>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230

Score = 153 bits (388), Expect = 6e-38 Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 15/211 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 NL +++GE + L+G SG GKSTLL I+GLA G V+++ + + D Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ--ITEPGPD------- 55 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFL--DIPDVERKSRVAEHLEIVNLTKWADCK 166 RM +VFQ ++LLPW TV N+ L ++ + D+ ER++ V EH+ +V LT+ AD + Sbjct: 56 RM----VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111 Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226 LSGGMKQRV ARA + +LL+DEPF +LD L R LQ+EL+ + + + T++ V Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171 Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 +HD++EA L +R+ ++ G G E+ Sbjct: 172 THDVDEALLLSDRVVMLTNGPAANIGQILEV 202

RPSBLAST alignment for GI: 254780340 and conserved domain: TIGR01184