RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780337|ref|YP_003064750.1| oxidoreductase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (257 letters)



>gnl|CDD|31231 COG1028, FabG, Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) [Secondary
           metabolites biosynthesis, transport, and catabolism /
           General function prediction only].
          Length = 251

 Score =  136 bits (343), Expect = 6e-33
 Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 20/248 (8%)

Query: 15  NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQ--LEKLKNALQKI-NKKIDI 71
           +L  ++ALVTG+S GIG   A  LAR GA V+   R   +   E L  A+++    +   
Sbjct: 2   DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAA 61

Query: 72  FAFDLRDS-NALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMA 130
            A D+ D   ++E       + +G++DIL+ NAGI G  +P+ ++ E+ +  VI VN++ 
Sbjct: 62  VAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLG 121

Query: 131 NWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTA 190
            + + R+  P +KK    R + +SS A     P   AY+ASKAA+  L +  + E     
Sbjct: 122 AFLLTRAALPLMKK---QRIVNISSVAGLGGPPGQAAYAASKAALIGLTKALALELAPRG 178

Query: 191 LRVINIDPGPTRTSMRAKAMPAEDPNT-----------VPHPQKVAKIISFLCATQKIE- 238
           +RV  + PG   T M A    AE               +  P++VA  ++FL + +    
Sbjct: 179 IRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAASY 238

Query: 239 -TGKLFSV 245
            TG+   V
Sbjct: 239 ITGQTLPV 246


>gnl|CDD|33946 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown
           specificity [General function prediction only].
          Length = 246

 Score =  128 bits (324), Expect = 1e-30
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 12/225 (5%)

Query: 15  NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAF 74
            L  ++AL+TG+S GIG  TA  LA +GA V+   R   +LE L + +          A 
Sbjct: 3   TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA--GAALALAL 60

Query: 75  DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI 134
           D+ D  A+E     + + +G++DIL+ NAG L    P+ +     +  +I  NV    N 
Sbjct: 61  DVTDRAAVEAAIEALPEEFGRIDILVNNAG-LALGDPLDEADLDDWDRMIDTNVKGLLNG 119

Query: 135 MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194
            R+  P + +   G  I L S A     P    Y A+KAA+ A +    +E   T +RV 
Sbjct: 120 TRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVT 179

Query: 195 NIDPGPTRTSMRA---------KAMPAEDPNTVPHPQKVAKIISF 230
            I PG   T+  +         +A       T   P+ +A+ + F
Sbjct: 180 VISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLF 224


>gnl|CDD|35944 KOG0725, KOG0725, KOG0725, Reductases with broad range of substrate
           specificities [General function prediction only].
          Length = 270

 Score =  126 bits (317), Expect = 6e-30
 Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 21/238 (8%)

Query: 16  LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKIN---KKIDIF 72
           L  ++ALVTG S GIG   AL LA++GA V+  GRS  +LE+    L  +     K+   
Sbjct: 6   LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAI 65

Query: 73  AFDLRD-SNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMAN 131
             D+    +  +L +  + K +GK+DIL+ NAG LG    I  + E+ F  +++ N+  +
Sbjct: 66  VCDVSKEVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGS 125

Query: 132 WNIMRSF-DPWLKKSHCGRAIILSSGAAYK-CRPLWGAYSASKAAIEALARTWSKETVNT 189
              ++    P LKKS  G  + +SS A          AY  SKAA+  L R+ +KE    
Sbjct: 126 AFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGVAYGVSKAALLQLTRSLAKELAKH 185

Query: 190 ALRVINIDPGPTRTSMRAKAMPAED----------PNTVP-----HPQKVAKIISFLC 232
            +RV ++ PG  +TS+RA  +   +             VP      P++VA+  +FL 
Sbjct: 186 GIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFLA 243


>gnl|CDD|36419 KOG1205, KOG1205, KOG1205, Predicted dehydrogenase [Secondary
           metabolites biosynthesis, transport and catabolism].
          Length = 282

 Score =  122 bits (308), Expect = 8e-29
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 4/210 (1%)

Query: 15  NLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKI--NKKIDIF 72
            L  ++ L+TG+S GIG   A ELA+ GA ++   R   +LE++   L+K+   +K+ + 
Sbjct: 9   RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVL 68

Query: 73  AFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANW 132
             D+ D  +++    +  + +G++D+L+ NAGI      +     +   +V+  NV    
Sbjct: 69  QLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISLV-GFLEDTDIEDVRNVMDTNVFGTV 127

Query: 133 NIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALR 192
            + ++  P +KK + G  +++SS A     P    YSASK A+E    T  +E +     
Sbjct: 128 YLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKHALEGFFETLRQELIPLGTI 187

Query: 193 V-INIDPGPTRTSMRAKAMPAEDPNTVPHP 221
           + I + PGP  T    K +  E+  +   P
Sbjct: 188 IIILVSPGPIETEFTGKELLGEEGKSQQGP 217


>gnl|CDD|30648 COG0300, DltE, Short-chain dehydrogenases of various substrate
           specificities [General function prediction only].
          Length = 265

 Score =  120 bits (302), Expect = 5e-28
 Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 16  LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNAL-QKINKKIDIFAF 74
           +  + AL+TG+S GIG   A +LAR G  +I   R   +LE L   L  K   ++++   
Sbjct: 4   MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPA 63

Query: 75  DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI 134
           DL D  ALE  +  + +R G +D+L+ NAG  G+  P  ++      ++I +N++A   +
Sbjct: 64  DLSDPEALERLEDELKERGGPIDVLVNNAGF-GTFGPFLELSLDEEEEMIQLNILALTRL 122

Query: 135 MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194
            ++  P + +   G  I + S A     P    YSA+KA + + +    +E   T ++V 
Sbjct: 123 TKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREELKGTGVKVT 182

Query: 195 NIDPGPTRTSM----RAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETGKLFSVP 246
            + PGPTRT       +          V  P+ VA+          +E GK   +P
Sbjct: 183 AVCPGPTRTEFFDAKGSDVYLLSPGELVLSPEDVAEAALKA-----LEKGKREIIP 233


>gnl|CDD|143883 pfam00106, adh_short, short chain dehydrogenase.  This family
           contains a wide variety of dehydrogenases.
          Length = 167

 Score = 99.2 bits (248), Expect = 1e-21
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 21  ALVTGSSRGIGYYTALELARSGAYVIA-CGRSIS--QLEKLKNALQKINKKIDIFAFDLR 77
            L+TG + G+G   A  LA  GA  +    R        +L   L+ +  ++ + A D+ 
Sbjct: 3   VLITGGTGGLGLALARWLAAEGARHLVLVSRRGDAPGAAELVAELEALGAEVTVAACDVA 62

Query: 78  DSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRS 137
           D +AL      +    G LD ++ NAG+L    P+ ++  + F  V++  V   WN+   
Sbjct: 63  DRDALAALLAALPAALGPLDGVVHNAGVLDD-GPLEELTPERFERVLAPKVTGAWNLHEL 121

