RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (488 letters) >gnl|CDD|30383 COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]. Length = 470 Score = 618 bits (1596), Expect = e-178 Identities = 246/476 (51%), Positives = 323/476 (67%), Gaps = 13/476 (2%) Query: 11 INEKCGVFGILGHPD--AATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHF 68 E CGVFGI GH D AA LT GL+ALQHRGQEA GI +G +FH+ + +GLV D F Sbjct: 1 PREMCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVF 60 Query: 69 TKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKK 128 + + L L GN+ IGHVRYST G I N QP + + GGIA+AHNGN N LR++ Sbjct: 61 NERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRE 120 Query: 129 LISSGAIFQSTSDTEVILHLIARS-QKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRD 187 L GAIF +TSD+EV+LHL+AR ++ + + LR V+GAYA++AL + LIA RD Sbjct: 121 LEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIKDGLIAVRD 180 Query: 188 PIGIRPLIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKN 246 P GIRPL++G+L G + SETCAL+I GA+++RDVE GE ++ + DG ++S + Sbjct: 181 PNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDG---LESKQV 237 Query: 247 PSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPA 306 C FEYVYFARPDS+I G S+Y +R+ MG+ LA+E PV AD+V+P+PD G PA Sbjct: 238 AEPPRRAPCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEADVVIPVPDSGRPA 297 Query: 307 AIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDS 366 AIGYA+ SGIP+E+G+I+N YVGRTFI P+ +R GV+LK + R ++ GKRVVL+DDS Sbjct: 298 AIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDS 357 Query: 367 IVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCN 426 IVRGTTS +IVQM+R AGA EVH+R+ASP + YP FYGID+P L+A + +E+ Sbjct: 358 IVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAAN-RTVEEIRK 416 Query: 427 FIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDEEL 482 IG DSL +LS++GL AI G N F CFTG+YPT L D++ E Sbjct: 417 AIGADSLAYLSLEGLIKAI-GRD----NNDFCLACFTGEYPTGLPDEEYLDKLELE 467 >gnl|CDD|35792 KOG0572, KOG0572, KOG0572, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]. Length = 474 Score = 484 bits (1247), Expect = e-137 Identities = 214/468 (45%), Positives = 292/468 (62%), Gaps = 22/468 (4%) Query: 15 CGVFGILGHPDAATLTAIGLH--ALQHRGQEATGIISFNGNK-FHSERHLGLVGDHFTKP 71 CGVFGI+ +A+ L + L ALQHRGQE+ GI++ G + + +GLV D FT+ Sbjct: 2 CGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTE- 60 Query: 72 ETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS 131 + LS LPG++ IGH RYST G + NVQP + G +A+AHNGN N +LR++L+ Sbjct: 61 DKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLE 120 Query: 132 SGAIFQSTSDTEVILHLIARSQKNGSCD-------RFIDSLRHVQGAYAMLALTRTKLIA 184 G ++SD+E+IL LIA + ++ R D + + GAY+++ +T KL A Sbjct: 121 EGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTADKLYA 180 Query: 185 TRDPIGIRPLIMGELHGKP-----IFCSETCALEITGAKYIRDVENGETIVCELQEDGFI 239 RDP G RPL +G + SE+CA GA+Y R+V GE + E+ +G Sbjct: 181 VRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIV--EISRNGVK 238 Query: 240 SIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPI 299 S+D K P + CIFEYVYFARPDSI G+S+Y R G+ LA E+PV AD+V+P+ Sbjct: 239 SVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVYTVRLQCGEQLATEAPVDADVVIPV 298 Query: 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359 PD G AA+GYA +SG+P+++ +IRN YVGRTFIEP+ IR GVK K R GKR Sbjct: 299 PDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKR 358 Query: 