RPSBLAST alignment of GI: 254780336 and protein with PDBid: 3mdn
>3mdn_A Glutamine amidotransferases class-II domain prote; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Length = 274
Score = 113 bits (283), Expect = 1e-25
Identities = 36/262 (13%), Positives = 64/262 (24%), Gaps = 43/262 (16%)
Query: 15 CGVFGILGHPDA-ATLTAIGLHAL---QHRGQEATGIISFNG---------NKFHSERHL 61
C G P + + H+L +E + +G + R +
Sbjct: 4 CRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDV 63
Query: 62 GLVGDHFTKPETLSLLPGNMAIGHVRYSTTGDQIIRNVQPLFADLQVGGIAIAHNGNFTN 121
+ + + HVR ST N P HNG
Sbjct: 64 YPAWSDPNLRAVAHHVRSGLFLSHVRASTGSCISRNNCHPFA----ARRWCFMHNGQVGG 119
Query: 122 GLTLRKKLISS-----GAIFQSTSDTEVILHLIARSQKNGS----CDRFIDSLRHVQGA- 171
RK+ + + ++D+EV+ L R I L + A
Sbjct: 120 FEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEHDPHGALARAIARLEGLSRAH 179
Query: 172 -------YAMLALTRTKLIATRDPIGIRPLIMGELHGKP----IFCSETCALEITGAKYI 220
+ L A R + + SE +
Sbjct: 180 GTTPHMRLSAAFSDGQTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEPLETDEGDW--- 236
Query: 221 RDVENGETIVCELQEDGFISID 242
++ G + + +G D
Sbjct: 237 TELRPGRMLT--IGAEGAAERD 256