Query: 138 FDPWLKKSHCGRAIIL-SSGAAYKCRPLWGAYSASKAAIEALARTWSKE 185
                       A +L SS A     P    Y+A+ AA++ALA     E
Sbjct: 122 TLD-----LDLGAFVLFSSVAGVLGSPGQANYAAANAALDALAEHRRAE 165


>gnl|CDD|36422 KOG1208, KOG1208, KOG1208, Dehydrogenases with different
           specificities (related to short-chain alcohol
           dehydrogenases) [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 314

 Score = 98.1 bits (244), Expect = 2e-21
 Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 28/256 (10%)

Query: 13  HVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIF 72
            ++L  ++ALVTG++ GIG+ TA ELA  GA+V+   R+  + E+ K  +QK      I 
Sbjct: 30  GIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIR 89

Query: 73  AF--DLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMA 130
               DL    ++        K+ G LD+LI NAG++    P + + +       + N + 
Sbjct: 90  VIQLDLSSLKSVRKFAEEFKKKEGPLDVLINNAGVMA---PPFSLTKDGLELTFATNYLG 146

Query: 131 NWNIMRSFDPWLKKSHCGRAIILSSGAA------YKCRPLWG-------AYSASKAAIEA 177
           ++ +     P LK+S   R + +SS                        AY+ SK A   
Sbjct: 147 HFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAKLYSSDAAYALSKLANVL 206

Query: 178 LARTWSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQ-- 235
           LA   +K  +   +   ++ PG  +T+  ++               + K      AT   
Sbjct: 207 LANELAKR-LKKGVTTYSVHPGVVKTTGLSRVNLLLRLLAKKLSWPLTKSPEQGAATTCY 265

Query: 236 -------KIETGKLFS 244
                  +  +GK F 
Sbjct: 266 AALSPELEGVSGKYFE 281


>gnl|CDD|36423 KOG1209, KOG1209, KOG1209, 1-Acyl dihydroxyacetone phosphate
           reductase and related dehydrogenases [Secondary
           metabolites biosynthesis, transport and catabolism].
          Length = 289

 Score = 96.3 bits (239), Expect = 7e-21
 Identities = 59/200 (29%), Positives = 83/200 (41%), Gaps = 6/200 (3%)

Query: 20  LALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDS 79
           + +   SS GIGY  A E AR+G  V A  R +  + +L         K+D+     +  
Sbjct: 10  VLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDV----SKPE 65

Query: 80  NALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFD 139
             + ++    A   GKLD+L  NAG      P       +      VNV  +  + R+  
Sbjct: 66  EVVTVSGEVRANPDGKLDLLYNNAGQ-SCTFPALDATIAAVEQCFKVNVFGHIRMCRALS 124

Query: 140 PWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVINIDPG 199
            +L K+  G  + + S A     P    YSASKAAI A ART   E     +RVIN   G
Sbjct: 125 HFLIKAK-GTIVNVGSLAGVVPFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITG 183

Query: 200 PTRTSMRAKAMPAEDPNTVP 219
              T +  K +P       P
Sbjct: 184 GVATDIADKRLPETTIYNFP 203


>gnl|CDD|36232 KOG1014, KOG1014, KOG1014, 17 beta-hydroxysteroid dehydrogenase
           type 3, HSD17B3 [Lipid transport and metabolism].
          Length = 312

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 8/238 (3%)

Query: 21  ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINK-KIDIFAFDL-RD 78
           A+VTG++ GIG   A ELA+ G  V+   R+  +LE +   +++  K ++ I A D  + 
Sbjct: 52  AVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKG 111

Query: 79  SNALELTKTYIAKRWGKLDILIANAGIL-GSISPIWQIKEKSFADVISVNVMANWNIMRS 137
               E     +A     + IL+ N G+         +  E    ++I+VN+++   + + 
Sbjct: 112 DEVYEKLLEKLAG--LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQL 169

Query: 138 FDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVINID 197
             P + +   G  + + S A     PL   YSASKA ++  +R   KE  +  + V ++ 
Sbjct: 170 ILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVI 229

Query: 198 PGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETGKLFSVPQNRFVNYLT 255
           P    T M     P      VP P+  AK            TG L    Q   +  L 
Sbjct: 230 PYLVATKMAKYRKP---SLFVPSPETFAKSALNTIGNASETTGYLNHAIQVLLITLLP 284


>gnl|CDD|36415 KOG1201, KOG1201, KOG1201, Hydroxysteroid 17-beta dehydrogenase 11
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 300

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 18  NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAF--D 75
             + L+TG   G+G   ALE A+ GA ++    +    E+    ++KI +     A+  D
Sbjct: 38  GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGE---AKAYTCD 94

Query: 76  LRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIM 135
           + D   +      + K  G +DIL+ NAGI+ +   +    ++       VN +A++   
Sbjct: 95  ISDREEIYRLAKKVKKEVGDVDILVNNAGIV-TGKKLLDCSDEEIQKTFDVNTIAHFWTT 153

Query: 136 RSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVIN 195
           ++F P + +++ G  + ++S A          Y ASK A      + S E        I 
Sbjct: 154 KAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKFAAVGFHESLSMELRALGKDGIK 213

Query: 196 ---IDPGPTRTSMRAKAMPAEDPNTVPHPQKVAKIISFLCATQKIETGKLF 243
              + P    T M   A P      +  P+ VAK I      + I T +  
Sbjct: 214 TTLVCPYFINTGMFDGATPFPTLAPLLEPEYVAKRI-----VEAILTNQAG 259


>gnl|CDD|36424 KOG1210, KOG1210, KOG1210, Predicted 3-ketosphinganine reductase
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 331

 Score = 79.6 bits (196), Expect = 8e-16
 Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 16/224 (7%)

Query: 18  NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQ--KINKKIDIFAFD 75
            R  L+TG S G+G   ALE  R GA V    RS  +L + K  L+     + +   + D
Sbjct: 33  RRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVD 92

Query: 76  LRDSNALELTKTYIAKRWGKLDILIANAG--ILGSISPIWQIKEKSFADVISVNVMANWN 133
           + D +++      +    G +D L   AG  + G       +  +    ++ VN +   N
Sbjct: 93  VIDYDSVSKVIEELRDLEGPIDNLFCCAGVAVPGLFE---DLSPEVVEKLMDVNYLGTVN 149

Query: 134 IMRSFDPWLKK-SHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALR 192
           + ++    +KK  H GR I++SS  A      + AYS SK A+  LA    +E +   + 
Sbjct: 150 VAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALRGLAEALRQELIKYGVH 209

Query: 193 VINIDPGPTRT---SMRAKAMPA-----EDPNTVPHPQKVAKII 228
           V    P  T T       K  P      E  ++V   +++AK I
Sbjct: 210 VTLYYPPDTLTPGFERENKTKPEETKIIEGGSSVIKCEEMAKAI 253


