RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (488 letters)



>gnl|CDD|30383 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
           amidotransferase [Nucleotide transport and metabolism].
          Length = 470

 Score =  618 bits (1596), Expect = e-178
 Identities = 246/476 (51%), Positives = 323/476 (67%), Gaps = 13/476 (2%)

Query: 11  INEKCGVFGILGHPD--AATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHF 68
             E CGVFGI GH D  AA LT  GL+ALQHRGQEA GI   +G +FH+ + +GLV D F
Sbjct: 1   PREMCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVF 60

Query: 69  TKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKK 128
            + + L  L GN+ IGHVRYST G   I N QP + +   GGIA+AHNGN  N   LR++
Sbjct: 61  NERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRE 120

Query: 129 LISSGAIFQSTSDTEVILHLIARS-QKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRD 187
           L   GAIF +TSD+EV+LHL+AR   ++   +   + LR V+GAYA++AL +  LIA RD
Sbjct: 121 LEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIKDGLIAVRD 180

Query: 188 PIGIRPLIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKN 246
           P GIRPL++G+L  G  +  SETCAL+I GA+++RDVE GE ++  +  DG   ++S + 
Sbjct: 181 PNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDG---LESKQV 237

Query: 247 PSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPIPDGGVPA 306
                   C FEYVYFARPDS+I G S+Y +R+ MG+ LA+E PV AD+V+P+PD G PA
Sbjct: 238 AEPPRRAPCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEADVVIPVPDSGRPA 297

Query: 307 AIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDS 366
           AIGYA+ SGIP+E+G+I+N YVGRTFI P+  +R  GV+LK +  R ++ GKRVVL+DDS
Sbjct: 298 AIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDS 357

Query: 367 IVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCSSPQEMCN 426
           IVRGTTS +IVQM+R AGA EVH+R+ASP + YP FYGID+P    L+A    + +E+  
Sbjct: 358 IVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAAN-RTVEEIRK 416

Query: 427 FIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYPTPLVDKQSQHNDEEL 482
            IG DSL +LS++GL  AI G      N  F   CFTG+YPT L D++     E  
Sbjct: 417 AIGADSLAYLSLEGLIKAI-GRD----NNDFCLACFTGEYPTGLPDEEYLDKLELE 467


>gnl|CDD|35792 KOG0572, KOG0572, KOG0572, Glutamine phosphoribosylpyrophosphate
           amidotransferase [Nucleotide transport and metabolism].
          Length = 474

 Score =  484 bits (1247), Expect = e-137
 Identities = 214/468 (45%), Positives = 292/468 (62%), Gaps = 22/468 (4%)

Query: 15  CGVFGILGHPDAATLTAIGLH--ALQHRGQEATGIISFNGNK-FHSERHLGLVGDHFTKP 71
           CGVFGI+   +A+ L  + L   ALQHRGQE+ GI++  G    +  + +GLV D FT+ 
Sbjct: 2   CGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTE- 60

Query: 72  ETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS 131
           + LS LPG++ IGH RYST G   + NVQP   +   G +A+AHNGN  N  +LR++L+ 
Sbjct: 61  DKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLE 120

Query: 132 SGAIFQSTSDTEVILHLIARSQKNGSCD-------RFIDSLRHVQGAYAMLALTRTKLIA 184
            G    ++SD+E+IL LIA + ++           R  D +  + GAY+++ +T  KL A
Sbjct: 121 EGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTADKLYA 180

Query: 185 TRDPIGIRPLIMGELHGKP-----IFCSETCALEITGAKYIRDVENGETIVCELQEDGFI 239
            RDP G RPL +G           +  SE+CA    GA+Y R+V  GE +  E+  +G  
Sbjct: 181 VRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIV--EISRNGVK 238

Query: 240 SIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPVIADIVVPI 299
           S+D  K P  +    CIFEYVYFARPDSI  G+S+Y  R   G+ LA E+PV AD+V+P+
Sbjct: 239 SVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVYTVRLQCGEQLATEAPVDADVVIPV 298

Query: 300 PDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKR 359
           PD G  AA+GYA +SG+P+++ +IRN YVGRTFIEP+  IR  GVK K    R    GKR
Sbjct: 299 PDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKR 358

Query: 360 VVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASPMVLYPDFYGIDIPDPTALLANKCS 419
           VVL+DDSIVRGTTS  IV+M+R AGA EVH+R+ASP + YP +YGIDIP    L+ANK  
Sbjct: 359 VVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPIKYPCYYGIDIPTSKELIANK-L 417

Query: 420 SPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGDYP 467
           +  E+   IG DS+ +LSV+GL ++   +  +    +F   CFTG YP
Sbjct: 418 TVDEIAEHIGADSVAYLSVEGLVDS---VQTEDSTKSFCTACFTGKYP 462


>gnl|CDD|48479 cd00715, GPATase_N, Glutamine amidotransferases class-II
           (GN-AT)_GPAT- type. This domain is found at the
           N-terminus of  glutamine phosphoribosylpyrophosphate
           (Prpp) amidotransferase (GPATase) . The glutaminase
           domain catalyzes amide nitrogen transfer from glutamine
           to the appropriate substrate. In this process, glutamine
           is hydrolyzed to glutamic acid and ammonia. GPATase
           catalyzes the first step in purine biosynthesis, an
           amide transfer from glutamine to PRPP,  resulting in
           phosphoribosylamine, pyrophosphate and glutamate.
           GPATase crystalizes as a homotetramer, but can also
           exist as a homdimer..
          Length = 252

