Query gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 488
No_of_seqs 228 out of 4342
Neff 5.9
Searched_HMMs 23785
Date Mon May 30 09:40:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780336.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ecf_A Glutamine phosphoribosy 100.0 0 0 1171.0 41.6 459 15-482 1-481 (504)
2 1ao0_A Glutamine phosphoribosy 100.0 0 0 1155.1 40.9 458 15-480 1-459 (459)
3 2bpl_A Glucosamine--fructose-6 100.0 0 0 383.5 23.5 259 15-286 1-268 (608)
4 1xff_A D-fructose-6-, glucosam 100.0 0 0 380.4 22.3 219 15-241 1-222 (240)
5 1ct9_A Asparagine synthetase B 100.0 8.7E-31 3.7E-35 237.6 24.8 240 16-315 2-251 (553)
6 3mdn_A Glutamine amidotransfer 100.0 4.6E-32 1.9E-36 246.7 16.8 220 13-244 2-257 (274)
7 1te5_A Conserved hypothetical 100.0 8.5E-32 3.6E-36 244.8 8.8 207 14-232 1-247 (257)
8 1jgt_A Beta-lactam synthetase; 100.0 2.2E-27 9.4E-32 213.3 16.0 202 78-309 36-261 (513)
9 1q15_A CARA; CMPR, (2S,5S)-5-c 99.9 1.8E-24 7.4E-29 192.7 14.9 207 80-316 27-263 (503)
10 1o57_A PUR operon repressor; p 99.9 1.6E-25 6.6E-30 200.2 -1.6 201 184-393 16-232 (291)
11 1ofd_A Ferredoxin-dependent gl 99.7 2E-15 8.3E-20 128.2 20.2 198 29-237 147-398 (1520)
12 1ea0_A Glutamate synthase [NAD 99.7 4.2E-16 1.8E-20 133.0 16.0 184 44-238 166-400 (1479)
13 1wd5_A Hypothetical protein TT 99.4 2.8E-13 1.2E-17 113.0 6.1 167 276-481 4-205 (208)
14 1vch_A Phosphoribosyltransfera 99.4 2.1E-12 9E-17 106.6 8.8 117 276-392 36-155 (175)
15 1vdm_A Purine phosphoribosyltr 99.1 3.5E-10 1.5E-14 90.9 7.5 118 282-408 15-137 (153)
16 1y0b_A Xanthine phosphoribosyl 98.9 4.7E-09 2E-13 82.8 7.9 118 275-392 35-155 (197)
17 1l1q_A Adenine phosphoribosylt 98.8 1.2E-08 4.9E-13 80.0 6.9 111 276-387 36-147 (186)
18 2wns_A Orotate phosphoribosylt 98.6 1.9E-07 8E-12 71.4 8.5 133 276-445 43-178 (205)
19 1nul_A XPRT, xanthine-guanine 98.6 3.5E-08 1.5E-12 76.6 4.5 121 274-410 12-132 (152)
20 2jbh_A HHGP; glycosyltransfera 98.6 3.7E-07 1.6E-11 69.3 9.2 141 255-410 37-193 (225)
21 2jky_A Hypoxanthine-guanine ph 98.6 9.6E-09 4E-13 80.6 1.0 112 278-390 13-135 (213)
22 2ywu_A Hypoxanthine-guanine ph 98.5 5.5E-07 2.3E-11 68.1 8.9 136 269-415 14-157 (181)
23 1qb7_A APRT, adenine phosphori 98.5 4.3E-07 1.8E-11 68.9 8.1 127 259-391 38-172 (236)
24 2yzk_A OPRT, oprtase, orotate 98.5 8E-07 3.4E-11 66.9 9.0 133 276-446 39-174 (178)
25 1yfz_A Hypoxanthine-guanine ph 98.5 9.7E-07 4.1E-11 66.3 9.1 135 270-415 38-180 (205)
26 1g2q_A Adenine phosphoribosylt 98.4 5.8E-07 2.4E-11 67.9 7.1 116 275-393 41-158 (187)
27 3hvu_A Hypoxanthine phosphorib 98.4 9.8E-07 4.1E-11 66.3 7.9 139 269-417 35-181 (204)
28 3ohp_A Hypoxanthine phosphorib 98.4 1.6E-06 6.7E-11 64.8 8.8 135 269-410 9-150 (177)
29 3o7m_A Hypoxanthine phosphorib 98.3 1.2E-06 5.2E-11 65.6 7.4 138 270-418 14-160 (186)
30 2dy0_A APRT, adenine phosphori 98.3 1.2E-06 4.9E-11 65.7 6.8 116 276-393 46-162 (190)
31 1hgx_A HGXPRTASE, hypoxanthine 98.3 8.8E-07 3.7E-11 66.6 5.9 134 270-414 16-157 (183)
32 2geb_A Hypoxanthine-guanine ph 98.3 4E-06 1.7E-10 61.9 9.0 135 270-414 18-159 (185)
33 1pzm_A HGPRT, hypoxanthine-gua 98.3 4.9E-06 2.1E-10 61.3 8.7 140 268-417 27-183 (211)
34 1z7g_A HGPRT, HGPRTASE, hypoxa 98.2 7E-06 2.9E-10 60.2 8.7 139 257-410 31-185 (217)
35 1zn8_A APRT, adenine phosphori 98.2 3.5E-06 1.5E-10 62.4 7.1 111 280-392 45-155 (180)
36 2p1z_A Phosphoribosyltransfera 98.2 9.6E-06 4E-10 59.3 8.4 103 276-392 46-149 (180)
37 1tc1_A Protein (hypoxanthine p 98.1 1.5E-05 6.2E-10 57.9 8.8 140 270-417 13-168 (220)
38 1w30_A PYRR bifunctional prote 98.1 2.5E-05 1.1E-09 56.2 9.9 142 270-417 18-179 (201)
39 1fsg_A HGPRTASE, hypoxanthine- 98.1 7.8E-06 3.3E-10 59.9 7.2 132 273-415 54-204 (233)
40 1a3c_A PYRR, pyrimidine operon 98.1 1.2E-05 5.1E-10 58.5 7.9 143 269-415 8-163 (181)
41 1cjb_A Protein (hypoxanthine-g 98.1 6.7E-06 2.8E-10 60.4 6.5 157 252-410 28-196 (231)
42 1dqn_A Guanine phosphoribosylt 98.0 1.1E-06 4.5E-11 66.0 1.4 110 274-392 41-153 (230)
43 3m3h_A OPRT, oprtase, orotate 98.0 1.9E-05 8.1E-10 57.1 7.7 133 277-445 70-205 (234)
44 2ji4_A Phosphoribosyl pyrophos 98.0 5.3E-06 2.2E-10 61.1 4.6 157 285-445 183-359 (379)
45 2aee_A OPRT, oprtase, orotate 97.9 4.7E-05 2E-09 54.3 8.1 134 276-445 49-185 (211)
46 2h06_A Ribose-phosphate pyroph 97.8 2.9E-05 1.2E-09 55.8 6.1 135 293-445 163-300 (326)
47 1ufr_A TT1027, PYR mRNA-bindin 97.8 7E-05 2.9E-09 53.1 7.6 138 270-414 9-160 (181)
48 3dah_A Ribose-phosphate pyroph 97.8 6.1E-06 2.6E-10 60.6 2.0 143 282-443 157-300 (319)
49 3dez_A OPRT, oprtase, orotate 97.8 9.9E-05 4.2E-09 52.0 8.1 134 276-445 81-217 (243)
50 1dku_A Protein (phosphoribosyl 97.8 4.7E-05 2E-09 54.3 6.4 134 294-445 168-303 (317)
51 3mjd_A Orotate phosphoribosylt 97.8 7.8E-05 3.3E-09 52.7 7.3 142 280-445 66-211 (232)
52 2ps1_A Orotate phosphoribosylt 97.7 0.00016 6.7E-09 50.6 8.2 139 277-445 49-203 (226)
53 1u9y_A RPPK;, ribose-phosphate 97.7 5.9E-05 2.5E-09 53.6 5.9 88 293-395 155-243 (284)
54 3n2l_A OPRT, oprtase, orotate 97.6 0.00027 1.1E-08 48.9 8.3 137 281-446 74-217 (238)
55 1lh0_A OMP synthase; loop clos 97.2 0.0022 9.2E-08 42.4 8.9 138 280-446 48-192 (213)
56 1i5e_A Uracil phosphoribosyltr 94.0 0.1 4.3E-06 30.5 5.7 87 295-392 73-159 (209)
57 2ehj_A Uracil phosphoribosyltr 91.3 0.16 6.9E-06 29.1 3.7 87 295-392 72-158 (208)
58 1o5o_A Uracil phosphoribosyltr 90.8 0.16 6.6E-06 29.2 3.2 85 295-392 85-171 (221)
59 1bd3_D Uprtase, uracil phospho 89.5 0.13 5.4E-06 29.8 1.9 50 347-396 146-199 (243)
60 1v9s_A Uracil phosphoribosyltr 88.0 0.29 1.2E-05 27.3 2.9 46 347-392 113-158 (208)
61 2e55_A Uracil phosphoribosyltr 86.5 0.31 1.3E-05 27.1 2.4 104 274-391 24-155 (208)
62 2f62_A Nucleoside 2-deoxyribos 86.2 0.8 3.3E-05 24.2 4.3 28 293-320 68-103 (161)
63 3ehd_A Uncharacterized conserv 84.4 1.6 6.9E-05 22.0 5.2 28 292-319 69-101 (162)
64 1s2d_A Purine trans deoxyribos 82.8 1.3 5.5E-05 22.7 4.2 29 292-320 81-114 (167)
65 1dcf_A ETR1 protein; beta-alph 82.1 1.5 6.3E-05 22.3 4.3 34 354-391 4-37 (136)
66 2d92_A INAD-like protein; PDZ 80.8 1.6 6.6E-05 22.1 4.0 43 354-396 63-105 (108)
67 1vae_A Rhophilin 2, rhophilin, 79.7 0.91 3.8E-05 23.8 2.5 45 354-398 54-98 (111)
68 2vsv_A Rhophilin-2; scaffold p 77.8 1.8 7.5E-05 21.7 3.5 43 354-396 62-104 (109)
69 2yt7_A Amyloid beta A4 precurs 77.0 3 0.00013 20.1 4.5 44 354-397 56-101 (101)
70 2djt_A Unnamed protein product 74.4 3.5 0.00015 19.6 4.3 41 355-396 58-98 (104)
71 1xtt_A Probable uracil phospho 73.9 3 0.00012 20.1 3.8 91 295-391 74-167 (216)
72 2dkr_A LIN-7 homolog B; LIN-7B 70.9 4 0.00017 19.2 3.9 42 354-396 49-90 (93)
73 1mio_B Nitrogenase molybdenum 70.5 4.9 0.00021 18.6 8.6 89 300-396 243-347 (458)
74 1ta9_A Glycerol dehydrogenase; 70.4 4.9 0.00021 18.6 4.8 28 109-136 92-121 (450)
75 2eeg_A PDZ and LIM domain prot 70.0 3.9 0.00016 19.3 3.7 42 354-396 50-91 (94)
76 2dlu_A INAD-like protein; PDZ 69.3 3.9 0.00017 19.3 3.6 42 354-396 57-98 (111)
77 1vk9_A Conserved hypothetical 69.1 1.8 7.4E-05 21.8 1.7 31 164-195 21-52 (151)
78 2eei_A PDZ domain-containing p 68.9 3.9 0.00016 19.3 3.5 43 354-397 50-92 (106)
79 1um1_A KIAA1849 protein, RSGI 67.9 5.1 0.00021 18.5 3.9 42 354-396 55-96 (110)
80 1uew_A Membrane associated gua 65.3 6.2 0.00026 17.9 4.2 41 354-395 62-102 (114)
81 2vsp_A PDZ domain-containing p 65.0 4.9 0.0002 18.6 3.3 43 354-397 45-87 (91)
82 3dmp_A Uracil phosphoribosyltr 64.8 2.1 8.8E-05 21.2 1.4 82 295-391 80-165 (217)
83 2fe5_A Presynaptic protein SAP 64.4 6.2 0.00026 17.8 3.8 40 355-395 53-92 (94)
84 2awx_A Synapse associated prot 64.3 6.3 0.00026 17.8 3.8 45 355-400 53-97 (105)
85 1q7x_A PDZ2B domain of PTP-BAS 64.0 4.7 0.0002 18.7 3.1 42 354-396 61-102 (108)
86 1m1n_A Nitrogenase molybdenum- 63.5 6.7 0.00028 17.6 5.9 89 295-392 271-378 (491)
87 2dmz_A INAD-like protein; PDZ 63.2 6.8 0.00028 17.6 3.9 39 354-393 65-103 (129)
88 1f8y_A Nucleoside 2-deoxyribos 62.6 3.6 0.00015 19.6 2.3 29 292-320 78-111 (157)
89 1gmx_A GLPE protein; transfera 62.3 5.6 0.00024 18.2 3.3 35 354-391 55-89 (108)
90 3ilm_A ALR3790 protein; rhodan 62.1 6.8 0.00028 17.6 3.6 33 356-391 55-87 (141)
91 2jil_A GRIP1 protein, glutamat 61.9 5.7 0.00024 18.1 3.2 43 355-398 52-94 (97)
92 2qg1_A Multiple PDZ domain pro 61.7 7.2 0.0003 17.4 4.0 42 354-396 48-89 (92)
93 2eno_A Synaptojanin-2-binding 61.3 3.8 0.00016 19.3 2.3 40 355-395 67-106 (120)
94 2fne_A Multiple PDZ domain pro 60.9 6.9 0.00029 17.5 3.5 41 355-396 73-113 (117)
95 1ufx_A KIAA1526 protein; PDZ d 60.4 5.5 0.00023 18.2 2.9 43 354-396 51-97 (103)
96 2ehr_A INAD-like protein; PDZ 60.4 6.9 0.00029 17.5 3.4 41 355-396 70-110 (117)
97 1x45_A Amyloid beta (A4) precu 60.3 7.6 0.00032 17.2 4.0 43 354-396 52-95 (98)
98 2k0z_A Uncharacterized protein 59.4 7.8 0.00033 17.1 4.0 34 355-391 54-87 (110)
99 2byg_A Channel associated prot 59.1 5.6 0.00024 18.2 2.8 42 355-397 74-115 (117)
100 2vwr_A Ligand of NUMB protein 58.7 6.7 0.00028 17.6 3.1 41 354-395 48-88 (95)
101 1n7e_A AMPA receptor interacti 57.5 8.4 0.00035 16.9 4.2 41 355-396 50-90 (97)
102 1whd_A RGS3, regulator of G-pr 57.4 8.4 0.00035 16.9 3.6 41 354-395 54-94 (100)
103 2jxo_A Ezrin-radixin-moesin-bi 57.2 7.6 0.00032 17.2 3.2 41 354-395 51-91 (98)
104 3luf_A Two-component system re 57.1 8.2 0.00034 17.0 3.3 28 356-386 123-150 (259)
105 3eod_A Protein HNR; response r 57.1 8.5 0.00036 16.9 4.0 31 355-388 5-35 (130)
106 2kjd_A Sodium/hydrogen exchang 56.1 7.7 0.00032 17.2 3.1 40 354-394 51-90 (128)
107 2r4h_A Membrane-associated gua 55.9 8.9 0.00037 16.7 3.4 41 354-395 68-108 (112)
108 1d5g_A Human phosphatase HPTP1 55.8 8.9 0.00038 16.7 3.8 42 354-396 52-93 (96)
109 3h5i_A Response regulator/sens 55.8 5.5 0.00023 18.2 2.3 29 355-386 3-31 (140)
110 2jik_A Synaptojanin-2 binding 55.4 7.1 0.0003 17.4 2.8 40 355-395 57-96 (101)
111 2h2b_A Tight junction protein 55.0 8 0.00034 17.1 3.0 41 354-395 56-96 (107)
112 2q3e_A UDP-glucose 6-dehydroge 54.7 6.9 0.00029 17.5 2.7 81 308-397 286-372 (467)
113 2csj_A TJP2 protein; PDZ domai 54.6 7.6 0.00032 17.2 2.8 41 354-395 63-103 (117)
114 1wi2_A Riken cDNA 2700099C19; 54.5 9.4 0.00039 16.6 3.4 43 354-396 59-101 (104)
115 3khf_A Microtubule-associated 54.2 9.4 0.0004 16.6 3.8 41 354-395 52-92 (99)
116 2edz_A PDZ domain-containing p 53.8 9.6 0.0004 16.5 3.8 41 354-395 56-96 (114)
117 1y7n_A Amyloid beta A4 precurs 53.5 9.7 0.00041 16.5 3.5 39 354-393 49-87 (90)
118 1i16_A Interleukin 16, LCF; cy 52.9 9.9 0.00042 16.4 3.6 43 355-397 77-119 (130)
119 3c97_A Signal transduction his 52.3 10 0.00042 16.4 3.8 28 355-385 8-35 (140)
120 2dc2_A GOPC, golgi associated 52.1 8.7 0.00037 16.8 2.8 42 355-397 55-98 (103)
121 1wf8_A Neurabin-I; PDZ domain, 51.8 10 0.00043 16.3 3.4 42 354-396 59-100 (107)
122 1mio_A Nitrogenase molybdenum 51.4 10 0.00044 16.3 5.6 88 297-392 259-366 (533)
123 3ngh_A PDZ domain-containing p 51.4 10 0.00044 16.2 3.7 41 354-395 44-84 (106)
124 3kht_A Response regulator; PSI 50.6 6.2 0.00026 17.9 1.9 33 355-390 3-36 (144)
125 2yub_A LIMK-2, LIM domain kina 50.2 11 0.00046 16.1 3.7 44 354-398 64-107 (118)
126 2pa1_A PDZ and LIM domain prot 49.8 10 0.00042 16.4 2.8 39 354-393 44-82 (87)
127 2he4_A Na(+)/H(+) exchange reg 49.5 11 0.00047 16.0 3.5 42 354-396 46-87 (90)
128 2db5_A INAD-like protein; PDZ 49.1 11 0.00047 16.0 4.0 44 354-398 73-117 (128)
129 2khz_A C-MYC-responsive protei 49.1 6.8 0.00028 17.6 1.9 29 292-320 77-108 (165)
130 1wg6_A Hypothetical protein (r 48.9 11 0.00048 16.0 3.6 40 354-393 74-119 (127)
131 2daz_A INAD-like protein; PDZ 48.8 11 0.00048 16.0 3.5 42 354-396 70-111 (124)
132 3bpu_A Membrane-associated gua 48.8 11 0.00048 16.0 3.7 40 353-392 42-82 (88)
133 3hix_A ALR3790 protein; rhodan 48.7 11 0.00048 16.0 3.9 32 356-390 51-82 (106)
134 2fsx_A RV0390, COG0607: rhodan 48.4 12 0.00048 15.9 3.3 37 353-392 76-112 (148)
135 1wha_A KIAA0147 protein, scrib 48.1 12 0.00049 15.9 3.2 43 355-398 58-100 (105)
136 2kom_A Partitioning defective 47.8 12 0.0005 15.9 3.7 41 355-395 78-119 (121)
137 2jtq_A Phage shock protein E; 47.8 12 0.0005 15.9 3.7 34 356-392 40-73 (85)
138 2iwo_A Multiple PDZ domain pro 47.4 12 0.0005 15.8 4.1 41 355-396 73-113 (120)
139 2e7k_A Maguk P55 subfamily mem 47.4 11 0.00048 16.0 2.8 39 356-396 50-88 (91)
140 1v6b_A Harmonin isoform A1; st 46.7 12 0.00051 15.8 4.1 46 354-399 62-111 (118)
141 1um7_A Synapse-associated prot 46.6 12 0.00052 15.7 3.4 41 354-395 58-98 (113)
142 3i4w_A Disks large homolog 4; 46.4 10 0.00042 16.4 2.4 43 354-397 54-96 (104)
143 1m5z_A GRIP, AMPA receptor int 46.0 13 0.00053 15.7 3.5 39 354-393 50-88 (91)
144 3gge_A PDZ domain-containing p 45.9 13 0.00053 15.7 3.2 43 354-396 47-90 (95)
145 1yt8_A Thiosulfate sulfurtrans 45.7 13 0.00053 15.7 3.5 34 355-392 320-353 (539)
146 1u39_A Amyloid beta A4 precurs 45.0 13 0.00054 15.6 2.8 38 354-392 40-77 (80)
147 2q3g_A PDZ and LIM domain prot 44.9 13 0.00055 15.6 4.0 39 354-393 45-83 (89)
148 1g9o_A NHE-RF; PDZ domain, com 44.8 13 0.00055 15.6 3.3 42 354-396 45-86 (91)
149 1v62_A KIAA1719 protein; struc 44.7 13 0.00055 15.5 3.8 41 354-395 61-101 (117)
150 3cbz_A Dishevelled-2; PDZ doma 43.8 13 0.00057 15.5 3.5 44 354-397 52-97 (108)
151 3lte_A Response regulator; str 43.7 11 0.00046 16.1 2.3 28 356-386 5-32 (132)
152 2qkv_A Inactivation-NO-after-p 43.5 14 0.00057 15.4 3.8 40 356-396 52-91 (96)
153 1uit_A Human discs large 5 pro 43.2 14 0.00058 15.4 3.2 45 354-399 60-104 (117)
154 2g5m_B Neurabin-2; spinophilin 42.9 14 0.00058 15.4 2.8 39 355-394 55-93 (113)
155 1qgu_B Protein (nitrogenase mo 42.4 14 0.00059 15.3 7.6 89 300-396 291-395 (519)
156 2koj_A Partitioning defective 42.3 14 0.0006 15.3 3.7 43 354-396 58-101 (111)
157 3b76_A E3 ubiquitin-protein li 42.2 13 0.00057 15.5 2.5 38 355-393 73-110 (118)
158 2jre_A C60-1 PDZ domain peptid 41.9 14 0.0006 15.3 3.0 38 355-393 64-101 (108)
159 2yuy_A RHO GTPase activating p 41.7 12 0.0005 15.9 2.2 39 354-393 79-117 (126)
160 2ego_A General receptor for ph 41.7 14 0.00061 15.2 3.7 38 354-392 55-92 (96)
161 1z87_A Alpha-1-syntrophin; pro 41.5 15 0.00061 15.2 2.7 39 354-393 122-160 (263)
162 3hg7_A D-isomer specific 2-hyd 41.3 15 0.00062 15.2 4.6 108 355-474 138-266 (324)
163 1wf7_A Enigma homologue protei 41.0 15 0.00062 15.2 4.1 44 354-398 47-90 (103)
164 1uju_A Scribble; PDZ domain, c 41.0 11 0.00048 16.0 2.0 39 355-394 64-102 (111)
165 2rhm_A Putative kinase; ZP_007 40.8 15 0.00063 15.1 4.4 102 295-396 9-115 (193)
166 1qxn_A SUD, sulfide dehydrogen 40.8 15 0.00063 15.1 3.2 33 355-390 80-112 (137)
167 2edv_A FERM and PDZ domain-con 40.5 15 0.00063 15.1 4.0 40 353-393 47-86 (96)
168 2zxr_A Single-stranded DNA spe 40.5 15 0.00063 15.1 4.1 18 270-287 403-420 (666)
169 1p3y_1 MRSD protein; flavoprot 40.4 15 0.00063 15.1 4.4 51 358-414 116-177 (194)
170 1uep_A Membrane associated gua 40.3 12 0.00051 15.8 2.1 47 354-400 53-100 (103)
171 2krg_A Na(+)/H(+) exchange reg 40.2 14 0.00059 15.3 2.4 12 39-50 16-27 (216)
172 1jq5_A Glycerol dehydrogenase; 40.2 15 0.00064 15.1 3.7 30 373-413 296-325 (370)
173 3mnf_A PAC2 family protein; PS 39.9 15 0.00063 15.1 2.5 33 372-404 100-136 (250)
174 1tp5_A Presynaptic density pro 39.6 15 0.00062 15.2 2.4 41 355-396 58-98 (119)
175 1tq1_A AT5G66040, senescence-a 39.1 16 0.00066 15.0 2.7 35 355-392 80-114 (129)
176 1wfv_A Membrane associated gua 38.8 16 0.00067 14.9 3.3 43 354-397 55-97 (103)
177 2vph_A Tyrosine-protein phosph 38.5 16 0.00068 14.9 2.8 40 354-393 50-92 (100)
178 3h1g_A Chemotaxis protein CHEY 38.3 16 0.00068 14.9 4.0 34 355-391 3-36 (129)
179 1n7t_A 99-MER peptide of densi 38.2 16 0.00068 14.9 3.4 39 354-393 60-98 (103)
180 3o46_A Maguk P55 subfamily mem 38.0 16 0.00069 14.8 3.6 41 355-397 48-88 (93)
181 1x5q_A LAP4 protein; PDZ domai 37.9 16 0.00069 14.8 3.5 39 354-393 64-102 (110)
182 2pkt_A PDZ and LIM domain prot 37.6 17 0.0007 14.8 3.5 39 355-394 46-84 (91)
183 2q9v_A Membrane-associated gua 37.2 12 0.00051 15.8 1.6 39 355-393 47-86 (90)
184 1qav_A Alpha-1 syntrophin (res 36.9 17 0.00072 14.7 3.1 38 354-392 49-86 (90)
185 3lqk_A Dipicolinate synthase s 36.5 17 0.00073 14.7 4.2 15 293-307 87-101 (201)
186 1tmy_A CHEY protein, TMY; chem 36.1 18 0.00074 14.6 4.0 26 357-385 2-27 (120)
187 3mcu_A Dipicolinate synthase, 35.9 18 0.00074 14.6 4.5 14 293-306 85-98 (207)
188 1ujd_A KIAA0559 protein; PDZ d 35.5 18 0.00075 14.6 2.5 39 355-394 69-107 (117)
189 2v90_A PDZ domain-containing p 35.2 18 0.00076 14.5 3.4 40 355-395 49-88 (96)
190 2rcz_A Tight junction protein 35.1 18 0.00076 14.5 3.6 38 356-394 42-79 (81)
191 2edp_A Fragment, shroom family 35.1 14 0.0006 15.3 1.7 39 355-395 55-93 (100)
192 2jba_A Phosphate regulon trans 35.0 18 0.00077 14.5 4.3 31 357-391 2-32 (127)
193 1gvn_B Zeta; postsegregational 34.9 18 0.00077 14.5 3.0 46 351-396 103-148 (287)
194 2z17_A Pleckstrin homology SEC 34.3 19 0.00078 14.4 2.9 38 354-392 66-103 (104)
195 3grf_A Ornithine carbamoyltran 34.1 19 0.00079 14.4 6.4 108 271-400 87-199 (328)
196 2iwn_A Multiple PDZ domain pro 34.1 19 0.00079 14.4 2.6 40 354-394 52-91 (97)
197 1mfg_A ERB-B2 interacting prot 33.9 19 0.00079 14.4 3.6 39 354-393 52-90 (95)
198 1pvv_A Otcase, ornithine carba 33.9 19 0.00079 14.4 6.0 91 293-402 102-194 (315)
199 1r6j_A Syntenin 1; PDZ, membra 33.8 19 0.0008 14.4 3.2 38 355-393 42-79 (82)
200 2eeh_A PDZ domain-containing p 33.8 19 0.0008 14.4 2.9 40 354-395 54-93 (100)
201 2r25_B Osmosensing histidine p 33.3 19 0.00081 14.3 3.8 32 358-392 3-34 (133)
202 2fcf_A Multiple PDZ domain pro 32.8 20 0.00083 14.3 3.3 41 354-395 58-98 (103)
203 2dm8_A INAD-like protein; PDZ 32.5 20 0.00084 14.2 4.1 46 354-400 62-107 (116)
204 3egg_C Spinophilin; PP1, serin 32.4 20 0.00084 14.2 3.7 39 354-393 130-168 (170)
205 1u3b_A Amyloid beta A4 precurs 32.2 20 0.00084 14.2 2.8 39 354-393 130-168 (185)
206 1o2d_A Alcohol dehydrogenase, 32.2 20 0.00085 14.2 3.9 29 123-151 59-93 (371)
207 3gl9_A Response regulator; bet 32.1 20 0.00085 14.2 2.8 25 358-385 3-27 (122)
208 2w37_A Ornithine carbamoyltran 31.8 20 0.00086 14.2 6.4 108 270-402 108-216 (359)
209 2o2t_A Multiple PDZ domain pro 31.8 20 0.00086 14.2 4.0 42 354-396 68-110 (117)
210 1k68_A Phytochrome response re 31.8 20 0.00086 14.2 4.2 32 357-391 2-34 (140)
211 1q3o_A Shank1; PDZ, GKAP, pept 31.8 20 0.00086 14.2 3.6 37 355-392 64-100 (109)
212 1ltq_A Polynucleotide kinase; 31.7 20 0.00086 14.2 5.1 91 280-389 195-295 (301)
213 2uzc_A Human pdlim5, PDZ and L 31.2 21 0.00088 14.1 3.9 39 355-394 46-84 (88)
214 1ihj_A INAD; intermolecular di 31.1 21 0.00088 14.1 3.1 38 355-393 57-94 (98)
215 1fs1_B SKP1, cyclin A/CDK2-ass 31.0 21 0.00088 14.1 2.7 25 359-385 37-61 (141)
216 2d90_A PDZ domain containing p 30.9 21 0.00089 14.1 4.4 42 354-396 48-89 (102)
217 1u37_A Amyloid beta A4 precurs 30.7 21 0.00089 14.1 3.7 38 355-392 49-87 (89)
218 1b8q_A Protein (neuronal nitri 30.6 21 0.00089 14.0 2.7 41 356-396 54-95 (127)
219 2f5y_A Regulator of G-protein 30.6 21 0.0009 14.0 3.5 39 354-393 42-80 (91)
220 1j58_A YVRK protein; cupin, de 30.3 22 0.0009 14.0 4.3 47 186-232 86-135 (385)
221 3hpk_A Protein interacting wit 30.1 22 0.00091 14.0 3.1 39 354-393 64-102 (125)
222 1ml4_A Aspartate transcarbamoy 29.6 22 0.00093 13.9 5.0 91 295-401 104-195 (308)
223 2i04_A Membrane-associated gua 29.3 22 0.00094 13.9 3.6 38 355-392 45-83 (85)
224 1va8_A Maguk P55 subfamily mem 28.9 23 0.00095 13.8 3.3 38 354-392 67-104 (113)
225 2w4f_A Protein LAP4; structura 28.8 23 0.00096 13.8 3.9 40 355-395 53-92 (97)
226 3m6m_D Sensory/regulatory prot 28.3 23 0.00097 13.8 2.3 32 352-386 9-40 (143)
227 2px0_A Flagellar biosynthesis 28.3 23 0.00098 13.8 6.5 104 299-440 141-251 (296)
228 3daa_A D-amino acid aminotrans 28.2 23 0.00098 13.8 2.0 31 355-385 186-218 (277)
229 3eqz_A Response regulator; str 27.8 23 0.00095 13.8 1.8 28 358-389 4-31 (135)
230 2zgi_A Putative 4-amino-4-deox 27.7 24 0.001 13.7 4.3 26 360-385 172-197 (246)
231 1vb7_A PDZ and LIM domain 2; P 27.5 24 0.001 13.7 4.1 41 354-395 48-88 (94)
232 3ilh_A Two component response 27.4 24 0.001 13.7 3.1 34 354-390 6-40 (146)
233 1t2m_A AF-6 protein; chromosom 26.8 25 0.001 13.6 2.9 39 354-393 51-89 (101)
234 1vzw_A Phosphoribosyl isomeras 26.8 19 0.00079 14.4 1.2 21 220-240 155-175 (244)
235 2rdm_A Response regulator rece 26.8 25 0.001 13.6 3.0 10 357-366 5-14 (132)
236 1rgw_A ZAsp protein; PDZ, cyph 26.7 25 0.001 13.6 2.9 39 354-393 43-81 (85)
237 2kpk_A Membrane-associated gua 26.5 25 0.001 13.6 4.3 41 354-394 62-103 (129)
238 2gzv_A PRKCA-binding protein; 26.5 25 0.001 13.6 3.2 35 356-391 71-105 (114)
239 1kq3_A Glycerol dehydrogenase; 26.2 4.4 0.00018 18.9 -2.1 13 373-385 303-315 (376)
240 1iye_A Branched-chain amino ac 26.1 25 0.0011 13.5 2.0 31 355-385 203-235 (309)
241 1kwa_A Hcask/LIN-2 protein; PD 25.8 26 0.0011 13.5 3.5 38 355-393 45-82 (88)
242 1mb3_A Cell division response 25.7 26 0.0011 13.5 2.3 25 358-385 2-26 (124)
243 2i1n_A Discs, large homolog 3; 25.7 26 0.0011 13.5 3.9 39 354-393 53-91 (102)
244 3lua_A Response regulator rece 25.5 26 0.0011 13.4 2.7 32 357-391 4-35 (140)
245 1xfj_A Conserved hypothetical 25.2 15 0.00063 15.1 0.4 46 368-415 134-184 (261)
246 1qs0_B 2-oxoisovalerate dehydr 25.1 25 0.001 13.6 1.5 48 352-400 263-314 (338)
247 3gsl_A Disks large homolog 4; 25.1 26 0.0011 13.4 2.4 39 356-395 151-189 (196)
248 1v6z_A Hypothetical protein TT 25.0 27 0.0011 13.4 3.2 14 121-134 84-97 (228)
249 1vee_A Proline-rich protein fa 24.9 27 0.0011 13.4 3.7 34 355-391 72-105 (134)
250 1ujv_A Membrane associated gua 24.9 27 0.0011 13.3 3.6 39 354-392 48-87 (96)
251 3e17_A Tight junction protein 24.7 27 0.0011 13.3 3.8 38 355-393 41-78 (88)
252 3mks_A Suppressor of kinetocho 24.3 27 0.0011 13.3 2.4 22 360-383 51-72 (169)
253 1wif_A RSGI RUH-020, riken cDN 24.2 27 0.0011 13.3 4.2 41 354-394 68-109 (126)
254 1dmg_A Ribosomal protein L4; a 24.0 28 0.0012 13.2 2.6 52 338-392 103-156 (225)
255 2rpr_A Flywch-type zinc finger 24.0 28 0.0012 13.2 2.3 23 99-121 8-31 (87)
256 3eme_A Rhodanese-like domain p 23.9 28 0.0012 13.2 3.5 32 356-390 55-86 (103)
257 2qvg_A Two component response 23.4 28 0.0012 13.2 3.8 34 356-392 6-40 (143)
258 1x6d_A Interleukin-16; PDZ dom 23.2 29 0.0012 13.1 2.9 34 355-388 62-95 (119)
259 2vz5_A TAX1-binding protein 3; 23.1 29 0.0012 13.1 2.9 38 356-393 84-121 (139)
260 1sy7_A Catalase 1; heme oxidat 23.0 29 0.0012 13.1 6.0 86 304-398 490-575 (715)
261 3mw9_A GDH 1, glutamate dehydr 22.7 29 0.0012 13.1 5.5 136 273-415 140-296 (501)
262 1wv9_A Rhodanese homolog TT165 22.5 29 0.0012 13.0 3.3 32 355-389 51-82 (94)
263 1f6k_A N-acetylneuraminate lya 22.5 29 0.0012 13.0 5.1 12 11-22 1-12 (293)
264 3dth_A Branched-chain amino ac 22.5 29 0.0012 13.0 2.0 22 364-385 268-289 (372)
265 2dhm_A Protein BOLA; stationar 22.4 29 0.0012 13.0 2.9 93 328-444 3-95 (107)
266 2wiu_B HTH-type transcriptiona 22.1 29 0.0012 13.1 1.4 54 270-323 13-73 (88)
267 1w9e_A Syntenin 1; cell adhesi 21.9 30 0.0013 13.0 4.1 37 355-392 126-162 (166)
268 2q0q_A ARYL esterase; SGNH hyd 21.8 24 0.001 13.7 1.0 12 373-384 111-122 (216)
269 3crn_A Response regulator rece 21.7 30 0.0013 12.9 2.9 24 358-384 4-27 (132)
270 1p6q_A CHEY2; chemotaxis, sign 21.6 31 0.0013 12.9 3.3 29 359-390 8-36 (129)
271 1m1n_B Nitrogenase molybdenum- 21.5 31 0.0013 12.9 8.3 89 300-396 294-398 (522)
272 2o2k_A Methionine synthase; C- 21.3 20 0.00084 14.3 0.4 47 260-306 295-347 (355)
273 1uez_A KIAA1526 protein; PDZ d 21.2 30 0.0013 12.9 1.4 35 354-388 53-87 (101)
274 1wi4_A Synip, syntaxin binding 21.1 31 0.0013 12.9 4.0 39 354-392 60-101 (109)
275 2p2v_A Alpha-2,3-sialyltransfe 21.0 31 0.0013 12.8 2.7 23 368-390 146-168 (288)
276 3f6p_A Transcriptional regulat 20.7 32 0.0013 12.8 2.4 26 357-385 2-27 (120)
277 1q60_A General transcription f 20.4 31 0.0013 12.8 1.3 15 277-291 16-30 (99)
278 3kzd_A TIAM-1, T-lymphoma inva 20.4 32 0.0014 12.7 3.5 37 354-393 53-89 (94)
No 1
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=100.00 E-value=0 Score=1170.98 Aligned_cols=459 Identities=40% Similarity=0.653 Sum_probs=424.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC-EEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 659999818533689999998773158870279999799-6999804871676315044432068767898751222689
Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGN-KFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488)
Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~-~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488)
|||||++++.+++..+++||++|||||||||||++++++ .++.+|++|+|+++|.. ..++.++|++|||||||||+|.