>gnl|CDD|36418 KOG1204, KOG1204, KOG1204, Predicted dehydrogenase [Secondary
           metabolites biosynthesis, transport and catabolism].
          Length = 253

 Score = 79.2 bits (195), Expect = 9e-16
 Identities = 49/191 (25%), Positives = 71/191 (37%), Gaps = 13/191 (6%)

Query: 22  LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNA 81
           L+TG+SRGIG  +   +       +  G +    E L+               D+ +   
Sbjct: 10  LLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKVAYGDDFVHVVGDITEEQL 68

Query: 82  LELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI--MRSFD 139
           L   +    K+ GK DI+I NAG LG +S           D        + N+  M S  
Sbjct: 69  LGALREAPRKKGGKRDIIIHNAGSLGDVSKG----AVDLGDSDQWKKYWDLNLFSMVSLV 124

Query: 140 PWLKKSHCGR-----AIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTALRVI 194
            W              + +SS AA +    W AY +SKAA        + E     +RV+
Sbjct: 125 QWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYCSSKAARNMYFMVLASEEPFD-VRVL 183

Query: 195 NIDPGPTRTSM 205
           N  PG   T M
Sbjct: 184 NYAPGVVDTQM 194


>gnl|CDD|36823 KOG1610, KOG1610, KOG1610, Corticosteroid 11-beta-dehydrogenase and
           related short chain-type dehydrogenases [Secondary
           metabolites biosynthesis, transport and catabolism,
           General function prediction only].
          Length = 322

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 7/195 (3%)

Query: 14  VNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFA 73
            +L ++  L+TG   G G   A +L + G  V A   +    E L+   +  + ++    
Sbjct: 25  DSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLR--GETKSPRLRTLQ 82

Query: 74  FDLRDSNALELTKTYIAKRWGK--LDILIANAGILGSISPI-WQIKEKSFADVISVNVMA 130
            D+    +++    ++ K  G+  L  L+ NAGI G + P  W   E  +  V++VN++ 
Sbjct: 83  LDVTKPESVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVE-DYRKVLNVNLLG 141

Query: 131 NWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTA 190
              + ++F P L+++  GR + +SS       P  G Y  SK A+EA + +  +E     
Sbjct: 142 TIRVTKAFLPLLRRAR-GRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRRELRPFG 200

Query: 191 LRVINIDPGPTRTSM 205
           ++V  I+PG  +T++
Sbjct: 201 VKVSIIEPGFFKTNL 215


>gnl|CDD|36414 KOG1200, KOG1200, KOG1200, Mitochondrial/plastidial
           beta-ketoacyl-ACP reductase [Lipid transport and
           metabolism].
          Length = 256

 Score = 74.6 bits (183), Expect = 2e-14
 Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 12/232 (5%)

Query: 10  SEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKI 69
            E+   L +++A VTG S GIG   A  LA+ GA V       +  E     L       
Sbjct: 6   GEVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHS 65

Query: 70  DIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVM 129
             F+ D+  ++ ++ T   + K  G   +L+  AGI      + ++K++ +  VI+VN+ 
Sbjct: 66  A-FSCDVSKAHDVQNTLEEMEKSLGTPSVLVNCAGITRD-GLLLRMKQEQWDSVIAVNLT 123

Query: 130 ANWNIMRSF--DPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETV 187
             + + ++      + +      I +SS            Y+ASK  +    +T ++E  
Sbjct: 124 GVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAASKGGVIGFTKTAARELA 183

Query: 188 NTALRVINIDPGPTRTSMRAKAMP---AEDPNTVP-----HPQKVAKIISFL 231
              +RV  + PG   T M     P    +    +P       ++VA ++ FL
Sbjct: 184 RKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANLVLFL 235


>gnl|CDD|33748 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine
           esterification of lipoteichoic acid and wall teichoic
           acid (D-alanine transfer protein) [Cell envelope
           biogenesis, outer membrane].
          Length = 245

 Score = 74.2 bits (182), Expect = 4e-14
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 11/207 (5%)

Query: 14  VNLDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFA 73
           +       L+TG + GIG   A      G  VI CGR+  +L + K    +I+       
Sbjct: 1   MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHT----EV 56

Query: 74  FDLRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKE--KSFADVISVNVMAN 131
            D+ D ++      ++ K +  L++LI NAGI  +   +   ++        I+ N++A 
Sbjct: 57  CDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNED-LTGAEDLLDDAEQEIATNLLAP 115

Query: 132 WNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKETVNTAL 191
             +     P L +      I +SSG A+        Y A+KAAI +      ++  +T++
Sbjct: 116 IRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKAAIHSYTLALREQLKDTSV 175

Query: 192 RVINIDP----GPTRTSMRAKAMPAED 214
            VI + P         +     MP   
Sbjct: 176 EVIELAPPLVDTTEGNTQARGKMPLSA 202


>gnl|CDD|36421 KOG1207, KOG1207, KOG1207, Diacetyl reductase/L-xylulose reductase
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 245

 Score = 73.2 bits (179), Expect = 7e-14
 Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 19/196 (9%)

Query: 16  LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFD 75
           L   + LVTG+  GIG    L LA++GA VIA  R+ + L  L   +++    I     D
Sbjct: 5   LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSL---VKETPSLIIPIVGD 61

Query: 76  LRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNI- 134
           L    AL      +      +D L+ NAG+  +  P  +I ++SF    +VNV A   + 
Sbjct: 62  LSAWEALF---KLLVPV-FPIDGLVNNAGV-ATNHPFGEITQQSFDRTFAVNVRAVILVA 116

Query: 135 ---MRSFDPWLKKSHCGRAIILSSGAAYKCRPLWG--AYSASKAAIEALARTWSKETVNT 189
               R+      K   G  + +SS A+   RPL     Y A+KAA++ L +  + E    
Sbjct: 117 QLVARNLVDRQIK---GAIVNVSSQASI--RPLDNHTVYCATKAALDMLTKCLALELGPQ 171

Query: 190 ALRVINIDPGPTRTSM 205
            +RV +++P    T M
Sbjct: 172 KIRVNSVNPTVVMTDM 187


>gnl|CDD|39371 KOG4169, KOG4169, KOG4169, 15-hydroxyprostaglandin dehydrogenase
           and related dehydrogenases [Lipid transport and
           metabolism, General function prediction only].
          Length = 261

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 17/197 (8%)

Query: 16  LDNRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFD 75
           L  + ALVTG + GIG  T+  L   G  V+    S    E +   LQ IN  + +    
Sbjct: 3   LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIA-KLQAINPSVSVIFIK 61

Query: 76  LRDSNALELTKTY--IAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWN 133
              +N  +L   +  I   +G +DILI  AGIL          +K +   I+VN+    N
Sbjct: 62  CDVTNRGDLEAAFDKILATFGTIDILINGAGIL---------DDKDWERTINVNLTGVIN 112

