RPSBLAST alignment for GI: 254780340 and conserved domain: cd03236
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255
Score = 51.8 bits (124), Expect = 2e-07
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 14/218 (6%)
Query: 34 DKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDK 92
+ V YG S + ++G++L L+G +G GKST L+ + G L P +
Sbjct: 5 EPVHRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWD 64
Query: 93 GFVNPYAADA--NVLRKLRMHTVSMVF--QQFALLPWRTVARNVELGLEFLDIPDVERKS 148
++ + N KL V ++ Q L+P + V V L+ D + +
Sbjct: 65 EILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIP-KAVKGKVGELLKKKD--ERGKLD 121
Query: 149 RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
+ + LE+ ++ D I+ LSGG QRV A A A A DEP S LD I+ RL
Sbjct: 122 ELVDQLELRHVL---DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD--IKQRL 176
Query: 209 QDELLALQR-KLKKTIVFVSHDINEAFRLGNRIAIMEG 245
L + + ++ V HD+ L + I + G
Sbjct: 177 NAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214