Query         gi|254780338|ref|YP_003064751.1| hypothetical protein CLIBASIA_01115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    100 out of 102
Neff          5.1 
Searched_HMMs 13730
Date          Wed Jun  1 02:36:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780338.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2hi7b1 a.29.15.1 (B:14-162) D  95.4   0.017 1.2E-06   33.2   5.7   62   14-75     56-147 (149)
  2 d1qh4a1 a.83.1.1 (A:2-102) Cre  19.1      24  0.0018   13.5   2.1   27  102-128    51-84  (101)
  3 d2db7a1 a.273.1.1 (A:3-57) Hai  15.5      18  0.0013   14.4   0.3   31   99-129    16-46  (55)
  4 d1deca_ g.3.15.2 (A:) Decorsin  14.7      22  0.0016   13.8   0.6   14  112-125    21-37  (39)
  5 d1m56d_ f.23.8.1 (D:) Bacteria  13.0      35  0.0025   12.5   3.2   19   56-74     21-39  (42)
  6 d1qk1a1 a.83.1.1 (A:1-102) Cre  11.8      38  0.0028   12.3   2.1   27  102-128    47-80  (102)
  7 d1m15a1 a.83.1.1 (A:2-95) Argi  11.1      40  0.0029   12.1   2.3   26  103-128    49-77  (94)
  8 d1qled_ f.23.8.1 (D:) Bacteria  10.8      41   0.003   12.1   3.2   18   57-74     23-40  (43)
  9 d1imta1 g.3.10.1 (A:1-36) Inte  10.3      24  0.0017   13.5  -0.3    8  111-118    11-18  (36)
 10 d1pvza_ g.3.7.2 (A:) K+ toxin-  10.2      36  0.0027   12.4   0.6    5  118-122    17-21  (31)

No 1  
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=95.35  E-value=0.017  Score=33.23  Aligned_cols=62  Identities=10%  Similarity=0.301  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCC---------------------H--------HHHHHHHHHHHHH
Q ss_conf             867889999999999999999999986047899-854---------------------5--------6752257999999
Q gi|254780338|r   14 IKQRHYSIMILGAITTCIIATRQVLIHILPGDL-GYS---------------------I--------PVFGMHLYTWSLI   63 (129)
Q Consensus        14 ~r~~hyg~~il~A~~G~~~s~RQi~lHi~pg~~-GyG---------------------~--------~i~GlH~YTWA~i   63 (129)
                      .|.......++.++.|...|.||+.++..|.+. +-+                     +        .+||+++-+|.++
T Consensus        56 ~~~~~~~~~~l~~~~G~~~a~~h~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~C~e~~w~~lGlSma~wn~i  135 (149)
T d2hi7b1          56 LRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDFMVRFPEWLPLDKWVPQVFVASGDSAERQWDFLGLEMPQWLLG  135 (149)
T ss_dssp             CTHHHHHHTTHHHHHHHHHHHHHHHHTTSCCSSCCCCCCCCCTTSCGGGGSSTTGGGC---------------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHH
T ss_conf             99999999999999999999999998851356765564111002287999999973789876543625436179999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780338|r   64 FSLVIILFISVL   75 (129)
Q Consensus        64 ~f~~~i~~~av~   75 (129)
                      .|....+.....
T Consensus       136 ~~~~~~~~~~~~  147 (149)
T d2hi7b1         136 IFIAYLIVAVLV  147 (149)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 2  
>d1qh4a1 a.83.1.1 (A:2-102) Creatine kinase, N-domain {Chicken (Gallus gallus), brain-type [TaxId: 9031]}
Probab=19.05  E-value=24  Score=13.47  Aligned_cols=27  Identities=11%  Similarity=0.192  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHC-------CCCCCCCCCCCCCCC
Q ss_conf             999999999941-------876889998532246
Q gi|254780338|r  102 IFANFISTILEC-------GLTQCFDNPTFYQLL  128 (129)
Q Consensus       102 i~~N~vstflec-------G~~~cpddP~~Y~ll  128 (129)
                      .+..++|+=++.       +.|..++|+.+|..|
T Consensus        51 TL~~~IqsGv~npg~~~d~~vG~~AgD~esY~vF   84 (101)
T d1qh4a1          51 TLDDVIQTGVDNPGHPFIMTVGCVAGDEESYEVF   84 (101)
T ss_dssp             CHHHHHHHHHHCCCCSSSCBCCCCCSSTTHHHHT
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHH
T ss_conf             5999999874188986557774252783799999


No 3  
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.48  E-value=18  Score=14.37  Aligned_cols=31  Identities=13%  Similarity=-0.036  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999418768899985322469
Q gi|254780338|r   99 VFLIFANFISTILECGLTQCFDNPTFYQLLN  129 (129)
Q Consensus        99 ~~vi~~N~vstflecG~~~cpddP~~Y~ll~  129 (129)
                      .+-=++|=|+-|+++-.|+=++||++=.|++
T Consensus        16 GF~ECa~EV~RyL~~~eg~d~~d~~r~RLl~   46 (55)
T d2db7a1          16 GFRECLAEVARYLSIIEGLDASDPLRVRLVS   46 (55)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             5999999999996235889954699999999


