RPSBLAST alignment for GI: 254780340 and conserved domain: TIGR01194

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555
 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 19/205 (9%)

Query: 49  NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
           +L + +G+I+ ++G +G GKSTL +   GL     GE+L+D         +AD+   R  
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGA-----AVSADS---RDD 413

Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
                S +F  F L        +  +G +  +   ++   +  + LEI +  K  D   +
Sbjct: 414 YRDLFSAIFADFHLF-------DDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFS 466

Query: 169 M---LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
               LS G ++R+    A+    PILL DE  +  DP  +    +ELL   ++  KTI+ 
Sbjct: 467 TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526

Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQ 250
           +SHD ++ F L ++I  +  G I++
Sbjct: 527 ISHD-DQYFELADQIIKLAAGCIVK 550