 Score =  345 bits (888), Expect = 1e-95
 Identities = 136/257 (52%), Positives = 175/257 (68%), Gaps = 8/257 (3%)

Query: 15  CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
           CGVFGI G  DAA LT +GL+ALQHRGQE+ GI + +G +FH+ + +GLV D F   E L
Sbjct: 1   CGVFGIYGAEDAARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFD-EEKL 59

Query: 75  SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134
             LPGN+AIGHVRYST G   + N QP   +  +GGIA+AHNGN  N   LR++L   G 
Sbjct: 60  RRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGR 119

Query: 135 IFQSTSDTEVILHLIARSQKNGSC-DRFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRP 193
           IFQ+TSD+EVILHLIARS       +  ID+L  V+GAY+++ +T   LIA RDP GIRP
Sbjct: 120 IFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTADGLIAVRDPHGIRP 179

Query: 194 LIMGEL-HGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPE 252
           L++G+L     +  SE+CAL+I GA+++RDVE GE +V +  +DG  S      P  +P 
Sbjct: 180 LVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVID--DDGLESSQRAPKPKPAP- 236

Query: 253 RMCIFEYVYFARPDSII 269
             CIFEYVYFARPDS+I
Sbjct: 237 --CIFEYVYFARPDSVI 251


>gnl|CDD|48475 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
           The glutaminase domain catalyzes an amide nitrogen
           transfer from glutamine to the appropriate substrate. In
           this process, glutamine is hydrolyzed to glutamic acid
           and ammonia. This domain is related to members of the
           Ntn (N-terminal nucleophile) hydrolase superfamily and
           is found at the N-terminus of enzymes such as
           glucosamine-fructose 6-phosphate synthase (GLMS or
           GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
           amidotransferase (GPATase), asparagine synthetase B
           (AsnB), beta lactam synthetase (beta-LS) and glutamate
           synthase (GltS). GLMS catalyzes the formation of
           glucosamine 6-phosphate from fructose 6-phosphate and
           glutamine in amino sugar synthesis. GPATase catalyzes
           the first step in purine biosynthesis, an amide transfer
           from glutamine to PRPP, resulting in
           phosphoribosylamine, pyrophosphate and glutamate.
           Asparagine synthetase B  synthesizes asparagine from
           aspartate and glutamine. Beta-LS catalyzes the formation
           of the beta-lactam ring in the beta-lactamase inhibitor
           clavulanic acid. GltS synthesizes L-glutamate from
           2-oxoglutarate and L-glutamine. These enzymes are
           generally dimers, but GPATase also exists as a
           homotetramer..
          Length = 220

 Score =  166 bits (421), Expect = 1e-41
 Identities = 80/223 (35%), Positives = 114/223 (51%), Gaps = 11/223 (4%)

Query: 15  CGVFGILGHPDAATLTAI----GLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
           CG+FGI+G   AA+L  +    GL AL+HRG +  GI  ++G+    E+  G V D    
Sbjct: 1   CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSD-VAL 59

Query: 71  PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130
                 L   +A+GHVR +T G     N QP  ++   G IA+ HNG   N   LR++L 
Sbjct: 60  DLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSE--DGRIALVHNGEIYNYRELREELE 117

Query: 131 SSGAIFQSTSDTEVILHLIARS-QKNGSCDRFIDSLRHVQGAYAMLALTR--TKLIATRD 187
           + G  F+  SD+EVILHL+ R  ++ G  +   D+L+ + G +A         +L A RD
Sbjct: 118 ARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARD 177

Query: 188 PIGIRPLIMGELH-GKPIFCSETCALEITGAKYIRDVENGETI 229
             GIRPL  G    G  +F SE  AL     K +R +  GE +
Sbjct: 178 RFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220


>gnl|CDD|30798 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains
           amidotransferase and phosphosugar isomerase domains
           [Cell envelope biogenesis, outer membrane].
          Length = 597

 Score =  117 bits (294), Expect = 9e-27
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 19/223 (8%)

Query: 15  CGVFGILG-HPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPET 73
           CG+ G +G   +A  +   GL  L++RG ++ GI        +  + +G + +   +   
Sbjct: 2   CGIVGYIGFLREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISN-LEELLN 60

Query: 74  LSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSG 133
              L G + I H R++T G     N  P       G  A+ HNG   N   L+++L + G
Sbjct: 61  KEPLIGGVGIAHTRWATHGGPTRANAHPHSD----GEFAVVHNGIIENFAELKEELEAKG 116

Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRT---KLIATRDPIG 190
            +F+S +DTEVI HL+         +     L+ ++G+YA+L        +L+A R    
Sbjct: 117 YVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKG-- 174

Query: 191 IRPLIMGELHGKPIFCSETCALEITGAKYIRDV---ENGETIV 230
             PL++G   G+    S+  AL      + R     E G+   
Sbjct: 175 -SPLVIGVGEGENFLASDVSAL----LNFTRRFVYLEEGDIAK 212


>gnl|CDD|144048 pfam00310, GATase_2, Glutamine amidotransferases class-II. 
          Length = 223