Query: 134 IMRSFDPWLKKSHCGRAII---LSSGAAYKCRPLWGAYSASKAAIEALARTWSKETV--N 188
             +   P++ K   G+  I   +SS A     P++  Y+ASKA +    R+ +       
Sbjct: 113 GTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVVGFTRSLADLAYYQR 172

Query: 189 TALRVINIDPGPTRTSM 205
           + +R   + PG TRT +
Sbjct: 173 SGVRFNAVCPGFTRTDL 189


>gnl|CDD|36824 KOG1611, KOG1611, KOG1611, Predicted short chain-type dehydrogenase
           [General function prediction only].
          Length = 249

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 18/202 (8%)

Query: 22  LVTGSSRGIGYYTALEL-ARSGAYVIACG-RSISQLEKLKNALQKINKKIDIFAFDLRDS 79
            +TG++RGIG     EL    G  VI    R   +         K + ++ I   D+   
Sbjct: 7   FITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCD 66

Query: 80  NALELTKTYIAKRWG--KLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRS 137
            +++     + K  G   L++LI NAGI  S + + +       +    N +    + ++
Sbjct: 67  ESIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQA 126

Query: 138 FDPWLKKSH---------CGRAIIL----SSGAAYKCRPL-WGAYSASKAAIEALARTWS 183
           F P LKK+            RA I+    S+G+    RP    AY  SKAA+   A++ S
Sbjct: 127 FLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGGFRPGGLSAYRMSKAALNMFAKSLS 186

Query: 184 KETVNTALRVINIDPGPTRTSM 205
            +  +  + V++I PG  +T M
Sbjct: 187 VDLKDDHILVVSIHPGWVQTDM 208


>gnl|CDD|36413 KOG1199, KOG1199, KOG1199, Short-chain alcohol
           dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary
           metabolites biosynthesis, transport and catabolism].
          Length = 260

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 29/240 (12%)

Query: 18  NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKI-DIFAFDL 76
             +ALVTG + G+G  TA  LA+ GA V      +  L + K A   + K++     F  
Sbjct: 9   GLVALVTGGASGLGKATAERLAKQGASVA-----LLDLPQSKGA--DVAKELGGKVVFTP 61

Query: 77  RDSNALELTKTYIAK---RWGKLDILIANAGILGSISPIWQIKEK------SFADVISVN 127
            D  + +  +  +AK   ++G+LD L+  AGI       + +++K       F  VI VN
Sbjct: 62  ADVTSEKDVRAALAKAKAKFGRLDALVNCAGI-AYAFKTYNVQKKKHHDLEDFQRVIDVN 120

Query: 128 VMANWNIMRSFDPWL----KKSHCGRAIIL--SSGAAYKCRPLWGAYSASKAAIEALART 181
           V+  +N++R     +       +  R +I+  +S AA+  +    AYSASK AI  +   
Sbjct: 121 VLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTGQAAYSASKGAIVGMTLP 180

Query: 182 WSKETVNTALRVINIDPGPTRTSMRAKAMPAEDPN----TVPHPQKVAKIISFLCATQKI 237
            +++     +R   I PG   T + + ++P +  +     +P P ++     +    Q I
Sbjct: 181 IARDLAGDGIRFNTIAPGLFDTPLLS-SLPEKVKSFLAQLIPFPSRLGHPHEYAHLVQAI 239


>gnl|CDD|30968 COG0623, FabI, Enoyl-[acyl-carrier-protein].
          Length = 259

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 14/197 (7%)

Query: 15  NLDNRLALVTG--SSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKID-- 70
            L+ +  L+ G  ++R I +  A  LA  GA +        Q E+L+  ++++ +++   
Sbjct: 3   LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTY----QGERLEKRVEELAEELGSD 58

Query: 71  -IFAFDLRDSNALELTKTYIAKRWGKLDIL---IANAGILGSISPIWQIKEKSFADVISV 126
            +   D+ +  +++     I K+WGKLD L   IA A              + F   + +
Sbjct: 59  LVLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDI 118

Query: 127 NVMANWNIMRSFDPWLKKSHCGRAIILSSGAAYKCRPLWGAYSASKAAIEALARTWSKET 186
           +  +   + ++  P +     G  + L+   + +  P +     +KAA+EA  R  + + 
Sbjct: 119 SAYSFTALAKAARPLMNNG--GSILTLTYLGSERVVPNYNVMGVAKAALEASVRYLAADL 176

Query: 187 VNTALRVINIDPGPTRT 203
               +RV  I  GP RT
Sbjct: 177 GKEGIRVNAISAGPIRT 193


>gnl|CDD|30800 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
           envelope biogenesis, outer membrane / Carbohydrate
           transport and metabolism].
          Length = 314

 Score = 51.9 bits (123), Expect = 2e-07
 Identities = 42/204 (20%), Positives = 67/204 (32%), Gaps = 37/204 (18%)

Query: 22  LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNA 81
           LVTG +  IG +    L  +G  V    R    L+ L          ++    DL D + 
Sbjct: 4   LVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL-------LSGVEFVVLDLTDRDL 56

Query: 82  LELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPW 141
           ++          G  D +I  A      S +        A+ + VNV    N++      
Sbjct: 57  VD------ELAKGVPDAVIHLAA----QSSVPDSNASDPAEFLDVNVDGTLNLLE----A 102

Query: 142 LKKSHCGRAIILSSGAAY--KCRPLW-----------GAYSASKAAIEALARTWSKETVN 188
            + +   R +  SS +       PL              Y  SK A E L R +++    
Sbjct: 103 ARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGL 162

Query: 189 --TALRVINIDPGPTRTSMRAKAM 210
               LR  N+  GP      +  +
Sbjct: 163 PVVILRPFNV-YGPGDKPDLSSGV 185


>gnl|CDD|144821 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
           This family of proteins utilize NAD as a cofactor. The
           proteins in this family use nucleotide-sugar substrates
           for a variety of chemical reactions.
          Length = 235

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 30/176 (17%)

Query: 21  ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSN 80
            LVTG +  IG      L + G  VI  GR          +L     +      DL D +
Sbjct: 1   ILVTGGTGFIGSALVRRLLQEGYEVIVLGRRRRS-----ESLNTGRIRFRFHEGDLTDPD 55

Query: 81  ALELTKTYIAKRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDP 140
           ALE     +A+   + D +I     L + S +    E   A+ I  NV+   N++     
Sbjct: 56  ALE---RLLAE--VQPDAVI----HLAAQSGVGASFEDP-AEFIRANVLGTLNLLE---- 101

Query: 141 WLKKSHCGRAIILSSGAAY-KCRPL----------WGAYSASKAAIEALARTWSKE 185
             +++   R +  SS   Y                   Y+A+K A E L   +++ 
Sbjct: 102 AARRAGVKRFVFASSSEVYGDVADPPITEDTPLGPLSPYAAAKLAGERLVLAYARA 157


>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group is a member of the medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, but lacks the zinc-binding
           sites of the zinc-dependent alcohol dehydrogenases. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 305