T Consensus 1 CGI~Gi~~~~~~~~~l~~gL~~LQHRGqdsaGIa~~d~~~~~~~~K~~GlV~~vf~~-~~l~~l~G~~gIGH~RYsT~G~ 79 (504)
T 1ecf_A 1 CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEA-RHMQRLQGNMGIGHVRYPTAGS 79 (504)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCH-HHHHHCCSSEEEEEEECCBTTB
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCHHHHHCH-HHHHCCCCCEEEEEEECCCCCC
T ss_conf 969999887726999999998861365102379999489669999779728886460-0142288758999940546899
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHCCC---------CCCHHHHH
Q ss_conf 86002786787469971999996550878999999986-498242343078988989873025---------67056899
Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS-SGAIFQSTSDTEVILHLIARSQKN---------GSCDRFID 163 (488)
Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~-~g~~f~s~sDTEvI~~Li~~~~~~---------~~~e~i~~ 163 (488)
++.+|+|||+.++.. ++++||||||+|+.+|+++|.+ .|..|+++||||+|+|+|++.... ++.+++.+
T Consensus 80 ~s~~naQP~~~~~~~-~ialvhNGnI~N~~eL~~~l~~~~g~~f~s~sDtEvi~~li~~~l~~~~~~~~~~~~~~~ai~~ 158 (504)
T 1ecf_A 80 SSASEAQPFYVNSPY-GITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAA 158 (504)
T ss_dssp CTTSCCSCEEECSSS-CEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCEECCCC-CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 974358997851799-7799955873679999998762168654335642578999999986413454210148999999
Q ss_pred HHHHHHCCEEEEEEEC-CEEEEEEECCCCCEEEEEECC-----CEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCC
Q ss_conf 9986530439999639-979999825665415998269-----5699986120010478741233178707999408984
Q gi|254780336|r 164 SLRHVQGAYAMLALTR-TKLIATRDPIGIRPLIMGELH-----GKPIFCSETCALEITGAKYIRDVENGETIVCELQEDG 237 (488)
Q Consensus 164 ~l~~l~Gayslv~l~~-~~l~~~RDp~GiRPL~~G~~~-----~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g 237 (488)
++++++|+||+++++. ++++++|||+|+||||||+.+ +.|++|||||||+.+|++++|||+|||+++++ ++|
T Consensus 159 ~~~~l~Gays~v~l~~~~~~~a~RDp~GiRPL~iGk~d~~~~~~~~vvASEs~Al~~lg~~~irdv~PGEiv~i~--~~G 236 (504)
T 1ecf_A 159 TNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYIT--EEG 236 (504)
T ss_dssp HHHHCCEEEEEEEEETTTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEE--TTC
T ss_pred HHHHCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEECHHHHHHCCCEEEEECCCCEEEEEE--CCC
T ss_conf 986437866999998079835998369987559985035678835999925377753497289962898799998--999
Q ss_pred EEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 799875307765664200000100247430003728999999999999874-----865677201200120477999999
Q gi|254780336|r 238 FISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKE-----SPVIADIVVPIPDGGVPAAIGYAK 312 (488)
Q Consensus 238 ~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~-----~~~~~DiV~~VPdsg~~aA~gya~ 312 (488)
..+.. +..+.++.++|+|||||||||||+++|++||++|++||++||++ .++++|+|+||||||++||+|||+
T Consensus 237 ~~~~~--~~~~~~~~~~C~FE~IYFaRpdS~~~g~~Vy~~R~~lG~~La~~~~~~~~~~~~dvV~~vPds~~~aA~g~a~ 314 (504)
T 1ecf_A 237 QLFTR--QCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIAR 314 (504)
T ss_dssp CEEEE--ECSSSCCCCCBHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHHHHTTTCCCCEEEECTTTTHHHHHHHHH
T ss_pred CEEEE--ECCCCCCCCCCEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHH
T ss_conf 68999--7457887765458999853786106783589999999999999866541687773653689954899999999
Q ss_pred HCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 81996001001176532101106446777653201343245533893289740353333388899999853997899996
Q gi|254780336|r 313 ESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 313 ~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+||+||+++|+||||+|||||+|+|++|+..|++||||++++|+||+|||||||||||||+|.||++||+||||||||||
T Consensus 315 ~~gip~~~~likn~y~gRtFI~p~~~~R~~~v~~Kl~~~~~~i~gk~ivlvDDSIVRGtT~k~ii~~Lr~aGakeIhvri 394 (504)
T 1ecf_A 315 ILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLAS 394 (504)
T ss_dssp HHTCCBCCCEEECSCCCCCCCCSSSCCCCCCSTTTEEECGGGTTTCCEEEEESCCSSSHHHHHHHHHHHHTTCSSEEEEE
T ss_pred HCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHEECCCEEEEECCHHCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 80963543024540115534487578876520002232342131362799753010264199999999976998899997
Q ss_pred CCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 58980588656500589788854669998899987099778883398999861146666675673201213787668764
Q gi|254780336|r 393 ASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVD 472 (488)
Q Consensus 393 ~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~ 472 (488)
+||||+||||||||||+++||||++ +++|||+++||||||.|||+|+|++||+..+ +..++||+|||||+|||+..|
T Consensus 395 ~sPpi~~pc~yGiD~p~~~eLia~~-~~~eei~~~igadsl~yls~e~l~~ai~~~~--~~~~~~c~~cftG~Yp~~~~~ 471 (504)
T 1ecf_A 395 AAPEIRFPNVYGIDMPSATELIAHG-REVDEIRQIIGADGLIFQDLNDLIDAVRAEN--PDIQQFECSVFNGVYVTKDVD 471 (504)
T ss_dssp SSCCCCSCCCSSCCCCCGGGCTTTT-CCHHHHHHHHTCSEEEECCHHHHHHHHHTTC--TTCCCCBCHHHHCCCTTSCCC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCC-CCHHHHHHHHCCCEEEEECHHHHHHHHCCCC--CCCCCCCCEEECCEECCCCCC
T ss_conf 7898578754525799978986469-9999999985998799645999999865778--876770223454631499979
Q ss_pred HHHHHHHHHH
Q ss_conf 5567446666
Q gi|254780336|r 473 KQSQHNDEEL 482 (488)
Q Consensus 473 ~~~~~~~~~~ 482 (488)
+.++..+|++
T Consensus 472 ~~~~~~~e~~ 481 (504)
T 1ecf_A 472 QGYLDFLDTL 481 (504)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8999999986
No 2
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=0 Score=1155.10 Aligned_cols=458 Identities=46% Similarity=0.781 Sum_probs=433.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf 65999981853368999999877315887027999979969998048716763150444320687678987512226898
Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQ 94 (488)
Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~~ 94 (488)
|||||++++++++..+++||++|||||||||||++.++++++.+|++|+|+++|++ ..++.++|+++|||+||||+|.+
T Consensus 1 CGI~Gi~~~~~~~~~l~~gL~~LQHRGqDsaGIa~~d~~~i~~~K~~G~v~~~f~~-~~~~~l~G~~gIGH~RysT~G~~ 79 (459)
T 1ao0_A 1 CGVFGIWGHEEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQN-GELSKVKGKGAIGHVRYATAGGG 79 (459)
T ss_dssp CEEEEEESCTBHHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTS-SCTTTCCBSEEEEEEECCC----
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCCCHHHHHCC-CCHHCCCCCEEEEEEECCCCCCC
T ss_conf 96999989953199999999986146734345999809989999578858886410-21211788589998675567899
Q ss_pred CCCCCCCEEEEC-CCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEE
Q ss_conf 600278678746-9971999996550878999999986498242343078988989873025670568999986530439
Q gi|254780336|r 95 IIRNVQPLFADL-QVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173 (488)
Q Consensus 95 ~~~n~QPf~~~~-~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Gays 173 (488)
+.+|+|||+.++ ..+++++||||||+|+.+||++|+++|+.|+++||||++++++++....++.+++++++++++|+||
T Consensus 80 s~~naQP~~~~s~~~g~ialahNGnI~N~~eLr~~L~~~G~~f~s~sDtEvi~~li~~~~~~~~~~~i~~~~~~l~Gays 159 (459)
T 1ao0_A 80 GYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYA 159 (459)
T ss_dssp CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCCEECCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
T ss_conf 87677898602489971999982799888999999997699563246507788999985231036777789984157217
Q ss_pred EEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 99963997999982566541599826956999861200104787412331787079994089847998753077656642
Q gi|254780336|r 174 MLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPER 253 (488)
Q Consensus 174 lv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~ 253 (488)
+++++++.++++|||+|+|||+||+.++.|++|||||||+.+|++++|||+|||+++++ ++|..+. +..+..+.+
T Consensus 160 l~il~~~~~~~~RDp~GirPL~~G~~~~~~~vASEs~Al~~lg~~~i~ev~PGEiv~i~--~~g~~~~---~~~~~~~~~ 234 (459)
T 1ao0_A 160 FLIMTETEMIVALDPNGLRPLSIGMMGDAYVVASETCAFDVVGATYLREVEPGEMLIIN--DEGMKSE---RFSMNINRS 234 (459)
T ss_dssp EEEECSSEEEEEECTTCCSCCEEEEETTEEEEESSTHHHHHHTCEEEEECCTTEEEEEE--TTEEEEE---ESCSSCCCC
T ss_pred EEEEECCCCEEEEECCCCCCEEEEEECCEEEEEECHHHHHHCCCEEEEECCCCEEEEEE--CCCCEEE---ECCCCCCCC
T ss_conf 99983897689996489986799970996899951255642596699982898699994--6885343---036788766
Q ss_pred EEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEE
Q ss_conf 00000100247430003728999999999999874865677201200120477999999819960010011765321011
Q gi|254780336|r 254 MCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFI 333 (488)
Q Consensus 254 ~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI 333 (488)
+|+|||||||||||+++|++||++|++||+.||++.++++|+|+||||||++||+|||+++|+||+++|+||||+|||||
T Consensus 235 ~C~FE~iYfsrpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DvV~~VPds~~~aa~gya~~~gip~~~~likn~y~~RtFI 314 (459)
T 1ao0_A 235 ICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESAVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFI 314 (459)
T ss_dssp EEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHCCCCSEEECCTTTTHHHHHHHHHHHCCCBCCCEEECTTCCTTSC
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHCEEECCCHHHHCC
T ss_conf 66178764036753115536999999999977333775782784257763888999998709971334242120143226
Q ss_pred ECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHH
Q ss_conf 06446777653201343245533893289740353333388899999853997899996589805886565005897888
Q gi|254780336|r 334 EPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTAL 413 (488)
Q Consensus 334 ~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eL 413 (488)
+|+|+.|+..|++||||++++|+||+|||||||||||||+|.||+|||+|||||||||||||||+||||||||||+++||
T Consensus 315 ~p~~~~r~~~v~~k~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~~Gakevh~~~~sPpi~~pc~yGid~~~~~el 394 (459)
T 1ao0_A 315 QPSQALREQGVRMKLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEEL 394 (459)
T ss_dssp CCCHHHHHHTCCSSEEECHHHHTTCEEEEEESCCSSSHHHHHHHHHHHHTTCSEEEEEESSCCCCSCCCSCTTTCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 97388999988766554487744670699953210130289999999747998899997889736765564678997899
Q ss_pred HHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 5466999889998709977888339899986114666667567320121378766876455674466
Q gi|254780336|r 414 LANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDE 480 (488)
Q Consensus 414 ia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~ 480 (488)
||++ +++|||+++||||||.|||+|+|++||+. +.+....++|++||||+|||++++++....+|
T Consensus 395 ia~~-~~~eei~~~ig~dsl~y~s~e~l~~a~~~-~~~~~~~~~c~~cftG~yp~~~~~~~~~~~~~ 459 (459)
T 1ao0_A 395 IASS-HSVEEIRQEIGADTLSFLSVEGLLKGIGR-KYDDSNCGQCLACFTGKYPTEIYQDTVLPHVK 459 (459)
T ss_dssp STTT-SCHHHHHHHHTCSEEEECCHHHHHHHHTC-CCSSTTTTEECHHHHSCCSSCCCSSCCCGGGC
T ss_pred HHCC-CCHHHHHHHHCCCEEEECCHHHHHHHHCC-CCCCCCCCCCCEEECCCCCCCCCCHHHHHHCC
T ss_conf 7579-99999999869987996279999998576-55776667376762783268897466574349
No 3
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X*
Probab=100.00 E-value=0 Score=383.54 Aligned_cols=259 Identities=25% Similarity=0.375 Sum_probs=207.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 65999981853368999999877315887027999979-96999804871676315044432068767898751222689
Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNG-NKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488)
Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~-~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488)
|||||+++++++...+++||.+|||||||||||++.++ +++...|+.|+|++++++ ...+.++|++|||||||+|+|.
T Consensus 1 CGI~g~~~~~~~~~~~~~gl~~L~~RG~dsaGia~~~~~~~i~~~k~~g~v~~~~~~-~~~~~~~g~~~igHtR~aT~G~ 79 (608)
T 2bpl_A 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQA-AEEHPLHGGTGIAHTRWATHGE 79 (608)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHH-HHHSCCCCSEEEEEEECCCSSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHH-HHCCCCCCCEEEEECCCCCCCC
T ss_conf 969999837648999999999840647223669999289978999558888999735-3013689988886777778999
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCC
Q ss_conf 86002786787469971999996550878999999986498242343078988989873025--6705689999865304
Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKN--GSCDRFIDSLRHVQGA 171 (488)
Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~--~~~e~i~~~l~~l~Ga 171 (488)
++..|+||+.. +++++||||+|+||.+||++|+++|+.|+|+||||||+||+.+.... ++.+++.+++++++|+
T Consensus 80 ~~~~nahP~~~----~~~~~vhNG~i~N~~~lr~~l~~~g~~f~s~tDtEvi~~li~~~~~~~~~~~~a~~~~~~~l~G~ 155 (608)
T 2bpl_A 80 PSEVNAHPHVS----EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGA 155 (608)
T ss_dssp CCGGGCSCEEE----TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSS
T ss_pred CCCCCCCCCCC----CCEEEEECCCHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 87458999725----99999978703389999999985798056663088998989876503763689999999845572
Q ss_pred EEEEEEEC---CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf 39999639---979999825665415998269569998612001047874123317870799940898479987530776
Q gi|254780336|r 172 YAMLALTR---TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248 (488)
Q Consensus 172 yslv~l~~---~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~ 248 (488)
||+++++. +.++++|. .+||++|+.++.+++|||.+||....-+++ .+++||++++. .++.. +......+
T Consensus 156 ~a~~~~~~~~p~~i~~~r~---gsPL~iG~~~~~~~vaSd~~al~~~t~~~~-~l~dgei~~i~--~~~~~-i~~~~~~~ 228 (608)
T 2bpl_A 156 YGTVIMDSRHPDTLLAARS---GSPLVIGLGMGENFIASDQLALLPVTRRFI-FLEEGDIAEIT--RRSVN-IFDKTGAE 228 (608)
T ss_dssp EEEEEEETTCTTCEEEEEE---BSCCEEEECSSCEEEESSGGGTTTTCCEEE-ECCTTCEEEEC--SSCEE-EECSSSCB
T ss_pred EEEEEEECCCCCEEEEECC---CCCEEEEECCCCEEEECCHHHHHHHCCEEE-EECCCCEEEEE--ECCCE-EECCCCCC
T ss_conf 2599985599988999989---997699972897499567144454257499-90799689997--41305-63022344
Q ss_pred CCCCCEEEEEHHC--CCC-CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5664200000100--247-4300037289999999999998
Q gi|254780336|r 249 TSPERMCIFEYVY--FAR-PDSIISGRSIYVSRRNMGKNLA 286 (488)
Q Consensus 249 ~~~~~~C~FEyIY--Far-pdS~~~g~~Vy~~R~~lG~~La 286 (488)
..+... ..++-. -.+ +-.-+--+.+|+--..+.+.|.
T Consensus 229 ~~~~~~-~~~~~~~~~~kg~y~hfm~KEI~EQp~~i~~~l~ 268 (608)
T 2bpl_A 229 VKRQDI-ESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLT 268 (608)
T ss_dssp CCCCCE-ECCSCTTTTCCTTCSSHHHHHHHTHHHHHHHHHT
T ss_pred CCCCEE-EEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHHC
T ss_conf 554059-9723421122567268887656347377764430
No 4
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=0 Score=380.41 Aligned_cols=219 Identities=25% Similarity=0.388 Sum_probs=193.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC-CEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 65999981853368999999877315887027999979-96999804871676315044432068767898751222689
Q gi|254780336|r 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNG-NKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTTGD 93 (488)
Q Consensus 15 CGI~Gi~~~~~~~~~~~~gL~~LQHRGqdsaGIa~~d~-~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~G~ 93 (488)
|||||++++++++..+++||.+|||||||||||+++++ +.+..+|+.|.+.+++.. ...+.++|+++|||+||+|.|.
T Consensus 1 CGI~Gi~~~~~~~~~l~~~L~~LqhRG~DsaGi~~~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~g~~~iGH~R~aT~g~ 79 (240)
T 1xff_A 1 CGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQA-AEEHPLHGGTGIAHTRWATHGE 79 (240)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHH-HHHSCCCCSEEEEEEECCSSSC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHH-HHCCCCCCCEEEEECCCCCCCC
T ss_conf 949999999206999999998625558372568999189979999614653101112-2114668857887511333698
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHCC
Q ss_conf 860027867874699719999965508789999999864982423430789889898730--256705689999865304
Q gi|254780336|r 94 QIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQ--KNGSCDRFIDSLRHVQGA 171 (488)
Q Consensus 94 ~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~--~~~~~e~i~~~l~~l~Ga 171 (488)
.+..|+||+.. ++++++|||+|+|+.+||++|+++|+.|++++|||+|++|+++.. ..++.+++.+++++++|+
T Consensus 80 ~s~~n~~P~~~----~~~~~vhNG~I~N~~~L~~~l~~~g~~f~s~~DtEvi~~l~~~~~~~~~~~~e~i~~~~~~l~G~ 155 (240)
T 1xff_A 80 PSEVNAHPHVS----EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGA 155 (240)
T ss_dssp SSTTTSSCEEE----TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEE
T ss_pred CCCCCCCCCCC----CCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 75457760027----98999983588779999999997699644467779999999999873989999999999872585
Q ss_pred EEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEE
Q ss_conf 3999963997999982566541599826956999861200104787412331787079994089847998
Q gi|254780336|r 172 YAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISI 241 (488)
Q Consensus 172 yslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i 241 (488)
||+++++.+....+||+.|.||||||+.++.++||||++||..++.+++ .|+|||++. ++.++...+
T Consensus 156 ~a~~i~~~~~~~~i~~~r~~rPL~~g~~~~~~~~aSE~~al~~~~~~~~-~l~~gei~~--i~~~~i~i~ 222 (240)
T 1xff_A 156 YGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFI-FLEEGDIAE--ITRRSVNIF 222 (240)
T ss_dssp EEEEEEETTCTTCEEEEEEBSCCEEEECSSCEEEESSGGGTTTTCSEEE-ECCTTCEEE--ECSSCEEEE
T ss_pred CEEHHHCCCCCCEEEEECCCCCEEEEECCCCCEECCCHHHHHHHCCEEE-EECCCEEEE--ECCCEEEEE
T ss_conf 3102013799888999889984499976886503163687886276799-978985999--908979999
No 5
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=8.7e-31 Score=237.60 Aligned_cols=240 Identities=24% Similarity=0.290 Sum_probs=169.3
Q ss_pred EEEEEECCCC-H---HHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHHHCCCHHHHHHCCCCEEEEEEECCCC
Q ss_conf 5999981853-3---68999999877315887027999979969998048716763150444320687678987512226
Q gi|254780336|r 16 GVFGILGHPD-A---ATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETLSLLPGNMAIGHVRYSTT 91 (488)
Q Consensus 16 GI~Gi~~~~~-~---~~~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~dvf~~~~~l~~l~G~~~IGHvRYsT~ 91 (488)
||+||++... . ...+..|..+|+|||+|+.|+.. .+++++||+|.|+.
T Consensus 2 ~I~gi~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~----------------------------~~~~~lgh~RLsI~ 53 (553)
T 1ct9_A 2 SIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYA----------------------------SDNAILAHERLSIV 53 (553)
T ss_dssp EEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEE----------------------------CSSEEEEEEECCCS
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE----------------------------ECCEEEEEEEEEEC
T ss_conf 39999937888088999999999985275998888698----------------------------49989999733221
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 89860027867874699719999965508789999999864982423430789889898730256705689999865304
Q gi|254780336|r 92 GDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGA 171 (488)
Q Consensus 92 G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e~i~~~l~~l~Ga 171 (488)
+.+. ..|||. +..+++++++||+|+|+.+||++|. .++.|.|+||||||++++.+.- .+++++++|.
T Consensus 54 d~~~--g~QP~~--~~~~~~~lv~NGEIYN~~eLr~~L~-~~~~f~t~sDtEvll~ly~~~G--------~~~~~~L~Gm 120 (553)
T 1ct9_A 54 DVNA--GAQPLY--NQQKTHVLAVNGEIYNHQALRAEYG-DRYQFQTGSDCEVILALYQEKG--------PEFLDDLQGM 120 (553)
T ss_dssp CTTT--CCSSEE--CTTSCEEEEEEEEETTHHHHHHHHT-TTSCCCSCCTTHHHHHHHHHHT--------TTTGGGCCEE
T ss_pred CCCC--CCCCCC--CCCCCEEEEEEEEEECHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHC--------HHHHHHHCCC
T ss_conf 7998--999886--4999989999989706899999885-4897178985999999999979--------8999982671
Q ss_pred EEEEEEEC--CEEEEEEECCCCCEEEEEECCCEEEE-EECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf 39999639--97999982566541599826956999-8612001047874123317870799940898479987530776
Q gi|254780336|r 172 YAMLALTR--TKLIATRDPIGIRPLIMGELHGKPIF-CSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPS 248 (488)
Q Consensus 172 yslv~l~~--~~l~~~RDp~GiRPL~~G~~~~~~v~-ASEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~ 248 (488)
||+++.+. ++++++||++|+|||+|+..+++.+| +||..++. ..+..++.+.||..+.. .+|......+..
T Consensus 121 FAfai~D~~~~~l~laRD~~GiKPLyy~~~~~~~~f~s~~~~~l~-~~~~~~~~~ppg~~~~~---~~g~~~~~~~~~-- 194 (553)
T 1ct9_A 121 FAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALV-PVCRTIKEFPAGSYLWS---QDGEIRSYYHRD-- 194 (553)
T ss_dssp EEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTT-TTCSEEEECCTTEEEET---TTCSEEECCCCG--
T ss_pred EEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEECHHHHCCC-CCCCCEEECCCCEEEEE---CCCCEEEEECCC--
T ss_conf 799998066756999747752111068863798054201220124-21131265277338984---189611430123--
Q ss_pred CCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHHHHHCC
Q ss_conf 5664200000100247430003728999999999999874865677---201200120477999999819
Q gi|254780336|r 249 TSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD---IVVPIPDGGVPAAIGYAKESG 315 (488)
Q Consensus 249 ~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D---iV~~VPdsg~~aA~gya~~~g 315 (488)
++..+...-....+...|..+-....+.-..+.. ..+|=-||+..+|+. ++...
T Consensus 195 ------------~~~~~~~~~~~~~~~~~~~lL~~aV~~rl~sdvpvg~~LSGGlDSSlIaal~-~k~~~ 251 (553)
T 1ct9_A 195 ------------WFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAIT-KKYAA 251 (553)
T ss_dssp ------------GGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHH-HHHC-
T ss_pred ------------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH-HHHHC
T ss_conf ------------3444445430556999999999997556508875147736997439999999-98631
No 6
>3mdn_A Glutamine amidotransferases class-II domain prote; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=100.00 E-value=4.6e-32 Score=246.71 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=161.1
Q ss_pred HCCEEEEEECCCC-HHHHHHHHHHHH---HCC-----CC---CEEEEEEEEC-CEEEEEECCCCH-HH-HCCCHHHHHHC
Q ss_conf 1565999981853-368999999877---315-----88---7027999979-969998048716-76-31504443206
Q gi|254780336|r 13 EKCGVFGILGHPD-AATLTAIGLHAL---QHR-----GQ---EATGIISFNG-NKFHSERHLGLV-GD-HFTKPETLSLL 77 (488)
Q Consensus 13 ~eCGI~Gi~~~~~-~~~~~~~gL~~L---QHR-----Gq---dsaGIa~~d~-~~i~~~K~~GlV-~d-vf~~~~~l~~l 77 (488)
.||+|+|+.+.+. +...++...++| ++| |. |||||+++++ +....+|..... .+ .| ....+.+
T Consensus 2 ~MCri~g~~g~~~~~~~~l~~~~~sl~~qs~~~~~~~~~~~~DGwGia~y~~~~~~~~~~~~~~a~~d~~~--~~~~~~~ 79 (274)
T 3mdn_A 2 SLCRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDVYPAWSDPNL--RAVAHHV 79 (274)
T ss_dssp --CCEEEEEEEEEEGGGTC------------------------CEEEEEESSSSSCEEEEESSCGGGCHHH--HHHHHHC
T ss_pred CCCCEEEEECCCCCHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHH--HHHHHCC
T ss_conf 52438999889625677764612478884120024576416987879999699968999647444328657--8765346
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCC-----CCCCCCCCHHHHHHHHHHH
Q ss_conf 87678987512226898600278678746997199999655087899999998649-----8242343078988989873
Q gi|254780336|r 78 PGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG-----AIFQSTSDTEVILHLIARS 152 (488)
Q Consensus 78 ~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g-----~~f~s~sDTEvI~~Li~~~ 152 (488)
++.++|||+||+|.|..+.+|+|||.. +++++||||+|.|+.+||++|.... ..+.++||||++++++...
T Consensus 80 ~s~~~igH~R~AT~G~~~~~N~HPF~~----~~~~faHNG~i~n~~~lr~~L~~~~~~~~~~~~~g~TDSE~~f~~ll~~ 155 (274)
T 3mdn_A 80 RSGLFLSHVRASTGSCISRNNCHPFAA----RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSE 155 (274)
T ss_dssp EEEEEEEEC------------CCCEEE----TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEE----CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 775899999626678987346698473----8999997675259999999998333743344567760799999999998
Q ss_pred -CCCCCCHHHHHHHHHHHC-----------CEEEEEEECCEEEEEEECCCCCEEEEE----ECCCEEEEEECCHHCCCCC
Q ss_conf -025670568999986530-----------439999639979999825665415998----2695699986120010478
Q gi|254780336|r 153 -QKNGSCDRFIDSLRHVQG-----------AYAMLALTRTKLIATRDPIGIRPLIMG----ELHGKPIFCSETCALEITG 216 (488)
Q Consensus 153 -~~~~~~e~i~~~l~~l~G-----------ayslv~l~~~~l~~~RDp~GiRPL~~G----~~~~~~v~ASEs~Al~~ig 216 (488)
...+..+.+.+++..+.+ ++++++.+++.||++||+.|.||++++ ..++.++||||+++++.
T Consensus 156 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~n~ll~dg~~l~a~r~~~~~~p~~l~~~~~~~~~~~~vaSE~l~~~~-- 233 (274)
T 3mdn_A 156 GLEHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDGQTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEPLETDE-- 233 (274)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECSSCEEEEEEESSSCCCCCEEEEETTTTEEEEESSCC--CC--
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCCCCC--
T ss_conf 753897788999999999988753425663068997479989999868998774010034048988999978760798--
Q ss_pred CCEEEECCCCEEEEEEECCCCEEEEEEE
Q ss_conf 7412331787079994089847998753
Q gi|254780336|r 217 AKYIRDVENGETIVCELQEDGFISIDSY 244 (488)
Q Consensus 217 ~~~irdv~PGEiivi~~~~~g~~~i~~~ 244 (488)
+.+++|+|||+++++ .+|... +.+
T Consensus 234 -~~W~~v~~ge~l~v~--~~g~~~-~~~ 257 (274)
T 3mdn_A 234 -GDWTELRPGRMLTIG--AEGAAE-RDF 257 (274)
T ss_dssp -SCCEECCSSEEEEEE--TTEEEE-EEC
T ss_pred -CCEEEECCCEEEEEE--CCCEEE-EEC
T ss_conf -897997998089996--896699-952
No 7
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.97 E-value=8.5e-32 Score=244.79 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=145.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCC------CCEEEEEEEECCEEEEEECCCC--HHHHCCCHHHHHHCCCCEEEEE
Q ss_conf 5659999818533689999998773158------8702799997996999804871--6763150444320687678987
Q gi|254780336|r 14 KCGVFGILGHPDAATLTAIGLHALQHRG------QEATGIISFNGNKFHSERHLGL--VGDHFTKPETLSLLPGNMAIGH 85 (488)
Q Consensus 14 eCGI~Gi~~~~~~~~~~~~gL~~LQHRG------qdsaGIa~~d~~~i~~~K~~Gl--V~dvf~~~~~l~~l~G~~~IGH 85 (488)
||||||+.++.... +..+|..||||| +|||||++++++.+.++|..+. .+++|.. .....++|+++|||
T Consensus 1 MCrl~g~~~~~p~~--~~~~l~~l~~rg~~~~~~~DGwGia~~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~s~~~igH 77 (257)
T 1te5_A 1 MCELLGMSANVPTD--IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARL-VQRFPIKSETVIGH 77 (257)
T ss_dssp -CCEEEEEEEEEEE--CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHH-HHHSCCEEEEEEEE
T ss_pred CCCEEEEECCCCHH--HHHHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCHHHHH-HHHCCCCCCEEEEE
T ss_conf 98289998699615--9999999986788678888736999997993799982764403555666-64166678579999
Q ss_pred EECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-----CCCC--
Q ss_conf 512226898600278678746997199999655087899999998649824234307898898987302-----5670--
Q gi|254780336|r 86 VRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQK-----NGSC-- 158 (488)
Q Consensus 86 vRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~-----~~~~-- 158 (488)
+||+|.|..+.+|+|||...+..+.++++|||+|+|+.+|+..|. +..++|||.+.+++..... ....
T Consensus 78 vR~aT~G~~~~~n~hPf~~~~~~~~~~~aHNG~i~n~~~l~~~l~-----~~g~tdse~~~~~ll~~l~~~~~~~~~~~~ 152 (257)
T 1te5_A 78 IRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYR-----PVGETDSEAAFCDLLNRVRRAFPEPVPVEV 152 (257)
T ss_dssp EEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCCCCCSSC-----CSSCCHHHHHHHHHHHHHHHHCSSCCCHHH
T ss_pred EEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEEECCHHHHHHHE-----EECCCCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 850456887645678867965998899998577845367645335-----125456715399999999973887772889
Q ss_pred --HHHHHHHHHHHCCEEE--EEEECCEEEEE--------EECCCCCEEEEEEC-------------CCEEEEEECCHHCC
Q ss_conf --5689999865304399--99639979999--------82566541599826-------------95699986120010
Q gi|254780336|r 159 --DRFIDSLRHVQGAYAM--LALTRTKLIAT--------RDPIGIRPLIMGEL-------------HGKPIFCSETCALE 213 (488)
Q Consensus 159 --e~i~~~l~~l~Gaysl--v~l~~~~l~~~--------RDp~GiRPL~~G~~-------------~~~~v~ASEs~Al~ 213 (488)
+.+...++.+.+.+++ ++.+++.++++ +++.+..|+.+... +..++||||. |+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvASEp--l~ 230 (257)
T 1te5_A 153 LLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP--LT 230 (257)
T ss_dssp HHHHHHHHHHHHHTTBCCEEEEESSSCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC--SS
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCCCEEEEECCCCCCEEECCCCCCEEEECCCCCCCCEEEEEECC--CC
T ss_conf 9999999998641252799976177669999559924999358987401026886377751102899789999152--47
Q ss_pred CCCCCEEEECCCCEEEEEE
Q ss_conf 4787412331787079994
Q gi|254780336|r 214 ITGAKYIRDVENGETIVCE 232 (488)
Q Consensus 214 ~ig~~~irdv~PGEiivi~ 232 (488)
+.+.+++|+|||+++++
T Consensus 231 --~~~~w~~l~~Ge~vv~~ 247 (257)
T 1te5_A 231 --DNENWTLQQSGEWVLWW 247 (257)
T ss_dssp --SSSSCEEECTTCEEEEE
T ss_pred --CCCCEEEECCCEEEEEE
T ss_conf --99898996998499998
No 8
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.95 E-value=2.2e-27 Score=213.32 Aligned_cols=202 Identities=20% Similarity=0.186 Sum_probs=146.6
Q ss_pred CCCEEEEEEECCCCCCCC------CCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 876789875122268986------00278678746997199999655087899999998649824234307898898987
Q gi|254780336|r 78 PGNMAIGHVRYSTTGDQI------IRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIAR 151 (488)
Q Consensus 78 ~G~~~IGHvRYsT~G~~~------~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~ 151 (488)
.|..+|||.|+++..... ...+||+ ..|++++++||+|+|+.+||++| +..|.|+||||||++++.+
T Consensus 36 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~lvfNGEIYN~~eLr~~l---~~~f~t~sDtEvil~ly~~ 108 (513)
T 1jgt_A 36 DIDTPQGERSLAATLVHAPSVAPDRAVARSL----TGAPTTAVLAGEIYNRDELLSVL---PAGPAPEGDAELVLRLLER 108 (513)
T ss_dssp ECCCTTGGGSCEEEEEECTTSCGGGGEEEEC----SSSSEEEEEEEEESCHHHHHHTS---CSSCCCSSHHHHHHHHHHH
T ss_pred CCCEEECCCEEEEEECCCCCCCCCCCCCCCC----CCCCEEEEEEEECCCHHHHHHHH---CCCCCCCCHHHHHHHHHHH
T ss_conf 7773122331455513666668764446757----89999999976603899999985---8888999859999999999
Q ss_pred HCCCCCCHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCC---------------C
Q ss_conf 3025670568999986530439999639979999825665415998269569998612001047---------------8
Q gi|254780336|r 152 SQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCALEIT---------------G 216 (488)
Q Consensus 152 ~~~~~~~e~i~~~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~i---------------g 216 (488)
.- .+++++++|.||+++.++++++++||++|+|||+|+..++.++||||-.||-.. .
T Consensus 109 ~G--------~~~l~~L~GmFAfai~D~~~l~laRD~~GiKPLyy~~~~~~~~FaSEikaL~~~~~~~~~~~~~~~~~t~ 180 (513)
T 1jgt_A 109 YD--------LHAFRLVNGRFATVVRTGDRVLLATDHAGSVPLYTCVAPGEVRASTEAKALAAHRDPKGFPLADARRVAG 180 (513)
T ss_dssp HG--------GGGGGTCCEEEEEEEEETTEEEEEECTTCCSCCEEEEETTEEEEESCHHHHHTC--CCCCCCTTSEECSS
T ss_pred HH--------HHHHHHCCEEEEEEEEECCEEEEEECCCCCCCEEEEEECCEEEEEECHHHHHHCCCCCCCCCCCHHHCCC
T ss_conf 73--------8899771814799999899999998889885759998699689996578897476643464210010103
Q ss_pred CCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--
Q ss_conf 741233178707999408984799875307765664200000100247430003728999999999999874865677--
Q gi|254780336|r 217 AKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD-- 294 (488)
Q Consensus 217 ~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D-- 294 (488)
++.|+.|+||+++.++.++ +......+..+...+. ..-+...+.+.|..+-+...+.-..+..
T Consensus 181 f~~I~~lpPG~~l~i~~~~-~~~~~~~yw~~~~~~~--------------~~~~~e~~~~l~~~L~~aV~~rl~sd~~vg 245 (513)
T 1jgt_A 181 LTGVYQVPAGAVMDIDLGS-GTAVTHRTWTPGLSRR--------------ILPEGEAVAAVRAALEKAVAQRVTPGDTPL 245 (513)
T ss_dssp CSSCEECCTTEEEEEETTT-TEEEEEECCCCCCSCB--------------CCCHHHHHHHHHHHHHHHHHHHSCTTCCCE
T ss_pred CCCEEEECCCEEEEEECCC-CCCCEEECCCCCCCCC--------------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 0536980794699851367-7530353156543335--------------799899999999999877776335788876
Q ss_pred -CCCCCCCCHHHHHHH
Q ss_conf -201200120477999
Q gi|254780336|r 295 -IVVPIPDGGVPAAIG 309 (488)
Q Consensus 295 -iV~~VPdsg~~aA~g 309 (488)
..+|=-||+..+|+.
T Consensus 246 ~~LSGGlDSSlIaala 261 (513)
T 1jgt_A 246 VVLSGGIDSSGVAACA 261 (513)
T ss_dssp EECCSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
T ss_conf 9778983449999987
No 9
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.92 E-value=1.8e-24 Score=192.70 Aligned_cols=207 Identities=13% Similarity=0.050 Sum_probs=137.7
Q ss_pred CEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 67898751222689860027867874699719999965508789999999864982423430789889898730256705
Q gi|254780336|r 80 NMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNGSCD 159 (488)
Q Consensus 80 ~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~N~~eLr~~L~~~g~~f~s~sDTEvI~~Li~~~~~~~~~e 159 (488)
..+++|.|....+.. ..|||..+ +.++++||+|+|+.+||++|...|+.|.|.||||||++++.+.-
T Consensus 27 ~~~l~~~~l~i~~~~---~~QP~~~~----~~~~~~nGEIYN~~eLr~~l~~~~~~f~t~SDtEVll~ly~~~G------ 93 (503)
T 1q15_A 27 GEALSNGYLFIEQNG---HYQKCEME----RGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLG------ 93 (503)
T ss_dssp EEEETTEEEEEETTC---CEEEEECS----SSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHHC------
T ss_pred CEEECCCEEEEECCC---CCCCCCCC----CEEEEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH------
T ss_conf 103115558983588---87996769----98999999861899999999757985588985999999999985------
Q ss_pred HHHHHHHHHHCCEEEEEEEC-CEEEEEEECCCCCEEEEEECCCEEEEEECCHHCCCCC----------------------
Q ss_conf 68999986530439999639-9799998256654159982695699986120010478----------------------
Q gi|254780336|r 160 RFIDSLRHVQGAYAMLALTR-TKLIATRDPIGIRPLIMGELHGKPIFCSETCALEITG---------------------- 216 (488)
Q Consensus 160 ~i~~~l~~l~Gayslv~l~~-~~l~~~RDp~GiRPL~~G~~~~~~v~ASEs~Al~~ig---------------------- 216 (488)
.+++++++|+||+++.+. ++++++||++|+|||+|.+.++.+++|||..++...+
T Consensus 94 --~~~l~~L~GmFAfai~~~~~~l~laRD~~G~KPLYY~~~~~~~~~Ss~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (503)
T 1q15_A 94 --ANALALAEGDFCFFIDEPNGELTVITESRGFSPVHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTY 171 (503)
T ss_dssp --GGGGGGCCSSEEEEEECTTSCEEEEECSSSSSCCEEEESSSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTC
T ss_pred --HHHHHHHCEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf --888977077789999968995999986788745799956987998464789744776666636578999745688998
Q ss_pred --CCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf --741233178707999408984799875307765664200000100247430003728999999999999874865677
Q gi|254780336|r 217 --AKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIAD 294 (488)
Q Consensus 217 --~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~D 294 (488)
++.|+.|+||++++++.+..+......+........ ...+.-...-+...|..+-...... ...|
T Consensus 172 T~f~~I~~l~PG~~l~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~e~~~~~~~~~l~~av~~~--l~sd 238 (503)
T 1q15_A 172 TPVKNAQRLKPGAVHVLTHDSEGYSFVESRTLTTPASN-----------QLLALPREPLLALIDRYLNAPLEDL--APRF 238 (503)
T ss_dssp CSBTTEEECCSSEEEEEEECTTCCEEEEEEESCCCCCC-----------SCBCCCHHHHHHHHHHHHHHHHHHH--GGGC
T ss_pred CCCCCCEECCCCCEEEEECCCCEEEEEECCCCCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH--CCCC
T ss_conf 87767266488735999538830343201234564322-----------1246899999999999999999996--2689
Q ss_pred CCC-----CCCCCHHHHHHHHHHHCCC
Q ss_conf 201-----2001204779999998199
Q gi|254780336|r 295 IVV-----PIPDGGVPAAIGYAKESGI 316 (488)
Q Consensus 295 iV~-----~VPdsg~~aA~gya~~~gi 316 (488)
+-+ |==||+.++|+ +...+.
T Consensus 239 ~pvg~~LSGGlDSSlIaal--a~~~~~ 263 (503)
T 1q15_A 239 DTVGIPLSGGLDSSLVTAL--ASRHFK 263 (503)
T ss_dssp SEEEEECCSSHHHHHHHHH--HTTTCS
T ss_pred CCEEEEECCCCCHHHHHHH--HHHHCC
T ss_conf 8568980587427999999--875135
No 10
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=99.89 E-value=1.6e-25 Score=200.16 Aligned_cols=201 Identities=17% Similarity=0.184 Sum_probs=156.2
Q ss_pred EEEECCCCCEEEEEECCCEEEEE----ECCHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEH
Q ss_conf 99825665415998269569998----61200104787412331787079994089847998753077656642000001
Q gi|254780336|r 184 ATRDPIGIRPLIMGELHGKPIFC----SETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEY 259 (488)
Q Consensus 184 ~~RDp~GiRPL~~G~~~~~~v~A----SEs~Al~~ig~~~irdv~PGEiivi~~~~~g~~~i~~~~~~~~~~~~~C~FEy 259 (488)
....|++++||.+.. +.|..| ||+.++-.-.++ +...|++..+.-...|.+-+ .......+.|.||+
T Consensus 16 l~~~p~~~~~l~~~~--~~~~~aks~iSed~~i~~~~~~---~~~~g~i~~~~g~~gg~~~i----p~~~~~~~~~~~~~ 86 (291)
T 1o57_A 16 LLTHPHELIPLTFFS--ERYESAKSSISEDLTIIKQTFE---QQGIGTLLTVPGAAGGVKYI----PKMKQAEAEEFVQT 86 (291)
T ss_dssp HHTSTTCCBCHHHHH--HHTTCCHHHHHHHHHHHHHHHH---HTTSEEEEEECSTTCEEEEE----ECCCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH---HCCCCEEEEECCCCEEEEEE----CCCCHHHHHHHHHH
T ss_conf 971998626389999--9861201133018999999875---44887099968974169996----78887889999999
Q ss_pred H--CCCCCCCCCCCHHHH--------HHHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCC
Q ss_conf 0--024743000372899--------9999999999874-8656772012001204779999998199600100117653
Q gi|254780336|r 260 V--YFARPDSIISGRSIY--------VSRRNMGKNLAKE-SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYV 328 (488)
Q Consensus 260 I--YFarpdS~~~g~~Vy--------~~R~~lG~~La~~-~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~ 328 (488)
+ ||+|||+++.|..+| +.++++|+.||++ .+.++|+|+++|.+|+|.|..+|.++|+||..+..+|++.
T Consensus 87 l~~~l~~~~rilpG~~vy~s~ll~dP~~l~~lG~~lA~~~~~~~iD~Vvgv~~~GiplA~~vA~~LgvP~v~~rk~~k~~ 166 (291)
T 1o57_A 87 LGQSLANPERILPGGYVYLTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVT 166 (291)
T ss_dssp HHHHHTCGGGEETTTEECCTTTTTCHHHHHHHHHHHHHHTTTSCCSEEEEETTTTHHHHHHHHHHHTCCEEEEBCC----
T ss_pred HHHHHCCCCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99996599952588568756640699999999999999737789979993175669999999999699979999604778
Q ss_pred CCEEEECCHHHHHHHHHHCCCCCH-HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 210110644677765320134324-55338932897403533333888999998539978999965
Q gi|254780336|r 329 GRTFIEPSHHIRAFGVKLKHSANR-TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 329 gRtFI~p~~~~R~~~v~~K~~~~~-~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+++|+.+++..+......+++..+ ...+|+||+||||+|.+|+|++.++++||++||+-+.+.+-
T Consensus 167 ~~~~i~~~~~s~~~~~~~~~~~~~~~l~~g~rVLIVDDvi~tG~T~~~~i~llre~GA~vvgi~Vl 232 (291)
T 1o57_A 167 EGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVL 232 (291)
T ss_dssp -CCEEEEEEECSSCCSEEEEEEEGGGSCTTCEEEEEEEEESSSHHHHHHHHHTGGGTCEEEEEEEE
T ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 985699988714476422565112335788569984242332778999999999879979999999
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.73 E-value=2e-15 Score=128.25 Aligned_cols=198 Identities=19% Similarity=0.148 Sum_probs=127.6
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCHHH---HCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 99999987731588702799997996999804871676---315044432068767898751222689860027867874
Q gi|254780336|r 29 LTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGD---HFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFAD 105 (488)
Q Consensus 29 ~~~~gL~~LQHRGqdsaGIa~~d~~~i~~~K~~GlV~d---vf~~~~~l~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~ 105 (488)
.+|..-..+.++=.+..=|+++.... .++|++.+..+ .|.+.. -..++..++|.|.||||+..++|.-+|||-
T Consensus 147 ~Ly~~Rk~ie~~~~~~fYi~SLSs~T-IVYKGm~~~~qL~~fY~DL~-dp~~~S~~al~H~RFSTNTfPsW~lAQPfR-- 222 (1520)
T 1ofd_A 147 RLYIARSIIGKKLAEDFYVCSFSCRT-IVYKGMVRSIILGEFYLDLK-NPGYTSNFAVYHRRFSTNTMPKWPLAQPMR-- 222 (1520)
T ss_dssp HHHHHHHHHGGGCBTTBEEEEEESSE-EEEEESSCHHHHHHHBHHHH-CTTCCBSEEEEEECCCSSSCCCGGGSSCCS--
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCC-EEECCCCCHHHHHHHCHHCC-CCCEEEEEEEEECCCCCCCCCCCCCCCCCC--
T ss_conf 99999999998754787983267781-68757888789867351018-976589898178776788899854024161--
Q ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHC------------------CCCCCCCCCHHHH---HHHHHHH------------
Q ss_conf 699719999965508789999999864------------------9824234307898---8989873------------
Q gi|254780336|r 106 LQVGGIAIAHNGNFTNGLTLRKKLISS------------------GAIFQSTSDTEVI---LHLIARS------------ 152 (488)
Q Consensus 106 ~~~g~iaiaHNGnI~N~~eLr~~L~~~------------------g~~f~s~sDTEvI---~~Li~~~------------ 152 (488)
. |+|||+|.-..--+..+..+ -......|||.-+ +.+|.+.
T Consensus 223 --~----laHNGEINTirGN~nWm~ARe~~l~s~~~~~~~~~~l~Pii~~g~SDSa~LDn~lE~Lv~~G~sl~~A~~mli 296 (1520)
T 1ofd_A 223 --L----LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILV 296 (1520)
T ss_dssp --S----EEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHS
T ss_pred --C----CEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf --0----3336077767668999999887602775463568636787898998379999999999984999899998748
Q ss_pred ---CCCC--CC--HHHHH-------HHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEEC-CCEEEEEECCHHCCCCCC
Q ss_conf ---0256--70--56899-------998653043999963997999982566541599826-956999861200104787
Q gi|254780336|r 153 ---QKNG--SC--DRFID-------SLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGEL-HGKPIFCSETCALEITGA 217 (488)
Q Consensus 153 ---~~~~--~~--e~i~~-------~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~-~~~~v~ASEs~Al~~ig~ 217 (488)
+.++ .. ..++. .|.-|+|.-++++-+++.+.+.-|++|+||+.|..+ |+.+++|||.-.++. .-
T Consensus 297 Peaw~~~~~m~~~pe~rafYeY~s~~mEPWDGPAaI~ftdG~~iga~LDRNGLRP~Ry~iT~D~~vi~aSE~Gvv~~-~~ 375 (1520)
T 1ofd_A 297 PEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDGKIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDL-PE 375 (1520)
T ss_dssp CCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECSSEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCC-CG
T ss_pred CHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCC-CH
T ss_conf 62102898777448889999998600777777605676328778984035778724689973872787404676578-87
Q ss_pred CEEE---ECCCCEEEEEEECCCC
Q ss_conf 4123---3178707999408984
Q gi|254780336|r 218 KYIR---DVENGETIVCELQEDG 237 (488)
Q Consensus 218 ~~ir---dv~PGEiivi~~~~~g 237 (488)
+.|. -+.||+++.+|..+..
T Consensus 376 ~~V~~kgrL~PG~mi~vD~~~gr 398 (1520)
T 1ofd_A 376 VDIVEKGRLAPGQMIAVDLAEQK 398 (1520)
T ss_dssp GGEEEEEECCTTCEEEEETTTTE
T ss_pred HHEEECCCCCCCCEEEEECCCCE
T ss_conf 88013677699868999854893
No 12
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.72 E-value=4.2e-16 Score=132.99 Aligned_cols=184 Identities=20% Similarity=0.191 Sum_probs=123.6
Q ss_pred EEEEEEEECCEEEEEECCCCHHH---HCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEEEEEC
Q ss_conf 02799997996999804871676---315044432068767898751222689860027867874699719999965508
Q gi|254780336|r 44 ATGIISFNGNKFHSERHLGLVGD---HFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFT 120 (488)
Q Consensus 44 saGIa~~d~~~i~~~K~~GlV~d---vf~~~~~l~~l~G~~~IGHvRYsT~G~~~~~n~QPf~~~~~~g~iaiaHNGnI~ 120 (488)
..=|+.+.... .++|++.+..+ .|.+.. -..++..++|.|.||||+..++|.-+|||- . |+|||+|.
