HHsearch alignment for GI: 254780337 and conserved domain: TIGR01832
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase; InterPro: IPR011286 This entry describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (IPR002198 from INTERPRO). This protein has been characterised in Erwinia chrysanthemi as an enzyme of pectin degradation .; GO: 0008678 2-deoxy-D-gluconate 3-dehydrogenase activity, 0051287 NAD binding.
Probab=100.00 E-value=0 Score=391.65 Aligned_cols=232 Identities=24% Similarity=0.372 Sum_probs=219.3
Q ss_pred ECCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 524889999938998688999999998899899997-8989999999999864992899987899999999999999998
Q gi|254780337|r 14 VNLDNRLALVTGSSRGIGYYTALELARSGAYVIACG-RSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKR 92 (257)
Q Consensus 14 ~~l~~K~alVTGas~GIG~a~a~~la~~G~~Vi~~~-r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 92 (257)
T Consensus 1 FsL~GK~alvTGa~tGlGQG~a~gLA~AGadi~g~~~~~--~~~ET~~~v~~~Gr~f~~~~~Dl~~~~~~~~~~~~~~~~ 78 (249)
T TIGR01832 1 FSLEGKVALVTGANTGLGQGIAVGLAEAGADIVGVGHIS--EPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 78 (249)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHCCCEEHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 987877688825988736899999985774178514312--638889999982521000212122321378999999986
Q ss_pred HCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCHHHHHH
Q ss_conf 189879987687588888867659999999999998999999999999998608-9869997883564788983688989
Q gi|254780337|r 93 WGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSH-CGRAIILSSGAAYKCRPLWGAYSAS 171 (257)
Q Consensus 93 ~g~iDilVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~-~G~IInisS~~g~~~~~~~~~Y~as 171 (257)
T Consensus 79 ~g~~DiLVNNAGIIrR-~da~~f~e~dWd~V~nvNlk~vF~l~q~~a~~~l~~G~~GkiiNIAS~LSFQGGirVPsYTAS 157 (249)
T TIGR01832 79 FGKIDILVNNAGIIRR-EDAVEFSEKDWDDVMNVNLKSVFFLTQAAAKQFLKQGRGGKIINIASLLSFQGGIRVPSYTAS 157 (249)
T ss_pred HCCCCEEEECCCHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCCCCHHHHHH
T ss_conf 1886567607422104-577515614457999866899999999999999964899505751423442267551246666
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCH----------HHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHH-CCCC
Q ss_conf 999999999999985443869975532883797----------79844144432458888999999999619756-2668
Q gi|254780337|r 172 KAAIEALARTWSKETVNTALRVINIDPGPTRTS----------MRAKAMPAEDPNTVPHPQKVAKIISFLCATQK-IETG 240 (257)
Q Consensus 172 Kaal~~lt~~la~E~~~~gIrvn~I~PG~v~T~----------m~~~~~~~~~~~~~~~pediA~~v~fL~s~~~-~~tG 240 (257)
T Consensus 158 K~~v~GlTk~lAnEWa~~ginVNAIAPGY~~T~NT~~lRaD~~Rn~~Il~RIPaGrWG~p~D~~G~aVFLaS~ASdYv~G 237 (249)
T TIGR01832 158 KHGVAGLTKLLANEWAAKGINVNAIAPGYMETNNTQALRADEDRNAAILERIPAGRWGTPEDLGGAAVFLASSASDYVNG 237 (249)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 77777789999989987388153115887664551542031777899973178999848400030688887755434365
Q ss_pred CEEEECCC
Q ss_conf 57987687
Q gi|254780337|r 241 KLFSVPQN 248 (257)
Q Consensus 241 ~~~~vdgG 248 (257)
T Consensus 238 ~~l~VDGG 245 (249)
T TIGR01832 238 AILAVDGG 245 (249)
T ss_pred EEEEECCC
T ss_conf 06620773