Query gi|254780338|ref|YP_003064751.1| hypothetical protein CLIBASIA_01115 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 100 out of 102 Neff 5.1 Searched_HMMs 13730 Date Wed Jun 1 02:36:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780338.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2hi7b1 a.29.15.1 (B:14-162) D 95.4 0.017 1.2E-06 33.2 5.7 62 14-75 56-147 (149) 2 d1qh4a1 a.83.1.1 (A:2-102) Cre 19.1 24 0.0018 13.5 2.1 27 102-128 51-84 (101) 3 d2db7a1 a.273.1.1 (A:3-57) Hai 15.5 18 0.0013 14.4 0.3 31 99-129 16-46 (55) 4 d1deca_ g.3.15.2 (A:) Decorsin 14.7 22 0.0016 13.8 0.6 14 112-125 21-37 (39) 5 d1m56d_ f.23.8.1 (D:) Bacteria 13.0 35 0.0025 12.5 3.2 19 56-74 21-39 (42) 6 d1qk1a1 a.83.1.1 (A:1-102) Cre 11.8 38 0.0028 12.3 2.1 27 102-128 47-80 (102) 7 d1m15a1 a.83.1.1 (A:2-95) Argi 11.1 40 0.0029 12.1 2.3 26 103-128 49-77 (94) 8 d1qled_ f.23.8.1 (D:) Bacteria 10.8 41 0.003 12.1 3.2 18 57-74 23-40 (43) 9 d1imta1 g.3.10.1 (A:1-36) Inte 10.3 24 0.0017 13.5 -0.3 8 111-118 11-18 (36) 10 d1pvza_ g.3.7.2 (A:) K+ toxin- 10.2 36 0.0027 12.4 0.6 5 118-122 17-21 (31) No 1 >d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]} Probab=95.35 E-value=0.017 Score=33.23 Aligned_cols=62 Identities=10% Similarity=0.301 Sum_probs=46.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCC---------------------H--------HHHHHHHHHHHHH Q ss_conf 867889999999999999999999986047899-854---------------------5--------6752257999999 Q gi|254780338|r 14 IKQRHYSIMILGAITTCIIATRQVLIHILPGDL-GYS---------------------I--------PVFGMHLYTWSLI 63 (129) Q Consensus 14 ~r~~hyg~~il~A~~G~~~s~RQi~lHi~pg~~-GyG---------------------~--------~i~GlH~YTWA~i 63 (129) .|.......++.++.|...|.||+.++..|.+. +-+ + .+||+++-+|.++ T Consensus 56 ~~~~~~~~~~l~~~~G~~~a~~h~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~C~e~~w~~lGlSma~wn~i 135 (149) T d2hi7b1 56 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDSAERQWDFLGLEMPQWLLG 135 (149) T ss_dssp CTHHHHHHTTHHHHHHHHHHHHHHHHTTSCCSSCCCCCCCCCTTSCGGGGSSTTGGGC---------------CHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHH T ss_conf 99999999999999999999999998851356765564111002287999999973789876543625436179999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254780338|r 64 FSLVIILFISVL 75 (129) Q Consensus 64 ~f~~~i~~~av~ 75 (129) .|....+..... T Consensus 136 ~~~~~~~~~~~~ 147 (149) T d2hi7b1 136 IFIAYLIVAVLV 147 (149) T ss_dssp HHHHHHHHHHHT T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 2 >d1qh4a1 a.83.1.1 (A:2-102) Creatine kinase, N-domain {Chicken (Gallus gallus), brain-type [TaxId: 9031]} Probab=19.05 E-value=24 Score=13.47 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHC-------CCCCCCCCCCCCCCC Q ss_conf 999999999941-------876889998532246 Q gi|254780338|r 102 IFANFISTILEC-------GLTQCFDNPTFYQLL 128 (129) Q Consensus 102 i~~N~vstflec-------G~~~cpddP~~Y~ll 128 (129) .+..++|+=++. +.|..++|+.+|..| T Consensus 51 TL~~~IqsGv~npg~~~d~~vG~~AgD~esY~vF 84 (101) T d1qh4a1 51 TLDDVIQTGVDNPGHPFIMTVGCVAGDEESYEVF 84 (101) T ss_dssp CHHHHHHHHHHCCCCSSSCBCCCCCSSTTHHHHT T ss_pred CHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHH T ss_conf 5999999874188986557774252783799999 No 3 >d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=15.48 E-value=18 Score=14.37 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 9999999999999418768899985322469 Q gi|254780338|r 99 VFLIFANFISTILECGLTQCFDNPTFYQLLN 129 (129) Q Consensus 99 ~~vi~~N~vstflecG~~~cpddP~~Y~ll~ 129 (129) .+-=++|=|+-|+++-.|+=++||++=.