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 19  RLALVTGSSRGIGYYTALELA-RSGAYVIACGRSISQLEKLKNA 61
           R  LVTG+S G+G + A++LA  +GA+V+A   S ++ E L+  
Sbjct: 134 RRVLVTGASGGVGRF-AVQLAALAGAHVVAVVGSPARAEGLREL 176


>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene
           tetrahydromethanopterin dehydrogenase.  Methylene
           Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP
           binding domain. NADP-dependent H4MPT DH catalyzes the
           dehydrogenation of methylene- H4MPT and
           methylene-tetrahydrofolate (H4F) with NADP+ as cofactor.
           H4F and H4MPT are both cofactors that carry the
           one-carbon units between the formyl and methyl oxidation
           level. H4F and H4MPT are structurally analogous to each
           other with respect to the pterin moiety, but each has
           distinct side chain. H4MPT is present only in anaerobic
           methanogenic archaea and aerobic methylotrophic
           proteobacteria. H4MPT seems to have evolved
           independently from H4F and functions as a distinct
           carrier in C1 metabolism. Amino acid DH-like
           NAD(P)-binding domains are members of the Rossmann fold
           superfamily and include glutamate, leucine, and
           phenylalanine DHs, methylene tetrahydrofolate DH,
           methylene-tetrahydromethanopterin DH,
           methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
           DH-like proteins, malate oxidoreductases, and glutamyl
           tRNA reductase. Amino acid DHs catalyze the deamination
           of amino acids to keto acids with NAD(P)+ as a cofactor.
           The NAD(P)-binding Rossmann fold superfamily includes a
           wide variety of protein families including NAD(P)-
           binding domains of alcohol DHs, tyrosine-dependent
           oxidoreductases, glyceraldehyde-3-phosphate DH,
           lactate/malate DHs, formate/glycerate DHs, siroheme
           synthases, 6-phosphogluconate DH, amino acid DHs,
           repressor rex, NAD-binding potassium channel  domain,
           CoA-binding, and ornithine cyclodeaminase-like domains.
           These domains have an alpha-beta-alpha configuration.
           NAD binding involves numerous hydrogen and van der Waals
           contacts.
          Length = 194

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 21  ALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINK--KIDIFAFDLRD 78
           A+V G +  +G   A+ LAR GA V+  GR    LE+ + A   +       + A +  D
Sbjct: 31  AVVLGGTGPVGQRAAVLLAREGARVVLVGR---DLERAQKAADSLRARFGEGVGAVETSD 87

Query: 79  -SNALELTKTYIAKRWGKLDILIAN--AGILGSISPIWQIKEKSFADVISVNV 128
            +      K          D++ A   AG+       W    K  A    VN 
Sbjct: 88  DAARAAAIKG--------ADVVFAAGAAGVELLEKLAWA--PKPLAVAADVNA 130


>gnl|CDD|36715 KOG1502, KOG1502, KOG1502, Flavonol reductase/cinnamoyl-CoA
           reductase [Defense mechanisms].
          Length = 327

 Score = 36.8 bits (85), Expect = 0.006
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 51/210 (24%)

Query: 18  NRLALVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKN--ALQKINKKIDIFAFD 75
            +   VTG+S  IG +    L   G  V    R     +K ++   L+   +++ +F  D
Sbjct: 6   GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKAD 65

Query: 76  LRDSNALELTKTYIAKRWGKLDILIAN-AGILGSISPIWQIKEKSFADVISVNVMANWNI 134
           L D  +               D  I    G+  + SP+    E    ++I   V    N+
Sbjct: 66  LLDEGS--------------FDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNV 111

Query: 135 MRSFDPWLKKSHCGRAIILSSGAA-------------------------YKCRPLWGAYS 169
           + +     KK+   + ++ +S  A                          +C+ LW  Y+
Sbjct: 112 LEA----CKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLW--YA 165

Query: 170 ASKAAIEALARTWSKETVNTALRVINIDPG 199
            SK   E  A  ++KE     L ++ I+PG
Sbjct: 166 LSKTLAEKAAWEFAKENG---LDLVTINPG 192


>gnl|CDD|36691 KOG1478, KOG1478, KOG1478, 3-keto sterol reductase [Lipid transport
           and metabolism].
          Length = 341

 Score = 35.4 bits (81), Expect = 0.015
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 19  RLALVTGSSRGIGYYTALELARSG------AYVIACGRSISQLEKLKNALQ----KINKK 68
           ++AL+TG++ G+G      L             + C R++S+ E +  AL+    K   +
Sbjct: 4   KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTC-RNMSKAEAVCAALKAFHPKSTIE 62

Query: 69  IDIFAFDLRDSNALELTKTYIAKRWGKLDILIANAGI 105
           +     D+ +  ++      I +R+ +LD +  NAGI
Sbjct: 63  VTYVLVDVSNMQSVFRASKDIKQRFQRLDYIYLNAGI 99


>gnl|CDD|36585 KOG1371, KOG1371, KOG1371, UDP-glucose
          4-epimerase/UDP-sulfoquinovose synthase [Cell
          wall/membrane/envelope biogenesis].
          Length = 343

 Score = 34.1 bits (78), Expect = 0.035
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 22 LVTGSSRGIGYYTALELARSGAYVIA----CGRSISQLEKLKNALQKINKKIDIFAFDLR 77
          LVTG +  IG +T L L + G  V+         +  L++++  L +  K +     DL 
Sbjct: 6  LVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGE-GKSVFFVEGDLN 64

Query: 78 DSNALE 83
          D+ ALE
Sbjct: 65 DAEALE 70


>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family.
           NAD(P)(H)-dependent oxidoreductases are the major
           enzymes in the interconversion of alcohols and
           aldehydes, or ketones. This group contains proteins that
           share the characteristic catalytic and structural
           zinc-binding sites of the zinc-dependent alcohol
           dehydrogenase family.  Alcohol dehydrogenase in the
           liver converts ethanol and NAD+ to acetaldehyde and
           NADH, while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation. ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which have a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide. A GxGxxG motif after the first
           mononucleotide contact half allows the close contact of
           the coenzyme with the ADH backbone. The N-terminal
           catalytic domain has a distant homology to GroES. These
           proteins typically form dimers (typically higher plants,
           mammals) or tetramers (yeast, bacteria), and have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. NAD(H)-binding occurs in the cleft
           between the catalytic and coenzyme-binding domains at
           the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine
           (His-51), the ribose of NAD, a serine (Ser-48), then the
           alcohol, which allows the transfer of a hydride to NAD+,
           creating NADH and a zinc-bound aldehyde or ketone. In
           yeast and some bacteria, the active site zinc binds an
           aldehyde, polarizing it, and leading to the reverse
           reaction.
          Length = 332

 Score = 32.7 bits (75), Expect = 0.11
 Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 2/39 (5%)

Query: 22  LVTGSSRGIGYYTALELARS-GAYVIACGRSISQLEKLK 59
           LVTG+  G+G + A++LA++ GA VIA  RS  +L+ LK
Sbjct: 167 LVTGAGGGVGIH-AIQLAKALGARVIAVTRSPEKLKILK 204