T Consensus 166 ~fYi~SLSsrT-IVYKGml~~~qL~~fY~DL~-d~~f~S~~al~H~RFSTNT~PsW~lAQPfR----~----LaHNGEIN 235 (1479)
T 1ea0_A 166 DFYICSLSARS-IIYKGMFLAEQLTTFYPDLL-DERFESDFAIYHQRYSTNTFPTWPLAQPFR----M----LAHNGEIN 235 (1479)
T ss_dssp SCEEEEEESSE-EECCBSSCGGGHHHHCGGGG-STTCCBSEEEEEECCCSCSCCCSTTSSCCS----S----EEEEECCT
T ss_pred CEEEECCCCCE-EEECCCCCHHHHHHHCHHHC-CCCEEEEEEEEECCCCCCCCCCCCCCCCCC----C----CEECHHHH
T ss_conf 67970377780-68836888789867453208-976588898177776688899864025160----0----33360888
Q ss_pred CHHHHHHHHHHCC-----------------CCCCCCCCHHHH---HHHHHHH---------------CC--CCCCHHHHH
Q ss_conf 7899999998649-----------------824234307898---8989873---------------02--567056899
Q gi|254780336|r 121 NGLTLRKKLISSG-----------------AIFQSTSDTEVI---LHLIARS---------------QK--NGSCDRFID 163 (488)
Q Consensus 121 N~~eLr~~L~~~g-----------------~~f~s~sDTEvI---~~Li~~~---------------~~--~~~~e~i~~ 163 (488)
-..-.+..+..+. ..-...|||..+ +.++.+. +. ....+.++.
T Consensus 236 Ti~GN~nwm~ARe~~l~s~~~g~~~~~l~Pii~~~~SDSa~LDn~lE~Lv~~G~sl~~A~~mliPeaw~~~~~m~~~~ra 315 (1479)
T 1ea0_A 236 TVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKA 315 (1479)
T ss_dssp THHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 77668999998887523831002477548747999981488999999999749987999984087554577778878999
Q ss_pred -------HHHHHHCCEEEEEEECCEEEEEEECCCCCEEEEEECCCE-EEEEECCHHCCCCCCCEEEE---CCCCEEEEEE
Q ss_conf -------998653043999963997999982566541599826956-99986120010478741233---1787079994
Q gi|254780336|r 164 -------SLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGK-PIFCSETCALEITGAKYIRD---VENGETIVCE 232 (488)
Q Consensus 164 -------~l~~l~Gayslv~l~~~~l~~~RDp~GiRPL~~G~~~~~-~v~ASEs~Al~~ig~~~ird---v~PGEiivi~ 232 (488)
.|.-|+|.-++++-+++.+.+.-|++|+||+.|..++|. +++|||.-.++. .-+.|.+ +.||+++.++
T Consensus 316 fYeY~s~~mEPWDGPAai~ftDG~~iga~LDRNGLRP~Ry~iT~D~~vilaSE~Gvv~~-~~~~V~~kgRL~PG~mi~vD 394 (1479)
T 1ea0_A 316 LIQYCNSVMEPWDGPAALAMTDGRWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKI-DETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp HHHHHHHHCCCCCSSEEEEECSSSEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCC-CGGGEEEEEECCTTCEEEEE
T ss_pred HHHHHHHCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCC-CHHHEEECCCCCCCCEEEEE
T ss_conf 99999720567778626666327678995055678750499972883899857984056-71453663665998479998
Q ss_pred ECCCCE
Q ss_conf 089847
Q gi|254780336|r 233 LQEDGF 238 (488)
Q Consensus 233 ~~~~g~ 238 (488)
.....+
T Consensus 395 ~~~G~i 400 (1479)
T 1ea0_A 395 LQSGKL 400 (1479)
T ss_dssp TTTTEE
T ss_pred CCCCCC
T ss_conf 368952
No 13
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.40 E-value=2.8e-13 Score=112.95 Aligned_cols=167 Identities=20% Similarity=0.294 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC---------------------------
Q ss_conf 999999999987---48656772012001204779999998199600100117---------------------------
Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN--------------------------- 325 (488)
Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn--------------------------- 325 (488)
.-|...|++||+ +...+.++|+++|..|++.|...|+++++|+...+++.
T Consensus 4 ~dR~~aG~~LA~~l~~~~~~~~vVl~ip~Ggv~~a~~iA~~l~~~~d~~~~~ki~~p~~~e~~~gavs~~~~~~~~~~~~ 83 (208)
T 1wd5_A 4 RDRRHAGALLAEALAPLGLEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLMPYAL 83 (208)
T ss_dssp SSHHHHHHHHHHHHGGGCCCSCEEEECTTHHHHHHHHHHHHHTCEEEECCEEEEEETTEEEEEEEEEETTCCEEECTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCEEECCCCEEEECHHH
T ss_conf 33999999999999961899879991798764999999998512101466750247887101133075599779710364
Q ss_pred CCCCCEEEECCHHH-----HHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 65321011064467-----7765320134324553389328974035333338889999985399789999658980588
Q gi|254780336|r 326 HYVGRTFIEPSHHI-----RAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 326 ~y~gRtFI~p~~~~-----R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
++.++|++++.... +.+.....-+.....++||+|+||||.|-.|.|++..+++||++||++|++.. |+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gk~ViLVDD~i~TG~Tm~aa~~~L~~~ga~~v~~a~---pv~-- 158 (208)
T 1wd5_A 84 RYADQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAV---PVA-- 158 (208)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEE---EEB--
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEE---EEC--
T ss_conf 305815665788889999998764640258974557878999715133589999999999976999899999---856--
Q ss_pred CCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 65650058978885466999889998709977888339899986114666667567320121378766876455674466
Q gi|254780336|r 401 DFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDE 480 (488)
Q Consensus 401 c~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~~ 480 (488)
.. ...++++.. ||-+.+...+++ +..++|--+|| ++.|++....++
T Consensus 159 ---------------~~-~~~~~l~~~--~D~v~~~~p~~f---------------~~v~~~y~~f~-~v~d~ev~~~L~ 204 (208)
T 1wd5_A 159 ---------------SP-EAVERLKAR--AEVVALSVPQDF---------------AAVGAYYLDFG-EVTDEDVEAILL 204 (208)
T ss_dssp ---------------CH-HHHHHHHTT--SEEEEEECCTTC---------------CCGGGGBSCCC-CCCHHHHHHHHH
T ss_pred ---------------CH-HHHHHCCCC--CCEEEECCCCCH---------------HCCCCCCCCCC-CCCHHHHHHHHH
T ss_conf ---------------87-788751667--998998578301---------------10240157678-799999999999
Q ss_pred H
Q ss_conf 6
Q gi|254780336|r 481 E 481 (488)
Q Consensus 481 ~ 481 (488)
+
T Consensus 205 ~ 205 (208)
T 1wd5_A 205 E 205 (208)
T ss_dssp T
T ss_pred H
T ss_conf 8
No 14
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.37 E-value=2.1e-12 Score=106.61 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHE-ECCCCCCCEEEECCHHHHHHHHHHCC--CCCH
Q ss_conf 99999999998748656772012001204779999998199600100-11765321011064467776532013--4324
Q gi|254780336|r 276 VSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGI-IRNHYVGRTFIEPSHHIRAFGVKLKH--SANR 352 (488)
Q Consensus 276 ~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~l-vkn~y~gRtFI~p~~~~R~~~v~~K~--~~~~ 352 (488)
+..+.+++.||+..+.+.|+|+++|..|++.|...|+++|+||.... .+..+.+++++.+.+..|....+..+ .+..
T Consensus 36 ~l~~~~a~~la~~~~~~~D~vv~i~~~Gi~lA~~lA~~lg~p~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 115 (175)
T 1vch_A 36 EFTRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEALGLPYVVARRRRRPYMEDPIIQEVQTLTLGVGEVLWLDRRFA 115 (175)
T ss_dssp HHHHHHHHHHGGGSCTTCCEEEEESSTHHHHHHHHHHHHTCCEEEEBSSCCTTCCSCEEEECCC------CEEEECHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEECCHH
T ss_conf 99999999999872899999995384470768999999698959997213677898779767865103542056411000
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 5533893289740353333388899999853997899996
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
..++||+|+||||.|..|.|++..+++|+++||+.|-+..
T Consensus 116 ~~~~G~rVllVDDvitTG~Tl~a~~~~l~~aGa~vv~v~~ 155 (175)
T 1vch_A 116 EKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLA 155 (175)
T ss_dssp HHHTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 1128988999984416688899999999986997999999
No 15
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=99.06 E-value=3.5e-10 Score=90.87 Aligned_cols=118 Identities=21% Similarity=0.242 Sum_probs=82.8
Q ss_pred HHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCE
Q ss_conf 99998748-65677201200120477999999819960010011765321011064467776532013432455338932
Q gi|254780336|r 282 GKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360 (488)
Q Consensus 282 G~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~v 360 (488)
-++||++- ..+.|+|+||+..|.+.|...|+.++.+-...+...+|.+.+ +.........+....++||+|
T Consensus 15 i~~La~~i~~~~~d~IvgI~rgG~~~a~~la~~L~~~~~~~~~~~~y~~~~--------~~~~~~~~~~~~~~~~~gk~V 86 (153)
T 1vdm_A 15 IFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGID--------ERGEKPVITIPIHGDLKDKRV 86 (153)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTTHHHHHHHHHHTTSCCEEEEEEECCCC----------CCCSSCEEEECCCSCCBTCEE
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCC--------CCCCCEEEECCCCCCCCCCEE
T ss_conf 999999987559999999888868999999998689752488653444742--------446740242024323589989
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC----CCCCCCCCCCCEECC
Q ss_conf 897403533333888999998539978999965----898058865650058
Q gi|254780336|r 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA----SPMVLYPDFYGIDIP 408 (488)
Q Consensus 361 vlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~----sPpi~~pc~yGid~p 408 (488)
+||||.+-.|+|++.+++.|+++||++|++++- +.. .-|+|||.+..
T Consensus 87 LiVDDv~~TG~Tl~~~~~~l~~~ga~~v~~avL~~k~~~~-~~pDy~~~e~~ 137 (153)
T 1vdm_A 87 VIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTS-VVPDYYVFRTE 137 (153)
T ss_dssp EEEEEEESSCHHHHHHHHHHHTTTBSEEEEEEEEECTTCS-SCCSBBCEECS
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCC-CCCCEEEEECC
T ss_conf 9972531568479999999986599789999999988998-65758999868
No 16
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=98.89 E-value=4.7e-09 Score=82.79 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHH--HHHHHCCCCC
Q ss_conf 999999999998748-6567720120012047799999981996001001176532101106446777--6532013432
Q gi|254780336|r 275 YVSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRA--FGVKLKHSAN 351 (488)
Q Consensus 275 y~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~--~~v~~K~~~~ 351 (488)
.++-.++|+.||+.. +.++|.|++++-+|+|.|...|.++|+|+.-.--++++.+.......+..+. ......+..-
T Consensus 35 P~~~~~i~~~la~~~~~~~~d~Ivg~~~~GiplA~~lA~~L~~p~v~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (197)
T 1y0b_A 35 PLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSG 114 (197)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEEETTTTHHHHHHHHHHHTCCEEEEBSSCCSSCCSSEEEEEEEETTTTEEEEEEEEG
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEH
T ss_conf 99999999999998358999899986621099999999986998799985077789884699989840455411465404
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 45533893289740353333388899999853997899996
Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
....+|+||++|||-|-.|.|++..+++|+++||+-+.+.+
T Consensus 115 ~~l~~g~rVlIVDDvitTG~T~~~~i~ll~~~Ga~vvgv~v 155 (197)
T 1y0b_A 115 THLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGI 155 (197)
T ss_dssp GGCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 54169979999720213283699999999987998999999
No 17
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=98.79 E-value=1.2e-08 Score=80.02 Aligned_cols=111 Identities=19% Similarity=0.153 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH
Q ss_conf 99999999998748-65677201200120477999999819960010011765321011064467776532013432455
Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 (488)
Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~ 354 (488)
++-.+++..||+.. ..++|.|++++-.|++.|...|..+|+|+...--+.+.-+.+|....+.+......+-+. ...+
T Consensus 36 ~~~~~l~~~la~~~~~~~~d~Vvgie~~Gi~lA~~lA~~Lg~p~v~~rk~~~~~~~~~~~~~~~~~~~~~~iei~-~~~l 114 (186)
T 1l1q_A 36 AALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQ-KRQL 114 (186)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEESGGGHHHHHHHHHHHTCEEEEEEETTSSCSSEEEEEEEETTEEEEEEEEE-GGGC
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEE-CCCC
T ss_conf 999999999999706699979998455444778999998199878776137888505999986157766079987-1203
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 338932897403533333888999998539978
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE 387 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e 387 (488)
.+|+||++|||-|..|.|++..+++++++||+-
T Consensus 115 ~~G~rVLIVDDvl~TGgT~~a~~~ll~~~Ga~v 147 (186)
T 1l1q_A 115 GPHDVVLLHDDVLATGGTLLAAIELCETAGVKP 147 (186)
T ss_dssp CTTCCEEEEEEEESSSHHHHHHHHHHHHTTCCG
T ss_pred CCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCCE
T ss_conf 789989999534331648999999999879947
No 18
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=98.60 E-value=1.9e-07 Score=71.37 Aligned_cols=133 Identities=16% Similarity=0.247 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH
Q ss_conf 999999999987---48656772012001204779999998199600100117653210110644677765320134324
Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488)
Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488)
+....++..||+ +...+.|.|+|++-.|+|.|...|..+++|+.- +|....+. + ..+.. .-
T Consensus 43 ~~~~~l~~~la~~i~~~~~~~d~Ivg~~~gGipla~~va~~l~~p~~~--~RK~~k~~------------g-~~~~~-~g 106 (205)
T 2wns_A 43 RLLSQVADILFQTAQNAGISFDTVCGVPYTALPLATVICSTNQIPMLI--RRKETKDY------------G-TKRLV-EG 106 (205)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEECTTTTHHHHHHHHHHHTCCEEE--ECCTTTTS------------S-SCCSE-ES
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEE--EEECCCCC------------C-CCEEE-CC
T ss_conf 999999999999888608888758712022189989888753899346--76203666------------6-31146-68
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE
Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488)
...+|++|++|||.|..|.|++..+++|+++|++-+.+.+- +|-.. ...+.+. ..|..-
T Consensus 107 ~i~~g~~VlIVDDvitTG~T~~~ai~~l~~~G~~v~~v~vi-----------vdr~~---------~~~~~l~-~~gi~~ 165 (205)
T 2wns_A 107 TINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVL-----------LDREQ---------GGKDKLQ-AHGIRL 165 (205)
T ss_dssp CCCTTCBEEEEEEEESSSHHHHHHHHHHHHTTCBCCEEEEE-----------EECCS---------SHHHHHH-TTTCEE
T ss_pred CCCCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCEEEEEEEE-----------EECCC---------CHHHHHH-HCCCCE
T ss_conf 76666459999610212706798999998689889999999-----------97761---------6599999-779949
Q ss_pred EEEECHHHHHHHH
Q ss_conf 8883398999861
Q gi|254780336|r 433 LGFLSVDGLYNAI 445 (488)
Q Consensus 433 l~yls~e~l~~ai 445 (488)
..-++++++.+.+
T Consensus 166 ~sL~~l~dl~~~~ 178 (205)
T 2wns_A 166 HSVCTLSKMLEIL 178 (205)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEECCHHHHHHHH
T ss_conf 9975099999999
No 19
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A*
Probab=98.59 E-value=3.5e-08 Score=76.61 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH
Q ss_conf 99999999999987486567720120012047799999981996001001176532101106446777653201343245
Q gi|254780336|r 274 IYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488)
Q Consensus 274 Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488)
++..=++|..++.++. +.|+++|++..|.+.|.-.++.+++|+...+...+|.+.+- ....+ ....
T Consensus 12 i~~~~~~La~~i~~~~--~~d~ivgI~rGG~~~a~~L~~~l~~~~~~~~~~~~y~~~~~-------~~~~~-----~~~~ 77 (152)
T 1nul_A 12 LQIHARKLASRLMPSE--QWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQ-------RELKV-----LKRA 77 (152)
T ss_dssp HHHHHHHHHHHHCSGG--GCSEEEEEETTTHHHHHHHHHHHTCCCEEEEEEEC---------------CEE-----EECC
T ss_pred HHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCC-------CCEEE-----EEEC
T ss_conf 9999999999998668--99899998886499999999985888279999876165543-------54378-----7410
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCH
Q ss_conf 533893289740353333388899999853997899996589805886565005897
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDP 410 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~ 410 (488)
.++||+|+||||-+-.|+|++.+++.|+++...-+|.+..+.+ .|.||+.++++.
T Consensus 78 ~~~gk~VLiVDDI~DtG~Tl~~i~~~l~~~~~a~l~~K~~~~~--~~d~~~~~~~~d 132 (152)
T 1nul_A 78 EGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRP--LVDDYVVDIPQD 132 (152)
T ss_dssp SSCCTTEEEEEEEECTTSSHHHHHHHCTTSEEEEEEECGGGGG--GCSEEEEECCTT
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCC--CCCCEEEECCCC
T ss_conf 4689726999503154189999998667766999998668985--798188687899
No 20
>2jbh_A HHGP; glycosyltransferase, PRTFDC1, transferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens}
Probab=98.56 E-value=3.7e-07 Score=69.30 Aligned_cols=141 Identities=19% Similarity=0.289 Sum_probs=100.7
Q ss_pred EEEEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC---------CCEEHHEEC-
Q ss_conf 0000100247430003728999999999999874865677201200120477999999819---------960010011-
Q gi|254780336|r 255 CIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESG---------IPFEQGIIR- 324 (488)
Q Consensus 255 C~FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~g---------ip~~~~lvk- 324 (488)
+.++.|.| ....+.+.=.+|+.++.+...-+..++++|...|.+.|--.++++. +|.+-.+++
T Consensus 37 ~~~~~Ili-------~~~~I~~rI~rLA~eI~~~~~~~~~viIgIl~Gg~~fa~dL~~~L~~~~~~~~~~~~~~vdfi~v 109 (225)
T 2jbh_A 37 GDLEYVLI-------PHGIIVDRIERLAKDIMKDIGYSDIMVLCVLKGGYKFXADLVEHLKNISRNSDRFVSMKVDFIRL 109 (225)
T ss_dssp TSEEEEEE-------CHHHHHHHHHHHHHHHHHHHTTSCEEEEEEETTTHHHHHHHHHHHHHHHHHSSCCCCEEEEEEEE
T ss_pred CCCCEEEC-------CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCCEEEEEEEE
T ss_conf 54168923-------99999999999999999982999849999837969624899999876403667654247899997
Q ss_pred CCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE-----CCCCC-C
Q ss_conf 76532101106446777653201343245533893289740353333388899999853997899996-----58980-5
Q gi|254780336|r 325 NHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV-----ASPMV-L 398 (488)
Q Consensus 325 n~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri-----~sPpi-~ 398 (488)
..|.+ +. ....++.-..+....++||+|+||||=+=.|.|++.+++.|.+.||++|.+++ .+-.+ +
T Consensus 110 ssY~~-~~-------~~~~~~i~~~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~L~~~~pksV~~avLl~K~~~r~~~i 181 (225)
T 2jbh_A 110 KSYRN-DQ-------SMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGF 181 (225)
T ss_dssp C------------------CCEESSSCGGGGTTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEECC-CCSCC
T ss_pred ECCCC-CC-------CCCCEEEEECCCHHHHHCCCEEEEECEECHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCC
T ss_conf 13799-76-------34661798058745541050599712112316999999999646999899999998163365898
Q ss_pred CCCCCCEECCCH
Q ss_conf 886565005897
Q gi|254780336|r 399 YPDFYGIDIPDP 410 (488)
Q Consensus 399 ~pc~yGid~p~~ 410 (488)
.|.|+|-++|..
T Consensus 182 ~~Dy~Gfeipd~ 193 (225)
T 2jbh_A 182 RPDYAGFEIPNL 193 (225)
T ss_dssp CCSEEEEEECSS
T ss_pred CCCEEEEECCCC
T ss_conf 987899987995
No 21
>2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A*
Probab=98.56 E-value=9.6e-09 Score=80.62 Aligned_cols=112 Identities=17% Similarity=0.079 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHE----EC-CCCCCCEEEECCHH-----HHHHHHHH
Q ss_conf 999999998748-656772012001204779999998199600100----11-76532101106446-----77765320
Q gi|254780336|r 278 RRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGI----IR-NHYVGRTFIEPSHH-----IRAFGVKL 346 (488)
Q Consensus 278 R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~l----vk-n~y~gRtFI~p~~~-----~R~~~v~~ 346 (488)
-.++.+.||++. ..+.|+|+|||..|.+.|.-.|+.+|+|....+ ++ ..|-+.+- ..... ........
T Consensus 13 i~~~~~~La~~I~~~~pD~IVgI~rGG~i~A~~ls~~L~~~~~~~i~i~~i~~s~y~~~~~-~~~~~~~~~~~~~~~~~~ 91 (213)
T 2jky_A 13 VHQLCQVSAERIKNFKPDLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIILSLYEDLNS-VGSEVEEVGVKVSRTQWI 91 (213)
T ss_dssp HHHHHHTTHHHHHHHCCSEEEECSGGGHHHHHHHHHHHCCTTSCCCEEEECCCCSEECSSC-CCCCC---SCCEECCTTS
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCC-CCCCCCCHHHHCCCCCCC
T ss_conf 9999999999975889999999898889999999998523136765554578898840256-676101111001323111
Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 13432455338932897403533333888999998539978999
Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
+..+....++||+|+||||-+-.|.|++.+++.|+++||++|..
T Consensus 92 ~~~~~~~~l~gk~VLIVDDi~dTG~Tl~~~~~~L~~~g~~~v~~ 135 (213)
T 2jky_A 92 DYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQAKA 135 (213)
T ss_dssp CCCCCCCCCTTCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHEEE
T ss_conf 24676546689879999542030289999999998539454154
No 22
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A*
Probab=98.51 E-value=5.5e-07 Score=68.07 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHHHHHC
Q ss_conf 03728999999999999874865677201200120477999999819960010011-76532101106446777653201
Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLK 347 (488)
Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~v~~K 347 (488)
++-..+...=++|+.++.+...-+..+++||..-|.+.|--.++.+..|++..+++ ..|.+.+ .++ ..+...
T Consensus 14 ls~~~I~~~i~rLA~~I~~~~~~~~~viigIl~Gg~~fa~~L~~~L~~~~~~~~i~~s~y~~~~--~~~-----~~~~~~ 86 (181)
T 2ywu_A 14 ISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAF--KSS-----GEVELL 86 (181)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTTCCCEEEEEETTTHHHHHHHHTTCCSCCEEEEEEEC-------------------CEE
T ss_pred ECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC--CCC-----CCEEEC
T ss_conf 5699999999999999999828998479999577428899998752777555522788607874--678-----836661
Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHHH
Q ss_conf 3432455338932897403533333888999998539978999965-------8980588656500589788854
Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALLA 415 (488)
Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLia 415 (488)
.++...++||+|+||||=+=.|.|++.+++.|++.||++|.+++- ..| ..|.|+|.++|. ++|.
T Consensus 87 -~~~~~~~~gk~VliVDDVlDTG~TL~~~~~~l~~~~p~~i~~avL~dK~~~r~~~-i~~Dy~G~eipd--~~vv 157 (181)
T 2ywu_A 87 -KDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVE-VPIHYLGFEIED--AYVY 157 (181)
T ss_dssp -ECCCSCCTTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSC-CCCSEEEEECCS--CCEE
T ss_pred -CCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCC-CCCCEEEEECCC--CEEE
T ss_conf -5798687898079998887275529999999983699889999999737315489-898789998699--4399
No 23
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=98.50 E-value=4.3e-07 Score=68.88 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=83.3
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEE-EE
Q ss_conf 100247430003728999999999999874---86567720120012047799999981996001001176532101-10
Q gi|254780336|r 259 YVYFARPDSIISGRSIYVSRRNMGKNLAKE---SPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTF-IE 334 (488)
Q Consensus 259 yIYFarpdS~~~g~~Vy~~R~~lG~~La~~---~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtF-I~ 334 (488)
.++|--.-+.+.+ -+.++.+++.|++. ...+.|+|+|++-.|++.|...|.++|+|+...=-+.+--|.+. +.
T Consensus 38 ~~~F~Di~~ll~~---P~~~~~i~~~l~~~~k~~~~~~D~Ivgie~~Gi~~A~~lA~~Lg~p~v~vRK~~K~~g~~~~~e 114 (236)
T 1qb7_A 38 VPRFADVSSITES---PETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSE 114 (236)
T ss_dssp SSSEECTHHHHTC---HHHHHHHHHHHHHHHHHCSSCCSEEEEETTGGGGTHHHHHHHHTCCEEEEBCGGGCCSSEEECC
T ss_pred CCEEEECCHHHCC---HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEE
T ss_conf 9889849047549---9999999999999998548999899966446589899999986347688653156788750468
Q ss_pred CCH----HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 644----677765320134324553389328974035333338889999985399789999
Q gi|254780336|r 335 PSH----HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 335 p~~----~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
... +.+.....+.. ....+|+||++|||=|-.|.|++..+++++++||+-+.+.
T Consensus 115 ~~~~e~g~~~~~~l~~~~---~~i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg~~ 172 (236)
T 1qb7_A 115 PYEKEYKEAAPEVMTIRY---GSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMV 172 (236)
T ss_dssp CCCCCTTSCCCCCCEEET---TSSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEECCCCCCCCCCC---CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 899887136542222237---8535696799996016356699999999998799899999
No 24
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=98.48 E-value=8e-07 Score=66.93 Aligned_cols=133 Identities=21% Similarity=0.240 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH
Q ss_conf 999999999987---48656772012001204779999998199600100117653210110644677765320134324
Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488)
Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488)
+.+..+++.+++ +...+.|+|+|++-.|+|.|...|+.+++|+. +++.+..+. . ...-+.
T Consensus 39 ~~~~~~~~~~~e~~~~~~~~~d~Vvg~~~gGip~a~~~A~~l~~p~~--~iRk~~k~~-----g----------~~~~~~ 101 (178)
T 2yzk_A 39 SSYSVALDLLLEVGGQDLARSSAVIGVATGGLPWAAMLALRLSKPLG--YVRPERKGH-----G----------TLSQVE 101 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEEETTTTHHHHHHHHHHHTCCEE--EECCCCTTS-----C----------CCCCCB
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCEE--EEEEECCCC-----C----------CCCEEE
T ss_conf 99999999999998754465898998737741566777886458720--223103566-----5----------441488
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE
Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488)
..++|++|++|||.+-.|.|++..+++|+++|++-+.+.+- +|-. ....|..+..|..-
T Consensus 102 g~~~g~~VlIVDDvitTG~S~~~~i~~l~~~G~~v~~v~vl-----------vdr~----------~~~~e~~~~~gi~~ 160 (178)
T 2yzk_A 102 GDPPKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVL-----------VDRG----------EGAGELLARMGVRL 160 (178)
T ss_dssp TCCCSSEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEE-----------EECC----------SSHHHHHHTTTCEE
T ss_pred EECCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EECC----------CCHHHHHHHCCCCE
T ss_conf 52489579999744735746899999999889979999999-----------9787----------67689999769989
Q ss_pred EEEECHHHHHHHHC
Q ss_conf 88833989998611
Q gi|254780336|r 433 LGFLSVDGLYNAIC 446 (488)
Q Consensus 433 l~yls~e~l~~ai~ 446 (488)
..-++++++.+.++
T Consensus 161 ~Sl~~~~~l~~~l~ 174 (178)
T 2yzk_A 161 VSVATLKTILEKLG 174 (178)
T ss_dssp EEEEEHHHHHHHTT
T ss_pred EEEEEHHHHHHHHH
T ss_conf 99738999999998
No 25
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis MB4} SCOP: c.61.1.1 PDB: 1r3u_A*
Probab=98.46 E-value=9.7e-07 Score=66.33 Aligned_cols=135 Identities=15% Similarity=0.277 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHHHHHCC
Q ss_conf 3728999999999999874865677201200120477999999819960010011-765321011064467776532013
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLKH 348 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~v~~K~ 348 (488)
.-..+...=.+|..++.+...-+..+++||...|.+.|--.+++++.|....++. ..|.+ .......+...
T Consensus 38 s~~~I~~~I~rLA~qI~~~~~~~~~vlvgIl~GG~~fa~~L~~~L~~~~~i~~i~~~~y~~-------~~~~~g~~~~~- 109 (205)
T 1yfz_A 38 TEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGS-------STKSSGIVKII- 109 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCEEEEEETTTHHHHHHHHHHTCCSCCEEEEEEEEECSH-------HHHHHCCEEEE-
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEECC-------CCCCCCCEEEE-
T ss_conf 9999999999999999997499964999992595207876654132343453699985068-------75568855781-
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHHH
Q ss_conf 432455338932897403533333888999998539978999965-------8980588656500589788854
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALLA 415 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLia 415 (488)
.+....++||+|+||||=+=.|.|++.+++.|++.||++|.+++- ..||. |.|+|.++|+ ++|.
T Consensus 110 ~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~l~~~~p~~i~~avL~dK~~~~~~~i~-~Dy~Gfei~d--~fvv 180 (205)
T 1yfz_A 110 KDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVK-VDYCGFKIPD--KFVV 180 (205)
T ss_dssp ECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCCSCCC-CSEEEEECCS--SCCB
T ss_pred CCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC-CCEEEEEECC--CCEE
T ss_conf 576647789979999332235699999999998639980779999980666758999-8889999199--3779
No 26
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=98.42 E-value=5.8e-07 Score=67.91 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCH-HHHHHHHHHCCCCCH
Q ss_conf 999999999998748-656772012001204779999998199600100117653210110644-677765320134324
Q gi|254780336|r 275 YVSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSH-HIRAFGVKLKHSANR 352 (488)
Q Consensus 275 y~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~-~~R~~~v~~K~~~~~ 352 (488)
..+-..|+..|++.. +.+.|.|+++.-.|++.|...|.++|+|+...= |..+........+. ..+. .-.+.. .-.
T Consensus 41 ~~i~~~la~~l~e~~~~~~~D~Vvg~e~~Gi~la~~lA~~L~~p~v~~R-K~~kl~~~~~~~~~~~~~~-~~~l~~-~~~ 117 (187)
T 1g2q_A 41 QKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGFVPVR-KAGKLPGECFKATYEKEYG-SDLFEI-QKN 117 (187)
T ss_dssp HHHHHHHHHHHHHHCTTSCCCEEEEETTTHHHHHHHHHHHHTCEEEEEE-ETTCSCSSEEEEEEECSSC-EEEEEE-ETT
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEE-ECCCCCCCCEEEEEEECCC-CEEEEE-EEC
T ss_conf 9999999999998617679879998345753558999998699848997-3687886404798751565-417888-614
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 55338932897403533333888999998539978999965
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
...+|+||++|||=|-.|.|++..+++++++||+-+.+.+-
T Consensus 118 ~i~~G~rVlIVDDvi~TGgT~~a~~~ll~~~Ga~Vv~~~vl 158 (187)
T 1g2q_A 118 AIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFV 158 (187)
T ss_dssp SSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 44678679998300403769999999999879989999999
No 27
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxantine-guanine phosphoribosyltransferase, 2-(N- morpholino)ethanesulfonic acid (MES); HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Probab=98.40 E-value=9.8e-07 Score=66.31 Aligned_cols=139 Identities=17% Similarity=0.274 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCC
Q ss_conf 03728999999999999874865677201200120477999999819960010011765321011064467776532013
Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKH 348 (488)
Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~ 348 (488)
+.-..+...=.+|+.++.+...-+..++++|-..|.+.|--..+++..|....++.-......+ .....++..
T Consensus 35 is~e~I~~~I~rLA~qI~e~~~~~~~viI~Il~Gg~~fa~~L~~~l~~~~~~~~~~~s~y~~~~------~s~~~v~~~- 107 (204)
T 3hvu_A 35 ISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHST------VSTGEVKIL- 107 (204)
T ss_dssp ECHHHHHHHHHHHHHHHHHHTSSSCCEEEEETTTTHHHHHHHHHTCCSCCEEEEEEEEECSGGG------TTSCCEEEE-
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEECCCC------CCCCCEEEE-
T ss_conf 4899999999999999999749997199999157589999999731887567548999966987------626846881-
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHH-HCC
Q ss_conf 432455338932897403533333888999998539978999965-------898058865650058978885-466
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALL-ANK 417 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLi-a~~ 417 (488)
..+...++||+|+||||=+=.|.|++.+++.|.+.||++|.++.- ..|+. |.|+|.++|. +.| .+.
T Consensus 108 ~~~~~~i~gk~VLlVDDIlDTG~Tl~~~~~~l~~~~p~sv~~avLl~K~~~r~~pi~-pDy~G~ei~d--~~vVGyG 181 (204)
T 3hvu_A 108 KDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLK-ADYVGFTVPH--EFVVGYG 181 (204)
T ss_dssp ECCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECGGGCSSCCC-CSEEEEECCS--CCEEBTT
T ss_pred CCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC-CCEEEEECCC--CEEEECC
T ss_conf 478857699989997024307499999999999649981689999995854648989-9889999299--3699888
No 28
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=98.39 E-value=1.6e-06 Score=64.80 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHC
Q ss_conf 037289999999999998748-6567720120012047799999981996001001176532101106446777653201
Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLK 347 (488)
Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K 347 (488)
++-..+...=.+|..++.+.. ..+..+++||...|.+.|.-.++++++|+.-.+++-.+. ... ......+...
T Consensus 9 is~~~I~~~i~rLA~qI~e~~~~~~~~vlvgI~~GG~~~a~~L~~~l~~~~~i~~~~~~~y---~~~---~~~~~~~~~~ 82 (177)
T 3ohp_A 9 ISEQEVAQRIRELGQQITEHYQGSSDLVLVGLLRGSFVFMADLARQIHLTHQVDFMTASSY---GNS---MQSSRDVRIL 82 (177)
T ss_dssp ECHHHHHHHHHHHHHHHHHHTTTCSCEEEEEETTTTHHHHHHHHHTCCSCCEEEEEEECC--------------CCCCEE
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEEE---CCC---CCCCCCCEEE
T ss_conf 2899999999999999999738999779999816836899999985189702554898885---133---4678861584
Q ss_pred CCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-----CC-CCCCCCCEECCCH
Q ss_conf 343245533893289740353333388899999853997899996589-----80-5886565005897
Q gi|254780336|r 348 HSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP-----MV-LYPDFYGIDIPDP 410 (488)
Q Consensus 348 ~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP-----pi-~~pc~yGid~p~~ 410 (488)
. .....++||+|+||||=+=.|.|++.+++.|++.||++|.+++--= ++ ..|.|+|.++|+.
T Consensus 83 ~-~~~~~~~gk~VLiVDDI~dTG~Tl~~~~~~l~~~~p~~v~~avL~dK~~~~~~~i~pDy~G~ei~d~ 150 (177)
T 3ohp_A 83 K-DLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICTLLDKPTRREVDVEVNWVGFEIPDE 150 (177)
T ss_dssp E-CCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSCCCCSEEEEECCSC
T ss_pred C-CCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf 4-8875668997999940774579999999999858998899999998275563899998899988996
No 29
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis}
Probab=98.35 E-value=1.2e-06 Score=65.58 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECC-CCCCCEEEECCHHHHHHHHHHCC
Q ss_conf 37289999999999998748656772012001204779999998199600100117-65321011064467776532013
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN-HYVGRTFIEPSHHIRAFGVKLKH 348 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn-~y~gRtFI~p~~~~R~~~v~~K~ 348 (488)
....+.+.=.+|+.++.+...-+..+++||-..|.+.|--.++.++.|....++.- .|.+-+ . .+ ..+...
T Consensus 14 s~e~I~~~i~~lA~~I~~~~~~~~~viIgIl~GG~~fa~~L~~~L~~~~~~~~~~~s~y~~~~--~----~~-~~~~~~- 85 (186)
T 3o7m_A 14 SEEQLQEKVKELALQIERDFEGEEIVVIAVLKGSFVFAADLIRHIKNDVTIDFISASSYGNQT--E----TT-GKVKLL- 85 (186)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCEEEEEETTTTHHHHHHHHTTCCSCEEEEEEEEEECC--------------CEEEE-
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCC--E----EC-CCEEEC-
T ss_conf 899999999999999998759997699999679789999998723788305789999738985--7----75-823162-
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHHH-CCC
Q ss_conf 432455338932897403533333888999998539978999965-------8980588656500589788854-669
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALLA-NKC 418 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLia-~~~ 418 (488)
.++...++||+|+||||=+=.|.|++.+++.|++.||++|.++.- ..| ..|.|+|.++|. +.+. +.+
T Consensus 86 ~~~~~~i~gk~VLlVDDVlDTG~TL~~~~~~l~~~~~~~v~~avL~~k~~~r~~~-i~~Dy~G~ei~d--~~vvGyGl 160 (186)
T 3o7m_A 86 KDIDVNITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLDKPERRKVD-LTAEYVGFQIPD--EFIVGYGI 160 (186)
T ss_dssp ECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSC-CCCSEEEEECCC--SSEEBTTB
T ss_pred CCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCC-CCCCEEEEECCC--CEEEECCC
T ss_conf 5887575898899994255114789999999874499918999999946557589-999989998599--22898987
No 30
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12}
Probab=98.32 E-value=1.2e-06 Score=65.73 Aligned_cols=116 Identities=18% Similarity=0.088 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH
Q ss_conf 99999999998748-65677201200120477999999819960010011765321011064467776532013432455
Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 (488)
Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~ 354 (488)
+....+++.||+.. +.+.|.|++++-+|++-|...|.++|+|+.-.--+.+..++.+...... ....-++.+ .....
T Consensus 46 ~~~~~v~~~la~~~~~~~~D~Iv~~e~~Gi~la~~lA~~l~~p~v~~RK~~k~~~~~~~~~~~~-~~~~~~~~i-~~~~l 123 (190)
T 2dy0_A 46 KAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL-EYGTDQLEI-HVDAI 123 (190)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEETTHHHHHHHHHHHHHTCEEEEEBSTTCCCSCEEEEEEEE-TTEEEEEEE-EGGGC
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEE-ECCEEEEEE-ECCCC
T ss_conf 9999999999998406899999973534312068999975998698755798888606899988-603788898-63667
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 338932897403533333888999998539978999965
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
-+|+||++|||=|-.|.|+...+++|+++||+=+.+.+-
T Consensus 124 ~~G~rVlIVDDvlaTGgT~~a~~~ll~~~Ga~Vvg~~vi 162 (190)
T 2dy0_A 124 KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFI 162 (190)
T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 899879998244131748999999999869989999999
No 31
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1
Probab=98.31 E-value=8.8e-07 Score=66.61 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCC
Q ss_conf 37289999999999998748656772012001204779999998199600100117653210110644677765320134
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHS 349 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~ 349 (488)
+-..+...=.+|+.++.+...-+..+++||..-|.+.|--.++.++.|....++.-.+.+.+. ....++.. .
T Consensus 16 s~~~I~~~i~~LA~~I~e~~~~~~~vligIl~Gg~~fa~~L~~~L~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~ 87 (183)
T 1hgx_A 16 NQDDIQKRIRELAAELTEFYEDKNPVMICVLTGAVFFYTDLLKHLDFQLEPDYIICSSYSGTK-------STGNLTIS-K 87 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTTTHHHHHHHHTTCCSCCEEEEEEEEC----------------CEEE-E
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCC-------CCCCCEEE-C
T ss_conf 999999999999999999738998389996477099999998626887422567877558854-------38851031-2
Q ss_pred CCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--------CCCCCCCCCCEECCCHHHHH
Q ss_conf 324553389328974035333338889999985399789999658--------98058865650058978885
Q gi|254780336|r 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS--------PMVLYPDFYGIDIPDPTALL 414 (488)
Q Consensus 350 ~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s--------Ppi~~pc~yGid~p~~~eLi 414 (488)
.....++||+|+||||=+=.|+|++.++..|++.||++|.+++-- .| +.|.|.|.++|. +.+
T Consensus 88 ~~~~~~~gk~VLlVDDI~dtG~Tl~~~~~~l~~~~p~si~~avL~dK~~~rr~~~-i~~Dy~Gf~i~d--~~v 157 (183)
T 1hgx_A 88 DLKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKVCTLCDKDIGKKAYD-VPIDYCGFVVEN--RYI 157 (183)
T ss_dssp CCSSCCTTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEECCSSCSSC-CCCSEEEEEECS--SCE
T ss_pred CCCCHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC-CCCCEEEEEECC--EEE
T ss_conf 6640003533213542365655699999999738997899999997075554689-998479998199--059
No 32
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}
Probab=98.29 E-value=4e-06 Score=61.92 Aligned_cols=135 Identities=15% Similarity=0.240 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCC
Q ss_conf 37289999999999998748656772012001204779999998199600100117653210110644677765320134
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHS 349 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~ 349 (488)
+-..+...=.+|..++.+...-+..+++||-.-|.+.|--.++.++.|....+++-. +-. ....+...+. ...
T Consensus 18 s~~~I~~~i~rLA~~I~~~~~~~~~viigil~GG~~fa~~L~~~l~~~~~i~~~~~~-----~y~-~~~~~~~~~~-~~~ 90 (185)
T 2geb_A 18 TEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVS-----SYG-SSTKSSGIVK-IIK 90 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCEEEEEETTTTHHHHHHHHHTCCSCCEEEEEEEE-----ECS-TTHHHHCCEE-EEE
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHEEEEEEEEEEEEE-----EEC-CCCCCCCCEE-EEC
T ss_conf 999999999999999999749997399999578547999986432331356788764-----206-8704678558-815
Q ss_pred CCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHHH
Q ss_conf 32455338932897403533333888999998539978999965-------898058865650058978885
Q gi|254780336|r 350 ANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTALL 414 (488)
Q Consensus 350 ~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eLi 414 (488)
+....++||+|+||||=+=.|.|++.+++.|.+.||++|.++.- ..|+ .|.|+|.++|+ +++
T Consensus 91 ~~~~~i~gk~VLlVDDVldTG~TL~~~~~~l~~~~~~si~~~vL~~k~~~r~~~i-~~Dy~G~~v~d--~~v 159 (185)
T 2geb_A 91 DHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADV-KVDYCGFKIPD--KFV 159 (185)
T ss_dssp CCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCCSCC-CCSEEEEECCS--CCE
T ss_pred CCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCC-CCCEEEEEECC--CCE
T ss_conf 6752789998999950544379999999999863998589978998045564899-98889999099--258
No 33
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Probab=98.25 E-value=4.9e-06 Score=61.31 Aligned_cols=140 Identities=13% Similarity=0.180 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHHHHHC---CCCEEHHEEC-CCCCCCEEEECCH
Q ss_conf 00372899999999999987486------567720120012047799999981---9960010011-7653210110644
Q gi|254780336|r 268 IISGRSIYVSRRNMGKNLAKESP------VIADIVVPIPDGGVPAAIGYAKES---GIPFEQGIIR-NHYVGRTFIEPSH 337 (488)
Q Consensus 268 ~~~g~~Vy~~R~~lG~~La~~~~------~~~DiV~~VPdsg~~aA~gya~~~---gip~~~~lvk-n~y~gRtFI~p~~ 337 (488)
.+.-..+...=.+|+.++.++.. -+.-++++|...|.+.|--.++++ ..|....+++ .+|-+.+-
T Consensus 27 L~t~e~I~~~i~~lA~qI~~~y~d~~~~~~~plvlV~Vl~Gg~~Fa~dL~r~L~~~~~~~~i~~i~~~sy~~~~~----- 101 (211)
T 1pzm_A 27 LVTQEQVWAATAKCAKKIAADYKDFHLTADNPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGSGVE----- 101 (211)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHGGGTCBTTBCEEEEEETTTTHHHHHHHHHHHHHTTCCEEEEEEBCC------------
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC-----
T ss_conf 737999999999999999998754113689977999982675999999999850467763677888753125765-----
Q ss_pred HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-------CCCCCCCCCCEECCCH
Q ss_conf 677765320134324553389328974035333338889999985399789999658-------9805886565005897
Q gi|254780336|r 338 HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS-------PMVLYPDFYGIDIPDP 410 (488)
Q Consensus 338 ~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s-------Ppi~~pc~yGid~p~~ 410 (488)
....+. ........++||+|+||||=+=.|.|++.+++.|++.||++|.++.-- .| ..|.|.|.++|.+
T Consensus 102 --~~~~~~-~~~~~~~~l~gk~VlIVDDIlDTG~TL~~~~~~l~~~g~~sv~~avLl~K~~~r~~~-i~~DyvGf~ipd~ 177 (211)
T 1pzm_A 102 --TSGQVR-MLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVD-VLVDYPVITIPRA 177 (211)
T ss_dssp ---------CCBCCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECGGGCSSC-CCCSEEEEECCSC
T ss_pred --CCCEEE-ECCCCCHHHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCC-CCCCEEEEECCCC
T ss_conf --587157-615760333202158973113366169999999983699979999999857436489-8988899982994
Q ss_pred HHHHHCC
Q ss_conf 8885466
Q gi|254780336|r 411 TALLANK 417 (488)
Q Consensus 411 ~eLia~~ 417 (488)
=++.+.
