HHsearch alignment for GI: 254780337 and conserved domain: COG1091
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].
Probab=99.08 E-value=4.7e-08 Score=73.99 Aligned_cols=192 Identities=18% Similarity=0.165 Sum_probs=129.4
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99938998688999999998899899997898999999999986499289998789999999999999999818987998
Q gi|254780337|r 21 ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILI 100 (257)
Q Consensus 21 alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDilV 100 (257)
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------------~Ditd~~~v~~~i~~~-----~PDvVI 55 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAE---------------------LDITDPDAVLEVIRET-----RPDVVI 55 (281)
T ss_pred EEEECCCCHHHHHHHHHHC-CCCEEEECCCCC---------------------CCCCCHHHHHHHHHHH-----CCCEEE
T ss_conf 8997698767999999717-784399515765---------------------5556858999999861-----999899
Q ss_pred ECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-----------CCHHHH
Q ss_conf 768758888886765999999999999899999999999999860898699978835647889-----------836889
Q gi|254780337|r 101 ANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRP-----------LWGAYS 169 (257)
Q Consensus 101 NNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~~~~-----------~~~~Y~ 169 (257)
T Consensus 56 n~AAyt-~vD-~aE---~~~e~A~~vNa~~~~~lA~aa~~~-----ga~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG 125 (281)
T COG1091 56 NAAAYT-AVD-KAE---SEPELAFAVNATGAENLARAAAEV-----GARLVHISTDYVFDGEKGGPYKETDTPNPLNVYG 125 (281)
T ss_pred ECCCCC-CCC-CCC---CCHHHHHHHHHHHHHHHHHHHHHH-----CCEEEEEECCEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf 873203-654-133---898997776779999999999971-----9769996344574389898887789999702454
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC----HHHHHHCCCCCC----CCCC---CHHHHHHHHHHHHCHHHCC
Q ss_conf 8999999999999998544386997553288379----779844144432----4588---8899999999961975626
Q gi|254780337|r 170 ASKAAIEALARTWSKETVNTALRVINIDPGPTRT----SMRAKAMPAEDP----NTVP---HPQKVAKIISFLCATQKIE 238 (257)
Q Consensus 170 asKaal~~lt~~la~E~~~~gIrvn~I~PG~v~T----~m~~~~~~~~~~----~~~~---~pediA~~v~fL~s~~~~~ 238 (257)
T Consensus 126 ~sKl~GE~~v~~~~---~~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~--~ 200 (281)
T COG1091 126 RSKLAGEEAVRAAG---PRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKE--K 200 (281)
T ss_pred HHHHHHHHHHHHHC---CCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHCC--C
T ss_conf 77897899999739---987999856554588877899999985059926997984538746999999999998345--5
Q ss_pred CCCEEEECCCCEECCC
Q ss_conf 6857987687631543
Q gi|254780337|r 239 TGKLFSVPQNRFVNYL 254 (257)
Q Consensus 239 tG~~~~vdgG~~~n~~ 254 (257)
T Consensus 201 ~~~~yH~~~~g~~Swy 216 (281)
T COG1091 201 EGGVYHLVNSGECSWY 216 (281)
T ss_pred CCCEEEEECCCCCCHH
T ss_conf 5867998079741199