RPSBLAST alignment of GI: 254780336 and protein with PDBid: 3mdn

>3mdn_A Glutamine amidotransferases class-II domain prote; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Length = 274
 Score =  113 bits (283), Expect = 1e-25
 Identities = 36/262 (13%), Positives = 64/262 (24%), Gaps = 43/262 (16%)

Query: 15  CGVFGILGHPDA-ATLTAIGLHAL---QHRGQEATGIISFNG---------NKFHSERHL 61
           C      G P     + +   H+L       +E     + +G          +    R +
Sbjct: 4   CRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDV 63

Query: 62  GLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTN 121
                          +   + + HVR ST       N  P             HNG    
Sbjct: 64  YPAWSDPNLRAVAHHVRSGLFLSHVRASTGSCISRNNCHPFA----ARRWCFMHNGQVGG 119

Query: 122 GLTLRKKLISS-----GAIFQSTSDTEVILHLIARSQKNGS----CDRFIDSLRHVQGA- 171
               RK+   +         + ++D+EV+  L               R I  L  +  A 
Sbjct: 120 FEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEHDPHGALARAIARLEGLSRAH 179

Query: 172 -------YAMLALTRTKLIATRDPIGIRPLIMGELHGKP----IFCSETCALEITGAKYI 220
                   +        L A R         +   +          SE    +       
Sbjct: 180 GTTPHMRLSAAFSDGQTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEPLETDEGDW--- 236

Query: 221 RDVENGETIVCELQEDGFISID 242
            ++  G  +   +  +G    D
Sbjct: 237 TELRPGRMLT--IGAEGAAERD 256