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCS 419 VVL+DDSIVRGTTS IV+M+R AGA EVH+R+ASP + YP +YGIDIP L+ANK Sbjct: 359 VVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPIKYPCYYGIDIPTSKELIANK-L 417 Query: 420 SPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467 + E+ IG DS+ +LSV+GL ++ + + +F CFTG YP Sbjct: 418 TVDEIAEHIGADSVAYLSVEGLVDS---VQTEDSTKSFCTACFTGKYP 462 >gnl|CDD|48479 cd00715, GPATase_N, Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.. Length = 252 Score = 345 bits (888), Expect = 1e-95 Identities = 136/257 (52%), Positives = 175/257 (68%), Gaps = 8/257 (3%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 CGVFGI G DAA LT +GL+ALQHRGQE+ GI + +G +FH+ + +GLV D F E L Sbjct: 1 CGVFGIYGAEDAARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFD-EEKL 59 Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134 LPGN+AIGHVRYST G + N QP + +GGIA+AHNGN N LR++L G Sbjct: 60 RRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGR 119 Query: 135 IFQSTSDTEVILHLIARSQKNGSC-DRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRP 193 IFQ+TSD+EVILHLIARS + ID+L V+GAY+++ +T LIA RDP GIRP Sbjct: 120 IFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTADGLIAVRDPHGIRP 179 Query: 194 LIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPE 252 L++G+L + SE+CAL+I GA+++RDVE GE +V + +DG S P +P Sbjct: 180 LVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVID--DDGLESSQRAPKPKPAP- 236 Query: 253 RMCIFEYVYFARPDSII 269 CIFEYVYFARPDS+I Sbjct: 237 --CIFEYVYFARPDSVI 251 >gnl|CDD|48475 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer.. Length = 220 Score = 166 bits (421), Expect = 1e-41 Identities = 80/223 (35%), Positives = 114/223 (51%), Gaps = 11/223 (4%) Query: 15 CGVFGILGHPDAATLTAI----GLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 CG+FGI+G AA+L + GL AL+HRG + GI ++G+ E+ G V D Sbjct: 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSD-VAL 59 Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130 L +A+GHVR +T G N QP ++ G IA+ HNG N LR++L Sbjct: 60 DLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSE--DGRIALVHNGEIYNYRELREELE 117 Query: 131 SSGAIFQSTSDTEVILHLIARS-QKNGSCDRFIDSLRHVQGAYAMLALTR--TKLIATRD 187 + G F+ SD+EVILHL+ R ++ G + D+L+ + G +A +L A RD Sbjct: 118 ARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARD 177 Query: 188 PIGIRPLIMGELH-GKPIFCSETCALEITGAKYIRDVENGETI 229 GIRPL G G +F SE AL K +R + GE + Sbjct: 178 RFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 >gnl|CDD|30798 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]. Length = 597 Score = 117 bits (294), Expect = 9e-27 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 19/223 (8%) Query: 15 CGVFGILG-HPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPET 73 CG+ G +G +A + GL L++RG ++ GI + + +G + + + Sbjct: 2 CGIVGYIGFLREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISN-LEELLN 60 Query: 74 LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133 L G + I H R++T G N P G A+ HNG N L+++L + G Sbjct: 61 KEPLIGGVGIAHTRWATHGGPTRANAHPHSD----GEFAVVHNGIIENFAELKEELEAKG 116 Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRT---KLIATRDPIG 190 +F+S +DTEVI HL+ + L+ ++G+YA+L +L+A R Sbjct: 117 YVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKG-- 174 Query: 191 IRPLIMGELHGKPIFCSETCALEITGAKYIRDV---ENGETIV 230 PL++G G+ S+ AL + R E G+ Sbjct: 175 -SPLVIGVGEGENFLASDVSAL----LNFTRRFVYLEEGDIAK 212 >gnl|CDD|144048 pfam00310, GATase_2, Glutamine amidotransferases