No 4  
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=14.72  E-value=22  Score=13.77  Aligned_cols=14  Identities=36%  Similarity=0.646  Sum_probs=8.5

Q ss_pred             HCCCCCC--C-CCCCCC
Q ss_conf             4187688--9-998532
Q gi|254780338|r  112 ECGLTQC--F-DNPTFY  125 (129)
Q Consensus       112 ecG~~~c--p-ddP~~Y  125 (129)
                      ||-||+|  | +|-..|
T Consensus        21 ecppgqcrfprgdadpy   37 (39)
T d1deca_          21 ECPPGQCRFPRGDADPY   37 (39)
T ss_dssp             EECTTCEECCSSSCCCE
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             78875354667887866


No 5  
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.97  E-value=35  Score=12.50  Aligned_cols=19  Identities=16%  Similarity=0.697  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             5799999999999999999
Q gi|254780338|r   56 HLYTWSLIFSLVIILFISV   74 (129)
Q Consensus        56 H~YTWA~i~f~~~i~~~av   74 (129)
                      .+-||..|+.++++++.|+
T Consensus        21 k~~t~~~i~~i~~liflAi   39 (42)
T d1m56d_          21 RMVTWAAVVIVAALIFLAL   39 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999


No 6  
>d1qk1a1 a.83.1.1 (A:1-102) Creatine kinase, N-domain {Human (Homo sapiens), mitochondria [TaxId: 9606]}
Probab=11.79  E-value=38  Score=12.28  Aligned_cols=27  Identities=11%  Similarity=0.187  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHC-------CCCCCCCCCCCCCCC
Q ss_conf             999999999941-------876889998532246
Q gi|254780338|r  102 IFANFISTILEC-------GLTQCFDNPTFYQLL  128 (129)
Q Consensus       102 i~~N~vstflec-------G~~~cpddP~~Y~ll  128 (129)
                      .+..++|+=++.       +.|..+.||.+|..|
T Consensus        47 Tl~~~IqsGv~np~~p~~s~vGiyAgD~esY~vF   80 (102)
T d1qk1a1          47 TLDQCIQTGVDNPGHPFIKTVGMVAGDEETYEVF   80 (102)
T ss_dssp             CHHHHHHHHHHCCCCSSSCBCCCCCSSTTHHHHT
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             7999998722288987556686135877999999


No 7  
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=11.11  E-value=40  Score=12.13  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHC---CCCCCCCCCCCCCCC
Q ss_conf             99999999941---876889998532246
Q gi|254780338|r  103 FANFISTILEC---GLTQCFDNPTFYQLL  128 (129)
Q Consensus       103 ~~N~vstflec---G~~~cpddP~~Y~ll  128 (129)
                      +..++++=++.   +.|..+.||.+|..|
T Consensus        49 l~~~I~sGv~n~ds~vGiyAgD~esY~vF   77 (94)
T d1m15a1          49 LLDVIQSGVENLDSGVGIYAPDAESYRTF   77 (94)
T ss_dssp             HHHHHHHHHHCTTCSSCCCCSSSTHHHHT
T ss_pred             HHHHHHHCCCCCCCCCCEEECCHHHHHHH
T ss_conf             99999864238999886142878999999


No 8  
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=10.84  E-value=41  Score=12.08  Aligned_cols=18  Identities=28%  Similarity=0.713  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             799999999999999999
Q gi|254780338|r   57 LYTWSLIFSLVIILFISV   74 (129)
Q Consensus        57 ~YTWA~i~f~~~i~~~av   74 (129)
                      +-||..|+.++++++.|+
T Consensus        23 ~~t~~~i~~i~~liflAi   40 (43)
T d1qled_          23 GATWVSILSIAVLVFLAL   40 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999


No 9  
>d1imta1 g.3.10.1 (A:1-36) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
Probab=10.34  E-value=24  Score=13.52  Aligned_cols=8  Identities=50%  Similarity=1.335  Sum_probs=0.0

Q ss_pred             HHCCCCCC
Q ss_conf             94187688
Q gi|254780338|r  111 LECGLTQC  118 (129)
Q Consensus       111 lecG~~~c  118 (129)
                      .|||.|+|
T Consensus        11 ~QCg~g~C   18 (36)
T d1imta1          11 LQCGKGTC   18 (36)
T ss_dssp             GGTCTTEE
T ss_pred             CCCCCCCE
T ss_conf             65688637


No 10 
>d1pvza_ g.3.7.2 (A:) K+ toxin-like peptide Bmp07 (BmKK2) {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=10.20  E-value=36  Score=12.38  Aligned_cols=5  Identities=60%  Similarity=1.278  Sum_probs=0.0

Q ss_pred             CCCCC
Q ss_conf             89998
Q gi|254780338|r  118 CFDNP  122 (129)
Q Consensus       118 cpddP  122 (129)
                      ||+||
T Consensus        17 cpgnp   21 (31)
T d1pvza_          17 CPGNP   21 (31)
T ss_dssp             SSSCC
T ss_pred             CCCCC
T ss_conf             97998


Done!