HHsearch alignment for GI: 254780337 and conserved domain: COG1088
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=99.20 E-value=1.9e-09 Score=83.30 Aligned_cols=212 Identities=17% Similarity=0.154 Sum_probs=142.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECC--HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 9999938998688999999998899--89999789--8999999999986499289998789999999999999999818
Q gi|254780337|r 19 RLALVTGSSRGIGYYTALELARSGA--YVIACGRS--ISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWG 94 (257)
Q Consensus 19 K~alVTGas~GIG~a~a~~la~~G~--~Vi~~~r~--~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 94 (257)
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~--~~~~~fv~~DI~D~~~v~~~~~~~----- 73 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVED--SPRYRFVQGDICDRELVDRLFKEY----- 73 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHC--CCCCEEEECCCCCHHHHHHHHHHC-----
T ss_conf 9379965751577899999996099752899752331577878886406--997158854554799999999744-----
Q ss_pred CCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH--HHC-----------CC
Q ss_conf 98799876875888888676599999999999989999999999999986089869997883--564-----------78
Q gi|254780337|r 95 KLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSG--AAY-----------KC 161 (257)
Q Consensus 95 ~iDilVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~--~g~-----------~~ 161 (257)
T Consensus 74 ~~D~VvhfAAESH-V----DRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~---frf~HISTDEVYG~l~~~~~~FtE~tp 145 (340)
T COG1088 74 QPDAVVHFAAESH-V----DRSIDGPAPFIQTNVVGTYTLLEAARKYWGK---FRFHHISTDEVYGDLGLDDDAFTETTP 145 (340)
T ss_pred CCCEEEEECHHCC-C----CCCCCCHHHHHHCCHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 8875998110013-3----2233570553400028799999999984666---207994152102566678887544799
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC----CCCCCH--HH----HHHCCCC---------CCCCCCCHH
Q ss_conf 8983688989999999999999985443869975532----883797--79----8441444---------324588889
Q gi|254780337|r 162 RPLWGAYSASKAAIEALARTWSKETVNTALRVINIDP----GPTRTS--MR----AKAMPAE---------DPNTVPHPQ 222 (257)
Q Consensus 162 ~~~~~~Y~asKaal~~lt~~la~E~~~~gIrvn~I~P----G~v~T~--m~----~~~~~~~---------~~~~~~~pe 222 (257)
T Consensus 146 ~~PsSPYSASKAasD~lVray~~TY---glp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~Ve 222 (340)
T COG1088 146 YNPSSPYSASKAASDLLVRAYVRTY---GLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVE 222 (340)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEH
T ss_conf 9999974044556789999999871---9966984477776887671556679999997399985436985402058717
Q ss_pred HHHHHHHHHHCHHHCCCCCEEEECCCCE
Q ss_conf 9999999961975626685798768763
Q gi|254780337|r 223 KVAKIISFLCATQKIETGKLFSVPQNRF 250 (257)
Q Consensus 223 diA~~v~fL~s~~~~~tG~~~~vdgG~~ 250 (257)
T Consensus 223 Dh~~ai~~Vl~kg~--~GE~YNIgg~~E 248 (340)
T COG1088 223 DHCRAIDLVLTKGK--IGETYNIGGGNE 248 (340)
T ss_pred HHHHHHHHHHHCCC--CCCEEEECCCCC
T ss_conf 57889999995686--776687178752