RPSBLAST alignment for GI: 254780340 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544

 Score = 85.9 bits (213), Expect = 2e-17
 Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 18/219 (8%)

Query: 48  ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK 107
            +  ++ GE L ++G SG+GKSTL R I G+ P   G V +D         A      R+
Sbjct: 337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG--------ADLKQWDRE 388

Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCK 166
                +  + Q   L P  TVA N+    E  D   +   +++A  H  I+ L    D  
Sbjct: 389 TFGKHIGYLPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTV 447

Query: 167 IN----MLSGGMKQRVGFARAFATGAP-ILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
           I      LSGG +QR+  ARA   G P ++++DEP S+LD      L + + AL+ +   
Sbjct: 448 IGPGGATLSGGQRQRIALARAL-YGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR-GI 505

Query: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
           T+V ++H  +      ++I +++ GRI + G   E++  
Sbjct: 506 TVVVITHRPS-LLGCVDKILVLQDGRIARFGERDEVLAK 543