 Score =  113 bits (286), Expect = 7e-26
 Identities = 57/227 (25%), Positives = 81/227 (35%), Gaps = 36/227 (15%)

Query: 15  CGVFG----ILGHPDAATLTAI--GLHALQHRGQ------EATGIISFNGNKFH--SERH 60
           CG+ G    I G      +      L  L+HRG       +  GI++   + F   SER 
Sbjct: 1   CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQIPDGFGAPSERR 60

Query: 61  L------GLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIA 114
           L      G                  +AI H R+ST G     N QP        G  +A
Sbjct: 61  LFVIRKRGEKSIVAEFYLQDERFKSALAIVHTRFSTNGFPSWENAQPFR----REGWVLA 116

Query: 115 HNGNFTNGLTLRKKLISSGAIFQSTSDTEVILHLIARSQKNG-------SCDRFIDSLRH 167
           HNG       LR  + +    FQS SD+E + +L+    + G           F + L  
Sbjct: 117 HNGEINTLRGLRNWMRAREGKFQSGSDSEALDNLLELLLRAGRSPDMDPEERAFYEYLAG 176

Query: 168 VQ----GAYAMLALTRTKLIATRDPIGIRPLIMGEL-HGKPIFCSET 209
           +     G  A++      + AT D  G+RP   G    G  +  SE 
Sbjct: 177 LMEPWDGPAALVFTDGRYVGATLDRNGLRPARYGITEDGLIVVASEA 223


>gnl|CDD|48478 cd00714, GFAT, Glutamine amidotransferases class-II
           (Gn-AT)_GFAT-type. This domain is found at the
           N-terminus of glucosamine-6P synthase (GlmS, or GFAT in
           humans).  The glutaminase domain catalyzes amide
           nitrogen transfer from glutamine to the appropriate
           substrate. In this process, glutamine is hydrolyzed to
           glutamic acid and ammonia. In humans, GFAT catalyzes the
           first and rate-limiting step of hexosamine metabolism,
           the conversion of D-fructose-6P (Fru6P) into
           D-glucosamine-6P using L-glutamine as a nitrogen source.
            The end product of this pathway, UDP-N-acetyl
           glucosamine, is a major building block of the bacterial
           peptidoglycan and fungal chitin..
          Length = 215

 Score =  110 bits (277), Expect = 1e-24
 Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 18/221 (8%)

Query: 15  CGVFGILGHPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKPETL 74
           CG+ G +G  +A  +   GL  L++RG ++ GI           + +G V +   K    
Sbjct: 1   CGIVGYIGKREAVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEK 60

Query: 75  SLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGA 134
            L  G++ IGH R++T G+    N  P  +    G IA+ HNG   N   L+++L + G 
Sbjct: 61  PL-SGHVGIGHTRWATHGEPTDVNAHPHRSC--DGEIAVVHNGIIENYAELKEELEAKGY 117

Query: 135 IFQSTSDTEVILHLIARSQKNGS--CDRFIDSLRHVQGAYAMLALTRT---KLIATRDPI 189
            F+S +DTEVI HLI      G    +    +L+ ++GAYA+  +++    +++A R+  
Sbjct: 118 KFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVAARNG- 176

Query: 190 GIRPLIMGELHGKPIFCSETCALEITGAKYIRDV---ENGE 227
              PL++G   G+    S+  AL     ++ R V   E+G+
Sbjct: 177 --SPLVIGIGDGENFVASDAPAL----LEHTRRVIYLEDGD 211


>gnl|CDD|48476 cd00712, AsnB, Glutamine amidotransferases class-II (GATase)
           asparagine synthase_B type.  Asparagine synthetase B
           catalyses the ATP-dependent conversion of aspartate to
           asparagine. This enzyme is a homodimer, with each
           monomer composed of a  glutaminase domain and a
           synthetase domain. The N-terminal glutaminase domain
           hydrolyzes glutamine to glutamic acid and ammonia..
          Length = 220

 Score = 94.9 bits (236), Expect = 5e-20
 Identities = 63/205 (30%), Positives = 87/205 (42%), Gaps = 49/205 (23%)

Query: 15  CGVFGILG----HPDAATLTAIGLHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTK 70
           CG+ GI+G      D ATL  + L AL HRG + +GI       +  E            
Sbjct: 1   CGIAGIIGLDGASVDRATLERM-LDALAHRGPDGSGI-------WIDE------------ 40

Query: 71  PETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLI 130
                     +A+GH R S     +    QP+ ++   G + +  NG   N   LR +L 
Sbjct: 41  ---------GVALGHRRLSIID--LSGGAQPMVSE--DGRLVLVFNGEIYNYRELRAELE 87

Query: 131 SSGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLAL---TRTKLIATRD 187
           + G  F++ SDTEVILHL     +        D L  + G +A  AL    + +L   RD
Sbjct: 88  ALGHRFRTHSDTEVILHLYEEWGE--------DCLERLNGMFA-FALWDKRKRRLFLARD 138

Query: 188 PIGIRPLIMGELHGKPIFCSETCAL 212
             GI+PL  G   G   F SE  AL
Sbjct: 139 RFGIKPLYYGRDGGGLAFASELKAL 163


>gnl|CDD|30716 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
           acid transport and metabolism].
          Length = 542

 Score = 92.8 bits (230), Expect = 2e-19
 Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 51/234 (21%)