|++ T Consensus 16 GF~ECa~EV~RyL~~~eg~d~~d~~r~RLl~ 46 (55) T d2db7a1 16 GFRECLAEVARYLSIIEGLDASDPLRVRLVS 46 (55) T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 5999999999996235889954699999999 No 4 >d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]} Probab=14.72 E-value=22 Score=13.77 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=8.5 Q ss_pred HCCCCCC--C-CCCCCC Q ss_conf 4187688--9-998532 Q gi|254780338|r 112 ECGLTQC--F-DNPTFY 125 (129) Q Consensus 112 ecG~~~c--p-ddP~~Y 125 (129) ||-||+| | +|-..| T Consensus 21 ecppgqcrfprgdadpy 37 (39) T d1deca_ 21 ECPPGQCRFPRGDADPY 37 (39) T ss_dssp EECTTCEECCSSSCCCE T ss_pred CCCCCCCCCCCCCCCCC T ss_conf 78875354667887866 No 5 >d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]} Probab=12.97 E-value=35 Score=12.50 Aligned_cols=19 Identities=16% Similarity=0.697 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 5799999999999999999 Q gi|254780338|r 56 HLYTWSLIFSLVIILFISV 74 (129) Q Consensus 56 H~YTWA~i~f~~~i~~~av 74 (129) .+-||..|+.++++++.|+ T Consensus 21 k~~t~~~i~~i~~liflAi 39 (42) T d1m56d_ 21 RMVTWAAVVIVAALIFLAL 39 (42) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999 No 6 >d1qk1a1 a.83.1.1 (A:1-102) Creatine kinase, N-domain {Human (Homo sapiens), mitochondria [TaxId: 9606]} Probab=11.79 E-value=38 Score=12.28 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHC-------CCCCCCCCCCCCCCC Q ss_conf 999999999941-------876889998532246 Q gi|254780338|r 102 IFANFISTILEC-------GLTQCFDNPTFYQLL 128 (129) Q Consensus 102 i~~N~vstflec-------G~~~cpddP~~Y~ll 128 (129) .+..++|+=++. +.|..+.||.+|..| T Consensus 47 Tl~~~IqsGv~np~~p~~s~vGiyAgD~esY~vF 80 (102) T d1qk1a1 47 TLDQCIQTGVDNPGHPFIKTVGMVAGDEETYEVF 80 (102) T ss_dssp CHHHHHHHHHHCCCCSSSCBCCCCCSSTTHHHHT T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 7999998722288987556686135877999999 No 7 >d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]} Probab=11.11 E-value=40 Score=12.13 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=17.9 Q ss_pred HHHHHHHHHHC---CCCCCCCCCCCCCCC Q ss_conf 99999999941---876889998532246 Q gi|254780338|r 103 FANFISTILEC---GLTQCFDNPTFYQLL 128 (129) Q Consensus 103 ~~N~vstflec---G~~~cpddP~~Y~ll 128 (129) +..++++=++. +.|..+.||.+|..| T Consensus 49 l~~~I~sGv~n~ds~vGiyAgD~esY~vF 77 (94) T d1m15a1 49 LLDVIQSGVENLDSGVGIYAPDAESYRTF 77 (94) T ss_dssp HHHHHHHHHHCTTCSSCCCCSSSTHHHHT T ss_pred HHHHHHHCCCCCCCCCCEEECCHHHHHHH T ss_conf 99999864238999886142878999999 No 8 >d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]} Probab=10.84 E-value=41 Score=12.08 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 799999999999999999 Q gi|254780338|r 57 LYTWSLIFSLVIILFISV 74 (129) Q Consensus 57 ~YTWA~i~f~~~i~~~av 74 (129) +-||..|+.++++++.|+ T Consensus 23 ~~t~~~i~~i~~liflAi 40 (43) T d1qled_ 23 GATWVSILSIAVLVFLAL 40 (43) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999 No 9 >d1imta1 g.3.10.1 (A:1-36) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]} Probab=10.34 E-value=24 Score=13.52 Aligned_cols=8 Identities=50% Similarity=1.335 Sum_probs=0.0 Q ss_pred HHCCCCCC Q ss_conf 94187688 Q gi|254780338|r 111 LECGLTQC 118 (129) Q Consensus 111 lecG~~~c 118 (129) .|||.|+| T Consensus 11 ~QCg~g~C 18 (36) T d1imta1 11 LQCGKGTC 18 (36) T ss_dssp GGTCTTEE T ss_pred CCCCCCCE T ss_conf 65688637 No 10 >d1pvza_ g.3.7.2 (A:) K+ toxin-like peptide Bmp07 (BmKK2) {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]} Probab=10.20 E-value=36 Score=12.38 Aligned_cols=5 Identities=60% Similarity=1.278 Sum_probs=0.0 Q ss_pred CCCCC Q ss_conf 89998 Q gi|254780338|r 118 CFDNP 122 (129) Q Consensus 118 cpddP 122 (129) ||+|| T Consensus 17 cpgnp 21 (31) T d1pvza_ 17 CPGNP 21 (31) T ss_dssp SSSCC T ss_pred CCCCC T ss_conf 97998 Done!