RPSBLAST alignment for GI: 254780340 and conserved domain: TIGR02203
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571
Score = 86.7 bits (215), Expect = 8e-18
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 28/223 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L ++ GE + L+G SG+GKSTL+ I G++L+D AD L L
Sbjct: 352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD------LADYT-LASL 404
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELG-LEFLDIPDVERKSRVAEHLEIVN-LTKWADCK 166
R V++V Q L T+A N+ G E D ++ER A + V+ L D
Sbjct: 405 RRQ-VALVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 167 IN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
I +LSGG +QR+ ARA APIL++DE S+LD +Q L L + +T
Sbjct: 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRT 520
Query: 223 IVFVSHDINEAFRL-----GNRIAIMEGGRIIQCGTPQEIILH 260
+ ++H RL +RI +M+ GRI++ GT E++
Sbjct: 521 TLVIAH------RLSTIEKADRIVVMDDGRIVERGTHNELLAR 557