Query: 15  CGVFGILGHPDAATLTAIG---LHALQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKP 71
           CG+ GIL   +     +I       L+HRG + +G+                        
Sbjct: 2   CGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGV------------------------ 37

Query: 72  ETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS 131
                +  N  +GH R S     +    QP+  +   G  AI +NG   N   LRK+L  
Sbjct: 38  ----WISLNALLGHRRLSIVD--LSGGRQPMIKEG--GKYAIVYNGEIYNVEELRKELRE 89

Query: 132 SGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQG--AYAMLALTRTKLIATRDPI 189
           +G  F++ SDTEVIL L     +        D + H+ G  A+A+   TR KL   RDP 
Sbjct: 90  AGYEFRTYSDTEVILTLYEEWGE--------DCVEHLNGMFAFAIYDETRQKLFLARDPF 141

Query: 190 GIRPLIMGELHGKPIFCSETCAL----EITGAKYIRDVENGETIVCELQEDGFI 239
           G++PL     +    F SE  AL     +   + I+++  G   + E  + G I
Sbjct: 142 GVKPLYYTSKNENLAFASEIKALLAHPVVRFLRDIKELPPGH--LLEFTDGGLI 193


>gnl|CDD|73286 cd01907, GlxB, Glutamine amidotransferases class-II
           (Gn-AT)_GlxB-type.  GlxB is a glutamine
           amidotransferase-like protein of unknown function found
           in bacteria and archaea. GlxB has a structural fold
           similar to that of other class II glutamine
           amidotransferases including glucosamine-fructose
           6-phosphate synthase (GLMS or GFAT), glutamine
           phosphoribosylpyrophosphate (Prpp) amidotransferase
           (GPATase),  asparagine synthetase B (AsnB), beta lactam
           synthetase (beta-LS) and glutamate synthase (GltS). 
           The GlxB fold is also somewhat similar to the Ntn
           (N-terminal nucleophile) hydrolase fold of the
           proteasomal alpha and beta subunits..
          Length = 249

 Score = 79.9 bits (197), Expect = 2e-15
 Identities = 60/257 (23%), Positives = 93/257 (36%), Gaps = 48/257 (18%)

Query: 15  CGVFGIL---GHPDAATLTAIGLHALQHRG-QEATGIISFNGNK---FHSERHLGL---- 63
           CG+FGI+   G P    L    L A+Q RG  +  G   +       + S + + +    
Sbjct: 1   CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGV 60

Query: 64  -----VGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGN 118
                +   +     L    G   I H R  T          P      +G IA+ HNG 
Sbjct: 61  GYPEDIARRYD----LEEYKGYHWIAHTRQPTNSAVWWYGAHPFS----IGDIAVVHNGE 112

Query: 119 FTNGLTLRKKLISSGAIFQSTSDTEVILHLIA-RSQKNGSCD------------------ 159
            +N  + R+ L   G  F++ +DTEVI + +    +K G                     
Sbjct: 113 ISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLL 172

Query: 160 --RFIDSLRHVQGAYAMLALTRTKLIATRDPIGIRPLIMGELHGKPIFCSETCAL-EITG 216
             R    L  + G + ++  T    I  RD I +RP ++ E        SE CA+ EI  
Sbjct: 173 ALRLTYRLADLDGPFTIIVGTPDGFIVIRDRIKLRPAVVAETDDYVAIASEECAIREIPD 232

Query: 217 AKYIRDVE--NGETIVC 231
               +  E   GE ++ 
Sbjct: 233 RDNAKVWEPRPGEYVIW 249


>gnl|CDD|143924 pfam00156, Pribosyltran, Phosphoribosyl transferase domain.  This
           family includes a range of diverse phosphoribosyl
           transferase enzymes. This family includes: Adenine
           phosphoribosyltransferase EC:2.4.2.7.
           Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
           Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
           Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
           Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
           phosphoribosyltransferase EC:2.4.2.10. Uracil
           phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
           phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
           At the very N-terminus of this domain is the
           ATP-GTP-binding domain.
          Length = 123

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 272 RSIYVS---RRNMGKNLAK---ESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRN 325
            ++ +     R + + LA+   E  +  D++V I  GG+P A   A+E GIP      R 
Sbjct: 1   SNLLLDPEELRELIEALAEKIREEGIDPDVIVGIARGGIPLATALARELGIPLVLVRKRI 60

Query: 326 HYVGRTFIEPSHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
                        +       +      +L GKRV+++DD +  G T    V++++ AGA
Sbjct: 61  SLPSSIKSRGGESVTLLSRLPE------LLKGKRVLIVDDVLDTGGTLRAAVELLKKAGA 114

Query: 386 SEVHLRV 392
             V + V
Sbjct: 115 KVVGVAV 121


>gnl|CDD|36482 KOG1268, KOG1268, KOG1268, Glucosamine 6-phosphate synthetases,
           contain amidotransferase and phosphosugar isomerase
           domains [Cell wall/membrane/envelope biogenesis].
          Length = 670

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 26/211 (12%)

Query: 15  CGVFGILGHPDAATLTAI------GLHALQHRGQEATG--IISFNGNKFHSERHLGLVG- 65
           CG+FG        T   I      GL  L++RG ++ G  I           +  G V  
Sbjct: 2   CGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSS 61

