RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780338|ref|YP_003064751.1| hypothetical protein
CLIBASIA_01115 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>gnl|CDD|36224 KOG1006, KOG1006, KOG1006, Mitogen-activated protein kinase (MAPK)
           kinase MKK4 [Signal transduction mechanisms].
          Length = 361

 Score = 26.1 bits (57), Expect = 2.9
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 2   IGIGFLFNLISGIKQRHYSIMILGAITTCII 32
           I +  L+  +  +++      ILG IT   +
Sbjct: 147 ISLDKLYKRVYSVQKSRIPENILGHITVATV 177


>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
           glycosylation.  UDP-glucose:dolichyl-phosphate
           glucosyltransferase (DPG_synthase) is a
           transmembrane-bound enzyme of the endoplasmic reticulum
           involved in protein N-linked glycosylation. This enzyme
           catalyzes the transfer of glucose from UDP-glucose to
           dolichyl phosphate.
          Length = 211

 Score = 26.0 bits (58), Expect = 3.4
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 81  AEIKVAKSPVREIAIYLFVFLIFANFISTILECGLTQC 118
           +   V +S +R +    F FL+       I +   TQC
Sbjct: 124 SAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKD---TQC 158


>gnl|CDD|36999 KOG1788, KOG1788, KOG1788, Uncharacterized conserved protein
            [Function unknown].
          Length = 2799

 Score = 25.0 bits (54), Expect = 5.7
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 24/101 (23%)

Query: 4    IGFLFNLISGIKQRHYSIMILGAITTCIIATRQVLIHILPGDLGYSIPVFGMHLYTWSLI 63
            +GFL NLIS +  R +++ IL  I       + +L+ +  GD+   + V         L+
Sbjct: 1526 LGFLENLISILWYRSHNLAILRQINL----VKHLLVTLQRGDV--EVLVLE------KLV 1573

Query: 64   FSLVIIL---FIS---------VLMLFDTAEIKVAKSPVRE 92
              L  IL   F++          +M F+  EIK   S +RE
Sbjct: 1574 ILLRCILENGFLTPELEDVVRFAIMTFNPPEIKSQNSSMRE 1614


>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding
           component of ABC (ATPase Binding Cassette)-type
           transport systems that are predicted to be involved in
           uptake of amino acids.  This subgroup includes the type
           I periplasmic binding component of ABC (ATPase Binding
           Cassette)-type transport systems that are predicted to
           be involved in uptake of amino acids. Members of this
           subgroup are sequence-similar to members of the family
           of ABC-type hydrophobic amino acid transporters (HAAT),
           such as leucine-isoleucine-valine-binding protein
           (LIVBP); their ligand specificity has not been
           determined experimentally, however.
          Length = 312

 Score = 24.4 bits (54), Expect = 8.9
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 26  AITTCIIATRQVLIHILPGDLGYSIPVFGMH 56
           A+      T   L      + GY  P++  H
Sbjct: 191 AVLIWGSGTPAALPAKNLRERGYKGPIYQTH 221


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.336    0.150    0.459 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,653,011
Number of extensions: 87819
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 146
Length of query: 129
Length of database: 6,263,737
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,470,190
Effective search space: 205628740
Effective search space used: 205628740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (23.8 bits)