class-II. Length = 223 Score = 113 bits (286), Expect = 7e-26 Identities = 57/227 (25%), Positives = 81/227 (35%), Gaps = 36/227 (15%) Query: 15 CGVFG----ILGHPDAATLTAI--GLHALQHRGQ------EATGIISFNGNKFH--SERH 60 CG+ G I G + L L+HRG + GI++ + F SER Sbjct: 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQIPDGFGAPSERR 60 Query: 61 L------GLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIA 114 L G +AI H R+ST G N QP G +A Sbjct: 61 LFVIRKRGEKSIVAEFYLQDERFKSALAIVHTRFSTNGFPSWENAQPFR----REGWVLA 116 Query: 115 HNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNG-------SCDRFIDSLRH 167 HNG LR + + FQS SD+E + +L+ + G F + L Sbjct: 117 HNGEINTLRGLRNWMRAREGKFQSGSDSEALDNLLELLLRAGRSPDMDPEERAFYEYLAG 176 Query: 168 VQ----GAYAMLALTRTKLIATRDPIGIRPLIMGEL-HGKPIFCSET 209 + G A++ + AT D G+RP G G + SE Sbjct: 177 LMEPWDGPAALVFTDGRYVGATLDRNGLRPARYGITEDGLIVVASEA 223 >gnl|CDD|48478 cd00714, GFAT, Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.. Length = 215 Score = 110 bits (277), Expect = 1e-24 Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 18/221 (8%) Query: 15 CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74 CG+ G +G +A + GL L++RG ++ GI + +G V + K Sbjct: 1 CGIVGYIGKREAVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEK 60 Query: 75 SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134 L G++ IGH R++T G+ N P + G IA+ HNG N L+++L + G Sbjct: 61 PL-SGHVGIGHTRWATHGEPTDVNAHPHRSC--DGEIAVVHNGIIENYAELKEELEAKGY 117 Query: 135 IFQSTSDTEVILHLIARSQKNGS--CDRFIDSLRHVQGAYAMLALTRT---KLIATRDPI 189 F+S +DTEVI HLI G + +L+ ++GAYA+ +++ +++A R+ Sbjct: 118 KFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVAARNG- 176 Query: 190 GIRPLIMGELHGKPIFCSETCALEITGAKYIRDV---ENGE 227 PL++G G+ S+ AL ++ R V E+G+ Sbjct: 177 --SPLVIGIGDGENFVASDAPAL----LEHTRRVIYLEDGD 211 >gnl|CDD|48476 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.. Length = 220 Score = 94.9 bits (236), Expect = 5e-20 Identities = 63/205 (30%), Positives = 87/205 (42%), Gaps = 49/205 (23%) Query: 15 CGVFGILG----HPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70 CG+ GI+G D ATL + L AL HRG + +GI + E Sbjct: 1 CGIAGIIGLDGASVDRATLERM-LDALAHRGPDGSGI-------WIDE------------ 40 Query: 71 PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130 +A+GH R S + QP+ ++ G + + NG N LR +L Sbjct: 41 ---------GVALGHRRLSIID--LSGGAQPMVSE--DGRLVLVFNGEIYNYRELRAELE 87 Query: 131 SSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLAL---TRTKLIATRD 187 + G F++ SDTEVILHL + D L + G +A AL + +L RD Sbjct: 88 ALGHRFRTHSDTEVILHLYEEWGE--------DCLERLNGMFA-FALWDKRKRRLFLARD 138 Query: 188 PIGIRPLIMGELHGKPIFCSETCAL 212 GI+PL G G F SE AL Sbjct: 139 RFGIKPLYYGRDGGGLAFASELKAL 163 >gnl|CDD|30716 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]. Length = 542 Score = 92.8 bits (230), Expect = 2e-19 Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 51/234 (21%) Query: 15 CGVFGILGHPDAATLTAIG---LHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKP 71 CG+ GIL + +I L+HRG + +G+ Sbjct: 2 CGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGV------------------------ 37 Query: 72 ETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS 131 + N +GH R S + QP+ + G AI +NG N LRK+L Sbjct: 38 ----WISLNALLGHRRLSIVD--LSGGRQPMIKEG--GKYAIVYNGEIYNVEELRKELRE 89 Query: 132 SGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG--AYAMLALTRTKLIATRDPI 189 +G F++ SDTEVIL L + D + H+ G A+A+ TR KL RDP Sbjct: 90 