RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780338|ref|YP_003064751.1| hypothetical protein
CLIBASIA_01115 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB
          (11015), different isoforms [TaxId: 85698]}
          Length = 129

 Score = 23.9 bits (51), Expect = 4.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 76 MLFDTAEIKVAKS 88
          M ++  EI V KS
Sbjct: 13 MQYNVKEIVVDKS 25


>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit
           alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 166

 Score = 23.2 bits (50), Expect = 6.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 12  SGIKQRHYS---IMILGAITTCIIATRQVLIHILPGDLGYS 49
           SG+   H S   I++LG  T  +      L H L  DLG S
Sbjct: 126 SGLTNMHGSTGDIVLLGTQTPQLEEIFFELTHNLNTDLGGS 166


>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 128

 Score = 23.1 bits (49), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 76 MLFDTAEIKVAKS 88
          M F+T  I V KS
Sbjct: 13 MQFNTNAITVDKS 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.336    0.150    0.459 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,497
Number of extensions: 20029
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 13
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 48 (22.5 bits)