RPSBLAST alignment for GI: 254780340 and conserved domain: cd03270

>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226
 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 56/236 (23%)

Query: 49  NLEVKKGEILVLMGLSGAGKSTL----------LRSINGLAPVVR------GEVLVDTDK 92
           ++++ + +++V+ G+SG+GKS+L           R +  L+   R       +  VD+ +
Sbjct: 15  DVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE 74

Query: 93  GFVNPYAADANVLRK---LRMHTVSMVFQQFALLPWRTVARN-----VELGLEFLDIPDV 144
           G     A D     +     + TV+ ++    LL  R   R      V++GL +L +   
Sbjct: 75  GLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTL--- 131

Query: 145 ERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATG--APILLMDEPFSSLDP 202
              SR A                  LSGG  QR+  A    +G    + ++DEP   L P
Sbjct: 132 ---SRSA----------------PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHP 172

Query: 203 LIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRI------AIMEGGRIIQCG 252
               RL + L  L R L  T++ V HD  +  R  + +      A + GG I+  G
Sbjct: 173 RDNDRLIETLKRL-RDLGNTVLVVEHD-EDTIRAADHVIDIGPGAGVHGGEIVAQG 226