T Consensus 178 -fvvGYG 183 (211)
T 1pzm_A 178 -FVIGYG 183 (211)
T ss_dssp -CEEBTT
T ss_pred -EEEECC
T ss_conf -499898
No 34
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; flexibility, trans CIS peptide bond isomerization, nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1 PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A* 2vfa_A*
Probab=98.21 E-value=7e-06 Score=60.22 Aligned_cols=139 Identities=22% Similarity=0.325 Sum_probs=97.8
Q ss_pred EEHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC---------CCCEEHHEECC-C
Q ss_conf 0010024743000372899999999999987486567720120012047799999981---------99600100117-6
Q gi|254780336|r 257 FEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKES---------GIPFEQGIIRN-H 326 (488)
Q Consensus 257 FEyIYFarpdS~~~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~---------gip~~~~lvkn-~ 326 (488)
+|-|+|+ ...+.+.=.+|++++.+...-+.-+++||-+-|.+.|--..+.+ ++|++..+++- .
T Consensus 31 ~~~Ilis-------~~~I~~~I~~lA~eI~~~y~~k~~vlVgIL~Gg~~Fa~dL~~~L~~~~~~~~~~~~~~~df~~~ss 103 (217)
T 1z7g_A 31 LERVFIP-------HGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKS 103 (217)
T ss_dssp EEEEEEC-------HHHHHHHHHHHHHHHHHHHTTSCEEEEEECSSCCHHHHHHHHHHHHHHTTCSSCCCEEEEEECBC-
T ss_pred HCEEECC-------HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEC
T ss_conf 0589328-------999999999999999998299975999992785999999999998751577654244888999633
Q ss_pred CCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-----CC-CCCCC
Q ss_conf 5321011064467776532013432455338932897403533333888999998539978999965-----89-80588
Q gi|254780336|r 327 YVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-----SP-MVLYP 400 (488)
Q Consensus 327 y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-----sP-pi~~p 400 (488)
|.|.+-. ..+......+...++||.|+||||=+=.|.|++.++..|.+.||++|-++.- .- .-+.|
T Consensus 104 y~~~~~~--------~~~~~~~~~~~~~l~gk~VLiVDDIlDTG~TL~~~~~~l~~~~p~sv~~~~Ll~K~~~r~~~i~~ 175 (217)
T 1z7g_A 104 YCNDQST--------GDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKP 175 (217)
T ss_dssp -----------------CCBCCSSCGGGGTTSEEEEEEEECCCHHHHHHHHHHHHTTCCSEEEEEEEEEECC-----CCC
T ss_pred CCCCCCC--------CCEEEECCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 6886444--------63034325870416536689960420062899999999847698969999999846204589998
Q ss_pred CCCCEECCCH
Q ss_conf 6565005897
Q gi|254780336|r 401 DFYGIDIPDP 410 (488)
Q Consensus 401 c~yGid~p~~ 410 (488)
.|+|-++|.+
T Consensus 176 DyvGfei~d~ 185 (217)
T 1z7g_A 176 DFVGFEIPDK 185 (217)
T ss_dssp SEEEEEECSC
T ss_pred CEEEEECCCC
T ss_conf 6899982992
No 35
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=98.21 E-value=3.5e-06 Score=62.40 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=76.6
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCC
Q ss_conf 99999987486567720120012047799999981996001001176532101106446777653201343245533893
Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359 (488)
Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~ 359 (488)
.+-..+.+....++|.|+++.-+|++.|...|.++|+|+.-.=-+++.-+.++-....... ..-.+. ......-+|+|
T Consensus 45 ~l~~~~~~~~~~~~D~Ivgie~~Gi~la~~lA~~l~~p~v~~RK~~k~~~~~~~~~~~~~~-~~~~~~-~~~~~i~~g~r 122 (180)
T 1zn8_A 45 LLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEY-GKAELE-IQKDALEPGQR 122 (180)
T ss_dssp HHHHHHHHHHTTCCCEEEEETTTHHHHHHHHHHHHTCEEEEEEETTCCCSSEEEEEEEETT-EEEEEE-EETTSSCTTCE
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEE-CCCCEE-EECCCCCCCCE
T ss_conf 9999998745678889998256643601688997299828999668788861799998664-564068-85055458988
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 289740353333388899999853997899996
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
|++|||=|-.|.|+...+++++++||+=+.+.+
T Consensus 123 VlIVDDvlaTGgT~~a~~~ll~~~Ga~vvg~~~ 155 (180)
T 1zn8_A 123 VVVVDDLLATGGTMNAACELLGRLQAEVLECVS 155 (180)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEHHHHHCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999954634081899999999987998999999
No 36
>2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129}
Probab=98.15 E-value=9.6e-06 Score=59.25 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH
Q ss_conf 99999999998748-65677201200120477999999819960010011765321011064467776532013432455
Q gi|254780336|r 276 VSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI 354 (488)
Q Consensus 276 ~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~ 354 (488)
+....+++.+++.. ..+.|.|+|++-.|.+.|.+++.+++.++...+++....+.. .. +. .....
T Consensus 46 ~~~~~l~~~l~~~~~~~~~~~i~gi~~~g~~~a~~~~~a~~~~l~~~~~rke~k~~g--------~~-----~~-~~g~~ 111 (180)
T 2p1z_A 46 RASRLIGELLRELTADWDYVAVGGLTLGADPVATSVMHADGREIHAFVVRKEAKKHG--------MQ-----RR-IEGPD 111 (180)
T ss_dssp HHHHHHHHHHHHTTTTSCCSEEEEETTTHHHHHHHHHHSSSSCCEEEEECSCCC-CC---------C-----CS-EESSC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCC--------CC-----EE-EEEEE
T ss_conf 999999999998763468628974131126888899998477786279987515676--------30-----35-77540
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 33893289740353333388899999853997899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
.+|+||++|||-|-.|.|+...+++|+++||+-+.+.+
T Consensus 112 ~~g~rVlIVDDviTTG~S~~~~i~~l~~~G~~V~~v~v 149 (180)
T 2p1z_A 112 VVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVAT 149 (180)
T ss_dssp CTTCEEEEEEEECSSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 58976899975230375199999999988997999999
No 37
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Probab=98.12 E-value=1.5e-05 Score=57.93 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHHHHHC----C---CCCCCCCCCCCCHHHHHHHHHHHC---CCCEEHHEECCCCCCCEEEECCHHH
Q ss_conf 37289999999999998748----6---567720120012047799999981---9960010011765321011064467
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKES----P---VIADIVVPIPDGGVPAAIGYAKES---GIPFEQGIIRNHYVGRTFIEPSHHI 339 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~----~---~~~DiV~~VPdsg~~aA~gya~~~---gip~~~~lvkn~y~gRtFI~p~~~~ 339 (488)
.-..+...=.+|+.++.+.. + .+..+++||..-|.+.|--.++.+ ..|....++.-. +..-. + .
T Consensus 13 s~~eI~~~I~~LA~eI~e~y~~~~~~~~~~~lvlVgIl~Gg~~fa~~L~r~L~~~~~~~~i~~~~~s---~y~~~-~--~ 86 (220)
T 1tc1_A 13 TEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEFICVS---SYGEG-L--T 86 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCBTTTBCEEEEEETTTTHHHHHHHHHHHHHTTCCEEEEEEEEE---CC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEE---CCCCC-C--C
T ss_conf 9999999999999999998347755567788799998777599999999974312788146678763---02321-2--4
Q ss_pred HHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--C---CC-CCCCCCCEECCCHHHH
Q ss_conf 7765320134324553389328974035333338889999985399789999658--9---80-5886565005897888
Q gi|254780336|r 340 RAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS--P---MV-LYPDFYGIDIPDPTAL 413 (488)
Q Consensus 340 R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s--P---pi-~~pc~yGid~p~~~eL 413 (488)
....+. ....+...++||+|+||||=+=.|.|++.+++.|++.||++|.++.-- | .+ ..|.|+|.++|.+ =+
T Consensus 87 ~~~~v~-~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~L~~~~p~sv~~avLl~K~~~r~~pi~~Dy~Gf~ipd~-fv 164 (220)
T 1tc1_A 87 SSGQVR-MLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNA-FV 164 (220)
T ss_dssp ----CE-EEECCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEECTTCCSSCCCCSEEEEECCSC-EE
T ss_pred CCCCEE-ECCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCE-EE
T ss_conf 676234-5046873425876799830420749999999999830999689999997276575898988899984990-79
Q ss_pred HHCC
Q ss_conf 5466
Q gi|254780336|r 414 LANK 417 (488)
Q Consensus 414 ia~~ 417 (488)
+.+.
T Consensus 165 VGyG 168 (220)
T 1tc1_A 165 IGYG 168 (220)
T ss_dssp EBTT
T ss_pred EECC
T ss_conf 9877
No 38
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI, protein structure initiative, TB structural genomics consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP: c.61.1.1
Probab=98.11 E-value=2.5e-05 Score=56.23 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCC--------CCCCCCCCCCCHHHHHHHHHHHC----CCCEEHHEECCCCCCCEEEECCH
Q ss_conf 3728999999999999874865--------67720120012047799999981----99600100117653210110644
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPV--------IADIVVPIPDGGVPAAIGYAKES----GIPFEQGIIRNHYVGRTFIEPSH 337 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~--------~~DiV~~VPdsg~~aA~gya~~~----gip~~~~lvkn~y~gRtFI~p~~ 337 (488)
+...+...=.+|+.+..|.... +.-+++||...|.+.|.-.++.+ ++|...+.+.-......+
T Consensus 18 s~~dI~~~I~rlA~qI~E~~~~~~~~~~~~~~lvlVGIl~GG~~fa~~L~~~L~~~~~~~v~~~~i~~~~y~~~~----- 92 (201)
T 1w30_A 18 SAANVGRTISRIAHQIIEKTALDDPVGPDAPRVVLLGIPTRGVTLANRLAGNITEYSGIHVGHGALDITLYRDDL----- 92 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTSCCBTTBCCEEEEECTTHHHHHHHHHHHHHHHHHSCCCEEEECCCGGGCC-------
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCC-----
T ss_conf 999999999999999987435544333688877999977671999999999998741753157888778860564-----
Q ss_pred HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHH-HHHCCCCEEEEEEC------CCCCCCCCCCCEECCCH
Q ss_conf 677765320134324553389328974035333338889999-98539978999965------89805886565005897
Q gi|254780336|r 338 HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQM-IRSAGASEVHLRVA------SPMVLYPDFYGIDIPDP 410 (488)
Q Consensus 338 ~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~-lr~aGa~evh~ri~------sPpi~~pc~yGid~p~~ 410 (488)
.........+.......++||.|+||||=+=.|.|++.+++. |...+|+.|.+++= --| +.|.|.|.++||.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~ll~~~~p~~V~~avLvdr~~r~~p-I~~DyvG~~ipt~ 171 (201)
T 1w30_A 93 MIKPPRPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQLAVLVDRGHRELP-LRADYVGKNVPTS 171 (201)
T ss_dssp ------CCCCCBCCTTCSTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECCCCSSS-BCCSEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC-CCCCEEEEECCCC
T ss_conf 446655543345567465797899994022567689999999985289868999999927987489-7898798981599
Q ss_pred H-HHHHCC
Q ss_conf 8-885466
Q gi|254780336|r 411 T-ALLANK 417 (488)
Q Consensus 411 ~-eLia~~ 417 (488)
. |-|.-.
T Consensus 172 ~~e~v~v~ 179 (201)
T 1w30_A 172 RSESVHVR 179 (201)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
T ss_conf 99869999
No 39
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii RH} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A
Probab=98.11 E-value=7.8e-06 Score=59.87 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC------------CEEHHEECCCCCCCEEEECCHHHH
Q ss_conf 89999999999998748656772012001204779999998199------------600100117653210110644677
Q gi|254780336|r 273 SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGI------------PFEQGIIRNHYVGRTFIEPSHHIR 340 (488)
Q Consensus 273 ~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gi------------p~~~~lvkn~y~gRtFI~p~~~~R 340 (488)
.+.+.=.+|+.++.+...-+.-++++|...|.+.|.-.++.+.. |....+++-.+.+.+ +
T Consensus 54 ~I~~rI~rLA~eI~e~y~~~~lvlIgIl~Gg~~Fa~~L~r~L~~~~~~~~~~~~i~~~~~~~~~~s~~~~~--------~ 125 (233)
T 1fsg_A 54 LVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNLLIDYLATIQKYSGRESSVPPFFEHYVRLKSYQND--------N 125 (233)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEEEETTTHHHHHHHHHHHHHHHHHCSSCCSSCSCEEEEEEEEEEETT--------E
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCC--------C
T ss_conf 99999999999999983999719999927879999999999987632355444678368999985026886--------6
Q ss_pred HHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-------CCCCCCCCCCCEECCCHHHH
Q ss_conf 76532013432455338932897403533333888999998539978999965-------89805886565005897888
Q gi|254780336|r 341 AFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA-------SPMVLYPDFYGIDIPDPTAL 413 (488)
Q Consensus 341 ~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~-------sPpi~~pc~yGid~p~~~eL 413 (488)
..............++||.|+||||=+=.|.|++.+++.|.+.||++|.+++- .-|+ .|.|+|.++| +++
T Consensus 126 ~~~~~~~~~~~~~~i~gk~VLIVDDIlDTG~TL~~~~~~L~~~~p~sv~~avLldK~~~r~~pi-~~Dy~Gfeip--d~f 202 (233)
T 1fsg_A 126 STGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSL-KGDFVGFSIE--DVW 202 (233)
T ss_dssp EEEEEEEECSCGGGGTTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEECCTTCCSC-BCSEEEEEEC--SCC
T ss_pred CCCCEEECCCCHHHHCCCEEEEECCEECHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCC-CCCEEEEECC--CCE
T ss_conf 6785102368767755873799523332879999999999730888158999998073354898-9888989889--973
Q ss_pred HH
Q ss_conf 54
Q gi|254780336|r 414 LA 415 (488)
Q Consensus 414 ia 415 (488)
|-
T Consensus 203 VV 204 (233)
T 1fsg_A 203 IV 204 (233)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 40
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding protein, pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Probab=98.09 E-value=1.2e-05 Score=58.49 Aligned_cols=143 Identities=18% Similarity=0.257 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHC----CCCEEHHEECCCCCCCEEEECCHHHHHHH
Q ss_conf 0372899999999999987486-567720120012047799999981----99600100117653210110644677765
Q gi|254780336|r 269 ISGRSIYVSRRNMGKNLAKESP-VIADIVVPIPDGGVPAAIGYAKES----GIPFEQGIIRNHYVGRTFIEPSHHIRAFG 343 (488)
Q Consensus 269 ~~g~~Vy~~R~~lG~~La~~~~-~~~DiV~~VPdsg~~aA~gya~~~----gip~~~~lvkn~y~gRtFI~p~~~~R~~~ 343 (488)
++...+...=.+|+.++.+... .+..+++||...|.+.|--..+.+ +.|+..+.+.-.+..-+.=. +......
T Consensus 8 ~~~~~I~~~i~~lA~qI~e~~~~~~~~vligil~Gg~~fa~~L~~~l~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~ 85 (181)
T 1a3c_A 8 LDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSK--KTSNDEP 85 (181)
T ss_dssp ECHHHHHHHHHHHHHHHHHHCC----CEEEEESHHHHHHHHHHHHHHHHHHSSCCEEEEEEEECCC----------CCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCC--CCCCCCC
T ss_conf 38999999999999999986689998899987353997288999864221288741101344677425654--5567634
Q ss_pred HHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEEC------CCCCCCCCCCCEECCCH-HHHHH
Q ss_conf 32013432455338932897403533333888999998539-978999965------89805886565005897-88854
Q gi|254780336|r 344 VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVA------SPMVLYPDFYGIDIPDP-TALLA 415 (488)
Q Consensus 344 v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~------sPpi~~pc~yGid~p~~-~eLia 415 (488)
+ .+...+...++||.|+||||=+=.|.|++.+++.|++.| |+.|..+.= ..| ..|.|.|.++||. .|.+.
T Consensus 86 ~-~~~~d~~~~l~gk~VliVDDIlDTG~TL~~~~~~l~~~~~~~~v~~avL~dk~~r~~~-i~~DyvGf~ipt~~~e~V~ 163 (181)
T 1a3c_A 86 L-VKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELP-IRADYIGKNIPTSKSEKVM 163 (181)
T ss_dssp E-EEEEECSSCCTTSEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECCCCSSS-CCCSEEEEECCCCSSCEEE
T ss_pred E-EECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC-CCCCEEEEECCCCCCCEEE
T ss_conf 7-8614576212597899994001121899999999974389868999999828757589-7998899988899998899
No 41
>1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria, purine salvage, transition state inhibitor; HET: IRP; 2.00A {Plasmodium falciparum} SCOP: c.61.1.1
Probab=98.08 E-value=6.7e-06 Score=60.37 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=98.0
Q ss_pred CCEEEEEHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCC
Q ss_conf 4200000100247430003728-999999999999874865677201200120477999999819960010011-76532
Q gi|254780336|r 252 ERMCIFEYVYFARPDSIISGRS-IYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVG 329 (488)
Q Consensus 252 ~~~C~FEyIYFarpdS~~~g~~-Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~g 329 (488)
..+|+.|. |--.-++++-... +.+.=.+|+.++.+...-+.-+++||-..|.+.|--.++++..+..-..+. ..+.+
T Consensus 28 ~~f~~p~~-y~~~~~kVli~~~~I~~rI~rLA~eI~~~~~~~~~vivgIL~Gg~~Fa~dL~r~L~~~~~~~~~~~~~~~~ 106 (231)
T 1cjb_A 28 DSFMIPAH-YKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLF 106 (231)
T ss_dssp GGSCCCTT-TGGGEEEEEECHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETTTHHHHHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHCCCCHH-HHCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 54478744-64241389128999999999999999998499976999980587999999999851020465133015667
Q ss_pred CE-EEEC---CHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC--C----CCCC
Q ss_conf 10-1106---44677765320134324553389328974035333338889999985399789999658--9----8058
Q gi|254780336|r 330 RT-FIEP---SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS--P----MVLY 399 (488)
Q Consensus 330 Rt-FI~p---~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s--P----pi~~ 399 (488)
-. |+.- .+......+... ......++||.|+||||=+=.|.|++.+++.|++.||++|.++.-- | .-..
T Consensus 107 ~~~~i~~~~y~~~~s~~~v~~~-~~~~~~i~gk~VLLVDDIlDTG~TL~~l~~~L~~~gpksv~vavLldKr~~r~~~i~ 185 (231)
T 1cjb_A 107 GEHYVRVKSYCNDQSTGTLEIV-SEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFK 185 (231)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE-ESCGGGGBTCEEEEEEEEESSSHHHHHHHHHHGGGCBSEEEEEEEEEECCTTCCCCB
T ss_pred CEEEEEEEECCCCCCCCCEEEE-CCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC
T ss_conf 5069999924997557724672-477154540707998321003269999999997169995588844411422457999
Q ss_pred CCCCCEECCCH
Q ss_conf 86565005897
Q gi|254780336|r 400 PDFYGIDIPDP 410 (488)
Q Consensus 400 pc~yGid~p~~ 410 (488)
|.|.|.++|.+
T Consensus 186 ~Dy~Gfeipd~ 196 (231)
T 1cjb_A 186 ADFVGFSIPDH 196 (231)
T ss_dssp CSEEEEEECSS
T ss_pred CCEEEEECCCC
T ss_conf 87899983994
No 42
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg IONS, pyrophosphate, transition state analogue; HET: IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1dqp_A*
Probab=98.02 E-value=1.1e-06 Score=66.02 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEEC-CCCCCCEEEECCHHHHHHHHHHCCCC
Q ss_conf 99999999999987486--5677201200120477999999819960010011-76532101106446777653201343
Q gi|254780336|r 274 IYVSRRNMGKNLAKESP--VIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIR-NHYVGRTFIEPSHHIRAFGVKLKHSA 350 (488)
Q Consensus 274 Vy~~R~~lG~~La~~~~--~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvk-n~y~gRtFI~p~~~~R~~~v~~K~~~ 350 (488)
+...=.++++++.+... -+..++++|-..|.+.|--..+++++|++..+++ ..|.|-+ ... .++ ....
T Consensus 41 I~~~v~elA~qIne~Yk~~~~~lvvV~VLkG~~~FaadL~r~L~~~~~idfi~vsSY~g~~------s~g--~v~-i~~~ 111 (230)
T 1dqn_A 41 CKALAADTARRMNEYYKDVAEPVTLVALLTGAYLYASLLTVHLTFPYTLHFVKVSSYKGTR------QES--VVF-DEED 111 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCEEEEEETTTHHHHHHHHHTTCCSCEEEEEECCEEEECSS------CEE--EEC-CHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCC------CCC--EEE-EECC
T ss_conf 9999999999999985145998599998467799999999757998389999997608987------564--225-6227
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 245533893289740353333388899999853997899996
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
++..++||+|+||||=+=.|.|++.+++.|+.+||+.+.+..
T Consensus 112 l~~~i~gk~VLIVDDIiDTG~TL~~l~~~L~~~~~~Sv~v~~ 153 (230)
T 1dqn_A 112 LKQLKEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFVKD 153 (230)
T ss_dssp HHHHHHCSSEEEEEEEESSSHHHHHHHHHSTTCEEEEEEESC
T ss_pred CCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 641238974899743671744699999877508986899954
No 43
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=98.01 E-value=1.9e-05 Score=57.08 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=86.4
Q ss_pred HHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH
Q ss_conf 99999999987---486567720120012047799999981996001001176532101106446777653201343245
Q gi|254780336|r 277 SRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488)
Q Consensus 277 ~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488)
.+..++..+++ +...+.|+|+|+|-.|+|.|...|..+++|+. ++|..-. ..-+. +. .-..
T Consensus 70 ~~~~i~~~~~~~i~~~~~~~d~i~G~~~~Gi~~a~~ia~~l~~p~~--~vRK~~K--------~~G~~-----~~-ieg~ 133 (234)
T 3m3h_A 70 VRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMC--YVRSKAK--------GHGKG-----NQ-IEGK 133 (234)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEC---CHHHHHHHHHHHTCCEE--EEC----------------------CC-EESC
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEE--EEEECCC--------CCCCC-----CE-ECCC
T ss_conf 9999999999999861888878851677799999999834585289--9972388--------87644-----01-1464
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEE
Q ss_conf 53389328974035333338889999985399789999658980588656500589788854669998899987099778
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl 433 (488)
..+|++|++|||=+-.|++....|+.||++|+.-+.+.+- +|-.. . .-.|.-+..|....
T Consensus 134 ~~~G~~VlIVDDViTTG~Si~~ai~~lr~~G~~V~~v~vi-----------vdr~~---~------gg~e~l~~~Gv~~~ 193 (234)
T 3m3h_A 134 AEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSI-----------FTYEL---E------AGKEKLEAANVASY 193 (234)
T ss_dssp CCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEE-----------EECCC---H------HHHHHHHHTTCCEE
T ss_pred CCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EECCC---H------HHHHHHHHCCCCEE
T ss_conf 4579559998530034722799999999789979999999-----------98774---4------06999996799789
Q ss_pred EEECHHHHHHHH
Q ss_conf 883398999861
Q gi|254780336|r 434 GFLSVDGLYNAI 445 (488)
Q Consensus 434 ~yls~e~l~~ai 445 (488)
.-++++++.+.+
T Consensus 194 sL~t~~dl~~~~ 205 (234)
T 3m3h_A 194 SLSDYSALTEVA 205 (234)
T ss_dssp ESSCHHHHHHHH
T ss_pred EECCHHHHHHHH
T ss_conf 977699999999
No 44
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=97.99 E-value=5.3e-06 Score=61.10 Aligned_cols=157 Identities=11% Similarity=0.135 Sum_probs=88.9
Q ss_pred HHHHCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHH----HHHH-------H------H-
Q ss_conf 98748656772012001204-77999999819960010011765321011064467----7765-------3------2-
Q gi|254780336|r 285 LAKESPVIADIVVPIPDGGV-PAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHI----RAFG-------V------K- 345 (488)
Q Consensus 285 La~~~~~~~DiV~~VPdsg~-~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~----R~~~-------v------~- 345 (488)
+.++.+-..+.|+-.||.|- .-|..||+.++.++.- +.|.|....+-+..+... |... + .
T Consensus 183 ~~~~~~~~~~~VvVsPD~Ga~kRa~~~a~~L~~~~~~-~~k~r~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~e~ 261 (379)
T 2ji4_A 183 IQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAV-IHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEK 261 (379)
T ss_dssp HHHHSTTGGGEEEEESSGGGHHHHHHHHHHTTCEEEE-EC----------------------------------------
T ss_pred HHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEE-EEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9985156567646438977899999999985999689-987621455423204457754332112354433344576642
Q ss_pred HCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHH
Q ss_conf 01343245533893289740353333388899999853997899996589805886565005897888546699988999
Q gi|254780336|r 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMC 425 (488)
Q Consensus 346 ~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~ 425 (488)
.+++ +-..++||.+|+|||=|=.|.|+...++.||+.||++|++..+-+-...++.--+.-+.-++++.-| |+..-.
T Consensus 262 ~~~~-viGDVkGk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~~l~~s~i~~Iv~Tn--TIp~~~ 338 (379)
T 2ji4_A 262 PPIT-VVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAPRRIEESAIDEVVVTN--TIPHEV 338 (379)
T ss_dssp -CCC-EESCCTTSEEEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEEEECCCTTHHHHHHHSSCCEEEEES--SSCCHH
T ss_pred CCCE-EEECEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECC--CCCCCH
T ss_conf 1000-2301200389995434331266999999999769983799997976881699999728999899868--867873
Q ss_pred HHHCCCEEEEECHHHHH-HHH
Q ss_conf 87099778883398999-861
Q gi|254780336|r 426 NFIGVDSLGFLSVDGLY-NAI 445 (488)
Q Consensus 426 ~~igadsl~yls~e~l~-~ai 445 (488)
+.+..+.+..+|+..|. +||
T Consensus 339 ~~~~~~Ki~vlsVa~llA~aI 359 (379)
T 2ji4_A 339 QKLQCPKIKTVDISMILSEAI 359 (379)
T ss_dssp HHHTCTTEEEECCHHHHHHHH
T ss_pred HHCCCCCCEEEEHHHHHHHHH
T ss_conf 562589819988399999999
No 45
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=97.90 E-value=4.7e-05 Score=54.31 Aligned_cols=134 Identities=15% Similarity=0.235 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH
Q ss_conf 999999999987---48656772012001204779999998199600100117653210110644677765320134324
Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488)
Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488)
+.+..++..+++ +...+.|.|+|+|-.|+|.|-..|..+++|+- ++|..- ...-....+. -
T Consensus 49 ~~~~~i~~~~~~~i~~~~~~~d~i~G~~~~gipla~~ia~~~~~p~~--~vRKe~--------K~hG~~~~ie------G 112 (211)
T 2aee_A 49 KTRDLIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFA--YIRSKP--------KDHGAGNQIE------G 112 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHHTCCEE--EECSSC--------C----CCSEE------S
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCE--EEECCC--------CCCCHHHHHH------C
T ss_conf 89999999999888750555363403134469999999997579823--554134--------5533123221------0
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE
Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488)
...+|++|++|||-|-.|.++...++.|+++|+.=+.+.+- +|-.. . .-.|.-+..|..-
T Consensus 113 ~~~~g~~VliVEDViTTG~S~~~ai~~l~~~g~~V~~~~vi-----------vdr~~---~------~~~~~l~~~gi~~ 172 (211)
T 2aee_A 113 RVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAI-----------FTYEL---P------KASQNFKEAGIKL 172 (211)
T ss_dssp CCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEE-----------EECCC---H------HHHHHHHHHTCCE
T ss_pred CCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EECCC---H------HHHHHHHHCCCCE
T ss_conf 13799989998530456721576544688749806699999-----------98886---1------6899999669969
Q ss_pred EEEECHHHHHHHH
Q ss_conf 8883398999861
Q gi|254780336|r 433 LGFLSVDGLYNAI 445 (488)
Q Consensus 433 l~yls~e~l~~ai 445 (488)
..-.++++|.+.+
T Consensus 173 ~sl~t~~~ll~~~ 185 (211)
T 2aee_A 173 ITLSNYTELIAVA 185 (211)
T ss_dssp EESCCHHHHHHHH
T ss_pred EEECCHHHHHHHH
T ss_conf 9956599999999
No 46
>2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A
Probab=97.84 E-value=2.9e-05 Score=55.85 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=85.6
Q ss_pred CCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH
Q ss_conf 7720120012047-799999981996001001176532101106446777653201343245533893289740353333
Q gi|254780336|r 293 ADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 (488)
Q Consensus 293 ~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt 371 (488)
.++|+--||.|-. -|..||+.+|.|+.- +-|.|.... .+ ...++-..++||.+++|||=|=.|.
T Consensus 163 ~~~vvvsPD~Ga~kra~~~a~~l~~~~~~-~~K~R~~~~------------~v--~~~~~~gdV~gk~vIIVDDii~TGg 227 (326)
T 2h06_A 163 RNCTIVSPDAGGAKRVTSIADRLNVDFAL-IHKERKKAN------------EV--DRMVLVGDVKDRVAILVDDMADTCG 227 (326)
T ss_dssp GGCEEEESSGGGHHHHHHHHHHHTCEEEE-EEECC--------------------CCEEEESCCTTEEEEEEEEEESSCH
T ss_pred CCCEEECCCCCHHHHHHHHHHHHCCCEEE-EEEEECCCC------------CE--EEEEEECCCCCCEEEEECCHHHCHH
T ss_conf 67769867955799999999982897434-655524898------------14--2467621332440588641553326
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCC-CCHHHHHHHHCCCEEEEECHHHHH-HHH
Q ss_conf 38889999985399789999658980588656500589788854669-998899987099778883398999-861
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKC-SSPQEMCNFIGVDSLGFLSVDGLY-NAI 445 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~-~~~eei~~~igadsl~yls~e~l~-~ai 445 (488)
|+-+.++.|++.||++|++..+-+-...++.--+.=+.-++++.-+. ...++.. ..+.+.-+|+..|. ++|
T Consensus 228 Tl~~aa~~Lk~~GA~~V~~~aTHglfs~~a~e~l~~s~i~~ivvTnTIp~~~~~~---~~~ki~vlsva~llAeaI 300 (326)
T 2h06_A 228 TICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMK---HCSKIQVIDISMILAEAI 300 (326)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEECCCTTHHHHHHHSCEEEEEEETTSCCHHHHH---HCTTEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCHHHC---CCCCCEEEEHHHHHHHHH
T ss_conf 7999999998579986568864344581799998647998899868856842434---589829988499999999
No 47
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=97.80 E-value=7e-05 Score=53.11 Aligned_cols=138 Identities=18% Similarity=0.287 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHC----CCCEEHHEEC-CCCCCCEEEECCHHHHHHH
Q ss_conf 37289999999999998748-6567720120012047799999981----9960010011-7653210110644677765
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKES-PVIADIVVPIPDGGVPAAIGYAKES----GIPFEQGIIR-NHYVGRTFIEPSHHIRAFG 343 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~-~~~~DiV~~VPdsg~~aA~gya~~~----gip~~~~lvk-n~y~gRtFI~p~~~~R~~~ 343 (488)
+-..+...=.+|+.+.++.. .-+..+++++-..|.+.|.-..+.+ +.+.....+. .+|...+ ......
T Consensus 9 s~~eI~~~I~rlA~qI~e~~~g~~~~vligi~~Gg~~fa~~L~~~l~~~~~~~~~~~~~~~~~y~~~~------~~~~~~ 82 (181)
T 1ufr_A 9 NAPEMRRALYRIAHEIVEANKGTEGLALVGIHTRGIPLAHRIARFIAEFEGKEVPVGVLDITLYRDDL------TEIGYR 82 (181)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTSSTTEEEEEETTTHHHHHHHHHHHHHHHHCSCCCEEEEEEEC-----------------
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC------CCCCCC
T ss_conf 99999999999999999966999888999960628999999999877532898635889888863644------447875
Q ss_pred HHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC------CCCCCCCCCCCEECCCH-HHHH
Q ss_conf 320134324553389328974035333338889999985399-78999965------89805886565005897-8885
Q gi|254780336|r 344 VKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRVA------SPMVLYPDFYGIDIPDP-TALL 414 (488)
Q Consensus 344 v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri~------sPpi~~pc~yGid~p~~-~eLi 414 (488)
...+-......++||+|+||||=+=.|.|++.+++.|.+.|+ +.|.++.- .-| ..|.|.|.++||. +|.+
T Consensus 83 ~~~~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~l~~~g~~~~v~~avL~kk~~r~~~-i~~DyvGf~ipt~~~e~v 160 (181)
T 1ufr_A 83 PQVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYLAVLVDRGHRELP-IRADFVGKNVPTSRSEVV 160 (181)
T ss_dssp CEEEEEEECSCCTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECCCCSSS-BCCSEEEEECCCCTTCEE
T ss_pred CEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCCEEEEECCCCCCCEE
T ss_conf 244135677665685699984202656069999999987399956999999738767489-799889998889999889
No 48
>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B}
Probab=97.78 E-value=6.1e-06 Score=60.62 Aligned_cols=143 Identities=20% Similarity=0.184 Sum_probs=86.2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCE
Q ss_conf 999987486567720120012047-7999999819960010011765321011064467776532013432455338932
Q gi|254780336|r 282 GKNLAKESPVIADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRV 360 (488)
Q Consensus 282 G~~La~~~~~~~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~v 360 (488)
...+.+. .. .+.|+--||.|-. -|..||+.+|.|+.- +-|.|-. ++ .+ +..++...++||.+
T Consensus 157 ~~~~~~~-~~-~~~vvvsPD~Ga~kra~~~A~~l~~~~~~-~~K~R~~------~~------~v--~~~~~~gdv~gr~v 219 (319)
T 3dah_A 157 LGDLRKQ-NY-PDLLVVSPDVGGVVRARALAKQLNCDLAI-IDKRRPK------AN------VA--EVMNIIGEVEGRTC 219 (319)
T ss_dssp HHHHHTT-CC-TTEEEECCSSTTHHHHHHHHHHTTCEEEC-----------------------------------CCSEE
T ss_pred HHHHHHH-CC-CCCEEECCCCCHHHHHHHHHHHCCCCEEE-EEEEECC------CC------CE--EEEECCCCCCCCEE
T ss_conf 8999974-79-87389856885699999989864998899-9999189------99------36--77314434379878
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHH
Q ss_conf 89740353333388899999853997899996589805886565005897888546699988999870997788833989
Q gi|254780336|r 361 VLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDG 440 (488)
Q Consensus 361 vlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~ 440 (488)
|+|||=|=.|.|+-..+++|++.||++|++..+-+-...++.--+.-..-++++.-+ |+..=.+.+..+.+..+|+..
T Consensus 220 IIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THglfs~~a~e~l~~s~i~~iv~Td--Tip~~~~~~~~~k~~visva~ 297 (319)
T 3dah_A 220 VIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASALDELVVTD--TIPLSAESLACPKIRALSSAG 297 (319)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEEECCCTTHHHHHHTSSCSEEEEES--SSCCCHHHHHCTTEEEECCHH
T ss_pred EEECCHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECC--CCCCCHHHCCCCCEEEEEHHH
T ss_conf 973734406201999999999779986489974664480799998618999899878--977874564589809988399
Q ss_pred HHH
Q ss_conf 998
Q gi|254780336|r 441 LYN 443 (488)
Q Consensus 441 l~~ 443 (488)
|..
T Consensus 298 liA 300 (319)
T 3dah_A 298 LLA 300 (319)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 49
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=97.78 E-value=9.9e-05 Score=52.01 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH
Q ss_conf 999999999987---48656772012001204779999998199600100117653210110644677765320134324
Q gi|254780336|r 276 VSRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488)
Q Consensus 276 ~~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488)
+.+..++..+++ +...+.|+|+|+|-.|+|.|...|...++|+. +++..-.+ .-+...+ --
T Consensus 81 ~~~~~i~~~~~~~i~~~~~~~d~i~G~a~~gIp~a~~ia~~~~~p~~--~vRke~K~--------~G~~~~i------eg 144 (243)
T 3dez_A 81 ETRTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPLA--YIRSKPKD--------HGAGNQI------EG 144 (243)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHTTCCEE--EECSSCC-------------CCE------ES
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCE--EEEEEECC--------CCCCEEE------EC
T ss_conf 99999999999999862245663423311218999999986179841--46764047--------7630467------30
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE
Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488)
..-+|+||++|||=|-.|+++...|+.|+++|+.=+.+.+- +|- ++.-+ .+.+ +..|+.-
T Consensus 145 ~~~~g~rVlIVEDViTTGgSileai~~l~~~G~~V~~v~vi-----------vDR---~~~g~-----~~~l-~~~Gv~~ 204 (243)
T 3dez_A 145 RVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAI-----------FTY---ELPKA-----TANF-EKASVKL 204 (243)
T ss_dssp CCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEE-----------EEC---CCHHH-----HHHH-HHHTCCE
T ss_pred CCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EEC---CCCHH-----HHHH-HHCCCCE
T ss_conf 35999989998511456744589999999879979999999-----------988---86217-----9999-9669979
Q ss_pred EEEECHHHHHHHH
Q ss_conf 8883398999861
Q gi|254780336|r 433 LGFLSVDGLYNAI 445 (488)
Q Consensus 433 l~yls~e~l~~ai 445 (488)
..-+++++|.+..
T Consensus 205 ~sL~t~~dll~~l 217 (243)
T 3dez_A 205 VTLSNYSELIKVA 217 (243)
T ss_dssp EESSCHHHHHHHH
T ss_pred EEECCHHHHHHHH
T ss_conf 9948599999999
No 50
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=97.78 E-value=4.7e-05 Score=54.31 Aligned_cols=134 Identities=25% Similarity=0.219 Sum_probs=80.3
Q ss_pred CCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 720120012047-7999999819960010011765321011064467776532013432455338932897403533333
Q gi|254780336|r 294 DIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488)
Q Consensus 294 DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488)
+.|+--||.|-. -|..||+.+|.||.- +-|.|... + .+. ...+...++||.+|+|||=|=.|.|
T Consensus 168 ~~vvVaPD~Ga~~ra~~~A~~l~~~~~~-~~K~R~~~-~-----------~v~--~~~~~gdV~gk~vIIVDDii~TGgT 232 (317)
T 1dku_A 168 DIVIVSPDHGGVTRARKLADRLKAPIAI-IDKRRPRP-N-----------VAE--VMNIVGNIEGKTAILIDDIIDTAGT 232 (317)
T ss_dssp SEEEEESSGGGHHHHHHHHHHTTCCEEE-EECC-----------------------CEEESCCTTCEEEEECSEESSCHH
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCCEEE-EEEEECCC-C-----------CEE--EECCCCCCCCCEEEEECCCCCCCCH
T ss_conf 5547789943799999999982999899-99870799-9-----------413--4001235479789986750014601
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHH-HHH
Q ss_conf 8889999985399789999658980588656500589788854669998899987099778883398999-861
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLY-NAI 445 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~-~ai 445 (488)
+-...+.|+++||++|++..+-+=..-+-.--+.-+.-++++.-| |+. ..+....+.+.-+++..|. ++|
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~THglfs~~A~~~l~~s~i~~iv~Tn--Tip-~~~~~~~~k~~~isva~llA~aI 303 (317)
T 1dku_A 233 ITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVTN--SIK-LPEEKKIERFKQLSVGPLLAEAI 303 (317)
T ss_dssp HHHHHHHHHHTTCSEEEEECSEECCCTTHHHHHHTSSEEEEEEET--TSC-C----CCSSEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEECC--CCC-CHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 999999999769977899965343483799998607998899858--956-80352568629987399999999
No 51
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=97.76 E-value=7.8e-05 Score=52.74 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=90.4
Q ss_pred HHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHC
Q ss_conf 99999987---486567720120012047799999981996001001176532101106446777653201343245533
Q gi|254780336|r 280 NMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILA 356 (488)
Q Consensus 280 ~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~ 356 (488)
+++..+|+ +...+.|+|+|++-.|+|-|...|.+++.++.. .+.--|+-...+ ..+ ..++. .-...+
T Consensus 66 ~l~~~~a~~i~~~~~~~D~i~G~a~gGIpla~~vA~~l~~~~~~------~~p~~~~RKe~K--~hG-~~~~i-eG~~~~ 135 (232)
T 3mjd_A 66 TLADYYAQLIIKSDVKYDILFGPAYKGIPLVAAISTVLALKYNI------DMPYAFDRKEAK--DHG-EGGVF-VGADMT 135 (232)
T ss_dssp HHHHHHHHHHHHCCCCCSEEEECTTTHHHHHHHHHHHHHHHHCC------CCBEEEECCC----------CCE-EESCCT
T ss_pred HHHHHHHHHHHHHCCCCCEEECCHHCCCHHHHHHHHHHHHHHCC------CCCEEEEECCCC--CCC-CCCCC-CCCCCC
T ss_conf 99999999998627775767230202205789999999985177------887168841135--567-66643-576566
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHH-CCCCCHHHHHHHHCCCEEEE
Q ss_conf 89328974035333338889999985399789999658980588656500589788854-66999889998709977888
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLA-NKCSSPQEMCNFIGVDSLGF 435 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia-~~~~~~eei~~~igadsl~y 435 (488)
|++|++|||-|-.|.|++..++.||++|++=+-+.+. +| |+|-=. +.....+++.+..|..-..-
T Consensus 136 g~~VlIVDDViTTG~S~~~ai~~l~~~G~~V~~v~vi-----------vD---R~egg~~~~~~a~~~~~~~~gi~~~Sl 201 (232)
T 3mjd_A 136 NKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLS-----------ID---RQEKAKDSDISATKKISQDFNIPVLAV 201 (232)
T ss_dssp TCEEEEECSCCSSSHHHHHHHHHHHTTTCEEEEEEEE-----------EE---CCBCCTTSSSCHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------EE---HHHCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 5515898310356857899999999869979999999-----------98---012364333368999999669869997
Q ss_pred ECHHHHHHHH
Q ss_conf 3398999861
Q gi|254780336|r 436 LSVDGLYNAI 445 (488)
Q Consensus 436 ls~e~l~~ai 445 (488)
.+++++.+..
