RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780339|ref|YP_003064752.1| hypothetical protein
CLIBASIA_01120 [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.1 bits (74), Expect = 0.016
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 16/42 (38%)

Query: 11 KEAITNNRVEIANIR--ADMSGTSMKIQSEINNMSWKILTTM 50
          K+A+   +++ A+++  AD S  ++ I++           TM
Sbjct: 19 KQAL--KKLQ-ASLKLYADDSAPALAIKA-----------TM 46


>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants,
           DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA
           recombination; HET: DTP; 2.50A {Mycobacterium smegmatis
           str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A*
           1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A
           2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
          Length = 349

 Score = 24.8 bits (54), Expect = 4.7
 Identities = 8/43 (18%), Positives = 21/43 (48%)

Query: 22  ANIRADMSGTSMKIQSEINNMSWKILTTMIGCSSAMLGTINQV 64
           A I  +M  + + +Q+ + + + + +T  +  S      IN++
Sbjct: 155 AEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINEL 197


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 631,973
Number of extensions: 21615
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 4
Length of query: 88
Length of database: 5,693,230
Length adjustment: 55
Effective length of query: 33
Effective length of database: 4,359,810
Effective search space: 143873730
Effective search space used: 143873730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)