Query: 66  -DHFTKPETLSL---LPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTN 121
                  + L+L      +  I H R++T G     N  P  +D       + HNG  TN
Sbjct: 62  LKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPS-NEFVVVHNGIITN 120

Query: 122 GLTLRKKLISSGAIFQSTSDTEVI----LHLIARSQKNGSCDRFIDS-LRHVQGAYAMLA 176
              L+  L   G +F+S +DTE I     H+   S ++      ++  L+ ++GA+ +L 
Sbjct: 121 FKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLLF 180

Query: 177 LTR---TKLIATRDPIGIRPLIMG-ELHGKP 203
            +     +++A R      PL++G +   K 
Sbjct: 181 KSSHFPGEVVAARKG---SPLLIGVKSKTKL 208


>gnl|CDD|35791 KOG0571, KOG0571, KOG0571, Asparagine synthase
           (glutamine-hydrolyzing) [Amino acid transport and
           metabolism].
          Length = 543

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 57/203 (28%), Positives = 81/203 (39%), Gaps = 43/203 (21%)

Query: 15  CGVFGILGHPDAATLTAIGLHA---LQHRGQEATGIISFNGNKFHSERHLGLVGDHFTKP 71
           CG+  +LGH D+       L     ++HRG + +G+   N N    ER L +V       
Sbjct: 2   CGILAVLGHEDSEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHER-LAIVD------ 54

Query: 72  ETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLIS 131
                             T+G Q I          + G   +  NG   N   LR+    
Sbjct: 55  -----------------PTSGAQPIVG--------EDGTYVVTVNGEIYNHKKLREHCKD 89

Query: 132 SGAIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIGI 191
               FQ+ SD EVI+HL  +       ++ I  L  V  A+ +L     K++A RDPIG+
Sbjct: 90  FE--FQTGSDCEVIIHLYEK----HGGEQAICMLDGVF-AFVLLDTKDDKVVAARDPIGV 142

Query: 192 RPLIMG-ELHGKPIFCSETCALE 213
            PL  G +  G   F SE   LE
Sbjct: 143 TPLYYGWDSDGSVYFASEMKCLE 165


>gnl|CDD|30849 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and
           related PRPP-binding proteins [Nucleotide transport and
           metabolism].
          Length = 179

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 293 ADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVKLKHSANR 352
            D +V I   G+P A   A E G+PF   + +   +    +    +   +G +       
Sbjct: 54  IDKIVTIEARGIPLAAAVALELGVPFVP-VRKKGKLPEESVV-ETYYLEYGSETLELHKD 111

Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
            +  G RV+++DD +  G T++ +++++  AGA
Sbjct: 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGA 144


>gnl|CDD|48481 cd01908, YafJ, Glutamine amidotransferases class-II
           (Gn-AT)_YafJ-type.  YafJ is a glutamine
           amidotransferase-like protein of unknown function found
           in prokaryotes, eukaryotes and archaea.  YafJ has a
           conserved structural fold similar to those of other
           class II glutamine amidotransferases including
           lucosamine-fructose 6-phosphate synthase (GLMS or GFAT),
           glutamine phosphoribosylpyrophosphate (Prpp)
           amidotransferase (GPATase),  asparagine synthetase B
           (AsnB), beta lactam synthetase (beta-LS) and glutamate
           synthase (GltS).  The YafJ fold is also somwhat similar
           to the Ntn (N-terminal nucleophile) hydrolase fold of
           the proteasomal alpha and beta subunits..
          Length = 257

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 83  IGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIF-QSTSD 141
           + HVR +T G   + N  P F     G    AHNG       LR++L+         T+D
Sbjct: 84  LAHVRAATVGPVSLENCHP-FTR---GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTD 139

Query: 142 TEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIAT 185
           +E+   L+             + L  +      LA         
Sbjct: 140 SELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLN 183


>gnl|CDD|30416 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport
           and metabolism].
          Length = 371

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 25/137 (18%)

Query: 79  GNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTNGLTLRKKLISSGAIFQS 138
             +A+ H R+ST          P F  L        HNG        R  L + G  F+S
Sbjct: 202 SAIALVHTRFSTNTFPSWPLAHP-FRLL-------VHNGEINTYGGNRNWLEARGYKFES 253

Query: 139 TSDTEVILHLIARSQKNGSCDRFIDSL--------RHVQGAYAML---------ALTRTK 181
            +D EV+  L+    + GS    +D+         R +  A  +L          +    
Sbjct: 254 PTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEG 313

Query: 182 LIATRDPIGIRPLIMGE 198
                D   +     G 
Sbjct: 314 RAFYEDHSALMEPWDGP 330


>gnl|CDD|31197 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
           [Nucleotide transport and metabolism].
          Length = 203

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 267 SIISGRSIYVSRRNMGKN---LAKESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGII 323
           S+ +   I +  R++GK+   L   S  +AD+++      V   +G A  SG+P     +
Sbjct: 47  SVPAPVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAI-SGVPL--ATM 103

Query: 324 RNHYVGRTFI--EPSHHIRAFGVKLKH--SANRTILAGKRVVLIDDSIVRGTTSVKIVQM 379
             + +G+      P  H +  G       S+N   + GKR V++DD I  G+T  + ++ 
Sbjct: 104 VAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQ 163