>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           The medium chain reductase/dehydrogenases
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases  (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH) , quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. ADH-like proteins
           typically form dimers (typically higher plants, mammals)
           or tetramers (yeast, bacteria), and generally have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. The active site zinc is
           coordinated by a histidine, two cysteines, and a water
           molecule. The second zinc seems to play a structural
           role, affects subunit interactions, and is typically
           coordinated by 4 cysteines. Other MDR members have only
           a catalytic zinc, and some contain no coordinated zinc.
          Length = 271

 Score = 31.9 bits (73), Expect = 0.17
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 22  LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLK 59
           LV G+  G+G   A     +GA VI   RS  +LE  K
Sbjct: 139 LVLGAG-GVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175


>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR).  QOR catalyzes the
           conversion of a quinone + NAD(P)H to a hydroquinone +
           NAD(P)+. Quinones are cyclic diones derived from
           aromatic compounds. Membrane bound QOR acts in the
           respiratory chains of bacteria and mitochondria, while
           soluble QOR acts to protect from toxic quinones (e.g.
           DT-diaphorase) or as a soluble eye-lens protein in some
           vertebrates (e.g. zeta-crystalin). QOR reduces quinones
           through a semi-quinone intermediate via a
           NAD(P)H-dependent single electron transfer. QOR is a
           member of the medium chain dehydrogenase/reductase
           family, but lacks the zinc-binding sites of the
           prototypical alcohol dehydrogenases of this group.
           NAD(P)(H)-dependent oxidoreductases are the major
           enzymes in the interconversion of alcohols and
           aldehydes, or ketones.  Alcohol dehydrogenase in the
           liver converts ethanol and NAD+ to acetaldehyde and
           NADH, while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation.  ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which has a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide.  A GxGxxG motif after the first
           mononucleotide contact half allows the close contact of
           the coenzyme with the ADH backbone.  The N-terminal
           catalytic domain has a distant homology to GroES.  These
           proteins typically form dimers (typically higher plants,
           mammals) or tetramers (yeast, bacteria), and have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site, and a structural zinc in a lobe of
           the catalytic domain.  NAD(H)-binding occurs in the
           cleft between the catalytic and coenzyme-binding domains
           at the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine,
           the ribose of NAD, a serine, then the alcohol, which
           allows the transfer of a hydride to NAD+, creating NADH
           and a zinc-bound aldehyde or ketone. In yeast and some
           bacteria, the active site zinc binds an aldehyde,
           polarizing it, and leading to the reverse reaction.
          Length = 323

 Score = 30.5 bits (70), Expect = 0.44
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 22  LVTGSSRGIGYYTALELARS-GAYVIACGRS 51
           LV G++ G+G   A++LA++ GA VIA   S
Sbjct: 144 LVLGAAGGVGL-AAVQLAKALGARVIAAASS 173


>gnl|CDD|31046 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar
          epimerases [Cell envelope biogenesis, outer membrane /
          Carbohydrate transport and metabolism].
          Length = 275

 Score = 29.5 bits (65), Expect = 0.89
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 22 LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLKNALQKINKKIDIFAFDLRDSNA 81
          LVTG++  +G     EL   G  V A  R+         A   +   +++   DLRD  +
Sbjct: 4  LVTGATGFVGGAVVRELLARGHEVRAAVRN-------PEAAAALAGGVEVVLGDLRDPKS 56

Query: 82 LEL 84
          L  
Sbjct: 57 LVA 59


>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases.  Prostaglandins and
           related eicosanoids are metabolized by the oxidation of
           the 15(S)-hydroxyl group of the NAD+-dependent (type I
           15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH)
           followed by reduction by NADPH/NADH-dependent (type II
           15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to
           15-keto-13,14,-dihydroprostaglandins. 13-PGR is a
           bifunctional enzyme, since it also has leukotriene B(4)
           12-hydroxydehydrogenase activity. These 15-PGDH and
           related enzymes are members of the medium chain
           dehydrogenase/reductase family. The medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases  (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR). The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.
          Length = 329

 Score = 29.0 bits (66), Expect = 1.2
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 34  TALELARSGAYVIACGRSISQ-----LEKLKNALQKINKKIDIFAFDLRD 78
            AL L   G  +  CG +ISQ         KN    I K++ +  F + D
Sbjct: 229 AALTLLNKGGRIALCG-AISQYNATEPPGPKNLGNIITKRLTMQGFIVSD 277


>gnl|CDD|132758 cd07073, NR_LBD_AR, Ligand binding domain of the nuclear receptor
           androgen receptor, ligand activated transcription
           regulator.  The ligand binding domain of the androgen
           receptor (AR): AR is a member of the nuclear receptor
           family. It is activated by binding either of the
           androgenic hormones, testosterone or
           dihydrotestosterone, which are responsible for male
           primary sexual characteristics and for secondary male
           characteristics, respectively. The primary mechanism of
           action of ARs is by direct regulation of gene
           transcription. The binding of an androgen results in a
           conformational change in the androgen receptor which
           causes its transport from the cytosol into the cell
           nucleus, and dimerization. The receptor dimer binds to a
           hormone response element of AR-regulated genes and
           modulates their expression. Another mode of action is
           independent of their interactions with DNA. The
           receptors interact directly with signal transduction
           proteins in the cytoplasm, causing rapid changes in cell
           function, such as ion transport. Like other members of
           the nuclear receptor (NR) superfamily of
           ligand-activated transcription factors, AR has  a
           central well conserved DNA binding domain (DBD), a
           variable N-terminal domain, a flexible hinge and a
           C-terminal ligand binding domain (LBD).  The LBD is not
           only involved in binding to androgen, but also involved
           in binding of coactivator proteins and dimerization. A
           ligand dependent nuclear export signal is also present
           at the ligand binding domain.
          Length = 246

 Score = 29.1 bits (65), Expect = 1.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 47  ACGRSISQLEKLKNALQKINKKIDIFAFDL 76
           +C R   QL KL +++Q I +++  F FDL
Sbjct: 180 SCSRRFYQLTKLLDSVQPIARELHQFTFDL 209


>gnl|CDD|144480 pfam00899, ThiF, ThiF family.  This family contains a repeated
           domain in ubiquitin activating enzyme E1 and members of
           the bacterial ThiF/MoeB/HesA family.
          Length = 134

 Score = 28.7 bits (65), Expect = 1.6
 Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 50/129 (38%)

Query: 29  GIGYYTALELARSGAYVIACGR---------SISQL----------------EKLKNALQ 63
           G+G   A  LAR+G      G+          +S L                E  K  L+
Sbjct: 11  GLGSPAAEYLARAG-----VGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLR 65