AGYEFRTYSDTEVILTLYEEWGE--------DCVEHLNGMFAFAIYDETRQKLFLARDPF 141 Query: 190 GIRPLIMGELHGKPIFCSETCAL----EITGAKYIRDVENGETIVCELQEDGFI 239 G++PL + F SE AL + + I+++ G + E + G I Sbjct: 142 GVKPLYYTSKNENLAFASEIKALLAHPVVRFLRDIKELPPGH--LLEFTDGGLI 193 >gnl|CDD|73286 cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.. Length = 249 Score = 79.9 bits (197), Expect = 2e-15 Identities = 60/257 (23%), Positives = 93/257 (36%), Gaps = 48/257 (18%) Query: 15 CGVFGIL---GHPDAATLTAIGLHALQHRG-QEATGIISFNGNK---FHSERHLGL---- 63 CG+FGI+ G P L L A+Q RG + G + + S + + + Sbjct: 1 CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGV 60 Query: 64 -----VGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGN 118 + + L G I H R T P +G IA+ HNG Sbjct: 61 GYPEDIARRYD----LEEYKGYHWIAHTRQPTNSAVWWYGAHPFS----IGDIAVVHNGE 112 Query: 119 FTNGLTLRKKLISSGAIFQSTSDTEVILHLIA-RSQKNGSCD------------------ 159 +N + R+ L G F++ +DTEVI + + +K G Sbjct: 113 ISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLL 172 Query: 160 --RFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCAL-EITG 216 R L + G + ++ T I RD I +RP ++ E SE CA+ EI Sbjct: 173 ALRLTYRLADLDGPFTIIVGTPDGFIVIRDRIKLRPAVVAETDDYVAIASEECAIREIPD 232 Query: 217 AKYIRDVE--NGETIVC 231 + E GE ++ Sbjct: 233 RDNAKVWEPRPGEYVIW 249 >gnl|CDD|143924 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This family includes a range of diverse phosphoribosyl transferase enzymes. This family includes: Adenine phosphoribosyltransferase EC:2.4.2.7. Hypoxanthine-guanine-xanthine phosphoribosyltransferase. Hypoxanthine phosphoribosyltransferase EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyltransferase EC:2.4.2.10. Uracil phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis, At the very N-terminus of this domain is the ATP-GTP-binding domain. Length = 123 Score = 68.5 bits (168), Expect = 4e-12 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%) Query: 272 RSIYVS---RRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN 325 ++ + R + + LA+ E + D++V I GG+P A A+E GIP R Sbjct: 1 SNLLLDPEELRELIEALAEKIREEGIDPDVIVGIARGGIPLATALARELGIPLVLVRKRI 60 Query: 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 + + +L GKRV+++DD + G T V++++ AGA Sbjct: 61 SLPSSIKSRGGESVTLLSRLPE------LLKGKRVLIVDDVLDTGGTLRAAVELLKKAGA 114 Query: 386 SEVHLRV 392 V + V Sbjct: 115 KVVGVAV 121 >gnl|CDD|36482 KOG1268, KOG1268, KOG1268, Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]. Length = 670 Score = 64.9 bits (158), Expect = 4e-11 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 26/211 (12%) Query: 15 CGVFGILGHPDAATLTAI------GLHALQHRGQEATG--IISFNGNKFHSERHLGLVG- 65 CG+FG T I GL L++RG ++ G I + G V Sbjct: 2 CGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSS 61 Query: 66 -DHFTKPETLSL---LPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTN 121 + L+L + I H R++T G N P +D + HNG TN Sbjct: 62 LKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPS-NEFVVVHNGIITN 120 Query: 122 GLTLRKKLISSGAIFQSTSDTEVI----LHLIARSQKNGSCDRFIDS-LRHVQGAYAMLA 176 L+ L G +F+S +DTE I H+ S ++ ++ L+ ++GA+ +L Sbjct: 121 FKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLLF 180 Query: 177 LTR---TKLIATRDPIGIRPLIMG-ELHGKP 203 + +++A R PL++G + K Sbjct: 181 KSSHFPGEVVAARKG---SPLLIGVKSKTKL 208 >gnl|CDD|35791 KOG0571, KOG0571, KOG0571, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]. Length = 543 Score = 59.9 bits (145), Expect = 1e-09 Identities = 57/203 (28%), Positives = 81/203 (39%), Gaps = 43/203 (21%) Query: 15 CGVFGILGHPDAATLTAIGLHA---LQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKP 71 CG+ +LGH D+ L ++HRG + +G+ N N ER L +V Sbjct: 2 CGILAVLGHEDSEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHER-LAIVD------ 54 Query: 72 ETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS 131 T+G Q I + G + NG N LR+ Sbjct: 55 -----------------PTSGAQPIVG--------EDGTYVVTVNGEIYNHKKLREHCKD 89 Query: 132 SGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGI 191 FQ+ SD EVI+HL + ++ I L V A+ +L K++A RDPIG+ Sbjct: 90 FE--FQTGSDCEVIIHLYEK----HGGEQAICMLDGVF-AFVLLDTKDDKVVAARDPIGV 142 Query: 192 RPLIMG-ELHGKPIFCSETCALE 213 PL G + G F SE LE Sbjct: 143 TPLYYGWDSDGSVYFASEMKCLE 165 >gnl|CDD|30849 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]. Length = 179 Score = 48.8 bits (116), Expect = 4e-06 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 293 ADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352 D +V I G+P A A E G+PF + + + + + +G + Sbjct: 54 IDKIVTIEARGIPLAAAVALELGVPFVP-VRKKGKLPEESVV-ETYYLEYGSETLELHKD 111 Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 + G RV+++DD + G T++ +++++ AGA Sbjct: 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGA 144 >gnl|CDD|48481 cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.. Length = 257 Score = 46.2 bits (109), Expect = 2e-05 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 5/104 (4%) Query: 83 IGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIF-QSTSD 141 + HVR +T G + N P F G AHNG LR++L+ T+D Sbjct: 84 LAHVRAATVGPVSLENCHP-FTR---GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTD 139 Query: 142 TEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIAT 185 +E+ L+ + L + LA Sbjct: 140 SELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLN 183 >gnl|CDD|30416 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport and metabolism]. Length = 371 Score = 43.4 bits (102), Expect = 1e-04 Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 25/137 (18%) Query: 79 GNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQS 138 +A+ H R+ST P F L HNG R L + G F+S Sbjct: 202 SAIALVHTRFSTNTFPSWPLAHP-FRLL-------VHNGEINTYGGNRNWLEARGYKFES 253 Query: 139 TSDTEVILHLIARSQKNGSCDRFIDSL--------RHVQGAYAML---------ALTRTK 181 +D EV+ L+ + GS +D+ R + A +L + Sbjct: 254 PTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEG 313 Query: 182 LIATRDPIGIRPLIMGE 198 D + G Sbjct: 314 RAFYEDHSALMEPWDGP 330 >gnl|CDD|31197 COG0856, COG0856, Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]. Length = 203 Score = 42.2 bits (99), Expect = 3e-04 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 10/129 (7%) Query: 267 SIISGRSIYVSRRNMGKN---LAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGII 323 S+ + I + R++GK+ L S +AD+++ V +G A SG+P + Sbjct: 47 SVPAPVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAI-SGVPL--ATM 103 Query: 324 RNHYVGRTFI--EPSHHIRAFGVKLKH--SANRTILAGKRVVLIDDSIVRGTTSVKIVQM 379 + +G+ P H + G S+N + GKR V++DD I G+T + ++ Sbjct: 104 VAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQ 163 Query: 380 IRSAGASEV 388 ++ G V Sbjct: 164 LKEEGGKPV 172 >gnl|CDD|32109 COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]. Length = 220 Score = 39.1 bits (91), Expect = 0.003 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 38/156 (24%) Query: 275 YVSRRNMGKNLAKESPVIAD----IVVPIPDGGVPAAIGYAKESGIPFEQGIIR------ 324 + R + G+ LA+E + D IV+ +P GGVP A A+ G P + I+R Sbjct: 4 FRDRTDAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPG 63 Query: 325 -----------------NHYVGRTFIEPSHHIRAFGVKLKHSANRTI-----------LA 356 N+ V R+ +I A + + R L Sbjct: 64 NPELAIGAVAEGGDVVLNYDVVRSLGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLK 123 Query: 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392 G+ V+L+DD I G T V+ +R+ G E+ + V Sbjct: 124 GRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV 159 >gnl|CDD|30810 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]. Length = 314 Score = 38.2 bits (89), Expect = 0.005 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 15/104 (14%) Query: 287 KESPVIADIVVPIPD-GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVK 345 +E + D VV PD GGV A A G P I+ V+ Sbjct: 157 REKYDLDDPVVVSPDKGGVKRARALADRLGAPL------------AIIDKRRDSSPNVVE 204 Query: 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389 + + + GK VV++DD I G T K + ++ GA +V+ Sbjct: 205 VMNLIGD--VEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVY 246 >gnl|CDD|30470 COG0121, COG0121, Predicted glutamine amidotransferase [General function prediction only]. Length = 252 Score = 36.9 bits (85), Expect = 0.011 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 4/117 (3%) Query: 77 LPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTN---GLTLRKKLISSG 133 + + I HVR +T G+ + N P +L AHNG + + + Sbjct: 68 IKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLEPVGYT 127 Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIG 190 + + K G F +R G + L L A Sbjct: 128 DSEAAFCGITDSERIFLLILKPGLDALFQAEIR-ALGLFNTLLSDGNYLFALCSTAL 183 >gnl|CDD|30809 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]. Length = 201 Score = 36.4 bits (84), Expect = 0.016 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 24/97 (24%) Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHH-----IRAFGVKLKH 348 D+V GG+P A A +R E H I VK Sbjct: 63 DVVAGPALGGIPLAAATALALAHLPPMAYVR--------KEAKDHGTGGLIEGGEVK--- 111 Query: 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 G++VV+++D I G + ++ V+ +R AGA Sbjct: 112 --------GEKVVVVEDVITTGGSILEAVEALREAGA 140 >gnl|CDD|30979 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]. Length = 178 Score = 36.2 bits (84), Expect = 0.022 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDIP 408 + G+ V++++D I G T K+ +++ GA V + + + D+ G ++P Sbjct: 91 IKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERRKVDIEADYVGFEVP 150 Query: 409 D 409 D Sbjct: 151 D 151 >gnl|CDD|31242 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]. Length = 225 Score = 35.0 bits (80), Expect = 0.052 Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 18/172 (10%) Query: 232 ELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPV 291 L + P + Y R +IS + ++ K LA+ Sbjct: 47 PLSSHACRCGECLAKPPPFERLRSLGSYNGPLR--ELISQLK-FQGDLDLAKLLARLLAK 103 Query: 292 IADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIR----AFGVKLK 347 D + PD VP + ++ F Q + + R +P R + LK Sbjct: 104 ALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLK 163 Query: 348 HSANRTILAG-----------KRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388 R L G K V+L+DD G T + +++R AGA V Sbjct: 164 ALERRRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRV 215 >gnl|CDD|38577 KOG3367, KOG3367, KOG3367, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]. Length = 216 Score = 31.7 bits (71), Expect = 0.49 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Query: 343 GVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPM 396 +++ + + L GK V++++D + G T ++ +++ S V + R + Sbjct: 111 DIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRTRRSV 170 Query: 397 VLYPDFYGIDIPD 409 PD+ G +IPD Sbjct: 171 GYKPDYVGFEIPD 183 >gnl|CDD|34826 COG5229, LOC7, Chromosome condensation complex Condensin, subunit H [Chromatin structure and dynamics / Cell division and chromosome partitioning]. Length = 662 Score = 31.0 bits (69), Expect = 0.71 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 6/107 (5%) Query: 181 KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFIS 240 K D G + L++ L + + I+D EN + +E+ I Sbjct: 141 KRCVDFDEGGAKSLLLNTL------NIDNTKRLYFDSSPIKDTENVGQGKLQRKEEELIE 194 Query: 241 IDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAK 287 DS + + DS+IS S+ +G + K Sbjct: 195 RDSLVDDLMIDSQSLGISSNDSTVNDSVISAPSMEDEILGLGMDFIK 241 >gnl|CDD|147583 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown. Length = 244 Score = 30.7 bits (69), Expect = 0.90 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 4/67 (5%) Query: 196 MGEL--HGKPIFCSETCALEITGAKYIRDVENGETIVCELQE-DGFISIDSYKNPSTSPE 252 M EL K LE+ +R V G + C L E + Y+ S S Sbjct: 1 MDELPEDVKSFLRQHPF-LELVENGKVRCVLTGHELPCRLPELQSYTRGKKYQRLSRSSP 59 Query: 253 RMCIFEY 259 F + Sbjct: 60 PFNYFSF 66 >gnl|CDD|133135 cd06604, GH31_glucosidase_II_MalA, Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source. Length = 339 Score = 30.2 bits (69), Expect = 1.4 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 9/44 (20%) Query: 296 VVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYV----GRTFIEP 335 VV I D GV GY +E+G+ +++V G +I Sbjct: 80 VVTIIDPGVKVDPGYD-----VYEEGLENDYFVKDPDGELYIGR 118 >gnl|CDD|37515 KOG2304, KOG2304, KOG2304, 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]. Length = 298 Score = 29.9 bits (67), Expect = 1.6 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 15/68 (22%) Query: 406 DIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGD 465 DI L A P E+ +++G+D+ F+ +DG + P++ FA Sbjct: 227 DIDTAMKLGAGYPMGPFELADYVGLDTCKFV-MDGWHE------GYPEDSLFA------- 272 Query: 466 YPTPLVDK 473 P+PL+DK Sbjct: 273 -PSPLLDK 279 >gnl|CDD|146351 pfam03666, NPR3, Nitrogen Permease regulator of amino acid transport activity 3. This family, also known in yeasts as Rmd11, complexes with NPR2, pfam06218. This complex heterodimer is responsible for inactivating TORC1. an evolutionarily conserved protein complex that controls cell size via nutritional input signals, specifically, in response to amino acid starvation. Length = 424 Score = 29.7 bits (67), Expect = 2.1 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%) Query: 410 PTALLANKCSSPQEMCN--F-IGVDSLGFLS 437 T LA S P+EMCN F + +D L F+ Sbjct: 3 DTDFLAEILSPPREMCNTRFELKIDDLRFVG 33 >gnl|CDD|32417 COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only]. Length = 192 Score = 29.6 bits (66), Expect = 2.1 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 10/134 (7%) Query: 279 RNMGKNLA---KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEP 335 + + LA + S D++V I GG+ A + G+ I HY + Sbjct: 13 HRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDG 72 Query: 336 SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395 K+K+ L+GK+V+++DD + G T ++ ++ +EV V Sbjct: 73 -------EAKVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQY 125 Query: 396 MVLYPDFYGIDIPD 409 + Sbjct: 126 KKSPDYYGEEVTAW 139 >gnl|CDD|143922 pfam00154, RecA, recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. Length = 322 Score = 28.8 bits (65), Expect = 3.