Query: 380 IRSAGASEV 388
           ++  G   V
Sbjct: 164 LKEEGGKPV 172


>gnl|CDD|32109 COG1926, COG1926, Predicted phosphoribosyltransferases [General
           function prediction only].
          Length = 220

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 38/156 (24%)

Query: 275 YVSRRNMGKNLAKESPVIAD----IVVPIPDGGVPAAIGYAKESGIPFEQGIIR------ 324
           +  R + G+ LA+E   + D    IV+ +P GGVP A   A+  G P +  I+R      
Sbjct: 4   FRDRTDAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPG 63

Query: 325 -----------------NHYVGRTFIEPSHHIRAFGVKLKHSANRTI-----------LA 356
                            N+ V R+      +I A   + +    R             L 
Sbjct: 64  NPELAIGAVAEGGDVVLNYDVVRSLGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLK 123

Query: 357 GKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRV 392
           G+ V+L+DD I  G T    V+ +R+ G  E+ + V
Sbjct: 124 GRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV 159


>gnl|CDD|30810 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
           transport and metabolism / Amino acid transport and
           metabolism].
          Length = 314

 Score = 38.2 bits (89), Expect = 0.005
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 15/104 (14%)

Query: 287 KESPVIADIVVPIPD-GGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIRAFGVK 345
           +E   + D VV  PD GGV  A   A   G P               I+         V+
Sbjct: 157 REKYDLDDPVVVSPDKGGVKRARALADRLGAPL------------AIIDKRRDSSPNVVE 204

Query: 346 LKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVH 389
           + +      + GK VV++DD I  G T  K  + ++  GA +V+
Sbjct: 205 VMNLIGD--VEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVY 246


>gnl|CDD|30470 COG0121, COG0121, Predicted glutamine amidotransferase [General
           function prediction only].
          Length = 252

 Score = 36.9 bits (85), Expect = 0.011
 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 4/117 (3%)

Query: 77  LPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTN---GLTLRKKLISSG 133
           +   + I HVR +T G+  + N  P   +L       AHNG           + + +   
Sbjct: 68  IKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLEPVGYT 127

Query: 134 AIFQSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYAMLALTRTKLIATRDPIG 190
               +         +     K G    F   +R   G +  L      L A      
Sbjct: 128 DSEAAFCGITDSERIFLLILKPGLDALFQAEIR-ALGLFNTLLSDGNYLFALCSTAL 183


>gnl|CDD|30809 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
           transport and metabolism].
          Length = 201

 Score = 36.4 bits (84), Expect = 0.016
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 24/97 (24%)

Query: 294 DIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHH-----IRAFGVKLKH 348
           D+V     GG+P A   A           +R         E   H     I    VK   
Sbjct: 63  DVVAGPALGGIPLAAATALALAHLPPMAYVR--------KEAKDHGTGGLIEGGEVK--- 111

Query: 349 SANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
                   G++VV+++D I  G + ++ V+ +R AGA
Sbjct: 112 --------GEKVVVVEDVITTGGSILEAVEALREAGA 140


>gnl|CDD|30979 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
           [Nucleotide transport and metabolism].
          Length = 178

 Score = 36.2 bits (84), Expect = 0.022
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 355 LAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPMVLYPDFYGIDIP 408
           + G+ V++++D I  G T  K+  +++  GA  V +           + +  D+ G ++P
Sbjct: 91  IKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERRKVDIEADYVGFEVP 150

Query: 409 D 409
           D
Sbjct: 151 D 151


>gnl|CDD|31242 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
           function prediction only].
          Length = 225

 Score = 35.0 bits (80), Expect = 0.052
 Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 18/172 (10%)

Query: 232 ELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAKESPV 291
            L        +    P        +  Y    R   +IS    +    ++ K LA+    
Sbjct: 47  PLSSHACRCGECLAKPPPFERLRSLGSYNGPLR--ELISQLK-FQGDLDLAKLLARLLAK 103

Query: 292 IADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEPSHHIR----AFGVKLK 347
             D  +  PD  VP  +  ++     F Q  +    + R   +P    R    +    LK
Sbjct: 104 ALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLK 163

Query: 348 HSANRTILAG-----------KRVVLIDDSIVRGTTSVKIVQMIRSAGASEV 388
               R  L G           K V+L+DD    G T  +  +++R AGA  V
Sbjct: 164 ALERRRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRV 215


>gnl|CDD|38577 KOG3367, KOG3367, KOG3367, Hypoxanthine-guanine
           phosphoribosyltransferase [Nucleotide transport and
           metabolism].
          Length = 216

 Score = 31.7 bits (71), Expect = 0.49
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 343 GVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHL------RVASPM 396
            +++    + + L GK V++++D +  G T   ++  +++   S V +      R    +
Sbjct: 111 DIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRTRRSV 170

Query: 397 VLYPDFYGIDIPD 409
              PD+ G +IPD
Sbjct: 171 GYKPDYVGFEIPD 183


>gnl|CDD|34826 COG5229, LOC7, Chromosome condensation complex Condensin, subunit H
           [Chromatin structure and dynamics / Cell division and
           chromosome partitioning].
          Length = 662

 Score = 31.0 bits (69), Expect = 0.71
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 6/107 (5%)

