HHsearch alignment for GI: 254780337 and conserved domain: TIGR01777

>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=98.54  E-value=6.3e-07  Score=66.47  Aligned_cols=204  Identities=17%  Similarity=0.139  Sum_probs=128.5

Q ss_pred             EEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             999389-9868899999999889989999789899999999998649928999878999999999999999981898799
Q gi|254780337|r   21 ALVTGS-SRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDIL   99 (257)
Q Consensus        21 alVTGa-s~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDil   99 (257)
T Consensus         1 ~litGgnTGfiG~~L~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----W-~----~l~~~Dav   71 (307)
T TIGR01777         1 ILITGGNTGFIGRALTQRLTKSGHEVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIAESG----W-S----ALEGADAV   71 (307)
T ss_pred             CEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHC----C-C----CCCCCCEE
T ss_conf             9641533023789999999847998999961686432000255445555221245207220----5-6----67886279


Q ss_pred             EECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCEEEEECCHHHCCCCCCCHHHHHHH--H
Q ss_conf             8768758888886765999999999999899999999999999860----898699978835647889836889899--9
Q gi|254780337|r  100 IANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKS----HCGRAIILSSGAAYKCRPLWGAYSASK--A  173 (257)
Q Consensus       100 VNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~----~~G~IInisS~~g~~~~~~~~~Y~asK--a  173 (257)
T Consensus        72 iNLAG~~-i~~P-~RWt~~~K~~i~~----SRi~~T~~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~~  145 (307)
T TIGR01777        72 INLAGEP-IADP-KRWTEERKQEIRD----SRIDTTRALVEAIAAAPRAEQKPKVFISASAVGYYGHSEDRVFTEEDASG  145 (307)
T ss_pred             EECCCCC-CCCC-CCCCHHHHHHHHH----CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCC
T ss_conf             8556888-5778-8878777575652----33478999999998465667887168850166630689982151166788


Q ss_pred             HHHHHHHHHHHHHH-------HHCCEEEEECCCCCCCH---HHHHHCC------------CCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999854-------43869975532883797---7984414------------44324588889999999996
Q gi|254780337|r  174 AIEALARTWSKETV-------NTALRVINIDPGPTRTS---MRAKAMP------------AEDPNTVPHPQKVAKIISFL  231 (257)
Q Consensus       174 al~~lt~~la~E~~-------~~gIrvn~I~PG~v~T~---m~~~~~~------------~~~~~~~~~pediA~~v~fL  231 (257)
T Consensus       146 ~~ddFla~lc~~WE~~A~~a~~~g~Rvv~~R~G~VLg~~GGaL~~m~~pf~~glGGplG~G~Q~~SWIH~~D~v~~I~~~  225 (307)
T TIGR01777       146 PGDDFLAELCRDWEEAAQAAEQLGTRVVLLRTGIVLGPKGGALAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFA  225 (307)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             87772189999999985105336873898764134708987034545667651574236884145053588999999999


Q ss_pred             HCHHHCCCC
Q ss_conf             197562668
Q gi|254780337|r  232 CATQKIETG  240 (257)
Q Consensus       232 ~s~~~~~tG  240 (257)
T Consensus       226 l~~-~~~~G  233 (307)
T TIGR01777       226 LEN-ASVSG  233 (307)
T ss_pred             HHC-CCCCC
T ss_conf             855-89963