HHsearch alignment for GI: 254780337 and conserved domain: PRK09186

>PRK09186 flagellin modification protein A; Provisional.
Probab=100.00  E-value=0  Score=418.21  Aligned_cols=236  Identities=22%  Similarity=0.274  Sum_probs=211.7

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf             48899999389986889999999988998999978989999999999864-99289998789999999999999999818
Q gi|254780337|r   16 LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKI-NKKIDIFAFDLRDSNALELTKTYIAKRWG   94 (257)
Q Consensus        16 l~~K~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~-g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   94 (257)
T Consensus         2 L~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~g   81 (255)
T PRK09186          2 LEGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERYG   81 (255)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             89598999795868999999999987999999969889999999999870598079998468999999999999999819


Q ss_pred             CCCEEEECCCCCCC--CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC--------CC-
Q ss_conf             98799876875888--88867659999999999998999999999999998608986999788356478--------89-
Q gi|254780337|r   95 KLDILIANAGILGS--ISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKC--------RP-  163 (257)
Q Consensus        95 ~iDilVNNAGi~~~--~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~~--------~~-  163 (257)
T Consensus        82 ~id~lVnnA~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi~g~~~~~~~~~~g~~~  161 (255)
T PRK09186         82 KIDGAVNCAYPRNKQYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSIYGVVAPKFEIYEGTSM  161 (255)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCCCCC
T ss_conf             97789975766787677770109999999999998399999999999988742897389956678734764211268765


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHH----HCCCCCCCCCCCHHHHHHHHHHHHCHH-HC
Q ss_conf             -836889899999999999999854438699755328837977984----414443245888899999999961975-62
Q gi|254780337|r  164 -LWGAYSASKAAIEALARTWSKETVNTALRVINIDPGPTRTSMRAK----AMPAEDPNTVPHPQKVAKIISFLCATQ-KI  237 (257)
Q Consensus       164 -~~~~Y~asKaal~~lt~~la~E~~~~gIrvn~I~PG~v~T~m~~~----~~~~~~~~~~~~pediA~~v~fL~s~~-~~  237 (257)
T Consensus       162 ~~~~~Y~asKaal~~ltr~lA~e~a~~gIrVN~VaPG~i~~~~~~~~~~~~~~~~~~~~~~~p~dia~~v~fL~Sd~s~~  241 (255)
T PRK09186        162 TSPVEYAAIKSGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEAFLNAYKKSCNGKGMLDPEDICGSLVFLLSDQSKY  241 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCC
T ss_conf             44676799889999999999999675898999985576889998999999986355779989999999999995705368


Q ss_pred             CCCCEEEECCCCEE
Q ss_conf             66857987687631
Q gi|254780337|r  238 ETGKLFSVPQNRFV  251 (257)
Q Consensus       238 ~tG~~~~vdgG~~~  251 (257)
T Consensus       242 iTGq~i~VDGG~sl  255 (255)
T PRK09186        242 ITGQNIIVDDGFSL  255 (255)
T ss_pred             CCCCEEEECCCCCC
T ss_conf             01852883858066