HHsearch alignment for GI: 254780337 and conserved domain: cd05293
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.88 E-value=0.36 Score=27.98 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 89999938998688999999998899--89999789899999999998649---92899987899999999999999998
Q gi|254780337|r 18 NRLALVTGSSRGIGYYTALELARSGA--YVIACGRSISQLEKLKNALQKIN---KKIDIFAFDLRDSNALELTKTYIAKR 92 (257)
Q Consensus 18 ~K~alVTGas~GIG~a~a~~la~~G~--~Vi~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 92 (257)
T Consensus 4 ~Kv~II-Ga-G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~--~~d~~-----------~ 68 (312)
T cd05293 4 NKVTVV-GV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA--DKDYS-----------V 68 (312)
T ss_pred CEEEEE-CC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE--CCCHH-----------H
T ss_conf 869998-97-888999999999669988799993889833268888660401279855993--79999-----------9
Q ss_pred HCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECC
Q ss_conf 189879987687588888867659999999999998999999999999998608-986999788
Q gi|254780337|r 93 WGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSH-CGRAIILSS 155 (257)
Q Consensus 93 ~g~iDilVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~-~G~IInisS 155 (257)
T Consensus 69 ~~~aDvVVitAG~~~k~g----~~R~---dLl~~N~~----I~~~i~~~i~~~~p~~ivivvsN 121 (312)
T cd05293 69 TANSKVVIVTAGARQNEG----ESRL---DLVQRNVD----IFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred HCCCCEEEECCCCCCCCC----CCHH---HHHHHHHH----HHHHHHHHHHHCCCCCEEEECCC
T ss_conf 689999998899999989----8889---99998899----99999999884199846996689