ..--..+.+.+..|.+- ..|.| |-||+.+. .+.....+.|.++-+.|-
T Consensus 126 g~------p----Ivpv~~~-~~-~~~~l~sWDr~~iP~PF--sr~~~~~g~pi~vp~~---~~~~~le~~~~~le~~Ln 188 (189)
T cd07983 126 GA------P----IVPVAIA-AS-RAWRLKSWDRFIIPKPF--SRVVIVFGEPIHVPPD---ADEEELEEYRLELEAALN 188 (189)
T ss_pred CC------C----EEEEEEE-EE-CCEECCCCCCCCCCCCC--CEEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHC
T ss_conf 99------8----8999998-41-43306876534536534--3089997287048988---999999999999999755
No 294
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.98 E-value=52 Score=12.83 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=9.2
Q ss_pred CCCCEEEEEEEECCE
Q ss_conf 588702799997996
Q gi|254780336|r 40 RGQEATGIISFNGNK 54 (488)
Q Consensus 40 RGqdsaGIa~~d~~~ 54 (488)
|=+++..+..+|+++
T Consensus 33 Rl~~gd~l~l~~g~g 47 (246)
T COG1385 33 RLKEGDELRLFDGSG 47 (246)
T ss_pred ECCCCCEEEEEECCC
T ss_conf 667899899995899
No 295
>PRK08507 prephenate dehydrogenase; Validated
Probab=20.96 E-value=52 Score=12.83 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=19.2
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 245533893289740353333388899999853997
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488)
..+.++|+.++|++..-........+.++++..||+
T Consensus 127 ~~~LF~~~~~il~p~~~~~~~~~~~~~~l~~~lGa~ 162 (275)
T PRK08507 127 FKGLYKGAVVVLCDLEKSGEKHQERAKEIFSGIGMK 162 (275)
T ss_pred HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 077853985999688889799999999999981997
No 296
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=20.79 E-value=52 Score=12.80 Aligned_cols=52 Identities=15% Similarity=0.313 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEE
Q ss_conf 446777653201343245533893289740353333388899999853997-8999
Q gi|254780336|r 336 SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHL 390 (488)
Q Consensus 336 ~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ 390 (488)
+.++|..+.+. ++..-++..++++|||--+-=.-.|.++++|+..|.. .+-+
T Consensus 101 nKK~r~lAl~~---aLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~~Li 153 (206)
T PRK05319 101 NKKVRRLALRS---ALSEKAREGRLVVVDDFSLEAPKTKELAAKLKNLGLEDKVLI 153 (206)
T ss_pred HHHHHHHHHHH---HHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 09999999999---999997538859972576667788999999997799875379
No 297
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=20.52 E-value=53 Score=12.77 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=7.4
Q ss_pred EEEEECHHHHHHHH
Q ss_conf 78883398999861
Q gi|254780336|r 432 SLGFLSVDGLYNAI 445 (488)
Q Consensus 432 sl~yls~e~l~~ai 445 (488)
-+.|-.-+.+.+|-
T Consensus 554 e~G~t~e~A~~EA~ 567 (652)
T PRK12814 554 VTGYSPEQAREEAL 567 (652)
T ss_pred ECCCCHHHHHHHHH
T ss_conf 17989999999998
No 298
>pfam09861 DUF2088 Uncharacterized conserved protein (DUF2088). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.35 E-value=53 Score=12.74 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=25.8
Q ss_pred CCHHHHC-CCCEEEEEHHHHHHHHHHH----HHHHHHHCCCCEEEEEEC
Q ss_conf 3245533-8932897403533333888----999998539978999965
Q gi|254780336|r 350 ANRTILA-GKRVVLIDDSIVRGTTSVK----IVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 350 ~~~~~i~-gk~vvlvDDSIVRGtT~k~----iv~~lr~aGa~evh~ri~ 393 (488)
|+++.++ |++|+++=+-|-|-+-.+. +++.|.++|++.-++.+-
T Consensus 46 ~L~~~~~~~~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~I~iv 94 (203)
T pfam09861 46 PLDELVKPGEKVVIVVSDITRPTPSDIILPLLLEELNAVGIPDEDITIL 94 (203)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 0898837999799995797888856755999999999759981258999
No 299
>pfam11626 Rap1_C Rap1 - C terminal domain. This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C terminal domain.
Probab=20.30 E-value=24 Score=15.18 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=21.7
Q ss_pred EEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 74035333338889999985399789999
Q gi|254780336|r 363 IDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 363 vDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
-||..+++...+.|-+++++.|+..+-.|
T Consensus 37 eDDe~L~~~d~~~i~~l~kKHG~~~~~~R 65 (68)
T pfam11626 37 EDDECLESNDGRDIERLEKKHGTGRFEAR 65 (68)
T ss_pred CCHHHHHCCCHHHHHHHHHHHCHHHHHHH
T ss_conf 33899974888999999998477988786
No 300
>pfam07999 RHSP Retrotransposon hot spot protein. Members of this family are retrotransposon hot spot proteins. They are associated with polymorphic subtelomeric regions in Trypanosoma.