Query: 181 KLIATRDPIGIRPLIMGELHGKPIFCSETCALEITGAKYIRDVENGETIVCELQEDGFIS 240
           K     D  G + L++  L        +        +  I+D EN      + +E+  I 
Sbjct: 141 KRCVDFDEGGAKSLLLNTL------NIDNTKRLYFDSSPIKDTENVGQGKLQRKEEELIE 194

Query: 241 IDSYKNPSTSPERMCIFEYVYFARPDSIISGRSIYVSRRNMGKNLAK 287
            DS  +      +            DS+IS  S+      +G +  K
Sbjct: 195 RDSLVDDLMIDSQSLGISSNDSTVNDSVISAPSMEDEILGLGMDFIK 241


>gnl|CDD|147583 pfam05477, SURF2, Surfeit locus protein 2 (SURF2).  Surfeit locus
           protein 2 is part of a group of at least six sequence
           unrelated genes (Surf-1 to Surf-6). The six Surfeit
           genes have been classified as housekeeping genes, being
           expressed in all tissue types tested and not containing
           a TATA box in their promoter region. The exact function
           of SURF2 is unknown.
          Length = 244

 Score = 30.7 bits (69), Expect = 0.90
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 196 MGEL--HGKPIFCSETCALEITGAKYIRDVENGETIVCELQE-DGFISIDSYKNPSTSPE 252
           M EL    K         LE+     +R V  G  + C L E   +     Y+  S S  
Sbjct: 1   MDELPEDVKSFLRQHPF-LELVENGKVRCVLTGHELPCRLPELQSYTRGKKYQRLSRSSP 59

Query: 253 RMCIFEY 259
               F +
Sbjct: 60  PFNYFSF 66


>gnl|CDD|133135 cd06604, GH31_glucosidase_II_MalA, Alpha-glucosidase II
           (alpha-D-glucoside glucohydrolase) is a glycosyl
           hydrolase family 31 (GH31) enzyme, found in bacteria and
           plants, which has exo-alpha-1,4-glucosidase and
           oligo-1,6-glucosidase activities. Alpha-glucosidase II
           has been characterized in Bacillus
           thermoamyloliquefaciens where it forms a homohexamer.
           This family also includes the MalA alpha-glucosidase
           from Sulfolobus sulfataricus and the AglA
           alpha-glucosidase from Picrophilus torridus. MalA is
           part of the carbohydrate-metabolizing machinery that
           allows this organism to utilize carbohydrates, such as
           maltose, as the sole carbon and energy source.
          Length = 339

 Score = 30.2 bits (69), Expect = 1.4
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 296 VVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYV----GRTFIEP 335
           VV I D GV    GY       +E+G+  +++V    G  +I  
Sbjct: 80  VVTIIDPGVKVDPGYD-----VYEEGLENDYFVKDPDGELYIGR 118


>gnl|CDD|37515 KOG2304, KOG2304, KOG2304, 3-hydroxyacyl-CoA dehydrogenase [Lipid
           transport and metabolism].
          Length = 298

 Score = 29.9 bits (67), Expect = 1.6
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 15/68 (22%)

Query: 406 DIPDPTALLANKCSSPQEMCNFIGVDSLGFLSVDGLYNAICGIPRDPQNPAFADHCFTGD 465
           DI     L A     P E+ +++G+D+  F+ +DG +         P++  FA       
Sbjct: 227 DIDTAMKLGAGYPMGPFELADYVGLDTCKFV-MDGWHE------GYPEDSLFA------- 272

Query: 466 YPTPLVDK 473
            P+PL+DK
Sbjct: 273 -PSPLLDK 279


>gnl|CDD|146351 pfam03666, NPR3, Nitrogen Permease regulator of amino acid
           transport activity 3.  This family, also known in yeasts
           as Rmd11, complexes with NPR2, pfam06218. This complex
           heterodimer is responsible for inactivating TORC1. an
           evolutionarily conserved protein complex that controls
           cell size via nutritional input signals, specifically,
           in response to amino acid starvation.
          Length = 424

 Score = 29.7 bits (67), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 410 PTALLANKCSSPQEMCN--F-IGVDSLGFLS 437
            T  LA   S P+EMCN  F + +D L F+ 
Sbjct: 3   DTDFLAEILSPPREMCNTRFELKIDDLRFVG 33


>gnl|CDD|32417 COG2236, COG2236, Predicted phosphoribosyltransferases [General
           function prediction only].
          Length = 192

 Score = 29.6 bits (66), Expect = 2.1
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 279 RNMGKNLA---KESPVIADIVVPIPDGGVPAAIGYAKESGIPFEQGIIRNHYVGRTFIEP 335
             + + LA   + S    D++V I  GG+  A   +   G+     I   HY      + 
Sbjct: 13  HRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDG 72

Query: 336 SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGASEVHLRVASP 395
                    K+K+      L+GK+V+++DD +  G T    ++ ++    +EV   V   
Sbjct: 73  -------EAKVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQY 125

Query: 396 MVLYPDFYGIDIPD 409
                 +       
Sbjct: 126 KKSPDYYGEEVTAW 139


>gnl|CDD|143922 pfam00154, RecA, recA bacterial DNA recombination protein.  RecA is
           a DNA-dependent ATPase and functions in DNA repair
           systems. RecA protein catalyses an ATP-dependent DNA
           strand-exchange reaction that is the central step in the
           repair of dsDNA breaks by homologous recombination.
          Length = 322

