HHsearch alignment for GI: 254780337 and conserved domain: TIGR01963
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=100.00 E-value=0 Score=469.63 Aligned_cols=233 Identities=24% Similarity=0.332 Sum_probs=222.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8999993899868899999999889989999789--89999999999864992899987899999999999999998189
Q gi|254780337|r 18 NRLALVTGSSRGIGYYTALELARSGAYVIACGRS--ISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGK 95 (257)
Q Consensus 18 ~K~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~--~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 95 (257)
T Consensus 1 ~ktalVTGaaSGIG~~iA~~LA~aGa~v~~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T~~~e~~~~~~~~~~~fG~ 80 (258)
T TIGR01963 1 GKTALVTGAASGIGLAIAKALAAAGANVVVNDLGEADEGAEAAAKVATDAGGSVIYLVADVTKEEEIADMIQAVAAEFGG 80 (258)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 94899965871678999999987298899846788789999999999961883577514788889999999999998568
Q ss_pred CCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCHHHCCCCCCCHHHHHHHHH
Q ss_conf 87998768758888886765999999999999899999999999999860898-69997883564788983688989999
Q gi|254780337|r 96 LDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCG-RAIILSSGAAYKCRPLWGAYSASKAA 174 (257)
Q Consensus 96 iDilVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G-~IInisS~~g~~~~~~~~~Y~asKaa 174 (257)
T Consensus 81 ~DiLVNNAG~Q-hVaPiEeFP~~~w~~iiav~LtsaF~t~raAlP~Mk~~gwGGRIiNIAS~HGLvASp~KSAYVAAKHG 159 (258)
T TIGR01963 81 LDILVNNAGIQ-HVAPIEEFPPEKWDRIIAVMLTSAFHTIRAALPHMKKQGWGGRIINIASVHGLVASPFKSAYVAAKHG 159 (258)
T ss_pred CCEEEECCCEE-ECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 87488446401-41765477866787373021688899997506432137855379971010000035321345677430
Q ss_pred HHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHC--------------------CCCCCCCCCCHHHHHHHHHHHHCH
Q ss_conf 999999999985443869975532883797798441--------------------444324588889999999996197
Q gi|254780337|r 175 IEALARTWSKETVNTALRVINIDPGPTRTSMRAKAM--------------------PAEDPNTVPHPQKVAKIISFLCAT 234 (257)
Q Consensus 175 l~~lt~~la~E~~~~gIrvn~I~PG~v~T~m~~~~~--------------------~~~~~~~~~~pediA~~v~fL~s~ 234 (257)
T Consensus 160 ~~GLTKv~ALE~A~~giT~NaiCPGYV~TPLV~~Qi~DqAk~rGi~eE~V~~~VmL~~~P~k~F~~~~e~A~~a~fLaS~ 239 (258)
T TIGR01963 160 LIGLTKVLALEVAAHGITANAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLKKQPTKRFVTVDEVAETALFLASD 239 (258)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf 21211555542047887586672875675546765899986518899888898607888984113799999999984173
Q ss_pred H-HCCCCCEEEECCCCEE
Q ss_conf 5-6266857987687631
Q gi|254780337|r 235 Q-KIETGKLFSVPQNRFV 251 (257)
Q Consensus 235 ~-~~~tG~~~~vdgG~~~ 251 (257)
T Consensus 240 ~A~~~TG~~~~~DGGWtA 257 (258)
T TIGR01963 240 AAAGITGQAIVLDGGWTA 257 (258)
T ss_pred HHHCCCCEEEEECCCEEC
T ss_conf 442366207886484332