Probab=20.29 E-value=54 Score=12.73 Aligned_cols=71 Identities=25% Similarity=0.378 Sum_probs=46.8
Q ss_pred CCCCCHHHHCCCCEE--EEEH----HHHHHHHHHHHHHHHHH---CCCCEEEEEE---CCCCCCCCCCCCEECCCHHHHH
Q ss_conf 134324553389328--9740----35333338889999985---3997899996---5898058865650058978885
Q gi|254780336|r 347 KHSANRTILAGKRVV--LIDD----SIVRGTTSVKIVQMIRS---AGASEVHLRV---ASPMVLYPDFYGIDIPDPTALL 414 (488)
Q Consensus 347 K~~~~~~~i~gk~vv--lvDD----SIVRGtT~k~iv~~lr~---aGa~evh~ri---~sPpi~~pc~yGid~p~~~eLi 414 (488)
+|++....+.+--+. +... .-+-+++++.|.+.||+ +|-+.=|... ++|-..-|..+|.|+|+..-..
T Consensus 467 ~f~l~~~~l~d~l~~a~~fe~~~v~aFl~~~fv~~I~~~lreLk~~~~~~sH~~~~vl~~~~~vgp~~~g~d~~~~~~~~ 546 (597)
T pfam07999 467 NYMLFAAMLQSTLRIAWIFEKFGIAAFVDLNLSLRIAKQLRKLKLAGSSLSHIVLGVLAGYLAVGPDVMGQDIPTSHYYL 546 (597)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCCCHHHCCCCCCCCEEC
T ss_conf 24999999988751134665678999870899999987525446898886632023311322358244346688543224
Q ss_pred HCC
Q ss_conf 466
Q gi|254780336|r 415 ANK 417 (488)
Q Consensus 415 a~~ 417 (488)
-++
T Consensus 547 P~~ 549 (597)
T pfam07999 547 PAK 549 (597)
T ss_pred CCH
T ss_conf 400
No 301
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=20.12 E-value=25 Score=15.03 Aligned_cols=132 Identities=14% Similarity=0.250 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHH------HHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEE
Q ss_conf 6567720120012047799999------9819960010011-76532101106446777653201343245533893289
Q gi|254780336|r 290 PVIADIVVPIPDGGVPAAIGYA------KESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVL 362 (488)
Q Consensus 290 ~~~~DiV~~VPdsg~~aA~gya------~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvl 362 (488)
-...|+++|+|.|| ++.-||+ +..++.|.+-+-. ++..|.....||.-- + .++.+.++...
T Consensus 171 i~~GDviiGl~SsG-~HsNGySLiRki~~~~~~~~~~~~~~~~~tlge~LL~PTriY----~----~~i~~l~~~~~--- 238 (338)
T PRK05385 171 VKEGDVLIGLASSG-LHSNGYSLVRKILEVAGLDLDDTLPELGKTLGEELLEPTRIY----V----KPVLALLKEGD--- 238 (338)
T ss_pred CCCCCEEEEEECCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHH----H----HHHHHHHHHCC---
T ss_conf 89998899960798-665507899999987499823256534686999863506776----7----99999986278---
Q ss_pred EEHHHHHHH---HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCC-CCHHHHHHHH--CCCEEEEE
Q ss_conf 740353333---38889999985399789999658980588656500589788854669-9988999870--99778883
Q gi|254780336|r 363 IDDSIVRGT---TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKC-SSPQEMCNFI--GVDSLGFL 436 (488)
Q Consensus 363 vDDSIVRGt---T~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~-~~~eei~~~i--gadsl~yl 436 (488)
|+|- |=--+...|.+.=++.....|-..+.. +|.-=++|.... -+.+||.+-. |.--+.+.
T Consensus 239 -----Ikg~aHITGGGl~~Nl~Rilp~~l~a~Id~~~w~--------~P~iF~~i~~~G~i~~~EM~rtFNmGIGmvliV 305 (338)
T PRK05385 239 -----VKGMAHITGGGFIENLPRVLPEGLGAEIDKGSWP--------VPPIFKWLQKAGNVEEEEMYRTFNMGIGMVLIV 305 (338)
T ss_pred -----EEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC--------CCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEE
T ss_conf -----1399982588500365411578806999667799--------988999999848989999987435822269998
Q ss_pred CHHHHHHHHC
Q ss_conf 3989998611
Q gi|254780336|r 437 SVDGLYNAIC 446 (488)
Q Consensus 437 s~e~l~~ai~ 446 (488)
+-++..+++.
T Consensus 306 ~~~~~~~v~~ 315 (338)
T PRK05385 306 PEEDADAALA 315 (338)
T ss_pred CHHHHHHHHH
T ss_conf 3899999999
No 302
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=20.03 E-value=54 Score=12.70 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=7.6
Q ss_pred HHHHHHHCCCCEE
Q ss_conf 9999998199600
Q gi|254780336|r 307 AIGYAKESGIPFE 319 (488)
Q Consensus 307 A~gya~~~gip~~ 319 (488)
+.-+|+..|+|-+
T Consensus 248 a~i~A~~~gl~~~ 260 (314)
T PRK11553 248 IALLAKTMGLPAP 260 (314)
T ss_pred HHHHHHHHCCCHH
T ss_conf 9999998792999
Done!