RPSBLAST alignment for GI: 254780340 and conserved domain: cd03279

>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 32/207 (15%)

Query: 51  EVKKGEILVLMGLSGAGKSTLLRSIN-GLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
            +    + ++ G +GAGKST+L +I   L          +  +    P    A V     
Sbjct: 24  GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEV----- 78

Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINM 169
               S  FQ    L  +        GL++    D   +  +    E           ++ 
Sbjct: 79  ----SFTFQ----LGGKKYRVERSRGLDY----DQFTRIVLLPQGEFDRFLARP---VST 123

Query: 170 LSGGMKQRVGFARAFA--------TGAPI--LLMDEPFSSLDPLIRMRLQDELLALQRKL 219
           LSGG       + A A         GA +  L +DE F +LDP     +    L L R  
Sbjct: 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTE 182

Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGG 246
            + +  +SH      R+  R+ +++  
Sbjct: 183 NRMVGVISHVEELKERIPQRLEVIKTP 209