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 137 QSTSDTEVILHLIARSQKNGSCDRFID 163 +S+ T + LH IA +QK G FID Sbjct: 61 ESSGKTTLALHAIAEAQKAGGTAAFID 87 >gnl|CDD|112704 pfam03904, DUF334, Domain of unknown function (DUF334). Staphylococcus aureus plasmid proteins with no characterized function. Length = 229 Score = 28.4 bits (63), Expect = 4.5 Identities = 13/20 (65%), Positives = 14/20 (70%) Query: 428 IGVDSLGFLSVDGLYNAICG 447 IG D +GFL VD L NAI G Sbjct: 169 IGRDFMGFLHVDTLQNAIAG 188 >gnl|CDD|34873 COG5276, COG5276, Uncharacterized conserved protein [Function unknown]. Length = 370 Score = 28.4 bits (63), Expect = 4.8 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 212 LEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISG 271 L G Y V V +L +DGF+ +D +PS SP+ + D ISG Sbjct: 125 LNTDGYAYGVYVSGNYAYVADL-DDGFLIVD-VSDPS-SPQLAGRYALPGGDTHDVAISG 181 Query: 272 RSIYVSRRNMG 282 YV+ R+ G Sbjct: 182 NYAYVAWRDGG 192 >gnl|CDD|36924 KOG1712, KOG1712, KOG1712, Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]. Length = 183 Score = 27.9 bits (62), Expect = 6.2 Identities = 11/33 (33%), Positives = 18/33 (54%) Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385 I G+RVV++DD + G T +++ GA Sbjct: 118 AIKPGQRVVVVDDLLATGGTLAAATELLERVGA 150 >gnl|CDD|29984 cd00983, recA, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.. Length = 325 Score = 27.5 bits (61), Expect = 7.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 137 QSTSDTEVILHLIARSQKNGSCDRFID 163 +S+ T + LH IA +QK G FID Sbjct: 64 ESSGKTTLALHAIAEAQKLGGTVAFID 90 >gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants. Length = 473 Score = 27.5 bits (62), Expect = 7.9 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 17/69 (24%) Query: 133 GAIFQSTSDTEVILHLI-----ARSQKNGSCDRFIDSL----RH-----VQG-AYAMLAL 177 +IF T D L N C R D R QG A+ ++ Sbjct: 407 ASIF--TKDINKARKLADALEVGTVNINSKCQRGPDHFPFLGRKDSGIGTQGIGDALRSM 464 Query: 178 TRTKLIATR 186 TR K I Sbjct: 465 TRRKGIVIN 473 >gnl|CDD|113048 pfam04261, Dyp_perox, Dyp-type peroxidase family. This family of dye-decolourising peroxidases lack a typical heme-binding region. Length = 311 Score = 27.3 bits (61), Expect = 8.7 Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 7/41 (17%) Query: 308 IGYAKESGIPFEQGII-RNHYVGRTFIEPSHHIRAFGVKLK 347 IG K G + + + +V + + G LK Sbjct: 209 IGRRKSDGAELDGDVKPADSHVRLA------NPKEDGKGLK 243 >gnl|CDD|29994 cd01128, rho_factor, Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.. Length = 249 Score = 27.5 bits (61), Expect = 9.2 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 320 QGIIRNHYVGRTFIEP-SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVR 369 Q ++ + TF EP H++ + L+ A R + GK VV++ DSI R Sbjct: 65 QRSVKGEVIASTFDEPPERHVQVAEMVLE-KAKRLVEHGKDVVILLDSITR 114 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0591 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,029,496 Number of extensions: 332315 Number of successful extensions: 716 Number of sequences better than 10.0: 1 Number of HSP's gapped: 674 Number of HSP's successfully gapped: 50 Length of query: 488 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 390 Effective length of database: 4,146,055 Effective search space: 1616961450 Effective search space used: 1616961450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.8 bits)