T Consensus 202 ~~l~di~~~~ 211 (232)
T 3mjd_A 202 TNFESIFEYV 211 (232)
T ss_dssp EEHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 7599999999
No 52
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
Probab=97.71 E-value=0.00016 Score=50.57 Aligned_cols=139 Identities=20% Similarity=0.262 Sum_probs=92.2
Q ss_pred HHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCC---------CCEEHHEECCCCCCCEEEECCHHHHHHHH
Q ss_conf 99999999987---4865677201200120477999999819---------96001001176532101106446777653
Q gi|254780336|r 277 SRRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESG---------IPFEQGIIRNHYVGRTFIEPSHHIRAFGV 344 (488)
Q Consensus 277 ~R~~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~g---------ip~~~~lvkn~y~gRtFI~p~~~~R~~~v 344 (488)
...+++..++. +...+.|+|+|+|-.|+|-|...|.+++ +|+. ++|. ..+ +.+-
T Consensus 49 ~l~~l~~~~~~~i~~~~~~~d~I~G~a~gGIPla~~va~~l~~~~~~~~~~~p~~--~~Rk----------e~K--~hG~ 114 (226)
T 2ps1_A 49 LLSNLATAYAIAIIQSDLKFDVIFGPAYKGIPLAAIVCVKLAEIGGSKFQNIQYA--FNRK----------EAK--DHGE 114 (226)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEECTTTHHHHHHHHHHHHHHHSTTTTTTCEEE--EEEE----------EEE--SSTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEE--EEEC----------CCC--CCCC
T ss_conf 9999999999999872778543357122440778999999997410015788705--7842----------545--5677
Q ss_pred HHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHC----CCCC
Q ss_conf 201343245533893289740353333388899999853997899996589805886565005897888546----6999
Q gi|254780336|r 345 KLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLAN----KCSS 420 (488)
Q Consensus 345 ~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~----~~~~ 420 (488)
+ +.. .-...+|++|++|||=|-.|+|+...|+.||++|++=+.+.+. + +|+|.-+. ....
T Consensus 115 ~-~~i-eG~~~~G~~VlIVDDViTTG~S~~eai~~l~~~G~~V~~~~vi-----------v---DR~e~g~~~~~~~~~a 178 (226)
T 2ps1_A 115 G-GII-VGSALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIA-----------L---DRQEVVSTDDKEGLSA 178 (226)
T ss_dssp C-EEE-EESCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEE-----------E---ECCBBSCTTCSSCCBH
T ss_pred C-CEE-CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------E---ECHHCCCCCCCCCCHH
T ss_conf 7-424-3754779707998610356845899999999879989999999-----------9---7112045554221017
Q ss_pred HHHHHHHHCCCEEEEECHHHHHHHH
Q ss_conf 8899987099778883398999861
Q gi|254780336|r 421 PQEMCNFIGVDSLGFLSVDGLYNAI 445 (488)
Q Consensus 421 ~eei~~~igadsl~yls~e~l~~ai 445 (488)
.+|+.+..|..-..-.+++++.+..
T Consensus 179 ~~~~~~~~gi~v~Sl~~l~~li~~~ 203 (226)
T 2ps1_A 179 TQTVSKKYGIPVLSIVSLIHIITYL 203 (226)
T ss_dssp HHHHHHHHTCCEEEEEEHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 9999986498199973499999998
No 53
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=97.70 E-value=5.9e-05 Score=53.60 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=64.3
Q ss_pred CCCCCCCCCCHHH-HHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHH
Q ss_conf 7720120012047-799999981996001001176532101106446777653201343245533893289740353333
Q gi|254780336|r 293 ADIVVPIPDGGVP-AAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGT 371 (488)
Q Consensus 293 ~DiV~~VPdsg~~-aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGt 371 (488)
.+.|+-.||.|-. .|..+|+.+|.|+.. +-|.|- ..-.....+....++||.+++|||=|=-|.
T Consensus 155 ~~~vvvsPD~g~~kra~~~a~~l~~~~~~-~~k~r~--------------~~~~~~~~~~~gdv~g~~viIvDDii~tGg 219 (284)
T 1u9y_A 155 NDPIVLAPDKGALEFAKTASKILNAEYDY-LEKTRL--------------SPTEIQIAPKTLDAKDRDVFIVDDIISTGG 219 (284)
T ss_dssp SSCEEEESSGGGHHHHHHHHHHHTCCEEE-BC------------------------CCBSSCCCTTCCEEEEEEECSSSH
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCEEE-EECCCC--------------CCCEEEEECCCCCCCCCEEEEECCHHHHHH
T ss_conf 68689847986578999999857663234-202345--------------664058831334556653799745454267
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 388899999853997899996589
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sP 395 (488)
|+....+.||+.||++|++..+-+
T Consensus 220 Tl~~aa~~Lk~~GA~~V~~~~THg 243 (284)
T 1u9y_A 220 TMATAVKLLKEQGAKKIIAACVHP 243 (284)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 799999999866998699999797
No 54
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=97.62 E-value=0.00027 Score=48.92 Aligned_cols=137 Identities=22% Similarity=0.217 Sum_probs=89.5
Q ss_pred HHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE----HHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHH
Q ss_conf 9999987---48656772012001204779999998199600----1001176532101106446777653201343245
Q gi|254780336|r 281 MGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFE----QGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRT 353 (488)
Q Consensus 281 lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~----~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~ 353 (488)
++..+++ +...+.|+|+|+|-.|+|-|...|..++.++. ..+++. .. ...+.. +. +-.
T Consensus 74 l~~~~~~~i~~~~~~~D~I~G~a~gGIpla~~vA~~l~~~~~~~~p~~~~Rk----------e~--K~~G~~-~~--ieG 138 (238)
T 3n2l_A 74 LGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAVALADHHDVDTPYCFNRK----------EA--KNHGEG-GN--LVG 138 (238)
T ss_dssp HHHHHHHHHHHHTCCCSEEEECTTTHHHHHHHHHHHHHHHSCCCCBEEEECC----------C-----------C--EEE
T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC----------CC--CCCCCC-CC--CCC
T ss_conf 9999999998728774568413223047789999999981398876399952----------66--455657-41--015
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEE
Q ss_conf 53389328974035333338889999985399789999658980588656500589788854669998899987099778
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSL 433 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl 433 (488)
...+.||++|||-|-.|.+++..++.|+++|+.=+.+.+. + +|++--..+....+|+.+..|..-.
T Consensus 139 ~~~~grVlIVDDViTTG~Si~~ai~~l~~~G~~V~~v~vi-----------v---DR~~gg~~~~~a~~~~~~~~gi~~~ 204 (238)
T 3n2l_A 139 SKLEGRVMLVDDVITAGTAIRESMELIQANKADLAGVLVA-----------I---DRQEKGKGELSAIQEVERDFGCAVI 204 (238)
T ss_dssp SCCCSEEEEECSCCSSSHHHHHHHHHHHHTTCEEEEEEEE-----------E---ECCCBCSSSSBHHHHHHHHHCCEEE
T ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEE-----------E---ECCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 5677767999765166845899999999879948999998-----------6---5021554202289999997498299
Q ss_pred EEECHHHHHHHHC
Q ss_conf 8833989998611
Q gi|254780336|r 434 GFLSVDGLYNAIC 446 (488)
Q Consensus 434 ~yls~e~l~~ai~ 446 (488)
.-.+++++.+.+-
T Consensus 205 Sl~tl~dl~~~l~ 217 (238)
T 3n2l_A 205 SIVSLTDLITYLE 217 (238)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHHH
T ss_conf 9813999999999
No 55
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=97.21 E-value=0.0022 Score=42.44 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=85.9
Q ss_pred HHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHCC----CCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCH
Q ss_conf 99999987---4865677201200120477999999819----9600100117653210110644677765320134324
Q gi|254780336|r 280 NMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESG----IPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 (488)
Q Consensus 280 ~lG~~La~---~~~~~~DiV~~VPdsg~~aA~gya~~~g----ip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~ 352 (488)
.++..+++ +...+.|+|+|+|-.|+|-|.+.|.+++ .++...+++....+ .-+ .+. +-
T Consensus 48 ~i~~~~~~~~~~~~~~~d~i~g~a~ggipla~~va~~l~~~~~~~~p~~~~Rke~k~--------~G~-----~~~--ie 112 (213)
T 1lh0_A 48 LLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKD--------HGE-----GGS--LV 112 (213)
T ss_dssp HHHHHHHHHHHHHCCCCSEEECCTTTHHHHHHHHHHHHHHHHCCCCBEEEECSSCCS--------STT-----CSS--EE
T ss_pred HHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC--------CCC-----CCC--EE
T ss_conf 999999999997167756574304423889999999999843888761899504544--------677-----760--20
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCE
Q ss_conf 55338932897403533333888999998539978999965898058865650058978885466999889998709977
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDS 432 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igads 432 (488)
....+.+|++|||-|-.|.++...++.|+++|++=+.+.+- + +|++--.......+|..+..|..-
T Consensus 113 G~~~~~rVliVeDViTTG~S~~e~i~~l~~~G~~V~~v~vi-----------v---DR~~g~~~~~~~~~e~~~~~Gi~~ 178 (213)
T 1lh0_A 113 GSALQGRVMLVDDVITAGTAIRESMEIIQAHGATLAGVLIS-----------L---DRQERGRGEISAIQEVERDYGCKV 178 (213)
T ss_dssp ESCCCSEEEEECSCCSSSCHHHHHHHHHHHTTCEEEEEEEE-----------E---ECCBBCSSSSBHHHHHHHHHCCEE
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE-----------E---EECCCCCCHHHHHHHHHHHCCCEE
T ss_conf 57777848999723142565899999999879979999999-----------8---742366421658999998659739
Q ss_pred EEEECHHHHHHHHC
Q ss_conf 88833989998611
Q gi|254780336|r 433 LGFLSVDGLYNAIC 446 (488)
Q Consensus 433 l~yls~e~l~~ai~ 446 (488)
..-++++++.+.+.
T Consensus 179 ~sl~t~~dll~~l~ 192 (213)
T 1lh0_A 179 ISIITLKDLIAYLE 192 (213)
T ss_dssp EEEEEHHHHHHHHH
T ss_pred EEECCHHHHHHHHH
T ss_conf 99730999999999
No 56
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=94.02 E-value=0.1 Score=30.55 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=59.7
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHH
Q ss_conf 20120012047799999981996001001176532101106446777653201343245533893289740353333388
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSV 374 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k 374 (488)
++++|.-+|.+-..|+.+-+-- -..|.+-=.....|+ .-+..++-+++.++++.|+|.|.=+-.|.|+-
T Consensus 73 ~~V~IlRAG~~m~~g~~~~~p~-a~ig~i~~~R~~~t~----------~p~~yy~kLP~~i~~~~villDPmlATG~s~~ 141 (209)
T 1i5e_A 73 GVIPILRAGIGMVDGILKLIPA-AKVGHIGLYRDPQTL----------KPVEYYVKLPSDVEERDFIIVDPMLATGGSAV 141 (209)
T ss_dssp EEEEBTTGGGGGHHHHHHHCTT-SEECEEEEECCTTCS----------SCEEEEEECCTTTTTSEEEEECSEESSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCC-CCCCEEEEECCCCCC----------CCEEEEEECCCCCCCCEEEEECHHHHCCHHHH
T ss_conf 8984054533478899985867-600534653046888----------73876243586510386897586886477799
Q ss_pred HHHHHHHHCCCCEEEEEE
Q ss_conf 899999853997899996
Q gi|254780336|r 375 KIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 375 ~iv~~lr~aGa~evh~ri 392 (488)
..++.|++.|+++|++.+
T Consensus 142 ~ai~~L~~~G~~~I~~vs 159 (209)
T 1i5e_A 142 AAIDALKKRGAKSIKFMC 159 (209)
T ss_dssp HHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHHCCCCCEEEEE
T ss_conf 999999966998579999
No 57
>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli}
Probab=91.30 E-value=0.16 Score=29.10 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHH
Q ss_conf 20120012047799999981996001001176532101106446777653201343245533893289740353333388
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSV 374 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k 374 (488)
++++|--+|.+-..|+.+.+- . .-+|.-.+..+. .. .....-++-+++.+.++.|+|+|.=+--|.|+-
T Consensus 72 ~~V~ILRAGl~m~~g~~~~~P--~-------a~~g~i~~~r~~-~t-~~~~~y~~klP~~~~~~~villDPmlATG~s~~ 140 (208)
T 2ehj_A 72 TVVPILRAGLGMMDGVLENVP--S-------ARISVVGMYRNE-ET-LEPVPYFQKLVSNIDERMALIVDPMLATGGSVI 140 (208)
T ss_dssp EEEEBTTGGGGGHHHHHHHCT--T-------CEECEEEEEECT-TT-CCEEEEEEECCSCGGGCEEEEEEEEESSCHHHH
T ss_pred EEEEEECCHHHHHHHHHHHCC--C-------CEEEEEEEECCC-CC-CCCEEEEEECCCCCCCCEEEEECHHHHCCHHHH
T ss_conf 999840432258999987365--3-------504266422267-77-885788986144566676999683674567799
Q ss_pred HHHHHHHHCCCCEEEEEE
Q ss_conf 899999853997899996
Q gi|254780336|r 375 KIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 375 ~iv~~lr~aGa~evh~ri 392 (488)
..++.|++.|+++|++..
T Consensus 141 ~ai~~L~~~G~~~I~iv~ 158 (208)
T 2ehj_A 141 ATIDLLKKAGCSSIKVLV 158 (208)
T ss_dssp HHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEE
T ss_conf 999999857998289999
No 58
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=90.79 E-value=0.16 Score=29.23 Aligned_cols=85 Identities=25% Similarity=0.365 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCEEH-HEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 201200120477999999819-96001-0011765321011064467776532013432455338932897403533333
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESG-IPFEQ-GIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~g-ip~~~-~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488)
++++|--+|.+-..|+.+.+- .+... ++-+|. .|+- ...-++-+++.+.++.|+|+|-=+-.|.|
T Consensus 85 ~~V~ILRaGl~m~~g~~~~~P~a~~g~i~i~r~~---~t~~----------~~~yy~klP~~~~~~~VillDPmlATG~s 151 (221)
T 1o5o_A 85 VVVPILRAGLVMADGILELLPNASVGHIGIYRDP---ETLQ----------AVEYYAKLPPLNDDKEVFLLDPMLATGVS 151 (221)
T ss_dssp EEEEEETTHHHHHHHHHHHSTTCEECEEEEEECT---TTCC----------EEEEEEECCCCCTTCEEEEECSEESSSHH
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECC---CCCC----------CEEEEEECCCCCCCCEEEEEHHHHHCCHH
T ss_conf 8988405664077899997787641378887358---8888----------18750107866346728987788647712
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 88899999853997899996
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri 392 (488)
+-..++.|++.|+++|++..
T Consensus 152 ~~~ai~~L~~~G~~~I~~v~ 171 (221)
T 1o5o_A 152 SIKAIEILKENGAKKITLVA 171 (221)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEEE
T ss_conf 99999999865997089999
No 59
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=89.49 E-value=0.13 Score=29.84 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=41.2
Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCE--EEEE--ECCCC
Q ss_conf 13432455338932897403533333888999998539978--9999--65898
Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASE--VHLR--VASPM 396 (488)
Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~e--vh~r--i~sPp 396 (488)
-|+-+++.+.++.|+|+|.=+-.|.|+-..++.|++.|+++ |++. ++||+
T Consensus 146 yy~klP~~i~~~~Vll~DPMLATG~S~~~ai~~L~~~Gv~~~~I~~vsvias~~ 199 (243)
T 1bd3_D 146 IYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQ 199 (243)
T ss_dssp EEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHHTCCGGGEEEEEEEECHH
T ss_pred EHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEECHH
T ss_conf 142284211014589868055057229999999997199854079999986589
No 60
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1
Probab=87.99 E-value=0.29 Score=27.32 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=40.3
Q ss_pred CCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 1343245533893289740353333388899999853997899996
Q gi|254780336|r 347 KHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 347 K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
-++-+++.+.++.|+|.|.=+-.|.|+-..++.|++.|++.|++.+
T Consensus 113 ~~~klP~~i~~~~vil~DPmlATG~s~~~ai~~Lk~~g~~~I~~v~ 158 (208)
T 1v9s_A 113 YYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMA 158 (208)
T ss_dssp EEEECCSCGGGSCEEEECSEESSSHHHHHHHHHHHHTTCCSCEEEE
T ss_pred EEEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9997376513577999683663437799999999865998469999
No 61
>2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus}
Probab=86.46 E-value=0.31 Score=27.09 Aligned_cols=104 Identities=23% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHH---HHHHHHHHHHCCCC---------------------CC--CCCCCCCCHHHHHHHHHHHC-CCCEEHHEE-CC
Q ss_conf 99999---99999998748656---------------------77--20120012047799999981-996001001-17
Q gi|254780336|r 274 IYVSR---RNMGKNLAKESPVI---------------------AD--IVVPIPDGGVPAAIGYAKES-GIPFEQGII-RN 325 (488)
Q Consensus 274 Vy~~R---~~lG~~La~~~~~~---------------------~D--iV~~VPdsg~~aA~gya~~~-gip~~~~lv-kn 325 (488)
..++| .++|+.|+.|.--+ .+ +++++--+|.+-..|+.+.. ..+.....+ +|
T Consensus 24 ~~~Fr~~~~rl~~~L~~Eal~~l~~~~~~V~Tp~g~~~~~~~~~~~i~~V~ILRaGl~m~~~~~~~~P~a~ig~i~i~rd 103 (208)
T 2e55_A 24 AEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRN 103 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEETTEEEEEEECCGGGEEEEEEETTTHHHHHHHHHHSTTCEECEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 78999999999999999998178752359778993387665236645899982455317777997488873468762257
Q ss_pred CCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 653210110644677765320134324553389328974035333338889999985399789999
Q gi|254780336|r 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 326 ~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
. .|+ ....-++-+++ +.++.|+|+|-=+=.|.|+...++.|++.|++.|.+.
T Consensus 104 ~---~t~----------~p~~yy~klP~-~~~~~vlllDPmlATG~s~~~ai~~L~~~g~~~I~~v 155 (208)
T 2e55_A 104 E---ETL----------ESHIYYSRLPE-LKGKIVVILDPMLATGGTLEVALREILKHSPLKVKSV 155 (208)
T ss_dssp T---TTC----------CEEEEEEECCC-CBTSEEEEECSEESSSHHHHHHHHHHHTTCBSEEEEE
T ss_pred C---CCC----------CCEEHHHHHHH-HCCCCEEEECHHHCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 7---678----------71233554553-0357069834676157159999999984488617999
No 62
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, protein structure initiative NDRT; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=86.17 E-value=0.8 Score=24.20 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCCCCC--------CCCCHHHHHHHHHHHCCCCEEH
Q ss_conf 772012--------0012047799999981996001
Q gi|254780336|r 293 ADIVVP--------IPDGGVPAAIGYAKESGIPFEQ 320 (488)
Q Consensus 293 ~DiV~~--------VPdsg~~aA~gya~~~gip~~~ 320 (488)
+|+|+. -||+|...-+|||.++|+|.--
T Consensus 68 ~D~via~Ld~f~g~~~D~GT~~EiG~A~algKPVv~ 103 (161)
T 2f62_A 68 CDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLT 103 (161)
T ss_dssp CSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 999999923777999998889999999987995999
No 63
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=84.36 E-value=1.6 Score=21.97 Aligned_cols=28 Identities=39% Similarity=0.631 Sum_probs=22.8
Q ss_pred CCCCCCC-----CCCCHHHHHHHHHHHCCCCEE
Q ss_conf 6772012-----001204779999998199600
Q gi|254780336|r 292 IADIVVP-----IPDGGVPAAIGYAKESGIPFE 319 (488)
Q Consensus 292 ~~DiV~~-----VPdsg~~aA~gya~~~gip~~ 319 (488)
++|+|+. .||+|..+-+|||.++|+|.-
T Consensus 69 ~aD~via~ldg~~~D~GT~~EiG~A~algkpvi 101 (162)
T 3ehd_A 69 ASDLLVALLDGPTIDAGVASEIGVAYAKGIPVV 101 (162)
T ss_dssp TCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEE
T ss_pred HCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 699999984899999888999999998699599
No 64
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=82.77 E-value=1.3 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=23.8
Q ss_pred CCCCCCC-----CCCCHHHHHHHHHHHCCCCEEH
Q ss_conf 6772012-----0012047799999981996001
Q gi|254780336|r 292 IADIVVP-----IPDGGVPAAIGYAKESGIPFEQ 320 (488)
Q Consensus 292 ~~DiV~~-----VPdsg~~aA~gya~~~gip~~~ 320 (488)
++|+|+. .||+|...-+|||-++|+|.--
T Consensus 81 ~~D~viA~ldg~~~D~GTa~ElG~A~algKPvv~ 114 (167)
T 1s2d_A 81 NATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVIL 114 (167)
T ss_dssp HCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEE
T ss_pred HCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 6999999958998983189999999986994899
No 65
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=82.11 E-value=1.5 Score=22.27 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=24.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 53389328974035333338889999985399789999
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
.++|+||++|||+- ++.+.+.++|+..|. +|...
T Consensus 4 ~~~g~rILvVDD~~---~~~~~l~~~L~~~g~-~v~~a 37 (136)
T 1dcf_A 4 NFTGLKVLVMDENG---VSRMVTKGLLVHLGC-EVTTV 37 (136)
T ss_dssp CCTTCEEEEECSCH---HHHHHHHHHHHHTTC-EEEEE
T ss_pred CCCCCEEEEEECCH---HHHHHHHHHHHHCCC-EEEEE
T ss_conf 89999999993989---999999999998799-99998
No 66
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=80.77 E-value=1.6 Score=22.10 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=37.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|++--|+|-|...++++||.+....|++.+...|
T Consensus 63 L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~~~V~L~v~r~p 105 (108)
T 2d92_A 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9969999999999988998999999996289986999999489
No 67
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=79.67 E-value=0.91 Score=23.81 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=39.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 533893289740353333388899999853997899996589805
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
+-.|.+|+=|++.-|++.|...++++||.++-..|.+.+..|+=.
T Consensus 54 L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~~v~l~v~~~~~~ 98 (111)
T 1vae_A 54 AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDS 98 (111)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 988999999999998999899999998768998689999787788
No 68
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=77.78 E-value=1.8 Score=21.72 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=38.2
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+=|++--|+|.|...++++||.++...|.+.+-+|.
T Consensus 62 L~~GD~Il~INg~~v~~~t~~evv~~lr~~~~~~v~L~Vv~~~ 104 (109)
T 2vsv_A 62 AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 8999999999999989998999999987789974899997877
No 69
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=76.98 E-value=3 Score=20.07 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=35.7
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEE-CCCCC
Q ss_conf 5338932897403533333888999998539-97899996-58980
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRV-ASPMV 397 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri-~sPpi 397 (488)
+-.|.+|+=|++--|+|-|...++++||++. ...|.+++ -+|||
T Consensus 56 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~l~v~~~pPv 101 (101)
T 2yt7_A 56 LSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPPV 101 (101)
T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 9879999999999988998999999997499999899999838999
No 70
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.37 E-value=3.5 Score=19.63 Aligned_cols=41 Identities=29% Similarity=0.528 Sum_probs=36.4
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 338932897403533333888999998539978999965898
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-.|.+|+-|++-=|++.|...++++|++++. +|.+.+.-|+
T Consensus 58 ~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~-~v~L~v~r~~ 98 (104)
T 2djt_A 58 EVGDLVLHINGESTQGLTHAQAVERIRAGGP-QLHLVIRRPL 98 (104)
T ss_dssp CTTCBEEEETTEECTTCCHHHHHHHHHHTCS-EEEEEECCCC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCC
T ss_conf 9999999999999889989999999975899-7999998699
No 71
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=73.88 E-value=3 Score=20.15 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=52.9
Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCEE-HHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHH-HCCCCEEEEEHHHHHHH
Q ss_conf 201200120477999999819-9600-10011765321011064467776532013432455-33893289740353333
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESG-IPFE-QGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTI-LAGKRVVLIDDSIVRGT 371 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~g-ip~~-~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~-i~gk~vvlvDDSIVRGt 371 (488)
+++++--+|.+-..|+.+-+- .+.. -++.+|.-.+.. .| .......=|+-+++. -+...|+|.|.=+-.|.
T Consensus 74 ~~V~ILRAGl~m~~~~~~~~p~a~~g~ig~~r~e~~~~~--~~----~t~~~~~yy~klP~~~~~~~~villDPmlATG~ 147 (216)
T 1xtt_A 74 VIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKE--VP----KDMDVYIYYKKIPDIRAKVDNVIIADPMIATAS 147 (216)
T ss_dssp EEEEEETTTHHHHHHHHHHCTTCEEEEEEEEECCCCCSS--CC----SCCCEEEEEEECCCCCTTTCEEEEECSEESSSH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCC--CC----CCCCEEEEECCCCCCCCCCCEEEEECHHHHCHH
T ss_conf 897310010237888997189974556666860356767--86----665606540008674234533897274775418
Q ss_pred HHHHHHHHHHHCCCCEEEEE
Q ss_conf 38889999985399789999
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~r 391 (488)
|+-..++.|++.|+++|++.
T Consensus 148 s~~~ai~~L~~~g~~~I~~v 167 (216)
T 1xtt_A 148 TMLKVLEEVVKANPKRIYIV 167 (216)
T ss_dssp HHHHHHHHHGGGCCSEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 89999999874599538999
No 72
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.88 E-value=4 Score=19.21 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=36.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|++--|++.|...++++||+++ .+|.+.+...|
T Consensus 49 l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~L~v~r~P 90 (93)
T 2dkr_A 49 LKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSGP 90 (93)
T ss_dssp CCTTCBEEEETTEECTTSCHHHHHHHHHHCC-SEEEEEECCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC
T ss_conf 9989999999999989998999999998299-92999999089
No 73
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=70.51 E-value=4.9 Score=18.56 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHCCCCEEHHEECCCCCC----CEEEE--------C-C---HHHHHHHHHHCCCCCHHHHCCCCEEEE
Q ss_conf 012047799999981996001001176532----10110--------6-4---467776532013432455338932897
Q gi|254780336|r 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVG----RTFIE--------P-S---HHIRAFGVKLKHSANRTILAGKRVVLI 363 (488)
Q Consensus 300 Pdsg~~aA~gya~~~gip~~~~lvkn~y~g----RtFI~--------p-~---~~~R~~~v~~K~~~~~~~i~gk~vvlv 363 (488)
|.+|..+|.-+.+..|+||... ...+| +.|+. + . .++|.+... .+.-.+..+.||++.+.
T Consensus 243 ~~~~~~~A~~L~~~~GiPyi~~---~~p~G~~~t~~~l~~l~~~~G~~~~~~i~~er~~~~~-~~~~~~~~l~gkrv~I~ 318 (458)
T 1mio_B 243 SYASDLGAKTLEKKCKVPFKTL---RTPIGVSATDEFIMALSEATGKEVPASIEEERGQLID-LMIDAQQYLQGKKVALL 318 (458)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEE---CCCBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEC---CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCEEEEE
T ss_conf 5565789999999869987855---8876878999999999999689817878876999999-99999997289889998
Q ss_pred EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 403533333888999998539978999965898
Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-|+ +..-.+.+.|++.|..-+.+...+++
T Consensus 319 ~~~----~~~~~l~~~L~elG~~~~~~~~~~~~ 347 (458)
T 1mio_B 319 GDP----DEIIALSKFIIELGAIPKYVVTGTPG 347 (458)
T ss_dssp ECH----HHHHHHHHHHHTTTCEEEEEEESSCC
T ss_pred CCC----HHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 982----88999999999839900389837898
No 74
>1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe}
Probab=70.44 E-value=4.9 Score=18.55 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=16.5
Q ss_pred CEEEEEEEEEECCH--HHHHHHHHHCCCCC
Q ss_conf 71999996550878--99999998649824
Q gi|254780336|r 109 GGIAIAHNGNFTNG--LTLRKKLISSGAIF 136 (488)
Q Consensus 109 g~iaiaHNGnI~N~--~eLr~~L~~~g~~f 136 (488)
.+.-|+...++.+. +.+.+.|.+.|..+
T Consensus 92 kr~LIVtd~~~~~~~~~~v~~~L~~~gi~v 121 (450)
T 1ta9_A 92 KSAVVLADQNVWNICANKIVDSLSQNGMTV 121 (450)
T ss_dssp SEEEEEEEHHHHHHTHHHHHHHHHHTTCEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 969999892488999999999998769979
No 75
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.01 E-value=3.9 Score=19.31 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|++--|.+-|...++++||+++ .+|.+.+...|
T Consensus 50 L~~GD~Il~VNg~~v~~~s~~evv~ll~~~~-~~v~L~V~r~p 91 (94)
T 2eeg_A 50 LCPGDLIQAINGESTELMTHLEAQNRIKGCH-DHLTLSVSSGP 91 (94)
T ss_dssp CCTTCEEEEETTEETTTCCHHHHHHHHHTCC-SCEEEEEECCS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC
T ss_conf 9999999989999999998999999997699-84999999289
No 76
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=69.25 E-value=3.9 Score=19.27 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=34.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|++--|+|-|...++++||+++ .+|.+.+.-+|
T Consensus 57 L~~GD~Il~INg~~v~~~~~~~v~~llk~~~-~~v~l~v~r~~ 98 (111)
T 2dlu_A 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLVARDP 98 (111)
T ss_dssp CCSSCEEEEESSCCCTTSCHHHHHHHHHHHC-SEEEEEEEESC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC
T ss_conf 8689999999999978998999999997599-85999999799
No 77
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=69.12 E-value=1.8 Score=21.75 Aligned_cols=31 Identities=19% Similarity=0.560 Sum_probs=22.5
Q ss_pred HHHHH-HCCEEEEEEECCEEEEEEECCCCCEEE
Q ss_conf 99865-304399996399799998256654159
Q gi|254780336|r 164 SLRHV-QGAYAMLALTRTKLIATRDPIGIRPLI 195 (488)
Q Consensus 164 ~l~~l-~Gayslv~l~~~~l~~~RDp~GiRPL~ 195 (488)
+++.+ .+.||++++.++.++.+.+ .|+|||+
T Consensus 21 a~~LL~e~~~S~vv~~g~~i~ts~~-rGvkpL~ 52 (151)
T 1vk9_A 21 ALKIFEKKDLSLLAYSGRSIFESKD-SGLKPVV 52 (151)
T ss_dssp HHHHHHHTTCSEEEESSSEEEEECC-STTHHHH
T ss_pred HHHHHHHCCEEEEEECCCEEEEECC-CCHHHHH
T ss_conf 9999971883799965999986368-6827999
No 78
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.91 E-value=3.9 Score=19.29 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=36.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 53389328974035333338889999985399789999658980
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
+-.|.+|+-||+--|++.|...++++||.++ .+|.+.+.-|+.
T Consensus 50 L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~l~v~~~~~ 92 (106)
T 2eei_A 50 VLADDHLIEVNGENVEDASHEEVVEKVKKSG-SRVMFLLVDKET 92 (106)
T ss_dssp CCSSEEEEEETTEECTTCCHHHHHHHHHHHC-SEEEEEECCTTT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCCC
T ss_conf 9889999999999999999999999997699-969999987897
No 79
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=67.94 E-value=5.1 Score=18.49 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=34.2
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+=|++--|++-|...++++||+++ .+|++.+.-++
T Consensus 55 L~~GD~Il~INg~~v~~~~~~ev~~~lk~~~-~~v~l~v~r~~ 96 (110)
T 1um1_A 55 LSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRFLVAKSD 96 (110)
T ss_dssp CCTTCEEEEESSCBCSSCCHHHHHHHHHTCC-SEEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC
T ss_conf 9999999999999978998999999998299-96999999399
No 80
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=65.34 E-value=6.2 Score=17.86 Aligned_cols=41 Identities=24% Similarity=0.507 Sum_probs=33.7
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+-|++--|++-|...++++||+++. +|++.+.-+
T Consensus 62 L~~GD~Il~INg~~v~~~~~~~v~~llr~~~~-~v~L~v~r~ 102 (114)
T 1uew_A 62 LKVGDRILAVNGQSIINMPHADIVKLIKDAGL-SVTLRIIPQ 102 (114)
T ss_dssp CCTTCBEEEETTBCTTTSCHHHHHHHHHHTTT-EEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEEC
T ss_conf 99999999999999889979999999977998-499999958
No 81
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=65.03 E-value=4.9 Score=18.60 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=36.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 53389328974035333338889999985399789999658980
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
+-.|.+|+-||+--|++.|...++++|+.++. .+.+.+..|+.
T Consensus 45 l~~GD~Il~VnG~~v~~~~~~ev~~~l~~~~~-~v~L~V~~~~~ 87 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGK-NVTLLVCGKKA 87 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTSCS-EEEEEEEC---
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCCC
T ss_conf 99999999999999999989999999975999-69999989887
No 82
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei}
Probab=64.77 E-value=2.1 Score=21.22 Aligned_cols=82 Identities=17% Similarity=0.300 Sum_probs=50.5
Q ss_pred CCCCCCCCHHHHHHHHHHHC-CCCEEH-HEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 20120012047799999981-996001-0011765321011064467776532013432455338932897403533333
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKES-GIPFEQ-GIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTT 372 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~-gip~~~-~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT 372 (488)
+++++--+|.+-..|+.+-+ ..+... ++-+|. .| +|. .-.+. .+ .++++.|+|+|.=+--|.|
T Consensus 80 ~~V~IlRAGl~m~~~~~~~~p~a~~g~i~i~r~~---~t--~~~-------~y~~~--~p-~~~~~~villDPmlATG~s 144 (217)
T 3dmp_A 80 AIVPVLRAGVGMSDGLLELIPSARVGHIGVYRAD---DH--RPV-------EYLVR--LP-DLEDRIFILCDPMVATGYS 144 (217)
T ss_dssp EEEEEETTTHHHHHHHHHHCTTSEECEEECSCCC---SS--SCC-------CSEEE--CC-CCTTCEEEEECSEESSSHH
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCC---CC--CCH-------HHHHC--CC-CCCCCEEEEEECCCCCCHH
T ss_conf 9988613542478889986777520057401257---88--630-------07650--87-7344609999440257757
Q ss_pred HHHHHHHHHHCCCC--EEEEE
Q ss_conf 88899999853997--89999
Q gi|254780336|r 373 SVKIVQMIRSAGAS--EVHLR 391 (488)
Q Consensus 373 ~k~iv~~lr~aGa~--evh~r 391 (488)
+-..++.|++.|++ .|++.
T Consensus 145 ~~~ai~~L~~~Gv~~~~I~~v 165 (217)
T 3dmp_A 145 AAHAIDVLKRRGVPGERLMFL 165 (217)
T ss_dssp HHHHHHHHHTTTCCGGGEEEE
T ss_pred HHHHHHHHHHCCCCCCEEEEE
T ss_conf 999999999849984528999
No 83
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=64.39 E-value=6.2 Score=17.84 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=33.6
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 33893289740353333388899999853997899996589
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
-.|.+|+-|++--|+|.|...++++||.++ .+|.+.+.-|
T Consensus 53 ~~GD~Il~VNg~~v~~~~~~e~~~~lr~~~-~~v~L~v~R~ 92 (94)
T 2fe5_A 53 QIGDRLLAVNNTNLQDVRHEEAVASLKNTS-DMVYLKVAKP 92 (94)
T ss_dssp CTTCEEEEETTEECTTCBHHHHHHHHHTCC-SEEEEEEECC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC
T ss_conf 999999999999988998999999997399-9699999899
No 84
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A
Probab=64.33 E-value=6.3 Score=17.81 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=36.5
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 3389328974035333338889999985399789999658980588
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
-.|.+|+=|++--|+|.|...++++||+++ ..|.+.+.-|-=.|-
T Consensus 53 ~~GD~Il~VNg~~v~~~t~~eav~~lr~~~-~~v~L~V~R~~~~~~ 97 (105)
T 2awx_A 53 QIGDKLLAVNSVSLEEVTHEEAVTALKNTS-DFVYLKVAKPTSMYI 97 (105)
T ss_dssp CTTCEEEEETTEECTTCBHHHHHHHHHSCC-SEEEEEEECCCC---
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCCCCCC
T ss_conf 889999999999978997999999998189-969999988877401
No 85
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=64.00 E-value=4.7 Score=18.73 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=35.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|++--|+|-|...++++||+++. .|++.+.-++
T Consensus 61 l~~GD~Il~INg~~v~~~~~~~~v~~lk~~~~-~v~L~v~R~~ 102 (108)
T 1q7x_A 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ-VVHLLLEKGQ 102 (108)
T ss_dssp CCSSCEEEEETTEECBSCTTSHHHHHHHHTTS-EEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC
T ss_conf 98999999999999889989999999876998-6999999898
No 86
>1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 1g20_A* 1g21_A* 3k1a_A* 1fp4_A* 1qgu_A* 1qh1_A* 1qh8_A* 1h1l_A*
Probab=63.49 E-value=6.7 Score=17.62 Aligned_cols=89 Identities=20% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC------------CEEEE--CCHH-----HHHHHHHHCCCCCHHHH
Q ss_conf 20120012047799999981996001001176532------------10110--6446-----77765320134324553
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG------------RTFIE--PSHH-----IRAFGVKLKHSANRTIL 355 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g------------RtFI~--p~~~-----~R~~~v~~K~~~~~~~i 355 (488)
+|. -|.++..+|.-+.+.-|+||-.. + ++| +-|=. |.+. .....+.-.+...+..+
T Consensus 271 iv~-~~~~~~~~A~~Lee~~GiP~i~~---~-~~G~~~T~~~Lr~ia~~~g~~~~~~~E~~Ia~e~~~~~~~l~~~~~~L 345 (491)
T 1m1n_A 271 LVH-CYRSMNYISRHMEEKYGIPWMEY---N-FFGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRL 345 (491)
T ss_dssp EES-CHHHHHHHHHHHHHHHCCCEEEC---C-CSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-CHHHHHHHHHHHHHHHCCCEEEC---C-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 985-77899999999999759863302---3-587378999999999985872467899999999999999999999986
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3893289740353333388899999853997899996
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+||++++.-| |...-.++++|++.|.+=|.+..
T Consensus 346 ~GKrv~i~~g----~~~~~~l~~~l~ElGmevv~~~~ 378 (491)
T 1m1n_A 346 EGKRVMLYIG----GLRPRHVIGAYEDLGMEVVGTGY 378 (491)
T ss_dssp TTCEEEECBS----SSHHHHTHHHHHTTTCEEEEEEE
T ss_pred CCCEEEEECC----CCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 7971899678----60079999999986997999960
No 87
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=63.16 E-value=6.8 Score=17.58 Aligned_cols=39 Identities=28% Similarity=0.561 Sum_probs=32.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|+|.|...++++||.++-. |.+.+.
T Consensus 65 L~~GD~Il~VNg~~v~~~~~~e~v~~lr~~~~~-v~L~v~ 103 (129)
T 2dmz_A 65 IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQV-VHLTLV 103 (129)
T ss_dssp CCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSS-EEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEE
T ss_conf 998999999999998899899999999738995-999999
No 88
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=62.64 E-value=3.6 Score=19.56 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=23.5
Q ss_pred CCCCCC-----CCCCCHHHHHHHHHHHCCCCEEH
Q ss_conf 677201-----20012047799999981996001
Q gi|254780336|r 292 IADIVV-----PIPDGGVPAAIGYAKESGIPFEQ 320 (488)
Q Consensus 292 ~~DiV~-----~VPdsg~~aA~gya~~~gip~~~ 320 (488)
.+|+|+ ..||+|...-+|||.++|+|.--
T Consensus 78 ~aD~vva~l~~~~~d~Gt~~E~G~A~a~~kpvi~ 111 (157)
T 1f8y_A 78 TNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLL 111 (157)
T ss_dssp TSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEE
T ss_pred HCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 6899999958987986679999999987996899
No 89
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=62.35 E-value=5.6 Score=18.15 Aligned_cols=35 Identities=17% Similarity=0.035 Sum_probs=29.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 53389328974035333338889999985399789999
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
.-+++.||++++| |..+....+.|++.|-+.|++.
T Consensus 55 ~~~~~~ii~~c~~---g~~s~~~a~~l~~~G~~~v~~l 89 (108)
T 1gmx_A 55 NDFDTPVMVMCYH---GNSSKGAAQYLLQQGYDVVYSI 89 (108)
T ss_dssp SCTTSCEEEECSS---SSHHHHHHHHHHHHTCSSEEEE
T ss_pred HHCCCCEEEECCC---CHHHHHHHHHHHHCCCCCEEEE
T ss_conf 3246870478899---8589999999998499577985
No 90
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=62.09 E-value=6.8 Score=17.59 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=27.9
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 389328974035333338889999985399789999
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
+++.||+++.+ |+++...+++|++.|-+.|.+.
T Consensus 55 ~~~~ivvyC~~---g~rs~~aa~~L~~~G~~~V~~l 87 (141)
T 3ilm_A 55 KSRDIYVYGAG---DEQTSQAVNLLRSAGFEHVSEL 87 (141)
T ss_dssp TTSEEEEECSS---HHHHHHHHHHHHHTTCCSEEEC
T ss_pred CCCCEEEECCC---CHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88867998999---7589999999997497477995
No 91
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, alternative splicing; 1.5A {Homo sapiens}
Probab=61.86 E-value=5.7 Score=18.13 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=35.7
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 33893289740353333388899999853997899996589805
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
-.|..|+-|++.-|+|-|...++++||.++ .+|++.+.-||=.
T Consensus 52 ~~GD~Il~INg~~v~~~~~~e~~~~l~~~~-~~v~L~v~r~~~~ 94 (97)
T 2jil_A 52 KPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEAALLIEYDVSE 94 (97)
T ss_dssp CTTCEEEEETTEECSSCCHHHHHHHHHHSC-SEEEEEEEEECCC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC
T ss_conf 899999999999978998999999998299-9699999978978
No 92
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=61.66 E-value=7.2 Score=17.40 Aligned_cols=42 Identities=17% Similarity=0.387 Sum_probs=36.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+=|++--|++.+...++++||.++ ..|++.+.-|+
T Consensus 48 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~V~R~~ 89 (92)
T 2qg1_A 48 LMQGDQILMVNGEDVRNATQEAVAALLKCSL-GTVTLEVGRIS 89 (92)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC
T ss_conf 9999999999999978999999999997799-96999999068
No 93
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.35 E-value=3.8 Score=19.35 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=33.2
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 33893289740353333388899999853997899996589
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
-.|.+|+-|++--|++-|...++++||+++ .+|.+.+..+
T Consensus 67 ~~GD~Il~VNg~~v~~~~~~e~~~~ik~~~-~~v~L~v~r~ 106 (120)
T 2eno_A 67 QEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHR 106 (120)
T ss_dssp CTTCEEEEETTEECCSCCHHHHHHHHHHHC-SEEEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 999999999999988997999999997389-8599999978
No 94
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=60.91 E-value=6.9 Score=17.53 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=29.9
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 338932897403533333888999998539978999965898
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-.|.+|+-|++--|+|-|...++++||+++- .|.+.+..|+
T Consensus 73 ~~GD~Il~VNg~~v~~~t~~evv~ll~~~~~-~v~L~V~r~~ 113 (117)
T 2fne_A 73 KRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVLSSD 113 (117)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEEECS
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-CEEEEEECCC
T ss_conf 8899999999999889989999999974999-0899998489
No 95
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=60.43 E-value=5.5 Score=18.23 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=34.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC----CCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539----978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG----ASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG----a~evh~ri~sPp 396 (488)
+-.|.+|+=|++--|+|-|...++++||+++ ...|.+.+..|.
