HHsearch alignment for GI: 254780337 and conserved domain: TIGR02813
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA; InterPro: IPR004432 Members of this entry represent PfaA, which is involved in omega-3 polyunsaturated fatty acid biosynthesis, for example PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is found together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologues of PfaA, also included in this entry, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis; an alternative to the more familiar iterated mechanism of chain extension and desaturation, and like PfaA the more distant homologues are likewise found near genes for homologues of PfaB, PfaC, and/or PfaD..
Probab=96.89 E-value=0.045 Score=34.01 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=128.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 88999993899868899999999889989999789899999999998649928999878999999999999999981898
Q gi|254780337|r 17 DNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKL 96 (257)
Q Consensus 17 ~~K~alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 96 (257)
T Consensus 1900 ~~~~~~Vi~Ddg~~A~~la~~L~~~G~~Va~v-~s~~~v~~s~---~~l~s~i~~~~l~~~D~~~~~~~i~dI~~~~~~~ 1975 (2773)
T TIGR02813 1900 SKEAAVVIDDDGHNAGVLAEKLIAAGLQVAVV-RSPKVVVSSA---SPLDSEIASVTLEAIDDESIEAVIKDIEEKTAQI 1975 (2773)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCEEEEE-CCCCEEECCC---CHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23535888248852899999998689589997-3883222000---1000120025401120268999999999855443
Q ss_pred CEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHCCCCCCCHH--------
Q ss_conf 7998768758888886765999999999999899999999999999860-8986999788356478898368--------
Q gi|254780337|r 97 DILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKS-HCGRAIILSSGAAYKCRPLWGA-------- 167 (257)
Q Consensus 97 DilVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~-~~G~IInisS~~g~~~~~~~~~-------- 167 (257)
T Consensus 1976 ~g~I~LQ~l~~~-~~ad~~~a~~l~~~AK~s~~~AFl~AKl~~~~L~~~k~~~~Fv~Vsr~dGg~Gy~n~d~~~g~~~~k 2054 (2773)
T TIGR02813 1976 DGFIHLQPLATD-AKADKVDAIELVEAAKESVELAFLFAKLLKVKLAENKDRASFVTVSRIDGGFGYLNADEDVGALIVK 2054 (2773)
T ss_pred CEEEEECCCCHH-HCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 235563010100-0023002110178887889999999997567876430440067897316742335540123356666
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHH-HC---CEEEEECCCCC
Q ss_conf ----898999999999999998544-38---69975532883
Q gi|254780337|r 168 ----YSASKAAIEALARTWSKETVN-TA---LRVINIDPGPT 201 (257)
Q Consensus 168 ----Y~asKaal~~lt~~la~E~~~-~g---Irvn~I~PG~v 201 (257)
T Consensus 2055 anv~a~L~QAaL~GL~KTl~HEW~~gegsV~CR~lD~a~~L~ 2096 (2773)
T TIGR02813 2055 ANVKAELNQAALAGLTKTLNHEWNAGEGSVFCRALDVAPKLD 2096 (2773)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHH
T ss_conf 666777778776312332034436888327887553475123