HHsearch alignment for GI: 254780337 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=100.00 E-value=0 Score=418.21 Aligned_cols=236 Identities=22% Similarity=0.274 Sum_probs=211.7
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 48899999389986889999999988998999978989999999999864-99289998789999999999999999818
Q gi|254780337|r 16 LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKI-NKKIDIFAFDLRDSNALELTKTYIAKRWG 94 (257)
Q Consensus 16 l~~K~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~-g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 94 (257)
T Consensus 2 L~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~g 81 (255)
T PRK09186 2 LEGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERYG 81 (255)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 89598999795868999999999987999999969889999999999870598079998468999999999999999819
Q ss_pred CCCEEEECCCCCCC--CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC--------CC-
Q ss_conf 98799876875888--88867659999999999998999999999999998608986999788356478--------89-
Q gi|254780337|r 95 KLDILIANAGILGS--ISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKC--------RP- 163 (257)
Q Consensus 95 ~iDilVNNAGi~~~--~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~~--------~~- 163 (257)
T Consensus 82 ~id~lVnnA~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi~g~~~~~~~~~~g~~~ 161 (255)
T PRK09186 82 KIDGAVNCAYPRNKQYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSIYGVVAPKFEIYEGTSM 161 (255)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCCCCC
T ss_conf 97789975766787677770109999999999998399999999999988742897389956678734764211268765
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHH----HCCCCCCCCCCCHHHHHHHHHHHHCHH-HC
Q ss_conf -836889899999999999999854438699755328837977984----414443245888899999999961975-62
Q gi|254780337|r 164 -LWGAYSASKAAIEALARTWSKETVNTALRVINIDPGPTRTSMRAK----AMPAEDPNTVPHPQKVAKIISFLCATQ-KI 237 (257)
Q Consensus 164 -~~~~Y~asKaal~~lt~~la~E~~~~gIrvn~I~PG~v~T~m~~~----~~~~~~~~~~~~pediA~~v~fL~s~~-~~ 237 (257)
T Consensus 162 ~~~~~Y~asKaal~~ltr~lA~e~a~~gIrVN~VaPG~i~~~~~~~~~~~~~~~~~~~~~~~p~dia~~v~fL~Sd~s~~ 241 (255)
T PRK09186 162 TSPVEYAAIKSGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEAFLNAYKKSCNGKGMLDPEDICGSLVFLLSDQSKY 241 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCC
T ss_conf 44676799889999999999999675898999985576889998999999986355779989999999999995705368
Q ss_pred CCCCEEEECCCCEE
Q ss_conf 66857987687631
Q gi|254780337|r 238 ETGKLFSVPQNRFV 251 (257)
Q Consensus 238 ~tG~~~~vdgG~~~ 251 (257)
T Consensus 242 iTGq~i~VDGG~sl 255 (255)
T PRK09186 242 ITGQNIIVDDGFSL 255 (255)
T ss_pred CCCCEEEECCCCCC
T ss_conf 01852883858066