RPSBLAST alignment for GI: 254780340 and conserved domain: TIGR03269
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520
Score = 81.4 bits (201), Expect = 3e-16
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 34/260 (13%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTL---LRSINGLAPV----- 81
I+ + ++ + + +++GE+L ++G SGAGKS L LR ++ P
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 82 -----------------------VRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ 118
V G L + F N + R++R M+ +
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNL---SDKLRRRIRKRIAIMLQR 117
Query: 119 QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRV 178
FAL TV NV LE + E R + +E+V L+ LSGG KQRV
Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRV 177
Query: 179 GFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGN 238
AR A + L DEP +LDP + + L + ++V SH L +
Sbjct: 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237
Query: 239 RIAIMEGGRIIQCGTPQEII 258
+ +E G I + GTP E++
Sbjct: 238 KAIWLENGEIKEEGTPDEVV 257