Query: 64  KINKKIDIFAFDLR--DSNALELTKTY------------------IAKRWGKLDILIANA 103
            IN  +++ A+  R    N  EL K                       + G   I     
Sbjct: 66  AINPDVEVEAYPERLTPENLEELLKGADLVVDALDNFAARYLLNDACVKRGIPLISAGAL 125

Query: 104 GILGSISPI 112
           G  G ++ I
Sbjct: 126 GFDGQVTVI 134


>gnl|CDD|36441 KOG1227, KOG1227, KOG1227, Putative methyltransferase [General
           function prediction only].
          Length = 351

 Score = 28.0 bits (62), Expect = 2.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 29  GIGYYTALELARSGA-YVIACGRSISQLEKLKNALQKIN 66
           GIGY+T   L  +GA  V AC  +   +E L+   +  N
Sbjct: 204 GIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN 242


>gnl|CDD|32610 COG2717, COG2717, Predicted membrane protein [Function unknown].
          Length = 209

 Score = 27.9 bits (62), Expect = 3.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 91  KRWGKLDILIANAGILGSISPIWQIKEKSFADVISVNVMANWNIMRSFDPWLKKS 145
           KRW KL  L+  A ILG++  +W +K      V+   + A   ++R      K  
Sbjct: 144 KRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTRSKLR 198


>gnl|CDD|34587 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
          Length = 866

 Score = 27.7 bits (61), Expect = 3.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 166 GAYSASKAAIEALARTWSKET 186
           GAY  SK A++A+   W  E+
Sbjct: 564 GAYGESKLALDAVVNRWHSES 584


>gnl|CDD|30949 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent
           oxidoreductases [Energy production and conversion /
           General function prediction only].
          Length = 326

 Score = 27.7 bits (61), Expect = 3.8
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 22  LVTGSSRGIGYYTALELARS-GAYVIACGRSISQLEKLKN--ALQKINKKIDIFAFDLRD 78
           LV G++ G+G   A++LA++ GA V+A   S  +LE LK   A   IN + + F   +R+
Sbjct: 147 LVHGAAGGVGSA-AIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRE 205


>gnl|CDD|31283 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
           [Cell envelope biogenesis, outer membrane / Carbohydrate
           transport and metabolism].
          Length = 588

 Score = 27.2 bits (60), Expect = 4.4
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 8   NNSEIHVNLDNRLALVTGSSRGIGYYTALELARSG-AYVIACGRSISQLEKLKNALQKIN 66
           +   I   L  +  LVTG    IG     ++ +     +I   R   +L  +   L++  
Sbjct: 240 DTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF 299

Query: 67  KKIDIFAF--DLRDSNALE 83
            ++ +  +  D+RD + +E
Sbjct: 300 PELKLRFYIGDVRDRDRVE 318


>gnl|CDD|32590 COG2520, COG2520, Predicted methyltransferase [General function
           prediction only].
          Length = 341

 Score = 27.2 bits (60), Expect = 4.6
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 29  GIGYYTALELARSGA-YVIACGRSISQLEKLK-NA-LQKINKKIDIFAFDLRD 78
           G+G ++ + +A+ G   V A   +   +E LK N  L K+  +++    D R+
Sbjct: 198 GVGPFS-IPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE 249


>gnl|CDD|34074 COG4359, COG4359, Uncharacterized conserved protein [Function
           unknown].
          Length = 220

 Score = 26.8 bits (59), Expect = 5.5
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 67  KKIDIFA-FD----LRDSNALELTKTYIAKRWGKL--DILIANAGILGSISPIWQIKEKS 119
           KK  IF+ FD    L DSN   +T T+    W  L   +L            ++     S
Sbjct: 2   KKPVIFSDFDGTITLNDSNDY-ITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSS 60

Query: 120 FADVISVNVMANWNIMRSFDPWLK--KSHCGRAIILSSGAAYKCRPL 164
             +++   ++ +  I   F  +++  K H    I++SSG      PL
Sbjct: 61  LEEILEF-LLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPL 106


>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain
          of methylene-tetrahydrofolate dehydrogenase and
          methylene-tetrahydrofolate
          dehydrogenase/cyclohydrolase.  NAD(P) binding domains
          of methylene-tetrahydrofolate dehydrogenase (m-THF DH)
          and  m-THF DH/cyclohydrolase bifunctional enzymes
          (m-THF DH/cyclohydrolase). M-THF is a versatile carrier
          of activated one-carbon units. The major one-carbon
          folate donors are N-5 methyltetrahydrofolate,
          N5,N10-m-THF, and N10-formayltetrahydrofolate. The
          oxidation of metabolic intermediate m-THF to m-THF
          requires the enzyme m-THF DH. In addition, most DHs
          also have an associated cyclohydrolase activity which
          catalyzes its hydrolysis to N10-formyltetrahydrofolate.
          m-THF DH is typically found as part of a
          multifunctional protein in eukaryotes. NADP-dependent
          m-THF DH in mammals, birds and yeast are components of
          a trifunctional enzyme with DH, cyclohydrolase, and
          synthetase activities. Certain eukaryotic cells also
          contain homodimeric bifunctional DH/cyclodrolase form.
          In bacteria, mono-functional DH, as well as
          bifunctional DH/cyclodrolase are found. In addition,
          yeast (S. cerevisiae) also express a monofunctional DH.
          M-THF DH, like other amino acid DH-like NAD(P)-binding
          domains, is a member of the Rossmann fold superfamily
          which includes glutamate, leucine, and phenylalanine
          DHs, m-THF DH, methylene-tetrahydromethanopterin DH,
          m-THF DH/cyclohydrolase, Shikimate DH-like proteins,
          malate oxidoreductases, and glutamyl tRNA reductase.
          Amino acid DHs catalyze the deamination of amino acids
          to keto acids with NAD(P)+ as a cofactor. The
          NAD(P)-binding Rossmann fold superfamily includes a
          wide variety of protein families including NAD(P)-
          binding domains of alcohol DHs, tyrosine-dependent
          oxidoreductases, glyceraldehyde-3-phosphate DH,
          lactate/malate DHs, formate/glycerate DHs, siroheme
          synthases, 6-phosphogluconate DH, amino acid DHs,
          repressor rex, NAD-binding potassium channel  domain,
          CoA-binding, and ornithine cyclodeaminase-like domains.
          These domains have an alpha-beta-alpha configuration.
          NAD binding involves numerous hydrogen and van der
          Waals contacts.
          Length = 140

 Score = 26.7 bits (59), Expect = 5.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 9  NSEIHVNLDNRLALVTGSSRGIGYYTALELARSGAYVIAC 48
           ++  V LD +  LV G S  +G      L R GA V +C
Sbjct: 19 LNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSC 58


