HHsearch alignment for GI: 254780337 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=99.42 E-value=8.5e-11 Score=92.37 Aligned_cols=190 Identities=17% Similarity=0.184 Sum_probs=125.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99938998688999999998899899997898999999999986499289998789999999999999999818987998
Q gi|254780337|r 21 ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNALELTKTYIAKRWGKLDILI 100 (257)
Q Consensus 21 alVTGas~GIG~a~a~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDilV 100 (257)
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~~v~~~~r~---------------------~~D~~d~~~l~~~~~~~-----~pd~Vi 54 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGVEVVALDRP---------------------ELDLTDPEAVAALVREA-----RPDVVV 54 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCC---------------------CCCCCCHHHHHHHHHHC-----CCCEEE
T ss_conf 6996489989999999998689989995486---------------------25788999999999864-----997999
Q ss_pred ECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-----------CCHHHH
Q ss_conf 768758888886765999999999999899999999999999860898699978835647889-----------836889
Q gi|254780337|r 101 ANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRP-----------LWGAYS 169 (257)
Q Consensus 101 NNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~~~~~~m~~~~~G~IInisS~~g~~~~~-----------~~~~Y~ 169 (257)
T Consensus 55 hlAa~~-~~~~----~~~~~~~~~~~Nv~~t~~l~~~~~~----~~-~~~i~~Ss~~Vy~g~~~~p~~E~~~~~P~~~Yg 124 (284)
T pfam04321 55 NAAAYT-AVDK----AESEPELAYAVNALGPGNLAEACAA----RG-APLIHISTDYVFDGAKGGPYREDDPTGPLNVYG 124 (284)
T ss_pred ECCCCC-CCHH----HHHCHHHHHHHHHHHHHHHHHHHHH----CC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 724135-5567----7748888998759999999999874----49-857984175300068998854577778988016
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC----CC----HHHHHHCCCCC-------CCCCCCHHHHHHHHHHHHCH
Q ss_conf 89999999999999985443869975532883----79----77984414443-------24588889999999996197
Q gi|254780337|r 170 ASKAAIEALARTWSKETVNTALRVINIDPGPT----RT----SMRAKAMPAED-------PNTVPHPQKVAKIISFLCAT 234 (257)
Q Consensus 170 asKaal~~lt~~la~E~~~~gIrvn~I~PG~v----~T----~m~~~~~~~~~-------~~~~~~pediA~~v~fL~s~ 234 (257)
T Consensus 125 ~sK~~~E~~~~~~~~-------~~~IlR~~~vyG~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~~~v~D~a~~~~~~~e~ 197 (284)
T pfam04321 125 RTKLAGEQAVLAANP-------RHLILRTAWVYGEYGNNFVKTMLRLAAERDELRVVDDQLGSPTSARDLADALLALIRK 197 (284)
T ss_pred HHHHHHHHHHHHHCC-------CCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCEEHHHHHHHHHHHHHH
T ss_conf 575899999997253-------4607877344288887889999999862898268537568969899999999999982
Q ss_pred H-H-CCCCCEEEECCCCEECC
Q ss_conf 5-6-26685798768763154
Q gi|254780337|r 235 Q-K-IETGKLFSVPQNRFVNY 253 (257)
Q Consensus 235 ~-~-~~tG~~~~vdgG~~~n~ 253 (257)
T Consensus 198 ~~~~~~~~giyNi~~~~~~s~ 218 (284)
T pfam04321 198 RLRGPALAGTYHLAGSGETSW 218 (284)
T ss_pred CCCCCCCCCCEEECCCCCEEH
T ss_conf 033777776137418984409