>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382

Score = 437 bits (1125), Expect = e-123 Identities = 176/386 (45%), Positives = 230/386 (59%), Gaps = 57/386 (14%) Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDK-------VSEYGMVSAVIKANLEVKKGEIL 58 + F++VD+VFG + ++ D+ + E G+V V A+L++++GEI Sbjct: 1 IDFKNVDVVFG-------DQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEIC 53 Query: 59 VLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ 118 VLMGLSG+GKS+LLR++NGL PV RG VLV G ++ DA LR+LR H VSMVFQ Sbjct: 54 VLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 Query: 119 QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRV 178 +FAL+PW TV NV GLE +P+ ER+ RV E LE+V L +WAD K LSGGM+QRV Sbjct: 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRV 173 Query: 179 GFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGN 238 G ARAFA A ILLMDEPFS+LDPLIR +LQDELL LQ KL KTI+FVSHD++EA ++GN Sbjct: 174 GLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGN 233 Query: 239 RIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALVAADVMR------------ 286 RIAIMEGGRIIQ GTP+EI+L+PAN YV++F+ NP+ L A +MR Sbjct: 234 RIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGGW 293 Query: 287 -----------------------------VCSIDDES--NIVHKISRQMPLIDIIDMVAD 315 + ES I+ + D++ Sbjct: 294 CVSDRRDTWLFTIDKQVRRRDAKLPVQAWAAEQEVESLEAAPTVINPDTLMRDVLAARHR 353 Query: 316 NLGKIGVVEDDRIVGIITAIDIVRGL 341 G I +VE+ RIVG+I +I L Sbjct: 354 TGGAILLVENGRIVGVIGDDNIYHAL 379

RPSBLAST alignment for GI: 254780340 and conserved domain: TIGR03415