T Consensus 51 L~~GD~Il~INg~~v~~~s~~e~~~ll~~a~~~~~~~~v~l~v~~~~ 97 (103)
T 1ufx_A 51 LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97 (103)
T ss_dssp SCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 98899999999999889979999999998647787767999997999
No 96
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=60.38 E-value=6.9 Score=17.52 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=34.0
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 338932897403533333888999998539978999965898
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-.|.+|+=|++--|++.|...++++||.++ .+|.+.+..+.
T Consensus 70 ~~GD~Il~VNg~~v~~~t~~evv~~ir~~~-~~v~l~V~~~~ 110 (117)
T 2ehr_A 70 KTGDKILEVSGVDLQNASHSEAVEAIKNAG-NPVVFIVQSLS 110 (117)
T ss_dssp CTTCEEEEESSCBCTTCCHHHHHHHHHTSC-SSEEEEECCBS
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC
T ss_conf 889999999999977998999999998699-84999999899
No 97
>1x45_A Amyloid beta (A4) precursor protein-binding, family A, member 1 (X11); PDZ domain, neuron-specific XII protein, adapter protein XII alpha; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=60.34 E-value=7.6 Score=17.24 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=35.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539-978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~sPp 396 (488)
+-.|..|+-|++--|++-|...++++|+.+. ...+.+.+...|
T Consensus 52 l~~GD~Il~INg~~v~~~t~~~~~~~l~~~~~~~~v~l~i~~~P 95 (98)
T 1x45_A 52 LNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVSGP 95 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 99999999999999889989999999973999848999996699
No 98
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Helicobacter pylori 26695}
Probab=59.38 E-value=7.8 Score=17.13 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.5
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3389328974035333338889999985399789999
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
-++|.|+++.+| |..+....+.|++.|-+.|++.
T Consensus 54 ~k~~~iiv~C~s---G~rS~~a~~~L~~~G~~~v~l~ 87 (110)
T 2k0z_A 54 HKDKKVLLHCRA---GRRALDAAKSMHELGYTPYYLE 87 (110)
T ss_dssp CSSSCEEEECSS---SHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCEEEECCC---CHHHHHHHHHHHHCCCCEEEEC
T ss_conf 799868998899---8489999999998599879956
No 99
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genomics consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=59.12 E-value=5.6 Score=18.16 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=30.5
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 3389328974035333338889999985399789999658980
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
-.|.+|+-|++--|+|-|...++++||+++ .+|.+.+.=|.-
T Consensus 74 ~~GD~Il~VNg~~v~~~s~~e~v~llr~~~-~~v~L~V~Rp~t 115 (117)
T 2byg_A 74 QVGDRLLMVNNYSLEEVTHEEAVAILKNTS-EVVYLKVGKPTT 115 (117)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCCC
T ss_conf 889999999999988998999999997289-969999957777
No 100
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=58.65 E-value=6.7 Score=17.61 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=34.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+=|++--|+|.|...++++||+++ ..|++.+.-|
T Consensus 48 L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~-~~v~l~v~R~ 88 (95)
T 2vwr_A 48 LSSNDRVLAINGHDLKYGTPELAAQIIQASG-ERVNLTIARP 88 (95)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC
T ss_conf 9999999999999946899999999997499-9699999839
No 101
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=57.48 E-value=8.4 Score=16.91 Aligned_cols=41 Identities=22% Similarity=0.484 Sum_probs=34.2
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 338932897403533333888999998539978999965898
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-.|.+|+-||+-=|+|.|...++++||+++ .+|.+.+.-+.
T Consensus 50 ~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~~v~L~v~r~~ 90 (97)
T 1n7e_A 50 HIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQT 90 (97)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEECCC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC
T ss_conf 989999999999978998999999997599-85999998899
No 102
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=57.41 E-value=8.4 Score=16.91 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=34.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|..|+-|++--|++-|...++++||.++ .+|.+++.-+
T Consensus 54 L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~-~~v~l~v~R~ 94 (100)
T 1whd_A 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRV 94 (100)
T ss_dssp CCSSCEEEEETTEECTTCCHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 9999999999999999999999999976799-9799999989
No 103
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=57.20 E-value=7.6 Score=17.22 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=33.2
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|..|+=|++--|+|.|...++++||.+| ..|.+.+..|
T Consensus 51 L~~GD~Il~INg~~v~~~s~~~v~~lik~~~-~~v~l~V~~~ 91 (98)
T 2jxo_A 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91 (98)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEECCH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC
T ss_conf 9999999999999988999999999987799-9799999888
No 104
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=57.13 E-value=8.2 Score=17.01 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=19.0
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3893289740353333388899999853997
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488)
+..+|++|||+-+ +...+-++|.+.|.+
T Consensus 123 ~~~~VLvVDD~~~---~~~~i~~~L~~~g~~ 150 (259)
T 3luf_A 123 QQIEVLVVDDSRT---SRHRTMAQLRKQLLQ 150 (259)
T ss_dssp TTCEEEEECSCHH---HHHHHHHHHHTTTCE
T ss_pred CCCEEEEECCCHH---HHHHHHHHHHHCCCC
T ss_conf 7625787538889---999999999834662
No 105
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=57.13 E-value=8.5 Score=16.88 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=18.8
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 3389328974035333338889999985399789
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ev 388 (488)
+.||+|++|||+-. ..+.+...|.+.|..-.
T Consensus 5 l~g~kILiVDD~~~---~r~~l~~~L~~~g~~v~ 35 (130)
T 3eod_A 5 LVGKQILIVEDEQV---FRSLLDSWFSSLGATTV 35 (130)
T ss_dssp TTTCEEEEECSCHH---HHHHHHHHHHHTTCEEE
T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHCCCEEE
T ss_conf 89998999969899---99999999998899999
No 106
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=56.08 E-value=7.7 Score=17.18 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=31.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 53389328974035333338889999985399789999658
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
+-.|.+|+-||+--|+|.|...++++||.+| ..|.+.+..
T Consensus 51 L~~GD~Il~VNg~~v~~~~~~e~v~~l~~~~-~~v~L~V~~ 90 (128)
T 2kjd_A 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVD 90 (128)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTC-SEEEEEEEC
T ss_pred CCCCCEEEEECCEEECCCCHHHHHHHHHCCC-CEEEEEEEC
T ss_conf 9989999997999967899999999997698-979999986
No 107
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; transferase, structural genomics, structural genomics consortium, SGC; HET: HIS; 2.05A {Homo sapiens}
Probab=55.88 E-value=8.9 Score=16.74 Aligned_cols=41 Identities=15% Similarity=0.369 Sum_probs=30.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+-|++--|+|.|...++++||.++ ..|.+.+.-|
T Consensus 68 L~~GD~Il~VNg~~v~~~t~~evv~llk~~~-~~v~L~v~R~ 108 (112)
T 2r4h_A 68 MRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRG 108 (112)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 9999999989999999997999999987699-8399999969
No 108
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=55.82 E-value=8.9 Score=16.73 Aligned_cols=42 Identities=29% Similarity=0.475 Sum_probs=35.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|++--|+|.|...++++||+++ ..|.+.+.-++
T Consensus 52 l~~GD~Il~INg~~v~~~~~~e~v~~l~~~~-~~v~L~v~R~~ 93 (96)
T 1d5g_A 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQ 93 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEECCS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC
T ss_conf 9999999999999988998999999987799-86999998389
No 109
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=55.80 E-value=5.5 Score=18.24 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=16.5
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 33893289740353333388899999853997
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488)
++||+|++|||+-.- .+.+.++|++.|..
T Consensus 3 lk~~rILiVDD~~~~---~~~l~~~L~~~g~~ 31 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQ---AKTIANILNKYGYT 31 (140)
T ss_dssp ---CEEEEECSCHHH---HHHHHHHHHHTTCE
T ss_pred CCCCEEEEEECCHHH---HHHHHHHHHHCCCE
T ss_conf 899999999598999---99999999987999
No 110
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=55.43 E-value=7.1 Score=17.43 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=27.7
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 33893289740353333388899999853997899996589
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
-.|.+|+-|++--|.|-|...++++||+++ .+|.+.+.-+
T Consensus 57 ~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~-~~v~L~V~R~ 96 (101)
T 2jik_A 57 QEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHR 96 (101)
T ss_dssp CTTCEEEEETTEECSSCCHHHHHHHHHTCC-SEEEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 999999999999988998999999998399-9799999958
No 111
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesion; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A
Probab=54.99 E-value=8 Score=17.07 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=31.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|..|+-|++--|++.|...++++||+++ ..|++.+.-|
T Consensus 56 l~~GD~Il~INg~~v~~~s~~e~~~llr~~~-~~v~L~V~R~ 96 (107)
T 2h2b_A 56 LQENDRVAMVNGVSMDNVEHAFAVQQLRKSG-KNAKITIRRK 96 (107)
T ss_dssp BCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 9989999999999999998999999998289-9799999973
No 112
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
Probab=54.68 E-value=6.9 Score=17.51 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEE------EHHHHHHHHHHHHHHHHH
Q ss_conf 99999819960010011765321011064467776532013432455338932897------403533333888999998
Q gi|254780336|r 308 IGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLI------DDSIVRGTTSVKIVQMIR 381 (488)
Q Consensus 308 ~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlv------DDSIVRGtT~k~iv~~lr 381 (488)
..+|++.|.+....++ |+-+.-.+..+...+...+..+...+++|+|.+. |=+-+|+..+-.+++.|.
T Consensus 286 ~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ilGlafK~~t~d~R~S~~~~l~~~L~ 359 (467)
T 2q3e_A 286 VYLCEALNLPEVARYW------QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLM 359 (467)
T ss_dssp HHHHHHTTCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999873998035689------8765247789999999999983266689989999862068888765685899999999
Q ss_pred HCCCCEEEEEECCCCC
Q ss_conf 5399789999658980
Q gi|254780336|r 382 SAGASEVHLRVASPMV 397 (488)
Q Consensus 382 ~aGa~evh~ri~sPpi 397 (488)
+.|+ +| ++--|-+
T Consensus 360 ~~g~-~v--~~~DP~v 372 (467)
T 2q3e_A 360 DEGA-HL--HIYDPKV 372 (467)
T ss_dssp HTTC-EE--EEECSSS
T ss_pred HCCC-EE--EEECCCC
T ss_conf 7799-89--9989988
No 113
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=54.60 E-value=7.6 Score=17.22 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=33.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+-|++-=|.|-|...++++||+++ ..|++.+.-|
T Consensus 63 L~~GD~Il~INg~~v~~~~~~evv~~lr~~~-~~v~l~V~r~ 103 (117)
T 2csj_A 63 LQENDRVVMVNGTPMEDVLHSFAVQQLRKSG-KIAAIVVKRP 103 (117)
T ss_dssp BCTTCEEEEESSCBCBTCCHHHHHHHHHHSC-SEEEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CEEEEEEEEC
T ss_conf 9999999999999998998999999998089-9699999978
No 114
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=54.46 E-value=9.4 Score=16.58 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=31.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|++--|++-|...++++||.++.-.+.|+..+.|
T Consensus 59 L~~GD~Il~VNg~~v~~~~~~ea~~llk~~~~v~l~V~~~~~P 101 (104)
T 1wi2_A 59 LQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFSGP 101 (104)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHSSSEEEEEECCCCS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 9999999999999999997999999986699389999978899
No 115
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A
Probab=54.23 E-value=9.4 Score=16.56 Aligned_cols=41 Identities=22% Similarity=0.446 Sum_probs=29.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|..|+=|++-=|.|.|...++++|+++| .+|.+.+..+
T Consensus 52 l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~g-~~v~L~v~~~ 92 (99)
T 3khf_A 52 LRAGDLITHINGESVLGLVHMDVVELLLKSG-NKISLRTTAL 92 (99)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEECS
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC
T ss_conf 3799999999998989999999999987698-9799999939
No 116
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=53.80 E-value=9.6 Score=16.51 Aligned_cols=41 Identities=29% Similarity=0.525 Sum_probs=33.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+=||+--|++.|...++++||.+| ..|.+.+-.|
T Consensus 56 l~~GD~Il~Ing~~v~~~~~~~~~~~lr~~~-~~v~l~v~~~ 96 (114)
T 2edz_A 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDG 96 (114)
T ss_dssp CCTTCEEEEESSSBCSSSCHHHHHHHHHHTC-SEEEEEEECH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 9889999999997742088999999987798-9899999969
No 117
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=53.49 E-value=9.7 Score=16.48 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=32.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|+|-|-..++++|++++ .+|.+++-
T Consensus 49 L~~GD~Il~INg~~v~~~t~~~~~~~l~~~~-~~v~L~v~ 87 (90)
T 1y7n_A 49 VRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTM 87 (90)
T ss_dssp CCSSCEEEEETTEECTTSCHHHHHHHHHHCC-EEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 9999999999999979998999999987599-97999997
No 118
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=52.90 E-value=9.9 Score=16.41 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=34.9
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 3389328974035333338889999985399789999658980
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
-.|.+|+=|++.=|+|-|...++++||.++-..|.+.+.-++.
T Consensus 77 ~~GD~Il~INg~~v~~~t~~e~v~~lr~~~~~~v~L~v~r~~~ 119 (130)
T 1i16_A 77 QPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119 (130)
T ss_dssp CTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 8789999999999889979999999971899759999974898
No 119
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=52.34 E-value=10 Score=16.35 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=12.8
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3389328974035333338889999985399
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488)
+...+|++|||+-. +.+.+.++|++.|.
T Consensus 8 ~~pl~VLiVDD~~~---~r~~l~~~L~~~g~ 35 (140)
T 3c97_A 8 IMPLSVLIAEDNDI---CRLVAAKALEKCTN 35 (140)
T ss_dssp --CCEEEEECCCHH---HHHHHHHHHTTTCS
T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHCCC
T ss_conf 99998999939899---99999999998799
No 120
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=52.10 E-value=8.7 Score=16.81 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=32.8
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE--EEECCCCC
Q ss_conf 33893289740353333388899999853997899--99658980
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH--LRVASPMV 397 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh--~ri~sPpi 397 (488)
-.|.+|+-|++--|+|.|...++++||+++. +|. |+-.+|.-
T Consensus 55 ~~GD~Il~VNG~~v~~~~~~e~v~llk~~~~-~v~l~V~~~~~e~ 98 (103)
T 2dc2_A 55 HVGDAILAVNGVNLRDTKHKEAVTILSQQRG-EIEFEVVYVALEH 98 (103)
T ss_dssp CSSEEEEEETTEESTTSCHHHHHHHHHHCCS-EEEEEEEECC---
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-CEEEEEEECCCCC
T ss_conf 8899999999999789989999999971899-0999999877433
No 121
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=51.82 E-value=10 Score=16.30 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+=|++--|++.|...++++||.++. .|.+.+.-|+
T Consensus 59 l~~GD~Il~INg~~v~~~s~~ev~~~i~~~~~-~v~l~v~r~~ 100 (107)
T 1wf8_A 59 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKG-NVRFVIGREK 100 (107)
T ss_dssp SCTTCBEEEETTEECBSCCHHHHHHHHHHCCS-EEEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC
T ss_conf 99999999999999889989999999876998-5999999799
No 122
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=51.44 E-value=10 Score=16.26 Aligned_cols=88 Identities=20% Similarity=0.249 Sum_probs=55.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCC------------CEEEECCHH--------HHHHHHHHCCCCCHHHHC
Q ss_conf 120012047799999981996001001176532------------101106446--------777653201343245533
Q gi|254780336|r 297 VPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVG------------RTFIEPSHH--------IRAFGVKLKHSANRTILA 356 (488)
Q Consensus 297 ~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~g------------RtFI~p~~~--------~R~~~v~~K~~~~~~~i~ 356 (488)
+--|.++..+|.-+-+.-|+||... + ++| +-|=.|... .....+.-.+...+..++
T Consensus 259 v~~~~~~~~~A~~Leer~GiP~~~~---~-p~G~~~T~~~Lr~ia~~~g~~~~~~~~e~~I~~e~~~~~~~l~~~~~~L~ 334 (533)
T 1mio_A 259 VQCHRSINYIAEMMETKYGIPWIKC---N-FIGVDGIVETLRDMAKCFDDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQ 334 (533)
T ss_dssp ESCHHHHHHHHHHHHHHHCCCEEEC---C-CSSHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECHHHHHHHHHHHHHHCCEEEEEC---C-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9565789999999998519556506---8-87814589999999998589606778999999999999999999999757
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 893289740353333388899999853997899996
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
||++.+.-| |...-.++++|++.|..=|.+..
T Consensus 335 GKrv~i~~~----~~~~~~l~~~l~elGmevv~~g~ 366 (533)
T 1mio_A 335 GKTACLYVG----GSRSHTYMNMLKSFGVDSLVAGF 366 (533)
T ss_dssp TCEEEEEES----SSHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCEEEEECC----CHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 974999767----26789999999986996999743
No 123
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus}
Probab=51.35 E-value=10 Score=16.25 Aligned_cols=41 Identities=29% Similarity=0.525 Sum_probs=33.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+-||+--|++.|...++++|+++| ..|.+.+-.+
T Consensus 44 L~~GD~I~~Ing~~v~~~~~~~~v~~l~~~~-~~v~l~V~~~ 84 (106)
T 3ngh_A 44 LLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDG 84 (106)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHHHTT-TEEEEEEECH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 9889999999999988999999999987699-9799999969
No 124
>3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396}
Probab=50.63 E-value=6.2 Score=17.88 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=17.7
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEE
Q ss_conf 33893289740353333388899999853997-8999
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHL 390 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ 390 (488)
++||||++|||+-.--. .+.++|.+.|.. +|..
T Consensus 3 l~~krILlVdD~~~~~~---~l~~~L~~~g~~~~v~~ 36 (144)
T 3kht_A 3 LRSKRVLVVEDNPDDIA---LIRRVLDRKDIHCQLEF 36 (144)
T ss_dssp --CEEEEEECCCHHHHH---HHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEECCHHHHH---HHHHHHHHCCCCEEEEE
T ss_conf 88998999958999999---99999996899829999
No 125
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=50.19 E-value=11 Score=16.12 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=37.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 533893289740353333388899999853997899996589805
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
+-.|.+|+-|++--|+|-|...++++||+++ ..|.+.|.-+|.-
T Consensus 64 L~~GD~Il~VNg~~v~~~t~~~~~~ll~~~~-~~v~L~V~r~~~~ 107 (118)
T 2yub_A 64 IHPGDRILEINGTPVRTLRVEEVEDAIKQTS-QTLQLLIEHDPVP 107 (118)
T ss_dssp CCTTCCEEEESSSBTTTSCHHHHHHHHHCCS-SCEEEEEEECSSC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC
T ss_conf 9999999998999889998999999997489-9699999979978
No 126
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.70A {Homo sapiens}
Probab=49.80 E-value=10 Score=16.36 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-||+--|++-|-..++++||+++ .+|++.+.
T Consensus 44 L~~GD~Il~VNg~~v~~~~~~ev~~~l~~~~-~~v~L~v~ 82 (87)
T 2pa1_A 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLD 82 (87)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 9999999999999999998999999987699-98999999
No 127
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=49.48 E-value=11 Score=16.05 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=31.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|..|+-|++-=|+|.+...++++||.++ ..|.+.+..|.
T Consensus 46 l~~GD~Il~VNg~~v~~~~~~~v~~~lr~~~-~~v~l~V~~~~ 87 (90)
T 2he4_A 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKARE-DEARLLVVGPS 87 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTSS-SEEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC
T ss_conf 9999999999999989998999999987699-97999998988
No 128
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=49.13 E-value=11 Score=16.01 Aligned_cols=44 Identities=11% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHCCCCEEEEEHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 533893289740353-333388899999853997899996589805
Q gi|254780336|r 354 ILAGKRVVLIDDSIV-RGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 354 ~i~gk~vvlvDDSIV-RGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
+-.|.+|+=|++--| +|.|-...+++||.++. .|.+.+.-+|..
T Consensus 73 L~~GD~Il~VNg~~v~~~~t~~ea~~ll~~~~~-~v~L~v~r~~~~ 117 (128)
T 2db5_A 73 LKENDQILAINHTPLDQNISHQQAIALLQQTTG-SLRLIVAREPVH 117 (128)
T ss_dssp CCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCS-EEEEEEEECCCS
T ss_pred CCCCCEEEEECCEECCCCCCHHHHHHHHHHCCC-EEEEEEEECCCC
T ss_conf 999999999999998879999999999980899-599999858988
No 129
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=49.07 E-value=6.8 Score=17.59 Aligned_cols=29 Identities=38% Similarity=0.430 Sum_probs=23.3
Q ss_pred CCCCCC---CCCCCHHHHHHHHHHHCCCCEEH
Q ss_conf 677201---20012047799999981996001
Q gi|254780336|r 292 IADIVV---PIPDGGVPAAIGYAKESGIPFEQ 320 (488)
Q Consensus 292 ~~DiV~---~VPdsg~~aA~gya~~~gip~~~ 320 (488)
++|+|+ .-||+|..+-+|||.++|+|.--
T Consensus 77 ~sD~via~l~~~d~G~~~ElG~A~a~~kPvi~ 108 (165)
T 2khz_A 77 QADVVVAEVTQPSLGVGYELGRAVALGKPILC 108 (165)
T ss_dssp HCSEEEEECSSCCHHHHHHHHHHHHTCSSEEE
T ss_pred HCCEEEEECCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 59999997899986589999999977985999
No 130
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=48.93 E-value=11 Score=15.99 Aligned_cols=40 Identities=8% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC------CCEEEEEEC
Q ss_conf 5338932897403533333888999998539------978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG------ASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG------a~evh~ri~ 393 (488)
+-.|.+|+=|+.--|+|-|...++++||+++ ...|++.|.
T Consensus 74 L~~GD~Il~VNg~~v~~~s~~evv~~lr~a~~~~~~~~~~V~L~V~ 119 (127)
T 1wg6_A 74 LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVIL 119 (127)
T ss_dssp SCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf 7769999999999988998999999998644345777887999993
No 131
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=48.83 E-value=11 Score=15.98 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=34.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|+.=-|+|.|...++++||.++ ..|++.+.-++
T Consensus 70 l~~GD~Il~INg~~v~~~~~~~v~~~lk~~~-~~v~L~v~r~~ 111 (124)
T 2daz_A 70 MRIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFIRNE 111 (124)
T ss_dssp CCTTCEECEESSCBCTTSCHHHHHHHHHHSC-SEEEEEEEECT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC
T ss_conf 9750689999999988998999999997599-86999999799
No 132
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; zinc, structural genomics consortium, SGC, alternative splicing; 1.60A {Homo sapiens}
Probab=48.78 E-value=11 Score=15.97 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=30.1
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Q ss_conf 553389328974035333338889999985399-7899996
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRV 392 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri 392 (488)
.+-.|.+|+-|++.-|+|-|...++++||++.. .+|.+.+
T Consensus 42 ~l~~GD~Il~INg~~v~~~~~~e~v~~ir~~~~~~~v~l~V 82 (88)
T 3bpu_A 42 GLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLV 82 (88)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99989999999999978998999999997399989999999
No 133
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=48.70 E-value=11 Score=15.97 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=26.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 38932897403533333888999998539978999
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
+++.|+++++| |..+...+.+|+++|-+.|..
T Consensus 51 ~~~~Iv~~C~~---g~rs~~aa~~L~~~G~~nv~~ 82 (106)
T 3hix_A 51 KSRDIYVYGAG---DEQTSQAVNLLRSAGFEHVSE 82 (106)
T ss_dssp TTSCEEEECSS---HHHHHHHHHHHHHTTCSCEEE
T ss_pred CCCEEEEECCC---CHHHHHHHHHHHHCCCCCEEE
T ss_conf 99849999999---829999999999829857899
No 134
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis F11}
Probab=48.45 E-value=12 Score=15.94 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 5533893289740353333388899999853997899996
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
..=++|.||+++++ |..+......|+++|-+.|....
T Consensus 76 ~~~~~~~Iiv~C~~---G~rS~~aa~~L~~~Gf~~v~~l~ 112 (148)
T 2fsx_A 76 ADQHERPVIFLCRS---GNRSIGAAEVATEAGITPAYNVL 112 (148)
T ss_dssp -----CCEEEECSS---SSTHHHHHHHHHHTTCCSEEEET
T ss_pred CCCCCCEEEEECCC---CHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 48999869998899---87999999999984974579946
No 135
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=48.09 E-value=12 Score=15.90 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=32.8
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 33893289740353333388899999853997899996589805
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
-.|.+|+-|++--|++-|...++++||+++ .+|.+.+.-++-.
T Consensus 58 ~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~-~~v~l~v~R~~~~ 100 (105)
T 1wha_A 58 QVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALLLEREAGS 100 (105)
T ss_dssp CTTCEEEEESSCBCTTCCHHHHHHHHTSCC-SCEEEEEEECCCC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC
T ss_conf 889999999999978998999999997599-8499999989999
No 136
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=47.77 E-value=12 Score=15.87 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=28.6
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCC
Q ss_conf 33893289740353333388899999853997-899996589
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLRVASP 395 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ri~sP 395 (488)
-.|.+|+=|+.-=|+|.|...++++||+++.. .|.+.+.-|
T Consensus 78 ~~GD~Il~VNG~~v~~~t~~ea~~lL~~~~~~~~v~L~V~R~ 119 (121)
T 2kom_A 78 KAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119 (121)
T ss_dssp CSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEEC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 989999999999978998999999997189989899999779
No 137
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=47.77 E-value=12 Score=15.87 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3893289740353333388899999853997899996
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+++.|++...| |..+....+.|+++|-+.|++.-
T Consensus 40 ~~~~iv~yC~~---G~rs~~aa~~L~~~G~~~v~~~g 73 (85)
T 2jtq_A 40 KNDTVKVYCNA---GRQSGQAKEILSEMGYTHVENAG 73 (85)
T ss_dssp TTSEEEEEESS---SHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCCEEEEECCC---CHHHHHHHHHHHHCCCCEEEECC
T ss_conf 88779998899---82799999999986999799765
No 138
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=47.43 E-value=12 Score=15.83 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=31.1
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 338932897403533333888999998539978999965898
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-.|..|+-|++--|+|-|...++++||.++. .|.+.+..+.
T Consensus 73 ~~GD~Il~VNG~~v~~~t~~evv~llk~~~~-~v~l~V~r~~ 113 (120)
T 2iwo_A 73 RVGDRIVTICGTSTEGMTHTQAVNLLKNASG-SIEMQVVAGG 113 (120)
T ss_dssp CTTCEEEEETTEECTTCBHHHHHHHHHHCCS-EEEEEEECCT
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEECC
T ss_conf 9999999999999889989999999972899-5999999699
No 139
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.38 E-value=11 Score=16.00 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=25.1
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 38932897403533333888999998539978999965898
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
.|.+|+-|++--| +.|...++++||.++-. |.+.+..+|
T Consensus 50 ~GD~Il~VNg~~v-~~~~~ev~~ll~~~~~~-v~L~v~~~p 88 (91)
T 2e7k_A 50 VGDIIKEVNGQPV-GSDPRALQELLRNASGS-VILKILSGP 88 (91)
T ss_dssp TTCEEEEETTEEC-TTCHHHHHHHHHTCCSS-BCEEEECCS
T ss_pred CCCEEEEECCEEC-CCCHHHHHHHHHCCCCC-EEEEEECCC
T ss_conf 6999999999987-89899999998669896-999998289
No 140
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=46.69 E-value=12 Score=15.76 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=35.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHC---CCCEEEEEECC-CCCCC
Q ss_conf 533893289740353333388899999853---99789999658-98058
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSA---GASEVHLRVAS-PMVLY 399 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~a---Ga~evh~ri~s-Ppi~~ 399 (488)
+-.|.+|+-|++--|+|-|....+++||++ +...|++.++- ||-.+
T Consensus 62 L~~GD~Il~VNg~~v~~~t~~ea~~~l~~a~~~~~~~v~l~v~r~pp~~~ 111 (118)
T 1v6b_A 62 VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEY 111 (118)
T ss_dssp SCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
T ss_conf 98799999999999889979999999986434799989999983898877
No 141
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.56 E-value=12 Score=15.74 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=33.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|..|+=|++--|++.|...++++||.+ ...|++.+...
T Consensus 58 L~~GD~Il~INg~~v~~~~~~ev~~llk~~-~~~v~l~v~~~ 98 (113)
T 1um7_A 58 LRRGDRILSVNGVNLRNATHEQAAAALKRA-GQSVTIVAQYR 98 (113)
T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHHSC-CSEEEEEEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEEC
T ss_conf 999999999999998899899999999808-99599999989
No 142
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=46.39 E-value=10 Score=16.36 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 53389328974035333338889999985399789999658980
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
+-.|.+|+-|++--|+|-|...++++||++ ...|++.+...|-
T Consensus 54 l~~GD~Il~VNg~~v~~~~~~ev~~ll~~~-~~~v~L~v~~~p~ 96 (104)
T 3i4w_A 54 LRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYKPE 96 (104)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEECHH
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCC-CCEEEEEEEECCC
T ss_conf 999999999899465899899999999839-9919999998984
No 143
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=45.96 E-value=13 Score=15.68 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=30.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|++-|...++.+|+++| ..|.+.+.
T Consensus 50 L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~v~l~V~ 88 (91)
T 1m5z_A 50 LKPYDRLLQVNHVRTRDFDCCLVVPLIAESG-NKLDLVIS 88 (91)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 6399999999999989999999999987699-98999999
No 144
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consortium, SGC, cytoplasm, polymorphism, protein binding; 2.60A {Homo sapiens}
Probab=45.92 E-value=13 Score=15.68 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539-978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~sPp 396 (488)
+-.|..|+-|++-=|+|.|...++++||++. ..++.+++..|.
T Consensus 47 l~~GD~Il~VNg~~v~~~t~~ev~~~Lk~~~~~~~~~l~l~~p~ 90 (95)
T 3gge_A 47 ICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90 (95)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 99999999999999889979999999976999978999993788
No 145
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=45.75 E-value=13 Score=15.66 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=25.5
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 33893289740353333388899999853997899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
..+++|||+||+ |.........|+..|- ++++.-
T Consensus 320 ~~~~~iVl~d~~---~~ra~~~a~~L~~~G~-dv~vl~ 353 (539)
T 1yt8_A 320 VRGARLVLVDDD---GVRANMSASWLAQMGW-QVAVLD 353 (539)
T ss_dssp SBTCEEEEECSS---SSHHHHHHHHHHHTTC-EEEEEC
T ss_pred CCCCEEEEEECC---CCHHHHHHHHHHHCCC-EEEEEC
T ss_conf 899759999488---6349999999997797-767614
No 146
>1u39_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=45.03 E-value=13 Score=15.58 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=31.7
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 533893289740353333388899999853997899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+-.|.+|+=|++-=|+|-|...++++|+.++ .+|.+.+
T Consensus 40 L~~GD~Il~VNg~~v~~~s~~~~~~ll~~~~-~~v~l~v 77 (80)
T 1u39_A 40 VRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKT 77 (80)
T ss_dssp CCTTEEECEETTEEGGGSCHHHHHHHHHTCC-EEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEE
T ss_conf 9999999999999979997999999986698-9899999
No 147
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=44.92 E-value=13 Score=15.57 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|.+-|...++++||.+| .+|.+.+.
T Consensus 45 L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~-~~v~L~V~ 83 (89)
T 2q3g_A 45 VAVGDWVLSIDGENAGSLTHIEAQNKIRACG-ERLSLGLS 83 (89)
T ss_dssp CCTTCEEEEETTEEGGGCCHHHHHHHHHTCT-TEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 9999999999999999998999999987699-98999999
No 148
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=44.76 E-value=13 Score=15.56 Aligned_cols=42 Identities=36% Similarity=0.469 Sum_probs=30.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|..|+-|+.-=|+|-|...++++|+.++. .|++.+..|.
T Consensus 45 l~~GD~Il~INg~~v~~~~~~ev~~li~~~~~-~v~L~V~~~~ 86 (91)
T 1g9o_A 45 LLAGDRLVEVNGENVEKETHQQVVSRIRAALN-AVRLLVVDPE 86 (91)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCSS-EEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCC
T ss_conf 99899999999999999989999999975999-7999998999
No 149
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.67 E-value=13 Score=15.55 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=33.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+=|++--|++-|...++++||+++ .+|.+.+.-+
T Consensus 61 L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~-~~v~l~v~~~ 101 (117)
T 1v62_A 61 LHPGDHILSIDGTSMEHCSLLEATKLLASIS-EKVRLEILPV 101 (117)
T ss_dssp CCTTCBEEEETTEETTSCCHHHHHHHHHSCS-SEEEEEECCB
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf 9728899999999988998999999998399-9489999969
No 150
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=43.80 E-value=13 Score=15.46 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC--EEEEEECCCCC
Q ss_conf 533893289740353333388899999853997--89999658980
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS--EVHLRVASPMV 397 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~--evh~ri~sPpi 397 (488)
+-.|.+|+-|++--|+|-|....+++||++..+ .|.+.++-+.=
T Consensus 52 L~~GD~Il~VNg~~l~~~s~~ea~~~lr~~~~~~~~v~l~v~r~~~ 97 (108)
T 3cbz_A 52 IEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97 (108)
T ss_dssp CCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 9699999999999988998999999998555689719999970799
No 151
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=43.73 E-value=11 Score=16.07 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=16.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3893289740353333388899999853997
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488)
+.|||++|||+-.-. +.+.++|...|-.
T Consensus 5 ~~krILiVDDd~~~~---~~l~~~L~~~g~~ 32 (132)
T 3lte_A 5 QSKRILVVDDDQAMA---AAIERVLKRDHWQ 32 (132)
T ss_dssp --CEEEEECSCHHHH---HHHHHHHHHTTCE
T ss_pred CCCEEEEEECCHHHH---HHHHHHHHHCCCE
T ss_conf 898699997999999---9999999988999
No 152
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=43.54 E-value=14 Score=15.43 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=34.6
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 38932897403533333888999998539978999965898
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
.|..|+-|++--|+|-|...++++|+.+.- .|++.+.-|.
T Consensus 52 ~GD~Il~INg~~v~~~~~~~v~~ll~~~~~-~v~L~v~R~~ 91 (96)
T 2qkv_A 52 RGDIITKFNGDALEGLPFQVSYALFKGANG-KVSMEVTRPK 91 (96)
T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHHTCSS-EEEEEEECCC
T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCC
T ss_conf 899999999999779989999999977998-5999998389
No 153
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=43.22 E-value=14 Score=15.40 Aligned_cols=45 Identities=9% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 5338932897403533333888999998539978999965898058
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLY 399 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~ 399 (488)
+-.|.+|+-|++--|++-|...++++|+.++ ..|.+.+...|-.+
T Consensus 60 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~~~~ 104 (117)
T 1uit_A 60 LEYGDQLLEFNGINLRSATEQQARLIIGQQC-DTITILAQYNPHVH 104 (117)
T ss_dssp CCTTCEECEETTEETTTCCHHHHHHHTTSCC-SEEEEEECCCSCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCEE
T ss_conf 9999999999999988999999999987799-84999999999414
No 154
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=42.90 E-value=14 Score=15.36 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=32.4
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 3389328974035333338889999985399789999658
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
-.|.+|+=|++-=|+|-+...++++||.++.. |.+.+.-
T Consensus 55 ~~GD~Il~VNg~~v~~~~~~~vv~~l~~~~~~-v~L~v~r 93 (113)
T 2g5m_B 55 QVNDLLVEVDGTSLVGVTQSFAASVLRNTKGR-VRFMIGR 93 (113)
T ss_dssp CTTCBEEEETTEECSSCCHHHHHHHHHHSCSS-CEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCE-EEEEEEE
T ss_conf 98999999999997899799999998769985-9999996
No 155
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=42.35 E-value=14 Score=15.30 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHCCCCEEHHEECCCCCC----CEEE--------EC-CH---HHHHHHHHHCCCCCHHHHCCCCEEEE
Q ss_conf 012047799999981996001001176532----1011--------06-44---67776532013432455338932897
Q gi|254780336|r 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVG----RTFI--------EP-SH---HIRAFGVKLKHSANRTILAGKRVVLI 363 (488)
Q Consensus 300 Pdsg~~aA~gya~~~gip~~~~lvkn~y~g----RtFI--------~p-~~---~~R~~~v~~K~~~~~~~i~gk~vvlv 363 (488)
|.++..+|.-+.+..|+||... +..+| ..|+ .+ .+ .+|.+.+.. +.--+..+.||++.+.
T Consensus 291 ~~~~~~~a~~Le~~~G~p~~~~---~~P~Gi~~Td~fL~~l~~~~G~~~~~~i~~er~rl~da-~~d~~~~l~GKrvaI~ 366 (519)
T 1qgu_B 291 PWQLLKSKKVVQEMWNQPATEV---AIPLGLAATDELLMTVSQLSGKPIADALTLERGRLVDM-MLDSHTWLHGKKFGLY 366 (519)
T ss_dssp TTTCHHHHHHHHHTSCCCCCCC---CCCBSHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEC---CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHCCCCEEEEE
T ss_conf 5679999999999859982614---78788799999999999986899448999999999999-9999997189679998
Q ss_pred EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 403533333888999998539978999965898
Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-|. ...-.+.+.|+|.|+.=+|+.+..++
T Consensus 367 gdp----~~~~~la~fL~ElG~ep~~v~~~~~~ 395 (519)
T 1qgu_B 367 GDP----DFVMGLTRFLLELGCEPTVILSHNAN 395 (519)
T ss_dssp SCH----HHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred CCC----HHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 883----45899999999879945698617998
No 156
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=42.28 E-value=14 Score=15.30 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=33.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCC
Q ss_conf 53389328974035333338889999985399-78999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri~sPp 396 (488)
+-.|..|+=|++--|+|.|...++++||+++. ..|.+.+.=|+
T Consensus 58 l~~GD~Il~INg~~v~~~t~~e~~~ll~~~~~~~~v~l~v~r~~ 101 (111)
T 2koj_A 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE 101 (111)
T ss_dssp SCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 99999999999999889999999999981899998999998289
No 157
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, peptide, bound ligand, domain, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.75A {Homo sapiens}
Probab=42.19 E-value=13 Score=15.46 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=24.7
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 338932897403533333888999998539978999965
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
-.|.+|+-|++--|+|-|...++++||+++ ..|.+.+.
T Consensus 73 ~~GD~Il~VNg~~v~~~s~~eav~ll~~~~-~~v~L~V~ 110 (118)
T 3b76_A 73 KTGDILLNVDGVELTEVSRSEAVALLKRTS-SSIVLKAL 110 (118)
T ss_dssp CTTCEEEEETTEEGGGSCHHHHHHHHHSCC-SEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 889999999999988998999999997299-90999999
No 158
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=41.86 E-value=14 Score=15.25 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=26.0
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 338932897403533333888999998539978999965
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
-.|.+|+=|++-=|+|.|...++++||.++ ..|.+.+.
T Consensus 64 ~~GD~Il~VNg~~v~~~~~~~a~~~lk~~~-~~v~L~v~ 101 (108)
T 2jre_A 64 EPNDKILRVDDVNVQGMAQSDVVEVLRNAG-NPVRLLLI 101 (108)
T ss_dssp CSSEEEEEETTEECTTSCHHHHHHHHHHHC-SEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 999999999999988998999999997599-84899999
No 159
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.72 E-value=12 Score=15.86 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=31.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+=||..=|++-|...++++|+++|. +|++.+-
T Consensus 79 L~~GD~Il~Ing~~v~~~~~~e~v~~i~~~g~-~v~L~V~ 117 (126)
T 2yuy_A 79 LCTGDRIIKVNGESVIGKTYSQVIALIQNSDT-TLELSVM 117 (126)
T ss_dssp CCSSCCCCEETTEECSSCCHHHHHHHHHTCTT-EEEEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE
T ss_conf 98899999999999889999999999877999-7999999
No 160
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=41.69 E-value=14 Score=15.24 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=29.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 533893289740353333388899999853997899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+-.|.+|+-|+.--|.+-|...++.+|+++| .+|.+.+
T Consensus 55 L~~GD~I~~Ing~~v~~~~~~~~~~~i~~~~-~~v~L~v 92 (96)
T 2ego_A 55 LTPGDTIASVNGLNVEGIRHREIVDIIKASG-NVLRLET 92 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEE
T ss_conf 9889999999999988999999999987699-9899999
No 161
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=41.49 E-value=15 Score=15.21 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=31.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|..|+-|++--|+|-|...++++||++|.. |.+.+.
T Consensus 122 l~~GD~il~vng~~~~~~~~~~~~~~l~~~~~~-v~l~v~ 160 (263)
T 1z87_A 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKE-VVLEVK 160 (263)
T ss_dssp CCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSC-CCEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCE-EEEEEE
T ss_conf 999999999899678899599999999858997-889999
No 162
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp}
Probab=41.29 E-value=15 Score=15.19 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=60.8
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCC------CCCHHHHHHHH
Q ss_conf 338932897403533333888999998539978999965898058865650058978885466------99988999870
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANK------CSSPQEMCNFI 428 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~------~~~~eei~~~i 428 (488)
++||+|.+| =-|..-+.+.++|+..|.+ |+.-..+++-..........++.+||++.- ....+|-+..|
T Consensus 138 l~gktvgIi----G~G~IG~~va~~l~~fg~~-v~~~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~Plt~~T~~li 212 (324)
T 3hg7_A 138 LKGRTLLIL----GTGSIGQHIAHTGKHFGMK-VLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLF 212 (324)
T ss_dssp STTCEEEEE----CCSHHHHHHHHHHHHTTCE-EEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSB
T ss_pred CCCCEEEEE----EEEECCCHHHHCCCCCCCE-EECCCCCCCCCHHHHCCCCCCCHHCCCCCCCCCEEECCCCCCCHHHH
T ss_conf 658888999----6650550231024676755-64032343321011013210001004445664312058984202120
Q ss_pred CCCEE---------------EEECHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHH
Q ss_conf 99778---------------88339899986114666667567320121378766876455
Q gi|254780336|r 429 GVDSL---------------GFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQ 474 (488)
Q Consensus 429 gadsl---------------~yls~e~l~~ai~~~~~~~~~~~~c~~cftG~Yp~~~~~~~ 474 (488)
+++.| .-...++|.+|+.. ..+.-++.+--++.|.+.+.
T Consensus 213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-------g~l~ga~lDV~~~EP~~~~~ 266 (324)
T 3hg7_A 213 TASRFEHCKPGAILFNVGRGNAINEGDLLTALRT-------GKLGMAVLDVFEQEPLPADS 266 (324)
T ss_dssp CTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHT-------TSSSEEEESCCSSSSCCTTC
T ss_pred CHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHC-------CCCEEEEEECCCCCCCCCCC
T ss_conf 5899975579848998416440576999999974-------99527998069999999997
No 163
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=41.03 E-value=15 Score=15.17 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=36.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 533893289740353333388899999853997899996589805
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVL 398 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~ 398 (488)
+-.|.+|+=||+--|+|.|....+++||.++ ..|.+.+.-++-.
