HHsearch alignment for GI: 254780337 and conserved domain: COG1088

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=99.20  E-value=1.9e-09  Score=83.30  Aligned_cols=212  Identities=17%  Similarity=0.154  Sum_probs=142.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECC--HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf             9999938998688999999998899--89999789--8999999999986499289998789999999999999999818
Q gi|254780337|r   19 RLALVTGSSRGIGYYTALELARSGA--YVIACGRS--ISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWG   94 (257)
Q Consensus        19 K~alVTGas~GIG~a~a~~la~~G~--~Vi~~~r~--~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   94 (257)
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~--~~~~~fv~~DI~D~~~v~~~~~~~-----   73 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVED--SPRYRFVQGDICDRELVDRLFKEY-----   73 (340)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHC--CCCCEEEECCCCCHHHHHHHHHHC-----
T ss_conf             9379965751577899999996099752899752331577878886406--997158854554799999999744-----


Q ss_pred             CCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH--HHC-----------CC
Q ss_conf             98799876875888888676599999999999989999999999999986089869997883--564-----------78
Q gi|254780337|r   95 KLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSG--AAY-----------KC  161 (257)
Q Consensus        95 ~iDilVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~--~g~-----------~~  161 (257)
T Consensus        74 ~~D~VvhfAAESH-V----DRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~---frf~HISTDEVYG~l~~~~~~FtE~tp  145 (340)
T COG1088          74 QPDAVVHFAAESH-V----DRSIDGPAPFIQTNVVGTYTLLEAARKYWGK---FRFHHISTDEVYGDLGLDDDAFTETTP  145 (340)
T ss_pred             CCCEEEEECHHCC-C----CCCCCCHHHHHHCCHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             8875998110013-3----2233570553400028799999999984666---207994152102566678887544799


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC----CCCCCH--HH----HHHCCCC---------CCCCCCCHH
Q ss_conf             8983688989999999999999985443869975532----883797--79----8441444---------324588889
Q gi|254780337|r  162 RPLWGAYSASKAAIEALARTWSKETVNTALRVINIDP----GPTRTS--MR----AKAMPAE---------DPNTVPHPQ  222 (257)
Q Consensus       162 ~~~~~~Y~asKaal~~lt~~la~E~~~~gIrvn~I~P----G~v~T~--m~----~~~~~~~---------~~~~~~~pe  222 (257)
T Consensus       146 ~~PsSPYSASKAasD~lVray~~TY---glp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~Ve  222 (340)
T COG1088         146 YNPSSPYSASKAASDLLVRAYVRTY---GLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVE  222 (340)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEH
T ss_conf             9999974044556789999999871---9966984477776887671556679999997399985436985402058717


Q ss_pred             HHHHHHHHHHCHHHCCCCCEEEECCCCE
Q ss_conf             9999999961975626685798768763
Q gi|254780337|r  223 KVAKIISFLCATQKIETGKLFSVPQNRF  250 (257)
Q Consensus       223 diA~~v~fL~s~~~~~tG~~~~vdgG~~  250 (257)
T Consensus       223 Dh~~ai~~Vl~kg~--~GE~YNIgg~~E  248 (340)
T COG1088         223 DHCRAIDLVLTKGK--IGETYNIGGGNE  248 (340)
T ss_pred             HHHHHHHHHHHCCC--CCCEEEECCCCC
T ss_conf             57889999995686--776687178752