>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases.
           yhfp putative quinone oxidoreductases (QOR). QOR
           catalyzes the conversion of a quinone  + NAD(P)H to a
           hydroquinone + NAD(P)+. Quinones are cyclic diones
           derived from aromatic compounds. Membrane bound QOR
           actin the respiratory chains of bacteria and
           mitochondria, while soluble QOR acts to protect from
           toxic quinones (e.g. DT-diaphorase) or as a soluble
           eye-lens protein in some vertebrates (e.g.
           zeta-crystalin). QOR reduces quinones through a
           semi-quinone intermediate via a NAD(P)H-dependent single
           electron transfer. QOR is a member of the medium chain
           dehydrogenase/reductase family, but lacks the
           zinc-binding sites of the prototypical alcohol
           dehydrogenases of this group.  NAD(P)(H)-dependent
           oxidoreductases are the major enzymes in the
           interconversion of alcohols and aldehydes, or ketones.
           Alcohol dehydrogenase in the liver converts ethanol and
           NAD+ to acetaldehyde and NADH, while in yeast and some
           other microorganisms ADH catalyzes the conversion
           acetaldehyde to ethanol in alcoholic fermentation.  ADH
           is a member of the medium chain alcohol dehydrogenase
           family (MDR), which has a NAD(P)(H)-binding domain in a
           Rossmann fold of a beta-alpha form.  The NAD(H)-binding
           region is comprised of 2 structurally similar halves,
           each of which contacts a mononucleotide.  A GxGxxG motif
           after the first mononucleotide contact half allows the
           close contact of the coenzyme with the ADH backbone.
           The N-terminal catalytic domain has a distant homology
           to GroES.  These proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and have 2 tightly bound zinc atoms per
           subunit, a catalytic zinc at the active site, and a
           structural zinc in a lobe of the catalytic domain.
           NAD(H) binding occurs in the cleft between the catalytic
           and coenzyme-binding domains at the active site, and
           coenzyme binding induces a conformational closing of
           this cleft. Coenzyme binding typically precedes and
           contributes to substrate binding. In human ADH
           catalysis, the zinc ion helps coordinate the alcohol,
           followed by deprotonation of a histidine, the ribose of
           NAD, a serine, then the alcohol, which allows the
           transfer of a hydride to NAD+, creating NADH and a
           zinc-bound aldehyde or ketone. In yeast and some
           bacteria, the active site zinc binds an aldehyde,
           polarizing it, and leading to the reverse reaction.
          Length = 326

 Score = 26.9 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 22  LVTGSSRGIGYYTALELARSGAYVIACGRSISQLEKLK 59
           LVTG++ G+G      LA+ G  V+A        + LK
Sbjct: 151 LVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLK 188


>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde
           dehydrogenase related proteins, child 1.  Members
           identified as glutathione-dependent formaldehyde
           dehydrogenase(FDH), a member of the
           zinc-dependent/medium chain alcohol dehydrogenase
           family.  FDH converts formaldehyde and NAD(P) to formate
           and NAD(P)H. The initial step in this process the
           spontaneous formation of a S-(hydroxymethyl)glutathione
           adduct from formaldehyde and glutathione, followed by
           FDH-mediated oxidation (and detoxification) of the
           adduct to S-formylglutathione.  MDH family uses NAD(H)
           as a cofactor in the interconversion of alcohols and
           aldehydes, or ketones. Like many zinc-dependent alcohol
           dehydrogenases (ADH) of the medium chain alcohol
           dehydrogenase/reductase family (MDR), these FDHs form
           dimers, with 4 zinc ions per dimer. The medium chain
           alcohol dehydrogenase family (MDR) has a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form. The N-terminal region typically has an
           all-beta catalytic domain. These proteins typically form
           dimers (typically higher plants, mammals) or tetramers
           (yeast, bacteria), and have 2 tightly bound zinc atoms
           per subunit.
          Length = 386

 Score = 26.3 bits (59), Expect = 7.5
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 190 ALRVINIDPGPTRTSMRAKAMPAE--DPNTVPHPQKVAKI 227
           A RVI ID  P R  M    + AE  +   V     V  +
Sbjct: 209 AERVIAIDRVPERLEMARSHLGAETINFEEVDDV--VEAL 246


>gnl|CDD|32077 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
          Length = 307

 Score = 26.4 bits (58), Expect = 7.5
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 29 GIGYYTALELARSGAYVIACGRSISQLEKLKN 60
           IG      LA++G  V    RS  +LE LK 
Sbjct: 10 AIGSLLGARLAKAGHDVTLLVRS-RRLEALKK 40


>gnl|CDD|30463 COG0114, FumC, Fumarase [Energy production and conversion].
          Length = 462

 Score = 26.3 bits (58), Expect = 7.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 8   NNSEIHVNLDNRLALVTGSSRGIGYYTALELAR 40
           N   I   L+  L LVT  +  IGY  A ++A+
Sbjct: 393 NEERIKELLERSLMLVTALNPHIGYDKAAKIAK 425


>gnl|CDD|153332 cd07648, F-BAR_FCHO, The F-BAR (FES-CIP4 Homology and
           Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins.
            F-BAR domains are dimerization modules that bind and
           bend membranes and are found in proteins involved in
           membrane dynamics and actin reorganization. Proteins in
           this group have been named FCH domain Only (FCHO)
           proteins. Vertebrates have two members, FCHO1 and FCHO2.
           These proteins contain an F-BAR domain and a C-terminal
           domain of unknown function named SAFF which is also
           present in endophilin interacting protein 1. F-BAR
           domains form banana-shaped dimers with a
           positively-charged concave surface that binds to
           negatively-charged lipid membranes. They can induce
           membrane deformation in the form of long tubules.
          Length = 261

 Score = 26.2 bits (58), Expect = 9.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 76  LRDSNALELTKTYIAKRWGKLDILIANAGILGSISPIWQI 115
           LR+   +E  +TY +K   KL    +N+  LG+ +P+W +
Sbjct: 28  LRERATIE--ETY-SKALNKLAKQASNSSQLGTFAPLWLV 64


>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases.  This subgroup
           contains Escherichia coli fumarase C, human
           mitochondrial fumarase, and related proteins.  It is a
           member of the Lyase class I family. Members of this
           family for the most part catalyze similar
           beta-elimination reactions in which a C-N or C-O bond is
           cleaved with the release of fumarate as one of the
           products. These proteins are active as tetramers. The
           four active sites of the homotetrameric enzyme are each
           formed by residues from three different subunits.
           Fumarase catalyzes the reversible hydration/dehydration
           of fumarate to L-malate during the Krebs cycle.
          Length = 455

 Score = 26.3 bits (59), Expect = 9.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 8   NNSEIHVNLDNRLALVTGSSRGIGYYTALELAR 40
           N   I   L+  L LVT  +  IGY  A ++A+
Sbjct: 390 NRERIAELLERSLMLVTALNPHIGYDKAAKIAK 422


>gnl|CDD|31285 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope
           biogenesis, outer membrane].
          Length = 340

 Score = 25.9 bits (57), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 168 YSASKAAIEALARTW 182
           YSASKAA + L R +
Sbjct: 152 YSASKAASDLLVRAY 166


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,999,469
Number of extensions: 149685
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 61
Length of query: 257
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,275,709
Effective search space: 705491985
Effective search space used: 705491985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)