T Consensus 47 L~~GD~Il~INg~~v~~~t~~eav~~l~~~~-~~v~L~V~R~~~~ 90 (103)
T 1wf7_A 47 VRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQRASAA 90 (103)
T ss_dssp CCTTCBEEEETTEECSSCCHHHHHHHHHHCS-SEEEEEECCCSCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCC
T ss_conf 9999999999999889998999999998499-9699999989977
No 164
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=41.01 E-value=11 Score=15.98 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=32.3
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 3389328974035333338889999985399789999658
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
-.|.+|+-|++--|++.|...++++||.++ ..|.+.+.-
T Consensus 64 ~~GD~Il~VNg~~v~~~t~~e~v~~l~~~~-~~v~L~V~r 102 (111)
T 1uju_A 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCD 102 (111)
T ss_dssp CTTCBCCBBSSCBCTTSCHHHHHHHHSSCS-SEEEECCCC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 989899999999988998999999997289-949999998
No 165
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=40.82 E-value=15 Score=15.14 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHH-HHHHHHHCCCCEEH-HEECCCCCCCEEEECCH---HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHH
Q ss_conf 201200120477-99999981996001-00117653210110644---67776532013432455338932897403533
Q gi|254780336|r 295 IVVPIPDGGVPA-AIGYAKESGIPFEQ-GIIRNHYVGRTFIEPSH---HIRAFGVKLKHSANRTILAGKRVVLIDDSIVR 369 (488)
Q Consensus 295 iV~~VPdsg~~a-A~gya~~~gip~~~-~lvkn~y~gRtFI~p~~---~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVR 369 (488)
+++|.|=||-.. |...++.+|.++-. ..+++......-..+.+ .......+.-...+...+.....+++|....+
T Consensus 9 ~i~G~~GsGKTTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 88 (193)
T 2rhm_A 9 IVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRV 88 (193)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH
T ss_conf 99868999979999999999699387056620044442023438898864001435799999998833897387244310
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 333888999998539978999965898
Q gi|254780336|r 370 GTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 370 GtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-.....+..+++..+..=+++...+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~I~l~~~~ 115 (193)
T 2rhm_A 89 DLDTERMQNLHTIAPFTPIQIRCVASG 115 (193)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEECCH
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 778999999998379985289996999
No 166
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=40.77 E-value=15 Score=15.14 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=27.5
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 338932897403533333888999998539978999
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
-+++.||+++.+ |..+....+.|++.|-+.|+.
T Consensus 80 ~~~~~ivv~C~~---G~rS~~aa~~L~~~G~~nV~~ 112 (137)
T 1qxn_A 80 DPEKPVVVFCKT---AARAALAGKTLREYGFKTIYN 112 (137)
T ss_dssp CTTSCEEEECCS---SSCHHHHHHHHHHHTCSCEEE
T ss_pred CCCCCEEEECCC---CCCHHHHHHHHHHCCCCCEEE
T ss_conf 977637987389---983999999999849966798
No 167
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.53 E-value=15 Score=15.11 Aligned_cols=40 Identities=13% Similarity=0.358 Sum_probs=31.8
Q ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 55338932897403533333888999998539978999965
Q gi|254780336|r 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 353 ~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
.+-.|.+|+-|++--|++-|...++++||.++- .+.+.+.
T Consensus 47 ~L~~GD~Il~INg~~v~~~s~~e~~~llk~~~~-~v~L~V~ 86 (96)
T 2edv_A 47 KLFPGDQILQMNNEPAEDLSWERAVDILREAED-SLSITVV 86 (96)
T ss_dssp TSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSS-CEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE
T ss_conf 789999999999999889989999999975998-5999999
No 168
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=40.46 E-value=15 Score=15.11 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 372899999999999987
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAK 287 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~ 287 (488)
.-.++..+|.++-+...+
T Consensus 403 ~~~~l~~F~~~l~~~~~~ 420 (666)
T 2zxr_A 403 DEALFPAFKARVEAYAAR 420 (666)
T ss_dssp CGGGHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 652159999999999985
No 169
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidoreductase; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=40.44 E-value=15 Score=15.10 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCEEEE---EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC--------CEECCCHHHHH
Q ss_conf 932897---4035333338889999985399789999658980588656--------50058978885
Q gi|254780336|r 358 KRVVLI---DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFY--------GIDIPDPTALL 414 (488)
Q Consensus 358 k~vvlv---DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~y--------Gid~p~~~eLi 414 (488)
|.|+++ .+.+=+-..-++=++.|++.|. +| -||+...|+. |-.|++.++.+
T Consensus 116 ~PviiaPaMn~~M~~~p~~~~ni~~L~~~G~---~v---i~P~~~~~g~la~g~~~~gr~~~~p~~i~ 177 (194)
T 1p3y_1 116 HNTIFFPNMNDLMWNKTVVSRNIEQLRKDGH---IV---IEPVEIMAFEIATGTRKPNRGLITPDKAL 177 (194)
T ss_dssp SCCEEEECCCHHHHTCHHHHHHHHHHHHHTC---EE---CCCBCCC------------CBCCCHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHCCC---EE---ECCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 9806886838999953789999999996799---99---68767886313137836998879999999
No 170
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=40.35 E-value=12 Score=15.76 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=33.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCC
Q ss_conf 53389328974035333338889999985399-789999658980588
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRVASPMVLYP 400 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri~sPpi~~p 400 (488)
+-.|.+|+-|++--|++.|...++++||.++. -.|.+.+.-++..-|
T Consensus 53 L~~GD~Il~VNg~~v~~~~~~e~~~llr~~~~~~~v~l~v~r~~~~~P 100 (103)
T 1uep_A 53 LHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGP 100 (103)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
T ss_conf 988999999999996899799999999739999989999975899978
No 171
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=40.23 E-value=14 Score=15.33 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=6.3
Q ss_pred CCCCCEEEEEEE
Q ss_conf 158870279999
Q gi|254780336|r 39 HRGQEATGIISF 50 (488)
Q Consensus 39 HRGqdsaGIa~~ 50 (488)
+|+.++.|+.+.
T Consensus 16 ~k~~~glGf~l~ 27 (216)
T 2krg_A 16 KKGPSGYGFNLH 27 (216)
T ss_dssp ECCSSSSCEEEC
T ss_pred EECCCCCCEEEE
T ss_conf 879982356997
No 172
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=40.22 E-value=15 Score=15.08 Aligned_cols=30 Identities=3% Similarity=-0.012 Sum_probs=17.0
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHH
Q ss_conf 88899999853997899996589805886565005897888
Q gi|254780336|r 373 SVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTAL 413 (488)
Q Consensus 373 ~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eL 413 (488)
.+++.+++++.|. |.+. --+|++-.+.++|
T Consensus 296 ~~~~~~l~~~lgl----------P~~L-~~~gi~~~~~~~l 325 (370)
T 1jq5_A 296 IERYIELYLCLDL----------PVTL-EDIKLKDASREDI 325 (370)
T ss_dssp HHHHHHHHHHTTC----------CCST-TTTTCTTCCHHHH
T ss_pred HHHHHHHHHHCCC----------CCCH-HHCCCCCCCHHHH
T ss_conf 9999999998799----------9998-9959897769999
No 173
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}
Probab=39.89 E-value=15 Score=15.11 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEC----CCCCCCCCCCC
Q ss_conf 3888999998539978999965----89805886565
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVA----SPMVLYPDFYG 404 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~----sPpi~~pc~yG 404 (488)
-++.|++.+++.|+++|..--+ -|..+.+..++
T Consensus 100 ~a~~i~~~~~~~gv~~ii~lgg~~~~~~~t~~~~v~~ 136 (250)
T 3mnf_A 100 FCNELLAFAHELGVELVVVLGALLGDTPHTRPVPVSG 136 (250)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEEEEESCCTTSCCCEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEE
T ss_conf 9999999999759968999455147888877730899
No 174
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=39.60 E-value=15 Score=15.16 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=28.1
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 338932897403533333888999998539978999965898
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-.|.+|+-|++=-|+|.|...++++||.++ ..|.+.+...|
T Consensus 58 ~~GD~Il~INg~~v~~~s~~e~~~ll~~~~-~~v~L~v~~~~ 98 (119)
T 1tp5_A 58 RKGDQILSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP 98 (119)
T ss_dssp CTTEEEEEETTEECTTCCHHHHHHHHHTSC-SEEEEEEEECH
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECC
T ss_conf 999999999998988998999999998599-96999999898
No 175
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=39.08 E-value=16 Score=14.96 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=28.9
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 33893289740353333388899999853997899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
-++++||+++.| |..+....+.|+++|-+.|.+.-
T Consensus 80 ~~~~~vi~~C~~---G~rs~~aa~~L~~~G~~~v~~l~ 114 (129)
T 1tq1_A 80 GQSDNIIVGCQS---GGRSIKATTDLLHAGFTGVKDIV 114 (129)
T ss_dssp CTTSSEEEEESS---CSHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCEEEEECCC---CHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 999849998899---84999999999981896879932
No 176
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=38.80 E-value=16 Score=14.93 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=34.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 53389328974035333338889999985399789999658980
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
+-.|.+|+=|+.--|+|-|...++++||.++ .+|.+.+.-|+=
T Consensus 55 l~~GD~Il~INg~~v~~~s~~~v~~~l~~~~-~~v~l~v~R~~~ 97 (103)
T 1wfv_A 55 MRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGTG 97 (103)
T ss_dssp SCTTCEEEEETTEECSSCCHHHHHHHHHHHC-SEECEEEECTTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCC
T ss_conf 8999999999999998997999999997389-969999998999
No 177
>2vph_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, ptpmeg, hydrolase, cytoplasm, cytoskeleton, megakaryocyte, dephosphorylation; 1.90A {Homo sapiens}
Probab=38.50 E-value=16 Score=14.90 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=32.2
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC---EEEEEEC
Q ss_conf 533893289740353333388899999853997---8999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS---EVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~---evh~ri~ 393 (488)
+-.|..|+-|++-=|+|.|...++++||+++.+ +|.+.+-
T Consensus 50 L~~GD~Il~INg~~v~~~~~~~~~~~lr~~~~~~~~~v~l~v~ 92 (100)
T 2vph_A 50 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 92 (100)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHCGGGCBTTBEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9999999999999989998999999998668889739999992
No 178
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=38.26 E-value=16 Score=14.88 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=21.6
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3389328974035333338889999985399789999
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
+++.||++|||+-. ..+.+.++|.+.|-..|..+
T Consensus 3 l~~lrILiVDD~~~---~~~~l~~~L~~~g~~~v~~a 36 (129)
T 3h1g_A 3 LGSMKLLVVDDSST---MRRIIKNTLSRLGYEDVLEA 36 (129)
T ss_dssp ---CCEEEECSCHH---HHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHCCCEEEEEE
T ss_conf 87889999928899---99999999998699699998
No 179
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=38.20 E-value=16 Score=14.87 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=30.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+=|++--|+|-|....+++||++| .+|.+.+.
T Consensus 60 L~~GD~Il~VNg~~v~~~~~~eav~~l~~~~-~~v~L~V~ 98 (103)
T 1n7t_A 60 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIV 98 (103)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHCC-SEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 6899999999999988997999999997289-97999999
No 180
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Probab=37.98 E-value=16 Score=14.85 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=33.7
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 3389328974035333338889999985399789999658980
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMV 397 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi 397 (488)
-.|..|+-|++-=|+|-|...++++||.+. ..|.+++. |+.
T Consensus 48 ~~GD~Il~INg~~v~~~t~~e~~~~lk~~~-~~v~L~i~-p~~ 88 (93)
T 3o46_A 48 HVGDELREVNGIPVEDKRPEEIIQILAQSQ-GAITFKII-PGS 88 (93)
T ss_dssp CTTCEEEEETTEESTTSCHHHHHHHHHHCC-EEEEEEEE-CC-
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEE-ECC
T ss_conf 679999999999988998999999997699-91999996-088
No 181
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=37.89 E-value=16 Score=14.84 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=31.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|++-|...++++||+++ .+|.+.|.
T Consensus 64 L~~GD~Il~VNg~~v~~~~~~~vv~~lk~~~-~~v~L~V~ 102 (110)
T 1x5q_A 64 VRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVW 102 (110)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 9999999999999989998999999987799-97999999
No 182
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consortium, SGC, unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=37.56 E-value=17 Score=14.80 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=25.8
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 3389328974035333338889999985399789999658
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
-.|.+|+-|++--|.|.|...++++||.+| ..|++.+.-
T Consensus 46 ~~GD~Il~INg~~v~~~~~~e~~~~l~~~~-~~v~L~V~R 84 (91)
T 2pkt_A 46 CIGDVITAIDGENTSNMTHLEAQNRIKGCT-DNLTLTVAR 84 (91)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 999999989999999998999999987799-829999998
No 183
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; Cys Ser mutant, structural genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=37.15 E-value=12 Score=15.79 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=25.1
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEEEC
Q ss_conf 33893289740353333388899999853997-8999965
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLRVA 393 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ri~ 393 (488)
-.|..|+=|++.-|+|-|...++++|++++.. .|.+.+.
T Consensus 47 ~~GD~Il~VNg~~v~~~t~~ev~~~l~~~~~~~~v~L~V~ 86 (90)
T 2q9v_A 47 RSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVR 86 (90)
T ss_dssp CTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 8999999999999899989999999985899988999999
No 184
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein/oxidoreductase complex; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=36.87 E-value=17 Score=14.73 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=25.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 533893289740353333388899999853997899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+-.|.+|+=|++--|++-|...++++||+++. +|.+.+
T Consensus 49 L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~-~v~L~v 86 (90)
T 1qav_A 49 LFVGDAILSVNGEDLSSATHDEAVQALKKTGK-EVVLEV 86 (90)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTCCS-EEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEE
T ss_conf 99899999999999999989999999980899-599999
No 185
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural genomics, protein structure initiative; 2.10A {Bacillus halodurans}
Probab=36.51 E-value=17 Score=14.69 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=7.8
Q ss_pred CCCCCCCCCCHHHHH
Q ss_conf 772012001204779
Q gi|254780336|r 293 ADIVVPIPDGGVPAA 307 (488)
Q Consensus 293 ~DiV~~VPdsg~~aA 307 (488)
+|.++=+|=|+..-|
T Consensus 87 aD~mvIaPaSanTlA 101 (201)
T 3lqk_A 87 LDCMVIAPMTGNSTS 101 (201)
T ss_dssp CSEEEEEEECHHHHH
T ss_pred CCEEEEEECCHHHHH
T ss_conf 389999108887999
No 186
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=36.05 E-value=18 Score=14.64 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=14.9
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89328974035333338889999985399
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488)
||||++|||+-.= .+.+..+|.+.|-
T Consensus 2 ~~rILiVDD~~~~---r~~l~~~L~~~g~ 27 (120)
T 1tmy_A 2 GKRVLIVDDAAFM---RMMLKDIITKAGY 27 (120)
T ss_dssp CCEEEEECSCHHH---HHHHHHHHHHTTC
T ss_pred CCCEEEEECCHHH---HHHHHHHHHHCCC
T ss_conf 9869999199999---9999999998799
No 187
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=35.95 E-value=18 Score=14.63 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=5.9
Q ss_pred CCCCCCCCCCHHHH
Q ss_conf 77201200120477
Q gi|254780336|r 293 ADIVVPIPDGGVPA 306 (488)
Q Consensus 293 ~DiV~~VPdsg~~a 306 (488)
+|.++=+|=|+..-
T Consensus 85 aD~mvIaPaTaNTl 98 (207)
T 3mcu_A 85 LDCMVIAPLTGNSM 98 (207)
T ss_dssp CSEEEEEEECHHHH
T ss_pred CCEEEECCCCHHHH
T ss_conf 18999834767799
No 188
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=35.53 E-value=18 Score=14.58 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.0
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 3389328974035333338889999985399789999658
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
-.|.+|+-|++--|++.|...++++||+++ .+|++.+.-
T Consensus 69 ~~GD~Il~VNg~~v~~~t~~ev~~~i~~~~-~~v~L~v~r 107 (117)
T 1ujd_A 69 MEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVRL 107 (117)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHSCCS-SCEEEEEES
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 999999999999978997999999998399-959999997
No 189
>2v90_A PDZ domain-containing protein 3; alternative splicing, membrane, cytoplasm, protein-binding; 2.00A {Homo sapiens}
Probab=35.17 E-value=18 Score=14.55 Aligned_cols=40 Identities=35% Similarity=0.471 Sum_probs=23.7
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 33893289740353333388899999853997899996589
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
-.|.+|+=||+--|.+-|...++.+||.+| ..|.+.+..|
T Consensus 49 ~~GD~Il~Ing~~v~~~s~~~v~~~l~~~~-~~v~L~v~r~ 88 (96)
T 2v90_A 49 QAGDRLVAVAGESVEGLGHEETVSRIQGQG-SCVSLTVVDP 88 (96)
T ss_dssp CTTEEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEECC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC
T ss_conf 989999999999989999999999987798-9799999879
No 190
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylation, SH3 domain, protein bindin; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=35.15 E-value=18 Score=14.54 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=30.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 389328974035333338889999985399789999658
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
.|..|+=|++.-|++.|...++++|++++. ++++.+.-
T Consensus 42 ~GD~Il~vNg~~v~~~~~~~~~~~i~~~~~-~v~l~v~R 79 (81)
T 2rcz_A 42 EGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQR 79 (81)
T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC
T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEE
T ss_conf 999999999999888989999999877989-79999996
No 191
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.05 E-value=14 Score=15.26 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=26.4
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 33893289740353333388899999853997899996589
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
-.|.+|+-|++--|++ |....+++||.++ ..|.+.+..|
T Consensus 55 ~~GD~Il~VNg~~v~~-~~~e~v~lik~~~-~~v~L~V~R~ 93 (100)
T 2edp_A 55 RTGDELVNINGTPLYG-SRQEALILIKGSF-RILKLIVRRR 93 (100)
T ss_dssp CTTCEEEEETTEECCS-CSHHHHHHHHTCC-SSCEEEEEEC
T ss_pred CCCCEEEEECCEECCC-CHHHHHHHHHHCC-CEEEEEEECC
T ss_conf 8899999999998427-8999999998089-9299999709
No 192
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=34.97 E-value=18 Score=14.52 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=19.4
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 89328974035333338889999985399789999
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
+|||++|||+-. ..+.+..+|.+.|- +|+..
T Consensus 2 ~~rILiVDDd~~---~~~~l~~~L~~~G~-~v~~a 32 (127)
T 2jba_A 2 ARRILVVEDEAP---IREMVCFVLEQNGF-QPVEA 32 (127)
T ss_dssp CCEEEEECSCHH---HHHHHHHHHHHTTC-EEEEE
T ss_pred CCCEEEEECCHH---HHHHHHHHHHHCCC-EEEEE
T ss_conf 988999979999---99999999998799-99998
No 193
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21
Probab=34.91 E-value=18 Score=14.52 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=21.2
Q ss_pred CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 2455338932897403533333888999998539978999965898
Q gi|254780336|r 351 NRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 351 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+...+..++-+++|++--.......+++.|+..|-.-.-+.+++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 148 (287)
T 1gvn_B 103 ISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPK 148 (287)
T ss_dssp HHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCH
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 9999854888555443453789999999999679979999867981
No 194
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=34.26 E-value=19 Score=14.45 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=29.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 533893289740353333388899999853997899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+-.|.+|+-|++--|++.|...++++||.+| ..|.+.+
T Consensus 66 l~~GD~Il~VNg~~v~~~~~~~~~~~i~~~~-~~v~L~v 103 (104)
T 2z17_A 66 LQAGDVLANINGVSTEGFTYKQVVDLIRSSG-NLLTIET 103 (104)
T ss_dssp CCTTCBCCEETTEECTTCCHHHHHHHHHHTT-TEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEE
T ss_conf 9889999999999989999999999997698-9799998
No 195
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=34.06 E-value=19 Score=14.42 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHH-HHHCC
Q ss_conf 728999999999999874865677-2012001204779999998199600100117653210110644677765-32013
Q gi|254780336|r 271 GRSIYVSRRNMGKNLAKESPVIAD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFG-VKLKH 348 (488)
Q Consensus 271 g~~Vy~~R~~lG~~La~~~~~~~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~-v~~K~ 348 (488)
|.+++++-+-+.. -.| +|+-.|+.+. +.-+++.+.+|.--+.- +. . -|+|.+=+.. ++.++
T Consensus 87 gEs~~Dt~~~ls~--------~~d~ivvR~~~~~~--~~~~a~~~~vpVINa~~-----~~-~-HPtQaL~Dl~Ti~e~~ 149 (328)
T 3grf_A 87 KETVQDTAEVFSR--------MVDICTARLATKEM--MREMAQHASVPCINALD-----DF-G-HPLQMVCDFMTIKEKF 149 (328)
T ss_dssp --CHHHHHHHHTT--------TCSEEEEECSSHHH--HHHHHHHCSSCEEESSC-----SS-C-CHHHHHHHHHHHHHHH
T ss_pred CEEHHHHHHHHHC--------CCCEEEEECCCHHH--HHHHHHHCCCCEECCCC-----CC-C-CCHHHHHHHHHHHHHH
T ss_conf 6219999998733--------46534565250335--66777507862354776-----56-6-8269999999999984
Q ss_pred ---CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf ---4324553389328974035333338889999985399789999658980588
Q gi|254780336|r 349 ---SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 349 ---~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
..++..++|.++++++|. +.++....+..+...|+ .+++++|+-..|
T Consensus 150 g~~~~~~~~~~~l~i~~~gd~--~~~v~~S~~~~~~~~g~---~v~i~~P~~~~~ 199 (328)
T 3grf_A 150 TAAGEFSNGFKGIKFAYCGDS--MNNVTYDLMRGCALLGM---ECHVCCPDHKDF 199 (328)
T ss_dssp HHTTCCTTTGGGCCEEEESCC--SSHHHHHHHHHHHHHTC---EEEEECCSSGGG
T ss_pred CCCCCCCCCCCCCEEEECCCC--CCCHHHHHHHHHHHCCC---EEEEECCCCCCC
T ss_conf 653334675136247632777--65426799999997799---699963653355
No 196
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=34.05 E-value=19 Score=14.42 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=25.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 53389328974035333338889999985399789999658
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
+-.|.+|+-|++-=|.|-|...++++||++| ..|.+.+.-
T Consensus 52 L~~GD~I~~INg~~v~~~t~~~~~~~lr~~~-~~v~l~v~R 91 (97)
T 2iwn_A 52 IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG-QTVLLTLMR 91 (97)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHHTCC-SEEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 9999999999999978998999999987699-869999993
No 197
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=33.93 E-value=19 Score=14.41 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|.|-|....+++||.++ ..|.+.+.
T Consensus 52 L~~GD~Il~VNg~~v~~~t~~~av~~l~~~~-~~v~L~V~ 90 (95)
T 1mfg_A 52 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIV 90 (95)
T ss_dssp CCTTCEEEEETTEECTTCBHHHHHHHHHHCC-SEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 8899999999999988998999999998199-97999999
No 198
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=33.92 E-value=19 Score=14.41 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=62.8
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHH-HHCCCCCHHHHCCCCEEEEEHHHHHH
Q ss_conf 77-20120012047799999981996001001176532101106446777653-20134324553389328974035333
Q gi|254780336|r 293 AD-IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGV-KLKHSANRTILAGKRVVLIDDSIVRG 370 (488)
Q Consensus 293 ~D-iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v-~~K~~~~~~~i~gk~vvlvDDSIVRG 370 (488)
.| +|+=.|+.+.+ ..+|+.+.+|.--|.-. . =-|+|.+=+..- +.++ ..++|++|++|-| ..
T Consensus 102 ~D~iviR~~~~~~~--~~~a~~s~vPVINg~~~-~------~HPtQaL~Dl~Ti~e~~----g~~~~l~i~~vGd---~~ 165 (315)
T 1pvv_A 102 VDAIMARVYDHKDV--EDLAKYATVPVINGLSD-F------SHPCQALADYMTIWEKK----GTIKGVKVVYVGD---GN 165 (315)
T ss_dssp CSEEEEECSSHHHH--HHHHHHCSSCEEEEECS-S------CCHHHHHHHHHHHHHHH----SCCTTCEEEEESC---CC
T ss_pred CCEEEEEECCHHHH--HHHHHHCCCCEEECCCC-C------CCHHHHHHHHHHHHHHH----CCCCCCEEEEECC---CC
T ss_conf 88788860571069--99998679988969998-6------46778987678999872----8756877999678---75
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 33888999998539978999965898058865
Q gi|254780336|r 371 TTSVKIVQMIRSAGASEVHLRVASPMVLYPDF 402 (488)
Q Consensus 371 tT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~ 402 (488)
++.+..+.++...|+ .+++++|+-..|-.
T Consensus 166 ~v~~S~~~~~~~~g~---~v~~~~P~~~~~~~ 194 (315)
T 1pvv_A 166 NVAHSLMIAGTKLGA---DVVVATPEGYEPDE 194 (315)
T ss_dssp HHHHHHHHHHHHTTC---EEEEECCTTCCCCH
T ss_pred CHHHHHHHHHHHHCC---CEEEECCCCCCCCH
T ss_conf 315689999998418---78998898668868
No 199
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=33.85 E-value=19 Score=14.40 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=30.2
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 338932897403533333888999998539978999965
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
-.|.+|+-|++-=|++.|-..++++|+++| .+|.+.+-
T Consensus 42 ~~GD~Il~VNg~~v~~~t~~~~~~ll~~~~-~~v~L~V~ 79 (82)
T 1r6j_A 42 LTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITIM 79 (82)
T ss_dssp CSSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 989999999999978998999999997299-97999997
No 200
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.83 E-value=19 Score=14.40 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=31.2
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+-|++--|++-|...++++||.++ +|.+.+..|
T Consensus 54 L~~GD~Il~INg~~v~~~~~~~~v~ll~~~~--~v~L~V~r~ 93 (100)
T 2eeh_A 54 LCVGDKITEVNGLSLESTTMGSAVKVLTSSS--RLHMMVRRM 93 (100)
T ss_dssp CCSSCEEEEETTEECSSCCHHHHHHHHHSCS--SEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC--EEEEEEEEC
T ss_conf 9999999999999999998999999870899--599999989
No 201
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=33.31 E-value=19 Score=14.34 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=20.3
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 93289740353333388899999853997899996
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
=||++|||+-. ..+.+.++|+..|...|+++.
T Consensus 3 irVLiVDD~~~---~~~~l~~~L~~~g~~~v~~a~ 34 (133)
T 2r25_B 3 VKILVVEDNHV---NQEVIKRMLNLEGIENIELAC 34 (133)
T ss_dssp SCEEEECSCHH---HHHHHHHHHHHTTCCCEEEES
T ss_pred CEEEEEECCHH---HHHHHHHHHHHCCCEEEEEEC
T ss_conf 88999969899---999999999986994899989
No 202
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, structural genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=32.85 E-value=20 Score=14.29 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=27.7
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+=|++--|++-|...++++||++| ..|.+.+..+
T Consensus 58 L~~GD~Il~VNg~~v~~~t~~ea~~~l~~~~-~~v~L~v~r~ 98 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSI 98 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 9989999999999988998999999998489-9599999967
No 203
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=32.48 E-value=20 Score=14.25 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=37.6
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 53389328974035333338889999985399789999658980588
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYP 400 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~p 400 (488)
+-.|.+|+=|++--|+|-|....+++||.++ ..|.+.+.-|+-.+.
T Consensus 62 L~~GD~Il~INg~~v~~~t~~ea~~~ik~~~-~~v~L~V~r~~~~~~ 107 (116)
T 2dm8_A 62 LWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDEAHYR 107 (116)
T ss_dssp CCTTCEEEEETTEECSSSCHHHHHHHHHTCC-SEEEEEEECCSSCCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEECCCCCC
T ss_conf 9999999999999988998999999997499-859999996886667
No 204
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synaptic density, glutametergic receptors, carbohydrate metabolism, cell cycle; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=32.43 E-value=20 Score=14.24 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=31.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|..|+-|++-=|+|-|...++.+||.++ ..|.+.|+
T Consensus 130 L~~GD~Il~VNg~~l~~~s~~eav~~lr~~~-~~v~L~V~ 168 (170)
T 3egg_C 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIG 168 (170)
T ss_dssp CCTTCEEEEETTEECTTBCHHHHHHHHHHCC-SEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 9889999999999888998999999998799-86999999
No 205
>1u3b_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 2yt8_A
Probab=32.22 E-value=20 Score=14.22 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=32.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-||+-=|++.|...++++||.++ ..|++.|-
T Consensus 130 L~~GD~Il~VNG~~v~~~s~~e~~~ll~~~~-~~v~l~V~ 168 (185)
T 1u3b_A 130 VRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTM 168 (185)
T ss_dssp CCTTEEEEEETTEECTTSCHHHHHHHHHTCC-EEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCC-CEEEEEEE
T ss_conf 9989999999998998999999999998199-95999995
No 206
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=32.16 E-value=20 Score=14.21 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=14.4
Q ss_pred HHHHHHHHHCCCCCC------CCCCHHHHHHHHHH
Q ss_conf 999999986498242------34307898898987
Q gi|254780336|r 123 LTLRKKLISSGAIFQ------STSDTEVILHLIAR 151 (488)
Q Consensus 123 ~eLr~~L~~~g~~f~------s~sDTEvI~~Li~~ 151 (488)
+.+.+.|.+.|..+. .+.+.|.+...+..
T Consensus 59 ~~v~~~L~~~~i~~~vf~~v~~~p~~~~v~~~~~~ 93 (371)
T 1o2d_A 59 DDLKKLLDETEISYEIFDEVEENPSFDNVMKAVER 93 (371)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 99999998769859996886689799999999999
No 207
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C
Probab=32.08 E-value=20 Score=14.20 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=12.7
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9328974035333338889999985399
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488)
|||++|||+-. ..+.+...|.+.|-
T Consensus 3 ~rILvVDD~~~---~~~~l~~~L~~~g~ 27 (122)
T 3gl9_A 3 KKVLLVDDSAV---LRKIVSFNLKKEGY 27 (122)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTTC
T ss_pred CCEEEEECCHH---HHHHHHHHHHHCCC
T ss_conf 85999969999---99999999998799
No 208
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=31.84 E-value=20 Score=14.18 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHH-HHHCC
Q ss_conf 37289999999999998748656772012001204779999998199600100117653210110644677765-32013
Q gi|254780336|r 270 SGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFG-VKLKH 348 (488)
Q Consensus 270 ~g~~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~-v~~K~ 348 (488)
-|.++.++=+-|. .-.+ .+|+-.|+.+.. .-+++.+.+|.--|.-. . =-|+|.+=+.. ++.++
T Consensus 108 kgEs~~Dt~~~ls----~y~D---~iv~R~~~~~~~--~~~a~~~~vPvIN~~~~-----~--~HPtQaL~Dl~Ti~e~~ 171 (359)
T 2w37_A 108 KKESTSDTAKVLG----SMFD---GIEFRGFKQSDA--EILARDSGVPVWNGLTD-----E--WHPTQMLADFMTVKENF 171 (359)
T ss_dssp TSSCHHHHHHHHH----HHCS---EEEEESSCHHHH--HHHHHHSSSCEEEEECS-----S--CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HCCC---EEEEECCCHHHH--HHHHHHCCCCEECCCCC-----C--CCHHHHHHHHHHHHHHH
T ss_conf 7422889999864----0464---465515505569--99986148856657777-----4--57899999999999983
Q ss_pred CCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 432455338932897403533333888999998539978999965898058865
Q gi|254780336|r 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDF 402 (488)
Q Consensus 349 ~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~ 402 (488)
..++|+++++|-| .+.++....+.++...|. ++++++|+-..|..
T Consensus 172 ----g~l~~~~i~~vgd--~~~~v~~S~~~~~~~~g~---~v~~~~P~~~~p~~ 216 (359)
T 2w37_A 172 ----GKLQGLTLTFMGD--GRNNVANSLLVTGAILGV---NIHIVAPKALFPTE 216 (359)
T ss_dssp ----SCCTTCEEEEESC--TTSHHHHHHHHHHHHHTC---EEEEECCGGGSCCH
T ss_pred ----CCCCCCEEEEECC--CCCCCCCCHHHHHHHCCC---EEEEECCCCCCCCH
T ss_conf ----9635755999868--865715568999864699---89995783348868
No 209
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=31.83 E-value=20 Score=14.18 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=33.5
Q ss_pred HHCCCCEEEEEHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 533893289740353-3333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIV-RGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIV-RGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+-|++--| +|.|...++++||+++- .|.+.++=||
T Consensus 68 L~~GD~Il~VNg~~v~~~~~~~~a~~~lk~~~~-~v~L~v~R~~ 110 (117)
T 2o2t_A 68 LKETDQILAINGQALDQTITHQQAISILQKAKD-TVQLVIARGS 110 (117)
T ss_dssp CCTTCEEEEETTEECCTTSCHHHHHHHHHHCCS-EEEEEEESSC
T ss_pred CCCCCEEEEECCEECCCCCCHHHHHHHHHCCCC-EEEEEEEECC
T ss_conf 989999999999997779899999999973999-5999998489
No 210
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.78 E-value=20 Score=14.17 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=20.1
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEE
Q ss_conf 893289740353333388899999853997-89999
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLR 391 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~r 391 (488)
+|||++|||+-.- .+.+-++|++.|.. +|+..
T Consensus 2 ~krILiVdDd~~~---~~~l~~~L~~~g~~~~v~~a 34 (140)
T 1k68_A 2 HKKIFLVEDNKAD---IRLIQEALANSTVPHEVVTV 34 (140)
T ss_dssp CCEEEEECCCHHH---HHHHHHHHHTCSSCCEEEEE
T ss_pred CCEEEEEECCHHH---HHHHHHHHHHCCCCCEEEEE
T ss_conf 9809999799999---99999999967998189998
No 211
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A
Probab=31.77 E-value=20 Score=14.17 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=21.2
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 33893289740353333388899999853997899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
-.|..|+-|++-=|.|.|...++++||++| ..|.+.+
T Consensus 64 ~~GD~Il~vng~~v~~~~~~~v~~~i~~~~-~~v~l~V 100 (109)
T 1q3o_A 64 RMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVKV 100 (109)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEE
T ss_conf 879999999999989998999999998299-9699999
No 212
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=31.69 E-value=20 Score=14.16 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=44.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--------HHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf 9999998748656772012001204779999--------99819960010011765321011064467776532013432
Q gi|254780336|r 280 NMGKNLAKESPVIADIVVPIPDGGVPAAIGY--------AKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSAN 351 (488)
Q Consensus 280 ~lG~~La~~~~~~~DiV~~VPdsg~~aA~gy--------a~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~ 351 (488)
++-..|++ ....+=+++|=|++-...-..+ ....++|+..-+.|...-.| |+.. .|....
T Consensus 195 ~~~~~~~~-~G~~Ii~~sgR~~~~~~~T~~~l~~~~~~~~~~~~~~~~~l~mr~~~d~r----~d~~-------~K~e~~ 262 (301)
T 1ltq_A 195 ELSKMYAL-MGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTR----KDDV-------VKEEIF 262 (301)
T ss_dssp HHHHHHHH-TTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCCCSEEEECCTTCCS----CHHH-------HHHHHH
T ss_pred HHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCCCCC----CHHH-------HHHHHH
T ss_conf 99999985-79869999377404777279999861010433469753010367888989----5489-------999999
Q ss_pred HHHHCCC-C-EEEEEHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4553389-3-289740353333388899999853997899
Q gi|254780336|r 352 RTILAGK-R-VVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 (488)
Q Consensus 352 ~~~i~gk-~-vvlvDDSIVRGtT~k~iv~~lr~aGa~evh 389 (488)
...+.++ + +.++||- .++|.|.|+.|-.-.-
T Consensus 263 ~~~~~~~~~v~~~fdDr-------~~vv~~wr~~gl~~~q 295 (301)
T 1ltq_A 263 WKHIAPHFDVKLAIDDR-------TQVVEMWRRIGVECWQ 295 (301)
T ss_dssp HHHTTTTCEEEEEEECC-------HHHHHHHHHTTCCEEE
T ss_pred HHHCCCCCCEEEEECCC-------HHHHHHHHHCCCCEEE
T ss_conf 98526788659998797-------5899999984992798
No 213
>2uzc_A Human pdlim5, PDZ and LIM domain 5; polymorphism, metal-binding, enigma homolog, phosphorylation, signaling protein, zinc, PDZ domain, acetylation; 1.5A {Homo sapiens}
Probab=31.21 E-value=21 Score=14.11 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=28.0
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 3389328974035333338889999985399789999658
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVAS 394 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~s 394 (488)
-.|..|+-|++--|++-|...++++||.+| .+|++.+.-
T Consensus 46 ~~GD~Il~INg~~v~~~t~~ea~~~l~~~~-~~v~L~V~R 84 (88)
T 2uzc_A 46 RIGDVVLSIDGINAQGMTHLEAQNKIKGCT-GSLNMTLQR 84 (88)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTCC-SEEEEEEEC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEE
T ss_conf 999899999999999998999999987699-979999994
No 214
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=31.10 E-value=21 Score=14.09 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=27.1
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 338932897403533333888999998539978999965
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
-.|.+|+=|++--|+|-|...++++||.++. .|.+.+.
T Consensus 57 ~~GD~Il~INg~~v~~~s~~~~~~li~~~~~-~v~L~V~ 94 (98)
T 1ihj_A 57 KVGDRILSLNGKDVRNSTEQAVIDLIKEADF-KIELEIQ 94 (98)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHSCS-EEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE
T ss_conf 9999999999999889989999999987999-6999999
No 215
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=31.01 E-value=21 Score=14.08 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=16.3
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 328974035333338889999985399
Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488)
..|-+++ |.+.|+++||+-+.....
T Consensus 37 e~Ipl~~--V~~~~L~kVi~~c~~h~~ 61 (141)
T 1fs1_B 37 DPVPLPN--VNAAILKKVIQWCTHHKD 61 (141)
T ss_dssp SSEECTT--CCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCC--CCHHHHHHHHHHHHHHCC
T ss_conf 8526886--678999999999998442
No 216
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.92 E-value=21 Score=14.07 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 5338932897403533333888999998539978999965898
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
+-.|.+|+=|++--|++.|...++++|++++ ..|.+.+-.++
T Consensus 48 L~~GD~Il~INg~~v~~~~~~ev~~~i~~~~-~~v~l~V~~~~ 89 (102)
T 2d90_A 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQTTLLVLDKE 89 (102)
T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHHST-TEEEEEECSTT
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECCC
T ss_conf 9889999999999989998999999997499-96999999789
No 217
>1u37_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1u38_A
Probab=30.74 E-value=21 Score=14.05 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=30.2
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Q ss_conf 3389328974035333338889999985399-7899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri 392 (488)
-.|..|+-|++--|+|.|...++++||.++. ..|.+.+
T Consensus 49 ~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~L~v 87 (89)
T 1u37_A 49 NIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI 87 (89)
T ss_dssp CSSCEEEEETTEECTTSCHHHHHHHHHTCSSSSEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999999999999988998999999997399998999999
No 218
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=30.64 E-value=21 Score=14.04 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=31.0
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCC
Q ss_conf 3893289740353333388899999853997-8999965898
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLRVASPM 396 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ri~sPp 396 (488)
.|.+|+-|++--|+|-|...++++||.++.. .+.+..-.|+
T Consensus 54 ~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~~~l~l~~r~~~ 95 (127)
T 1b8q_A 54 AGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 95 (127)
T ss_dssp TTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEECCCC
T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 998999989999889969999999972999769999993999
No 219
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=30.61 E-value=21 Score=14.04 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|..|+-|++--|+|.|...++++||.++ .+|.+.+.
T Consensus 42 L~~GD~Il~INg~~v~~~~~~~v~~~i~~~~-~~v~l~v~ 80 (91)
T 2f5y_A 42 LQQLDTVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVW 80 (91)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCS-SEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 9779999999999979999999999987799-97999999
No 220
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal binding protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A
Probab=30.33 E-value=22 Score=14.01 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=30.1
Q ss_pred EECCCCCEEEEEECCCEEEEEECCHHCCCC---CCCEEEECCCCEEEEEE
Q ss_conf 825665415998269569998612001047---87412331787079994
Q gi|254780336|r 186 RDPIGIRPLIMGELHGKPIFCSETCALEIT---GAKYIRDVENGETIVCE 232 (488)
Q Consensus 186 RDp~GiRPL~~G~~~~~~v~ASEs~Al~~i---g~~~irdv~PGEiivi~ 232 (488)
=.|-|+|++.|.......++-+=++.+..+ |-.++.+|++|+++++-
T Consensus 86 L~pGa~~~pHwH~~aE~~yVl~G~~~vt~Vd~~Gr~~~~~l~~GDv~~~P 135 (385)
T 1j58_A 86 LKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFP 135 (385)
T ss_dssp ECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEEC
T ss_pred ECCCCCCCCCCCCHHHEEEEEEEEEEEEEECCCCCEEEEEECCCCEEEEC
T ss_conf 67996867724663638999953799999917994899872478789988
No 221
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=30.14 E-value=22 Score=13.99 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=31.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|+|.|...++++|+.++. +|.+.+.
T Consensus 64 L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~-~v~l~i~ 102 (125)
T 3hpk_A 64 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIHYN 102 (125)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHSCS-EEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE
T ss_conf 99899999999999899989999999980999-0999999
No 222
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=29.59 E-value=22 Score=13.92 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=60.8
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHH-HHHCCCCCHHHHCCCCEEEEEHHHHHHHHH
Q ss_conf 2012001204779999998199600100117653210110644677765-320134324553389328974035333338
Q gi|254780336|r 295 IVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFG-VKLKHSANRTILAGKRVVLIDDSIVRGTTS 373 (488)
Q Consensus 295 iV~~VPdsg~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~-v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~ 373 (488)
+|+=.|+.+.. .-+|+.+.+|.--+.--+. =-|+|.+=+.. ++.++. .++|++|.+|=| +-.+.+.