 Score = 28.8 bits (65), Expect = 3.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 137 QSTSDTEVILHLIARSQKNGSCDRFID 163
           +S+  T + LH IA +QK G    FID
Sbjct: 61  ESSGKTTLALHAIAEAQKAGGTAAFID 87


>gnl|CDD|112704 pfam03904, DUF334, Domain of unknown function (DUF334).
           Staphylococcus aureus plasmid proteins with no
           characterized function.
          Length = 229

 Score = 28.4 bits (63), Expect = 4.5
 Identities = 13/20 (65%), Positives = 14/20 (70%)

Query: 428 IGVDSLGFLSVDGLYNAICG 447
           IG D +GFL VD L NAI G
Sbjct: 169 IGRDFMGFLHVDTLQNAIAG 188


>gnl|CDD|34873 COG5276, COG5276, Uncharacterized conserved protein [Function
           unknown].
          Length = 370

 Score = 28.4 bits (63), Expect = 4.8
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 212 LEITGAKYIRDVENGETIVCELQEDGFISIDSYKNPSTSPERMCIFEYVYFARPDSIISG 271
           L   G  Y   V      V +L +DGF+ +D   +PS SP+    +        D  ISG
Sbjct: 125 LNTDGYAYGVYVSGNYAYVADL-DDGFLIVD-VSDPS-SPQLAGRYALPGGDTHDVAISG 181

Query: 272 RSIYVSRRNMG 282
              YV+ R+ G
Sbjct: 182 NYAYVAWRDGG 192


>gnl|CDD|36924 KOG1712, KOG1712, KOG1712, Adenine phosphoribosyl transferases
           [Nucleotide transport and metabolism].
          Length = 183

 Score = 27.9 bits (62), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 353 TILAGKRVVLIDDSIVRGTTSVKIVQMIRSAGA 385
            I  G+RVV++DD +  G T     +++   GA
Sbjct: 118 AIKPGQRVVVVDDLLATGGTLAAATELLERVGA 150


>gnl|CDD|29984 cd00983, recA, RecA is a  bacterial enzyme which has roles in
           homologous recombination, DNA repair, and the induction
           of the SOS response.  RecA couples ATP hydrolysis to DNA
           strand exchange..
          Length = 325

 Score = 27.5 bits (61), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 137 QSTSDTEVILHLIARSQKNGSCDRFID 163
           +S+  T + LH IA +QK G    FID
Sbjct: 64  ESSGKTTLALHAIAEAQKLGGTVAFID 90


>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
           glyceraldehyde 3-phosphate dehydrogenase and ALDH family
           11.  NADP+-dependent non-phosphorylating glyceraldehyde
           3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
           catalyzes the irreversible oxidation of glyceraldehyde
           3-phosphate to 3-phosphoglycerate generating NADPH for
           biosynthetic reactions.  This CD also includes the
           Arabidopsis thaliana osmotic-stress-inducible ALDH
           family 11, ALDH11A3  and similar sequences. In
           autotrophic eukaryotes, NP-GAPDH generates NADPH for
           biosynthetic processes from photosynthetic
           glyceraldehyde-3-phosphate exported from the chloroplast
           and catalyzes one of the classic glycolytic bypass
           reactions unique to plants.
          Length = 473

 Score = 27.5 bits (62), Expect = 7.9
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 17/69 (24%)

Query: 133 GAIFQSTSDTEVILHLI-----ARSQKNGSCDRFIDSL----RH-----VQG-AYAMLAL 177
            +IF  T D      L           N  C R  D      R       QG   A+ ++
Sbjct: 407 ASIF--TKDINKARKLADALEVGTVNINSKCQRGPDHFPFLGRKDSGIGTQGIGDALRSM 464

Query: 178 TRTKLIATR 186
           TR K I   
Sbjct: 465 TRRKGIVIN 473


>gnl|CDD|113048 pfam04261, Dyp_perox, Dyp-type peroxidase family.  This family of
           dye-decolourising peroxidases lack a typical
           heme-binding region.
          Length = 311

 Score = 27.3 bits (61), Expect = 8.7
 Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 7/41 (17%)

Query: 308 IGYAKESGIPFEQGII-RNHYVGRTFIEPSHHIRAFGVKLK 347
           IG  K  G   +  +   + +V         + +  G  LK
Sbjct: 209 IGRRKSDGAELDGDVKPADSHVRLA------NPKEDGKGLK 243


>gnl|CDD|29994 cd01128, rho_factor, Transcription termination factor rho is a
           bacterial ATP-dependent RNA/DNA helicase. It is a
           homohexamer. Each monomer consists of an N-terminal
           domain of the OB fold, which is responsible for binding
           to cysteine rich nucleotides. This alignment is of the
           C-terminal ATP binding domain..
          Length = 249

 Score = 27.5 bits (61), Expect = 9.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 320 QGIIRNHYVGRTFIEP-SHHIRAFGVKLKHSANRTILAGKRVVLIDDSIVR 369
           Q  ++   +  TF EP   H++   + L+  A R +  GK VV++ DSI R
Sbjct: 65  QRSVKGEVIASTFDEPPERHVQVAEMVLE-KAKRLVEHGKDVVILLDSITR 114


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,029,496
Number of extensions: 332315
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 50
Length of query: 488
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 390
Effective length of database: 4,146,055
Effective search space: 1616961450
Effective search space used: 1616961450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)