HHsearch alignment for GI: 254780337 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=98.76 E-value=9e-08 Score=72.11 Aligned_cols=209 Identities=21% Similarity=0.227 Sum_probs=141.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99993899868899999999889989999789899999999998649928999878999999999999999981898799
Q gi|254780337|r 20 LALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDIL 99 (257)
Q Consensus 20 ~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDil 99 (257)
T Consensus 1 rilitGa~GQlG~~L~~~l~~~g~~~~~~~~~-~~~~~~----------~~~~~~Dl~dP~~l~~~~r~~-----~Pd~v 64 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSKPGRVVVALTRS-TRLKLA----------ARWSQLDLTDPEALEELLRAI-----RPDAV 64 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCCCCCEEEEECCC-CCCCHH----------HHHHHHCCCCHHHHHHHHHHH-----CCCEE
T ss_conf 97887387567999999707888278643687-776113----------365440622468899999852-----87537
Q ss_pred EECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC-----H----HHCCCCC------C
Q ss_conf 87687588888867659999999999998999999999999998608986999788-----3----5647889------8
Q gi|254780337|r 100 IANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSS-----G----AAYKCRP------L 164 (257)
Q Consensus 100 VNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS-----~----~g~~~~~------~ 164 (257)
T Consensus 65 vntAAYT-~VD-~AE~~---~~~AyavNa~A~~~lA~~A~~~-----Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~nP 134 (317)
T TIGR01214 65 VNTAAYT-DVD-GAESD---PEKAYAVNALAPQNLARAAARV-----GARLVHISTDYVFDGDFGGEGKRPYREDDETNP 134 (317)
T ss_pred EECCHHC-CCC-CCCCC---HHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEEECEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 6230110-100-00377---7787657407899999999866-----915999863423447557888668876468798
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC--C----HHHHHH-CCCCCC----CCCCCH---HHHHHHHHH
Q ss_conf 36889899999999999999854438699755328837--9----779844-144432----458888---999999999
Q gi|254780337|r 165 WGAYSASKAAIEALARTWSKETVNTALRVINIDPGPTR--T----SMRAKA-MPAEDP----NTVPHP---QKVAKIISF 230 (257)
Q Consensus 165 ~~~Y~asKaal~~lt~~la~E~~~~gIrvn~I~PG~v~--T----~m~~~~-~~~~~~----~~~~~p---ediA~~v~f 230 (257)
T Consensus 135 lnvYG~SK~~GE~a~~~~~~~e~~lIvRTsWlY~~~g~~g~NF~~tMlrLaG~~~~~l~vV~DQ~GsPTy~~dLA~~~~~ 214 (317)
T TIGR01214 135 LNVYGQSKLAGEQAVRAAGPDENALIVRTSWLYGAGGGSGRNFVKTMLRLAGKEREELRVVDDQIGSPTYAKDLARAIAA 214 (317)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 43121115689999998379985788985213448998842179999985378998403785576873589999999999
Q ss_pred HHCHHH------CCCCCEEEECCCCEECCC
Q ss_conf 619756------266857987687631543
Q gi|254780337|r 231 LCATQK------IETGKLFSVPQNRFVNYL 254 (257)
Q Consensus 231 L~s~~~------~~tG~~~~vdgG~~~n~~ 254 (257)
T Consensus 215 ll~~~~Wdv~~~a~~~GvYH~~~~G~~SWy 244 (317)
T TIGR01214 215 LLERLNWDVEDAARARGVYHLANSGQVSWY 244 (317)
T ss_pred HHHHHCCCHHCCCCCCCEEEEEECCCCCHH
T ss_conf 997613340010136734677505431368