T Consensus 104 iviR~~~~~~~--~~~a~~~~vPVINAg~~~~------~HPtQ~L~Dl~Ti~e~~g----~l~glki~~vGd-~~~~~v~ 170 (308)
T 1ml4_A 104 IVIRHPKEGAA--RLAAEVAEVPVINAGDGSN------QHPTQTLLDLYTIKKEFG----RIDGLKIGLLGD-LKYGRTV 170 (308)
T ss_dssp EEEEESSTTHH--HHHHHTCSSCEEEEEETTS------CCHHHHHHHHHHHHHHSS----CSSSEEEEEESC-TTTCHHH
T ss_pred EEEEECHHHHH--HHHHHCCCCCEEECCCCCC------CCHHHHHHHHHHHHHHCC----CCCCCEEEEECC-CCCCHHH
T ss_conf 99972300058--9987558976775777987------680789986861756338----835777986458-7644128
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 8899999853997899996589805886
Q gi|254780336|r 374 VKIVQMIRSAGASEVHLRVASPMVLYPD 401 (488)
Q Consensus 374 k~iv~~lr~aGa~evh~ri~sPpi~~pc 401 (488)
+..+..+...| +++++++|+-..|+
T Consensus 171 ~S~~~~~~~~g---~~~~~~~P~~~~~~ 195 (308)
T 1ml4_A 171 HSLAEALTFYD---VELYLISPELLRMP 195 (308)
T ss_dssp HHHHHHGGGSC---EEEEEECCGGGCCC
T ss_pred HHHHHHHHHCC---CEEEEECCHHHCCC
T ss_conf 88999998769---83999796475487
No 223
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=29.26 E-value=22 Score=13.88 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=26.7
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEE
Q ss_conf 338932897403533333888999998539-97899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri 392 (488)
-.|.+|+-|++--|+|-|...++++||.+- ...|.+.+
T Consensus 45 ~~GD~Il~VNg~~v~~~~~~ev~~~l~~~~~g~~v~L~v 83 (85)
T 2i04_A 45 ETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLEL 83 (85)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf 899999999999988996999999997699989999999
No 224
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=28.92 E-value=23 Score=13.84 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=29.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 533893289740353333388899999853997899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
+-.|.+|+-|++--|+|-+...++++||.++ ..|-+.+
T Consensus 67 l~~GD~Il~Ing~~v~~~~~~~v~~ll~~~~-~~v~l~v 104 (113)
T 1va8_A 67 LHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVL 104 (113)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEE
T ss_pred CCCCCEEEEECCCEECCCCHHHHHHHHHCCC-CCEEEEE
T ss_conf 9749999999991777996999999985699-9299999
No 225
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=28.80 E-value=23 Score=13.83 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=31.8
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 33893289740353333388899999853997899996589
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
-.|.+|+-||+--|++-|...++.+|++++ ..|.+.+.-|
T Consensus 53 ~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~ 92 (97)
T 2w4f_A 53 RVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRE 92 (97)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTSC-SEEEEEEECC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEEEC
T ss_conf 999999999999999999999999976898-9899999989
No 226
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=28.34 E-value=23 Score=13.78 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 45533893289740353333388899999853997
Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS 386 (488)
Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ 386 (488)
+.-+++-||++|||+-.--.. +..+|...|..
T Consensus 9 ~~~lr~lrILiVDD~~~~r~~---l~~~L~~~g~~ 40 (143)
T 3m6m_D 9 RARVRSMRMLVADDHEANRMV---LQRLLEKAGHK 40 (143)
T ss_dssp ------CEEEEECSSHHHHHH---HHHHHHC--CE
T ss_pred HCCCCCCEEEEEECCHHHHHH---HHHHHHHCCCE
T ss_conf 215689979999588999999---99999987999
No 227
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=28.30 E-value=23 Score=13.77 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCCCHHHHHH----HHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHH---HHHH
Q ss_conf 0012047799----99998199600100117653210110644677765320134324553389328974035---3333
Q gi|254780336|r 299 IPDGGVPAAI----GYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSI---VRGT 371 (488)
Q Consensus 299 VPdsg~~aA~----gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSI---VRGt 371 (488)
--||-+++|. -||+.+|+|+.... ..++... .....+++.+|+||-+= ..-.
T Consensus 141 t~Dt~R~~A~eQLk~~a~~l~vp~~~~~------------~~~~l~~---------a~~~~~~~d~vlIDTaGr~~~~~~ 199 (296)
T 2px0_A 141 TTDTYRIAAVEQLKTYAELLQAPLEVCY------------TKEEFQQ---------AKELFSEYDHVFVDTAGRNFKDPQ 199 (296)
T ss_dssp ECCCSSTTHHHHHHHHHTTTTCCCCBCS------------SHHHHHH---------HHHHGGGSSEEEEECCCCCTTSHH
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEE------------CHHHHHH---------HHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 8079976899999999974179850455------------5666999---------998722488899968884312221
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHH
Q ss_conf 388899999853997899996589805886565005897888546699988999870997788833989
Q gi|254780336|r 372 TSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDG 440 (488)
Q Consensus 372 T~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~eLia~~~~~~eei~~~igadsl~yls~e~ 440 (488)
.+..+-++++...+-++|+.+++. +..+-+..- .+--+.++.+++.+--+|+
T Consensus 200 ~~~eL~~~~~~~~~~~~~LVl~a~-------------~~~~~~~~~----~~~~~~~~~~~lilTKLDe 251 (296)
T 2px0_A 200 YIDELKETIPFESSIQSFLVLSAT-------------AKYEDMKHI----VKRFSSVPVNQYIFTKIDE 251 (296)
T ss_dssp HHHHHHHHSCCCTTEEEEEEEETT-------------BCHHHHHHH----TTTTSSSCCCEEEEECTTT
T ss_pred HHHHHHHHHHHHCCCEEEEEEECC-------------CCCHHHHHH----HHHHCCCCCCEEEEEEECC
T ss_conf 799999975131686169997578-------------761359999----9996169998899981149
No 228
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=28.15 E-value=23 Score=13.75 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=23.9
Q ss_pred HCCCCEEEE--EHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 338932897--4035333338889999985399
Q gi|254780336|r 355 LAGKRVVLI--DDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 355 i~gk~vvlv--DDSIVRGtT~k~iv~~lr~aGa 385 (488)
+++.+++.- ++.+..|+|.+.++++++++|-
T Consensus 186 v~~g~~~TPp~~~~~L~GitR~~vl~l~~~~g~ 218 (277)
T 3daa_A 186 IKDGILYTHPANNMILKGITRDVVIACANEINM 218 (277)
T ss_dssp EETTEEEECCSSTTSCCCHHHHHHHHHHHHTTC
T ss_pred EECCEEECCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 989999717886664467899999999864035
No 229
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H}
Probab=27.77 E-value=23 Score=13.84 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=15.2
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 93289740353333388899999853997899
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh 389 (488)
|||++|||+-.-...++ .+|++.|. +|.
T Consensus 4 ~rILIVDDd~~~~~~l~---~~L~~~g~-~v~ 31 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLK---TIVEPIFG-NVE 31 (135)
T ss_dssp CEEEEECSCHHHHHHHH---HHHTTTCS-CEE
T ss_pred CEEEEEECCHHHHHHHH---HHHHHCCC-EEE
T ss_conf 99999929999999999---99997899-899
No 230
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural genomics, NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=27.70 E-value=24 Score=13.70 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.5
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 28974035333338889999985399
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488)
.++..|++..|+|.+.+++++++.|-
T Consensus 172 ~~~Tp~~~L~GItR~~vi~~~~~~g~ 197 (246)
T 2zgi_A 172 TLYLLEGGLEGITREKVAEAARGLGL 197 (246)
T ss_dssp EEEEECSSCCCHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99995566797799999999997798
No 231
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=27.51 E-value=24 Score=13.68 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=32.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 533893289740353333388899999853997899996589
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
+-.|.+|+-|++--|++-|...++++||.++. .|++.+--+
T Consensus 48 L~~GD~Il~INg~~v~~~t~~~~~~li~~~~~-~v~L~V~R~ 88 (94)
T 1vb7_A 48 LRPGDIIVAINGQSAENMLHAEAQSKIRQSAS-PLRLQLDRS 88 (94)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCCS-SEEEEEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEEC
T ss_conf 99999999899999999999999999877998-399999989
No 232
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406}
Probab=27.37 E-value=24 Score=13.66 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEE
Q ss_conf 533893289740353333388899999853997-8999
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHL 390 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ 390 (488)
.-+.++|++|||+-. ..+.+.++|+..|.. +|..
T Consensus 6 ~~k~~~ILiVDDd~~---~~~~l~~~l~~~g~~~~v~~ 40 (146)
T 3ilh_A 6 TRKIDSVLLIDDDDI---VNFLNTTIIRMTHRVEEIQS 40 (146)
T ss_dssp -CCEEEEEEECSCHH---HHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCEEEEEECCHH---HHHHHHHHHHHCCCCCEEEE
T ss_conf 788997999979899---99999999997799818999
No 233
>1t2m_A AF-6 protein; chromosomal translocation, proto-oncogene, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2ain_A 1xz9_A 2exg_A*
Probab=26.83 E-value=25 Score=13.59 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=28.3
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|+|-|-..++.+||.++ .+|.+.+.
T Consensus 51 L~~GD~Il~INg~~v~~~s~~e~~~llk~~~-~~v~L~V~ 89 (101)
T 1t2m_A 51 LAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVA 89 (101)
T ss_dssp CCSSEEEEEETTEECTTCCHHHHHHHHHSCC-SEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEE
T ss_conf 9999999999999988998999999998499-96999999
No 234
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=26.79 E-value=19 Score=14.41 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=15.8
Q ss_pred EEECCCCEEEEEEECCCCEEE
Q ss_conf 233178707999408984799
Q gi|254780336|r 220 IRDVENGETIVCELQEDGFIS 240 (488)
Q Consensus 220 irdv~PGEiivi~~~~~g~~~ 240 (488)
+.+..+||+++.+++.+|..+
T Consensus 155 ~~~~g~~eii~~di~~dGt~~ 175 (244)
T 1vzw_A 155 LNKEGCARYVVTDIAKDGTLQ 175 (244)
T ss_dssp HHHTTCCCEEEEEC-------
T ss_pred HHHHCCCEEEEEEECCCCCCC
T ss_conf 875166458877762558766
No 235
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419}
Probab=26.76 E-value=25 Score=13.59 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=3.4
Q ss_pred CCCEEEEEHH
Q ss_conf 8932897403
Q gi|254780336|r 357 GKRVVLIDDS 366 (488)
Q Consensus 357 gk~vvlvDDS 366 (488)
+.+|++|||+
T Consensus 5 ~~~ILiVDDd 14 (132)
T 2rdm_A 5 AVTILLADDE 14 (132)
T ss_dssp SCEEEEECSS
T ss_pred CCEEEEEECC
T ss_conf 9989999799
No 236
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=26.72 E-value=25 Score=13.58 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|..|+-|++--|++-|...++++|+.++. +|.+.+.
T Consensus 43 L~~GD~Il~INg~~v~~~s~~ev~~~i~~~~~-~v~L~v~ 81 (85)
T 1rgw_A 43 LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASY-NLSLTLQ 81 (85)
T ss_dssp CCCCSBEEEETTEECTTCCHHHHHHHHTTCSS-CEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE
T ss_conf 99999999899999999979999999975999-7999999
No 237
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=26.52 E-value=25 Score=13.56 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=33.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCC-CCEEEEEECC
Q ss_conf 5338932897403533333888999998539-9789999658
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAG-ASEVHLRVAS 394 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aG-a~evh~ri~s 394 (488)
+-.|.+|+-|+.--|+|.|...++++||.+- -.+|.+.+.-
T Consensus 62 l~~GD~Il~INg~~v~~~t~~eav~~lr~~~~g~~v~L~v~R 103 (129)
T 2kpk_A 62 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 103 (129)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 988989999999987899899999999679999989999994
No 238
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structural genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=26.49 E-value=25 Score=13.55 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=25.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 389328974035333338889999985399789999
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
.|..|+-||+--|+|-|...++++||.++. .|-+.
T Consensus 71 ~GD~Il~VNg~~v~~~s~~ev~~llk~~~~-~v~L~ 105 (114)
T 2gzv_A 71 AGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIH 105 (114)
T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHHHCCS-EEEEE
T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCC-CEEEE
T ss_conf 999999999999789979999999975998-09999
No 239
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=26.23 E-value=4.4 Score=18.93 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=7.7
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8889999985399
Q gi|254780336|r 373 SVKIVQMIRSAGA 385 (488)
Q Consensus 373 ~k~iv~~lr~aGa 385 (488)
.+.+.+++++.|.
T Consensus 303 ~~~i~~l~~~lgl 315 (376)
T 1kq3_A 303 IEEVYSFCEEVGL 315 (376)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999998699
No 240
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=26.12 E-value=25 Score=13.51 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=23.3
Q ss_pred HCCCCEEEE--EHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 338932897--4035333338889999985399
Q gi|254780336|r 355 LAGKRVVLI--DDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 355 i~gk~vvlv--DDSIVRGtT~k~iv~~lr~aGa 385 (488)
+++++++.- ++.+++|+|.+.+++++.+.|-
T Consensus 203 v~~~~i~TPp~~~~iL~GItR~~vie~~~~~g~ 235 (309)
T 1iye_A 203 VKDGVLFTPPFTSSALPGITRDAIIKLAKELGI 235 (309)
T ss_dssp EETTEEEECCGGGTCCCCHHHHHHHHHHHHTTC
T ss_pred ECCCEEEECCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 719999955506643356799999999997399
No 241
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=25.77 E-value=26 Score=13.46 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=30.4
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 338932897403533333888999998539978999965
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
-.|..|+=|++--|+|-|...++++|+.++ ..|.+.+.
T Consensus 45 ~~GD~Il~INg~~v~~~~~~ev~~ll~~~~-~~v~L~v~ 82 (88)
T 1kwa_A 45 HVGDEIREINGISVANQTVEQLQKMLREMR-GSITFKIV 82 (88)
T ss_dssp CTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEEEE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCC-CCEEEEEE
T ss_conf 889999999999977998999999997699-96999998
No 242
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=25.70 E-value=26 Score=13.45 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=12.9
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9328974035333338889999985399
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488)
|||++|||+-.- .+.+..+|.+.|.
T Consensus 2 kriLiVdD~~~~---~~~l~~~L~~~g~ 26 (124)
T 1mb3_A 2 KKVLIVEDNELN---MKLFHDLLEAQGY 26 (124)
T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTC
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCC
T ss_conf 759999589999---9999999998799
No 243
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genomics, structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=25.69 E-value=26 Score=13.45 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=26.1
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|+|-|...++++||.++. .|++.+.
T Consensus 53 L~~GD~Il~VNg~~v~~~s~~~v~~~l~~~~~-~v~L~v~ 91 (102)
T 2i1n_A 53 LGVNDCVLRVNEVDVSEVVHSRAVEALKEAGP-VVRLVVR 91 (102)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHHHSCS-EEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE
T ss_conf 99998999999999889989999999973899-6999999
No 244
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.50 E-value=26 Score=13.43 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=17.0
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 89328974035333338889999985399789999
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
+++|++|||+-..-.+++ .+|.+.|--+|..+
T Consensus 4 ~~~ILiVDD~~~~r~~l~---~~L~~~G~~~v~~a 35 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTK---IIFDNIGEYDFIEV 35 (140)
T ss_dssp CCEEEEECSCHHHHHHHH---HHHHHHCCCEEEEE
T ss_pred CCEEEEEECCHHHHHHHH---HHHHHCCCEEEEEE
T ss_conf 997999949999999999---99986799089998
No 245
>1xfj_A Conserved hypothetical protein; structural genomics, protein structure initiative (PSI), alpha-beta-BETA-alpha, two-domain structure; 1.75A {Caulobacter vibrioides} SCOP: d.194.1.2
Probab=25.24 E-value=15 Score=15.15 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHHHHH---HHHHHHHHCCCC--EEEEEECCCCCCCCCCCCEECCCHHHHHH
Q ss_conf 3333388---899999853997--89999658980588656500589788854
Q gi|254780336|r 368 VRGTTSV---KIVQMIRSAGAS--EVHLRVASPMVLYPDFYGIDIPDPTALLA 415 (488)
Q Consensus 368 VRGtT~k---~iv~~lr~aGa~--evh~ri~sPpi~~pc~yGid~p~~~eLia 415 (488)
=|||... +.++++++.|++ ++++.|+ |-+.||+|-++-.-.+++.+
T Consensus 134 WrG~~~gI~~~~i~~~~~~g~~~~~i~a~IG--P~I~~~cYEV~~ev~~~f~~ 184 (261)
T 1xfj_A 134 WRGALDGVVQSAVDRMVELGASPANITGVVG--PCIGPKSYEVGLEFLHRFEA 184 (261)
T ss_dssp HHHHHHTHHHHHHHHHHHTTCCGGGCEEEEC--SBCCTTTCEEEHHHHHHHHH
T ss_pred CHHHHCCCHHHHHHHHHHCCCCHHHEEEEEC--CCCCCCCCCCCHHHHHHHHH
T ss_conf 5545437689999999981997566489974--51255322128999999987
No 246
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=25.13 E-value=25 Score=13.59 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=35.5
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCCCCC
Q ss_conf 4553389328974035333338889999985399----789999658980588
Q gi|254780336|r 352 RTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA----SEVHLRVASPMVLYP 400 (488)
Q Consensus 352 ~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa----~evh~ri~sPpi~~p 400 (488)
+..-+.++|++|||+-..|--...|...|-+.|- ..+ .|+++|..-.|
T Consensus 263 ~~~~k~~~vv~vEE~~~~gG~gs~i~~~l~e~~~~~l~~~~-~ri~~~d~p~p 314 (338)
T 1qs0_B 263 ESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPI-ERVTGWDTPYP 314 (338)
T ss_dssp HHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCC-EEEECCSSCCC
T ss_pred HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC-EEECCCCCCCC
T ss_conf 98716886999977987788899999999984565379984-89678977899
No 247
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 2ka9_A
Probab=25.12 E-value=26 Score=13.38 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=26.7
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 3893289740353333388899999853997899996589
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sP 395 (488)
.|.+|+-||+--|++-|-..++++||.++ ..|++.+.=|
T Consensus 151 ~GD~Il~VNg~~v~~~s~~e~~~~lk~~~-~~v~L~V~R~ 189 (196)
T 3gsl_A 151 IGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVYLKVAKP 189 (196)
T ss_dssp TTCEEEEETTEECSSCBHHHHHHHHHSCC-EEEEEEEEEE
T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCC-CEEEEEEECC
T ss_conf 89999999999988999999999997599-8699999869
No 248
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=24.96 E-value=27 Score=13.36 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHCCC
Q ss_conf 78999999986498
Q gi|254780336|r 121 NGLTLRKKLISSGA 134 (488)
Q Consensus 121 N~~eLr~~L~~~g~ 134 (488)
+.+.+-+.+.+-|.
T Consensus 84 ~~e~il~k~tELGV 97 (228)
T 1v6z_A 84 KLAEVVRAATELGA 97 (228)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHEEE
T ss_conf 89999999884311
No 249
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=24.91 E-value=27 Score=13.36 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=28.1
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3389328974035333338889999985399789999
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLR 391 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~r 391 (488)
-+++.|++++.+ |..++...++|+++|-+.|+..
T Consensus 72 ~~~~~vv~~c~~---G~rS~~aa~~L~~~G~~nv~~l 105 (134)
T 1vee_A 72 PENTTLYILDKF---DGNSELVAELVALNGFKSAYAI 105 (134)
T ss_dssp GGGCEEEEECSS---STTHHHHHHHHHHHTCSEEEEC
T ss_pred CCCCEEEEECCC---CHHHHHHHHHHHHCCCCCEEEE
T ss_conf 899879997488---5479999999998199757995
No 250
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.85 E-value=27 Score=13.35 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Q ss_conf 53389328974035333338889999985399-7899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri 392 (488)
+-.|.+|+-|++-=|+|-|-..++++||++.+ .+|.+.+
T Consensus 48 L~~GD~Il~VNg~~v~~~t~~evv~~lr~~~~g~~v~L~v 87 (96)
T 1ujv_A 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87 (96)
T ss_dssp CCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf 8999999999999968998999999997299999899999
No 251
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=24.70 E-value=27 Score=13.33 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=29.2
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 338932897403533333888999998539978999965
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
-.|.+|+-|+.--|+|.|...++++||.++. +|.+.+.
T Consensus 41 ~~GD~Il~INg~~v~~~s~~ea~~~i~~~~~-~v~L~V~ 78 (88)
T 3e17_A 41 HEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVL 78 (88)
T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHHTTT-EEEEEEC
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEE
T ss_conf 9899999999999889989999999987999-7999999
No 252
>3mks_A Suppressor of kinetochore protein 1; ubiquitin ligase, protein binding, small molecule complex, ligase/cell cycle; HET: C1C; 2.60A {Saccharomyces cerevisiae} PDB: 1nex_A*
Probab=24.27 E-value=27 Score=13.27 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=14.8
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHC
Q ss_conf 289740353333388899999853
Q gi|254780336|r 360 VVLIDDSIVRGTTSVKIVQMIRSA 383 (488)
Q Consensus 360 vvlvDDSIVRGtT~k~iv~~lr~a 383 (488)
++=+.+ |.|.|++.|+.-+...
T Consensus 51 ~Iplp~--V~~~iL~kVi~~c~~H 72 (169)
T 3mks_A 51 VMPVPN--VRSSVLQKVIEWAEHH 72 (169)
T ss_dssp EEECTT--CCHHHHHHHHHHHHHT
T ss_pred CCCCCC--CCHHHHHHHHHHHHHH
T ss_conf 403898--7899999999999972
No 253
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=24.25 E-value=27 Score=13.27 Aligned_cols=41 Identities=10% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Q ss_conf 53389328974035333338889999985399-789999658
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA-SEVHLRVAS 394 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa-~evh~ri~s 394 (488)
+-.|..|+-|++--|+|-|...++++||.+-. ..|.+.+.-
T Consensus 68 l~~GD~Il~INg~~v~~~~~~ev~~~lk~~~~g~~v~L~v~R 109 (126)
T 1wif_A 68 LQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109 (126)
T ss_dssp SCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEES
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 998999999999997899899999999679999989999994
No 254
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=23.98 E-value=28 Score=13.24 Aligned_cols=52 Identities=8% Similarity=0.243 Sum_probs=35.1
Q ss_pred HHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC--CEEEEEE
Q ss_conf 677765320134324553389328974035333338889999985399--7899996
Q gi|254780336|r 338 HIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA--SEVHLRV 392 (488)
Q Consensus 338 ~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa--~evh~ri 392 (488)
++|..+.+ +++...++..++++|||-.+--...|.++++|...|. +.+-+.+
T Consensus 103 K~r~lAl~---~ALs~k~~~~~l~VVd~~~~~~~KTK~~~~~l~~l~~~~~~~Liv~ 156 (225)
T 1dmg_A 103 KMKKLALR---SALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVL 156 (225)
T ss_dssp HHHHHHHH---HHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEE
T ss_pred HHHHHHHH---HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99999999---9988875279579961454567568999999987386766314531
No 255
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=23.97 E-value=28 Score=13.24 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=14.1
Q ss_pred CCCE-EEECCCCEEEEEEEEEECC
Q ss_conf 7867-8746997199999655087
Q gi|254780336|r 99 VQPL-FADLQVGGIAIAHNGNFTN 121 (488)
Q Consensus 99 ~QPf-~~~~~~g~iaiaHNGnI~N 121 (488)
.+|| ++.+.-|...|+|+|..++
T Consensus 8 ~~~~~f~~s~rG~~~Lv~~Gy~Y~ 31 (87)
T 2rpr_A 8 LRPLEFLRTSLGGRFLVHESFLYR 31 (87)
T ss_dssp SCCCEEEEETTTEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCEEEECCEEEE
T ss_conf 547799986899838998998987
No 256
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=23.90 E-value=28 Score=13.23 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=25.7
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 38932897403533333888999998539978999
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
+++.|+++..| |..+....+.|+++|-+-+++
T Consensus 55 ~~~~iv~~C~~---G~rs~~aa~~L~~~G~~~v~l 86 (103)
T 3eme_A 55 KNEIYYIVCAG---GVRSAKVVEYLEANGIDAVNV 86 (103)
T ss_dssp TTSEEEEECSS---SSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCEEEEECCC---CHHHHHHHHHHHHCCCCEEEE
T ss_conf 79639999499---979999999999859988996
No 257
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=23.41 E-value=28 Score=13.16 Aligned_cols=34 Identities=3% Similarity=0.160 Sum_probs=23.1
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC-EEEEEE
Q ss_conf 3893289740353333388899999853997-899996
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS-EVHLRV 392 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~-evh~ri 392 (488)
+..+|++|||+- ++.+.+.++|++.|.. +|+...
T Consensus 6 ~~~~ILiVDD~~---~~~~~l~~~L~~~g~~~~v~~a~ 40 (143)
T 2qvg_A 6 DKVDILYLEDDE---VDIQSVERVFHKISSLIKIEIAK 40 (143)
T ss_dssp -CCSEEEECCCH---HHHHHHHHHHHHHCTTCCEEEES
T ss_pred CCCEEEEEECCH---HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 899899997999---99999999999769984999989
No 258
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=23.16 E-value=29 Score=13.13 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=27.3
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 3389328974035333338889999985399789
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ev 388 (488)
-.|.+|+=|++--|+|.|....+++||.++....
T Consensus 62 ~~GD~Il~VNg~~v~~~s~~~v~~~lr~~~~~~~ 95 (119)
T 1x6d_A 62 QKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ 95 (119)
T ss_dssp CTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSE
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 8999999999998779979999999973899769
No 259
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 3gj9_A 2kg2_A 3dj3_A
Probab=23.12 E-value=29 Score=13.12 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=18.8
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 38932897403533333888999998539978999965
Q gi|254780336|r 356 AGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 356 ~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
.|..|+-||+-=|.+.|...++++||.+.-..|.+.+.
T Consensus 84 ~GD~Il~VNg~~v~~~t~~e~v~~l~~~~~~~v~l~v~ 121 (139)
T 2vz5_A 84 IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT 121 (139)
T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEE
T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99999998998988999999999997489998999999
No 260
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=23.01 E-value=29 Score=13.11 Aligned_cols=86 Identities=15% Similarity=0.037 Sum_probs=52.2
Q ss_pred HHHHHHHHHHCCCCEEHHEECCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHC
Q ss_conf 47799999981996001001176532101106446777653201343245533893289740353333388899999853
Q gi|254780336|r 304 VPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSA 383 (488)
Q Consensus 304 ~~aA~gya~~~gip~~~~lvkn~y~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~a 383 (488)
.-.|...|+.+|++.-+.-- ..+.+++=.-++|.. +.+.+..++||+|.++=..=+-..-...+++.|+++
T Consensus 490 ~~~~~~v~~~lg~~~p~~~~-~~~~~~~~~~~s~~~--------~~~~~~tl~grKVaILvadGfEe~E~~~~~~~L~~a 560 (715)
T 1sy7_A 490 LGLAQTIAEMVGGEAPTTTN-HPNHGRKTINLSQTE--------FPPATPTIKSRRVAIIIADGYDNVAYDAAYAAISAN 560 (715)
T ss_dssp HHHHHHHHHHHCSCCCSCCS-SCCCCCCCSSCSGGG--------CCCSSSCCTTCEEEEECCTTBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCHHH--------CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 99999999974999998777-899888897734000--------477663456767999816873489999999999977
Q ss_pred CCCEEEEEECCCCCC
Q ss_conf 997899996589805
Q gi|254780336|r 384 GASEVHLRVASPMVL 398 (488)
Q Consensus 384 Ga~evh~ri~sPpi~ 398 (488)
|+.-+.+....-+|.
T Consensus 561 G~~V~vV~~~~g~v~ 575 (715)
T 1sy7_A 561 QAIPLVIGPRRSKVT 575 (715)
T ss_dssp TCEEEEEESCSSCEE
T ss_pred CCEEEEEECCCCCEE
T ss_conf 996799856766377
No 261
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=22.68 E-value=29 Score=13.07 Aligned_cols=136 Identities=20% Similarity=0.246 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HH-----HHHHC------------CCCEEHHEECCCC--CCCEE
Q ss_conf 89999999999998748656772012001204779-99-----99981------------9960010011765--32101
Q gi|254780336|r 273 SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPAA-IG-----YAKES------------GIPFEQGIIRNHY--VGRTF 332 (488)
Q Consensus 273 ~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~aA-~g-----ya~~~------------gip~~~~lvkn~y--~gRtF 332 (488)
.+..+-.+.-..|++..-+-.|+-+|.||-+..+- ++ |++-. |+|...|-...|. .||.-
T Consensus 140 Eler~~r~f~~~L~~~~~~g~d~dvpapDvgt~~~~m~w~~d~y~~~~g~~~~~~~~~vTGKp~~~GGs~~r~~ATg~Gv 219 (501)
T 3mw9_A 140 ELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGV 219 (501)
T ss_dssp HHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999998763036426776755433330076545766531200476667877224688610278899732100478
Q ss_pred EECCHH-HHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCHH
Q ss_conf 106446-7776532013432455338932897403533333888999998539978999965898058865650058978
Q gi|254780336|r 333 IEPSHH-IRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPT 411 (488)
Q Consensus 333 I~p~~~-~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~p~~~ 411 (488)
..-.++ .+..... +..-+...++||+|++-= =|+.-....+.|.+.|||=|-+--.+=-|..| -|+|++...
T Consensus 220 ~~~~~~~~~~~~~~-~~~g~~~~l~g~tvaIQG----fGnVG~~~A~~L~~~GakvVavsD~~G~i~~~--~Gld~~~L~ 292 (501)
T 3mw9_A 220 FHGIENFINEASYM-SILGMTPGFGDKTFVVQG----FGNVGLHSMRYLHRFGAKCITVGESDGSIWNP--DGIDPKELE 292 (501)
T ss_dssp HHHHHHHHTCHHHH-HHTTCCSSSTTCEEEEEC----CSHHHHHHHHHHHHTTCEEEEEECSSCEEECT--TCCCHHHHH
T ss_pred HHHHHHHHHHHHHH-HHCCCCCCCCCCEEEEEC----CCHHHHHHHHHHHHHCCCCEEEECCCCEEEEC--CCCCHHHHH
T ss_conf 99999999986665-440567444685799968----87579999999997025653675378659836--532268999
Q ss_pred HHHH
Q ss_conf 8854
Q gi|254780336|r 412 ALLA 415 (488)
Q Consensus 412 eLia 415 (488)
++..
T Consensus 293 ~~~~ 296 (501)
T 3mw9_A 293 DFKL 296 (501)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 262
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=22.54 E-value=29 Score=13.05 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=24.0
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 33893289740353333388899999853997899
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh 389 (488)
++.+.|+++.+| |..+......|++.|-.-++
T Consensus 51 ~~~~~iv~~C~~---g~rs~~aa~~L~~~G~~~~~ 82 (94)
T 1wv9_A 51 LPRRPLLLVCEK---GLLSQVAALYLEAEGYEAMS 82 (94)
T ss_dssp CCSSCEEEECSS---SHHHHHHHHHHHHHTCCEEE
T ss_pred HCCCCEEEECCC---CCCHHHHHHHHHHCCCCEEE
T ss_conf 034443677799---82499999999986993999
No 263
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=22.54 E-value=29 Score=13.05 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=6.7
Q ss_pred HHHCCEEEEEEC
Q ss_conf 011565999981
Q gi|254780336|r 11 INEKCGVFGILG 22 (488)
Q Consensus 11 ~~~eCGI~Gi~~ 22 (488)
|++-.||+...-
T Consensus 1 Mk~l~Gi~~~~~ 12 (293)
T 1f6k_A 1 MRDLKGIFSALL 12 (293)
T ss_dssp CCCCCEEEEECC
T ss_pred CCCCEEEEEEEE
T ss_conf 998742346366
No 264
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=22.45 E-value=29 Score=13.03 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4035333338889999985399
Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa 385 (488)
++.|..|+|-+.+++++++.|-
T Consensus 268 ~~~iLpGITR~svi~La~~~g~ 289 (372)
T 3dth_A 268 SGSLLPGITRDSLLQLATDAGF 289 (372)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCE
T ss_conf 2441541899999999998791
No 265
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str}
Probab=22.43 E-value=29 Score=13.03 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCCEEEECCHHHHHHHHHHCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEC
Q ss_conf 32101106446777653201343245533893289740353333388899999853997899996589805886565005
Q gi|254780336|r 328 VGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDI 407 (488)
Q Consensus 328 ~gRtFI~p~~~~R~~~v~~K~~~~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPpi~~pc~yGid~ 407 (488)
.|.|+++-.++.++ | +++.+....+-++|+|---.. .+..+-|+++- |..+.|-|+..
T Consensus 3 ~~~~~m~~~~~I~~-----~---L~~~~~~~~l~V~D~S~~H~~-----------h~g~~~Hf~i~---IvS~~F~g~s~ 60 (107)
T 2dhm_A 3 SGSSGMMIRERIEE-----K---LRAAFQPVFLEVVDESYRHNV-----------PAGSESHFKVV---LVSDRFTGERF 60 (107)
T ss_dssp SSSCCCCHHHHHHH-----H---HHHHTCCSCCEEEECCCCCSS-----------CCCSCCCEEEE---EECGGGSSCCS
T ss_pred CCCCCCCHHHHHHH-----H---HHHHCCCCEEEEEECCCCCCC-----------CCCCCCEEEEE---EEECCCCCCCH
T ss_conf 86677789999999-----9---984189857999978776668-----------89997279999---98675368878
Q ss_pred CCHHHHHHCCCCCHHHHHHHHCCCEEEEECHHHHHHH
Q ss_conf 8978885466999889998709977888339899986
Q gi|254780336|r 408 PDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNA 444 (488)
Q Consensus 408 p~~~eLia~~~~~~eei~~~igadsl~yls~e~l~~a 444 (488)
-.|..+|-.- -.+||...|.|=++.-.+.+...+.
T Consensus 61 i~rHR~V~~~--L~~ei~~~IHALsik~~T~~Ew~~~ 95 (107)
T 2dhm_A 61 LNRHRMIYST--LAEELSTTVHALALHTYTIKEWEGL 95 (107)
T ss_dssp SHHHHHHHHH--THHHHHTTCCCCEEEEECHHHHHTS
T ss_pred HHHHHHHHHH--HHHHHCCCCCEEEEEECCHHHHHHC
T ss_conf 9999999999--9999717975368783899999973
No 266
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=22.10 E-value=29 Score=13.07 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHH---HHHHHHCCCCCC----CCCCCCCCHHHHHHHHHHHCCCCEEHHEE
Q ss_conf 3728999999999---999874865677----20120012047799999981996001001
Q gi|254780336|r 270 SGRSIYVSRRNMG---KNLAKESPVIAD----IVVPIPDGGVPAAIGYAKESGIPFEQGII 323 (488)
Q Consensus 270 ~g~~Vy~~R~~lG---~~La~~~~~~~D----iV~~VPdsg~~aA~gya~~~gip~~~~lv 323 (488)
-|..+...|++.| +.||+...+... +--|...-+......+|+.+|++....+.
T Consensus 13 lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~~l~~ia~~lgv~~~~~~~ 73 (88)
T 2wiu_B 13 LANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDA 73 (88)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999859999999786399899999998799999999999999996994086457
No 267
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=21.90 E-value=30 Score=12.96 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=29.8
Q ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 33893289740353333388899999853997899996
Q gi|254780336|r 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 (488)
Q Consensus 355 i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri 392 (488)
-.|.+|+=|+.--+.|.+-..++++|+.+| .+|++.+
T Consensus 126 ~~Gd~il~iNg~~~~~~~~~~v~~ll~~~~-~~v~l~V 162 (166)
T 1w9e_A 126 LTEHNICEINGQNVIGLKDSQIADILSTSG-TVVTITI 162 (166)
T ss_dssp CSSEEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEE
T ss_pred CCCEEHHEECCEECCCCCHHHHHHHHHCCC-CEEEEEE
T ss_conf 424001305894238999999999998699-8699999
No 268
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=21.76 E-value=24 Score=13.66 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=5.7
Q ss_pred HHHHHHHHHHCC
Q ss_conf 888999998539
Q gi|254780336|r 373 SVKIVQMIRSAG 384 (488)
Q Consensus 373 ~k~iv~~lr~aG 384 (488)
++.++..+++..
T Consensus 111 l~~~~~~~~~~~ 122 (216)
T 2q0q_A 111 MSVLVTQVLTSA 122 (216)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999850
No 269
>3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=21.74 E-value=30 Score=12.94 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=9.7
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHCC
Q ss_conf 932897403533333888999998539
Q gi|254780336|r 358 KRVVLIDDSIVRGTTSVKIVQMIRSAG 384 (488)
Q Consensus 358 k~vvlvDDSIVRGtT~k~iv~~lr~aG 384 (488)
|||++|||.-. ..+.+.++|...|
T Consensus 4 krILiVDDd~~---~~~~l~~~L~~~g 27 (132)
T 3crn_A 4 KRILIVDDDTA---ILDSTKQILEFEG 27 (132)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTT
T ss_pred CEEEEEECCHH---HHHHHHHHHHHCC
T ss_conf 88999959999---9999999999869
No 270
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=21.60 E-value=31 Score=12.92 Aligned_cols=29 Identities=14% Similarity=0.421 Sum_probs=15.9
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 32897403533333888999998539978999
Q gi|254780336|r 359 RVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 359 ~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ 390 (488)
||++|||+-.- .+.+.++|.+.|-++|..
T Consensus 8 rILiVDD~~~~---~~~l~~~L~~~g~~~v~~ 36 (129)
T 1p6q_A 8 KVLIVDDQVTS---RLLLGDALQQLGFKQITA 36 (129)
T ss_dssp CEEEECSSHHH---HHHHHHHHHTTTCSCEEC
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf 89999598999---999999999879929999
No 271
>1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B* 1g20_B* 1fp4_B* 1g21_B*
Probab=21.47 E-value=31 Score=12.90 Aligned_cols=89 Identities=19% Similarity=0.087 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHCCCCEEHHEECCCCCC------------CEEEEC-CH---HHHHHHHHHCCCCCHHHHCCCCEEEE
Q ss_conf 012047799999981996001001176532------------101106-44---67776532013432455338932897
Q gi|254780336|r 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVG------------RTFIEP-SH---HIRAFGVKLKHSANRTILAGKRVVLI 363 (488)
Q Consensus 300 Pdsg~~aA~gya~~~gip~~~~lvkn~y~g------------RtFI~p-~~---~~R~~~v~~K~~~~~~~i~gk~vvlv 363 (488)
|.++..+|.-+.+.-|+||... +..+| +.|=.| .+ ++|.+.+ -.+.-.+..+.||++.+.
T Consensus 294 ~~~~~~~a~~le~~~g~p~~~~---~~P~Gi~~Td~fL~~Ia~~~G~~v~~~i~~er~rl~-d~~~d~~~~l~GKrvaI~ 369 (522)
T 1m1n_B 294 PWHLEKTKKFVEGTWKHEVPKL---NIPMGLDWTDEFLMKVSEISGQPIPASLTKERGRLV-DMMTDSHTWLHGKRFALW 369 (522)
T ss_dssp GGGCHHHHHHHHHTTCCCCCCC---CCSBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEC---CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHCCCEEEEE
T ss_conf 8899999999999739853325---886687899999999999969975789999999999-999999998579879998
Q ss_pred EHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 403533333888999998539978999965898
Q gi|254780336|r 364 DDSIVRGTTSVKIVQMIRSAGASEVHLRVASPM 396 (488)
Q Consensus 364 DDSIVRGtT~k~iv~~lr~aGa~evh~ri~sPp 396 (488)
-|. ...-.+.+.|++.|+.=+|+......
T Consensus 370 gd~----~~~~~l~~fL~ElG~~~~~v~~~~~~ 398 (522)
T 1m1n_B 370 GDP----DFVMGLVKFLLELGCEPVHILCHNGN 398 (522)
T ss_dssp CCH----HHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred CCC----HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 984----88999999999869961699957999
No 272
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens}
Probab=21.28 E-value=20 Score=14.25 Aligned_cols=47 Identities=15% Similarity=0.025 Sum_probs=23.3
Q ss_pred HCCCCCCCCCCCH------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 0024743000372------8999999999999874865677201200120477
Q gi|254780336|r 260 VYFARPDSIISGR------SIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPA 306 (488)
Q Consensus 260 IYFarpdS~~~g~------~Vy~~R~~lG~~La~~~~~~~DiV~~VPdsg~~a 306 (488)
+||++|+|.++++ .|.+.-.|-|..+.+-+.+-.-.....|+..-.+
T Consensus 295 ~~f~HPeA~YF~Vg~i~~dq~~dya~r~~~~~~~~~~~l~~~l~y~~~~~~~~ 347 (355)
T 2o2k_A 295 LYFSNLKSKYFAVGKISKDQVEDYALRKNISVAEVEKWLGPILGYDTDKLAAA 347 (355)
T ss_dssp EEBCCTTCCCCCCCCBCHHHHHHHHHHHTCCHHHHHHHTGGGBSCC-------
T ss_pred EEEECCCCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 88877877233057456899999999749999999998501217893055777
No 273
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.17 E-value=30 Score=12.95 Aligned_cols=35 Identities=11% Similarity=0.295 Sum_probs=25.2
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 53389328974035333338889999985399789
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~ev 388 (488)
+-.|.+|+-|++--|++-|...++++||.++--.+
T Consensus 53 L~~GD~Il~VNg~~v~~~~~~~~~~llk~~~~~~l 87 (101)
T 1uez_A 53 LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVL 87 (101)
T ss_dssp CCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 98899999999999999989999999867997999
No 274
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.13 E-value=31 Score=12.85 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=30.4
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCC---EEEEEE
Q ss_conf 533893289740353333388899999853997---899996
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGAS---EVHLRV 392 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~---evh~ri 392 (488)
+-.|..|+=|++--|+|-|....+++||+++-+ ++++.+
T Consensus 60 L~~GD~Il~VNg~~v~~~s~~e~~~llk~~~~~~~~~v~~~~ 101 (109)
T 1wi4_A 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF 101 (109)
T ss_dssp CCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 778999999999998899799999999877799886799998
No 275
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=21.05 E-value=31 Score=12.84 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 33333888999998539978999
Q gi|254780336|r 368 VRGTTSVKIVQMIRSAGASEVHL 390 (488)
Q Consensus 368 VRGtT~k~iv~~lr~aGa~evh~ 390 (488)
-|+||.-..+++.-..|.+|||+
T Consensus 146 ~~~Svg~~ai~lA~~mGfkeIyL 168 (288)
T 2p2v_A 146 KRITSGVYMCAIAIALGYKTIYL 168 (288)
T ss_dssp CCCCHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 67739999999999859988999
No 276
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A
Probab=20.65 E-value=32 Score=12.79 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=12.3
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89328974035333338889999985399
Q gi|254780336|r 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 (488)
Q Consensus 357 gk~vvlvDDSIVRGtT~k~iv~~lr~aGa 385 (488)
+|+|++|||.-.- .+.+..+|+..|-
T Consensus 2 ~krILiVDDd~~~---~~~l~~~L~~~g~ 27 (120)
T 3f6p_A 2 DKKILVVDDEKPI---ADILEFNLRKEGY 27 (120)
T ss_dssp CCEEEEECSCHHH---HHHHHHHHHHTTC
T ss_pred CCCEEEEECCHHH---HHHHHHHHHHCCC
T ss_conf 9719999399999---9999999998899
No 277
>1q60_A General transcription factor II-I; TFII-I, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.288.1.1
Probab=20.42 E-value=31 Score=12.83 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999874865
Q gi|254780336|r 277 SRRNMGKNLAKESPV 291 (488)
Q Consensus 277 ~R~~lG~~La~~~~~ 291 (488)
+..++|+.|....++
T Consensus 16 F~~ky~eALG~~~~V 30 (99)
T 1q60_A 16 FNEKCGEALGLKQAV 30 (99)
T ss_dssp HHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 999999983899850
No 278
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=20.35 E-value=32 Score=12.74 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 5338932897403533333888999998539978999965
Q gi|254780336|r 354 ILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVA 393 (488)
Q Consensus 354 ~i~gk~vvlvDDSIVRGtT~k~iv~~lr~aGa~evh~ri~ 393 (488)
+-.|.+|+-|++--|++-|...++.+|+++ .+.+.+.
T Consensus 53 L~~GD~Il~INg~~v~~~~~~~~~~ll~~~---~~~Ltv~ 89 (94)
T 3kzd_A 53 LKAGDEILEINNRAADALNSSMLKDFLSQP---SLGLLVR 89 (94)
T ss_dssp CCTTCEEEEETTEEGGGCCHHHHHHHHHSS---EEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCC---CCEEEEE
T ss_conf 847899999999998999999999998669---9779999
Done!