HHsearch alignment for GI: 254780337 and conserved domain: TIGR01214

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=98.76  E-value=9e-08  Score=72.11  Aligned_cols=209  Identities=21%  Similarity=0.227  Sum_probs=141.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             99993899868899999999889989999789899999999998649928999878999999999999999981898799
Q gi|254780337|r   20 LALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDIL   99 (257)
Q Consensus        20 ~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDil   99 (257)
T Consensus         1 rilitGa~GQlG~~L~~~l~~~g~~~~~~~~~-~~~~~~----------~~~~~~Dl~dP~~l~~~~r~~-----~Pd~v   64 (317)
T TIGR01214         1 RILITGANGQLGRELVQQLSKPGRVVVALTRS-TRLKLA----------ARWSQLDLTDPEALEELLRAI-----RPDAV   64 (317)
T ss_pred             CEEEECCCCHHHHHHHHHCCCCCCEEEEECCC-CCCCHH----------HHHHHHCCCCHHHHHHHHHHH-----CCCEE
T ss_conf             97887387567999999707888278643687-776113----------365440622468899999852-----87537


Q ss_pred             EECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC-----H----HHCCCCC------C
Q ss_conf             87687588888867659999999999998999999999999998608986999788-----3----5647889------8
Q gi|254780337|r  100 IANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSS-----G----AAYKCRP------L  164 (257)
Q Consensus       100 VNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS-----~----~g~~~~~------~  164 (257)
T Consensus        65 vntAAYT-~VD-~AE~~---~~~AyavNa~A~~~lA~~A~~~-----Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~nP  134 (317)
T TIGR01214        65 VNTAAYT-DVD-GAESD---PEKAYAVNALAPQNLARAAARV-----GARLVHISTDYVFDGDFGGEGKRPYREDDETNP  134 (317)
T ss_pred             EECCHHC-CCC-CCCCC---HHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEEECEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             6230110-100-00377---7787657407899999999866-----915999863423447557888668876468798


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC--C----HHHHHH-CCCCCC----CCCCCH---HHHHHHHHH
Q ss_conf             36889899999999999999854438699755328837--9----779844-144432----458888---999999999
Q gi|254780337|r  165 WGAYSASKAAIEALARTWSKETVNTALRVINIDPGPTR--T----SMRAKA-MPAEDP----NTVPHP---QKVAKIISF  230 (257)
Q Consensus       165 ~~~Y~asKaal~~lt~~la~E~~~~gIrvn~I~PG~v~--T----~m~~~~-~~~~~~----~~~~~p---ediA~~v~f  230 (257)
T Consensus       135 lnvYG~SK~~GE~a~~~~~~~e~~lIvRTsWlY~~~g~~g~NF~~tMlrLaG~~~~~l~vV~DQ~GsPTy~~dLA~~~~~  214 (317)
T TIGR01214       135 LNVYGQSKLAGEQAVRAAGPDENALIVRTSWLYGAGGGSGRNFVKTMLRLAGKEREELRVVDDQIGSPTYAKDLARAIAA  214 (317)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             43121115689999998379985788985213448998842179999985378998403785576873589999999999


Q ss_pred             HHCHHH------CCCCCEEEECCCCEECCC
Q ss_conf             619756------266857987687631543
Q gi|254780337|r  231 LCATQK------IETGKLFSVPQNRFVNYL  254 (257)
Q Consensus       231 L~s~~~------~~tG~~~~vdgG~~~n~~  254 (257)
T Consensus       215 ll~~~~Wdv~~~a~~~GvYH~~~~G~~SWy  244 (317)
T TIGR01214       215 LLERLNWDVEDAARARGVYHLANSGQVSWY  244 (317)
T ss_pred             HHHHHCCCHHCCCCCCCEEEEEECCCCCHH
T ss_conf             997613340010136734677505431368