RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC
transporter, ATP-binding protein [Candidatus Liberibacter asiaticus
str. psy62]
(348 letters)
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 351 bits (901), Expect = 2e-97
Identities = 149/336 (44%), Positives = 207/336 (61%), Gaps = 8/336 (2%)
Query: 5 AVKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLS 64
++ ++V +FG+ + K K + + + G+V V A+L+V++GEI V+MGLS
Sbjct: 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLS 63
Query: 65 GAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLP 124
G+GKSTL+R +N L RGE+LVD + A LR+LR +SMVFQ FALLP
Sbjct: 64 GSGKSTLVRLLNRLIEPTRGEILVDGK----DIAKLSAAELRELRRKKISMVFQSFALLP 119
Query: 125 WRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAF 184
RTV NV GLE +P ER+ R E LE+V L +AD N LSGGM+QRVG ARA
Sbjct: 120 HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL 179
Query: 185 ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIME 244
A ILLMDE FS+LDPLIR +QDELL LQ KLKKTIVF++HD++EA R+G+RIAIM+
Sbjct: 180 ANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMK 239
Query: 245 GGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALVAADVMRVCSIDDESNIVHKISRQM 304
G I+Q GTP+EI+L+PAN YV +F++ ++ L A D+MR D ++
Sbjct: 240 DGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMR--RPDLLIRKTPGDGPRV 297
Query: 305 PLIDIIDMVADNLGKIGVVEDDRIVGIITAIDIVRG 340
L + D + V ++ VG+++ +V+
Sbjct: 298 ALKLLRDEGREYG--YAVDRGNKFVGVVSIDSLVKA 331
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 304 bits (779), Expect = 3e-83
Identities = 134/270 (49%), Positives = 176/270 (65%), Gaps = 4/270 (1%)
Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSG 65
+K + + +FG+ K K K + + + G V +L+V++GEI V+MGLSG
Sbjct: 1 IKIKGLYKIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSG 60
Query: 66 AGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPW 125
+GKSTLLR IN L G+VL+D + A LR+LR +SMVFQ FALLP
Sbjct: 61 SGKSTLLRCINRLIEPTSGKVLIDGQ----DIAAMSRKELRELRRKKISMVFQSFALLPH 116
Query: 126 RTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFA 185
RTV NV GLE +P ER+ R AE LE+V L W + LSGGM+QRVG ARA A
Sbjct: 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176
Query: 186 TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG 245
ILLMDE FS+LDPLIR +QDELL LQ +L+KTIVF++HD++EA RLG+RIAIM+
Sbjct: 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD 236
Query: 246 GRIIQCGTPQEIILHPANCYVSEFIQKLNP 275
GR++Q GTP+EI+ +PAN YV EF + ++
Sbjct: 237 GRLVQVGTPEEILTNPANDYVREFFRGVDR 266
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 225 bits (575), Expect = 1e-59
Identities = 120/316 (37%), Positives = 179/316 (56%), Gaps = 18/316 (5%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
I+ + YG AV NL +++GE LVL+G SG+GK+T L+ IN L GE+L+D
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR 149
+D + +LR + V QQ L P TVA N+ + L K R
Sbjct: 62 ------GEDISDLDP-VELRRK-IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR 113
Query: 150 VAEHLEIVNL--TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
E L++V L +++AD + LSGG +QRVG ARA A PILLMDEPF +LDP+ R +
Sbjct: 114 ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQ 173
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVS 267
LQ+E+ LQ++L KTIVFV+HDI+EA +L +RIA+M+ G I+Q TP EI+ +PAN +V
Sbjct: 174 LQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233
Query: 268 EFI----QKLNPITALVAADVMRVCSIDDESNIVHKISRQMPLIDIIDMVADNLGKIGVV 323
+F + L ++ + AD +R D ++ + + D +A + VV
Sbjct: 234 DFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRD---ALSDFLARGRSVLPVV 290
Query: 324 EDD-RIVGIITAIDIV 338
++D R +G +T D++
Sbjct: 291 DEDGRPLGTVTRADLL 306
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 219 bits (559), Expect = 1e-57
Identities = 107/231 (46%), Positives = 143/231 (61%), Gaps = 10/231 (4%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
AV NLE+ KGE LVL+G SG+GK+T ++ IN L GE+ +D + D
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG----EDIREQDPV 71
Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL--TK 161
LR+ + V QQ L P TV N+ L + L P + + R E L +V L +
Sbjct: 72 ELRR----KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAE 127
Query: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
+AD + LSGG +QRVG ARA A P+LLMDEPF +LDP+ R +LQ+E LQ++L K
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK 187
Query: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQK 272
TIVFV+HDI+EAFRL +RIAIM+ G I+Q GTP EI+ PAN +V+EF+
Sbjct: 188 TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVGA 238
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 215 bits (550), Expect = 1e-56
Identities = 94/214 (43%), Positives = 123/214 (57%), Gaps = 15/214 (7%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
+G V + NL V+KGE + ++G SG GKSTLLR I GL GEVL+D V
Sbjct: 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRP--VTGP 70
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
D + VFQ+ ALLPW TV NV LGLE E + R E LE+V
Sbjct: 71 GPD-----------IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVG 119
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L + D + LSGGM+QRV ARA AT +LL+DEPF +LD L R LQDELL L +
Sbjct: 120 LAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEG--GRIIQ 250
+KT++ V+HD++EA L +R+ ++ GRI +
Sbjct: 180 TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGE 213
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 214 bits (545), Expect = 4e-56
Identities = 104/247 (42%), Positives = 141/247 (57%), Gaps = 13/247 (5%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNP 97
+G +AV +L++KKGE + L+G SG GK+TLLR I G GE+L+D D V P
Sbjct: 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP 74
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEI 156
+ MVFQ +AL P TV NV GL+ + E K+RV E LE+
Sbjct: 75 EKRP-----------IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALEL 123
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
V L +AD K + LSGG +QRV ARA +LL+DEP S+LD +R +++ EL LQ
Sbjct: 124 VGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ 183
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPI 276
R+L T V+V+HD EA + +RIA+M GRI Q GTP+EI PA +V++FI + N
Sbjct: 184 RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIGESNIF 243
Query: 277 TALVAAD 283
V
Sbjct: 244 EGKVVER 250
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 213 bits (544), Expect = 6e-56
Identities = 96/213 (45%), Positives = 128/213 (60%), Gaps = 15/213 (7%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99
G V+A+ +L V++GE + L+G SG GKSTLLR I GL GEVLVD + V
Sbjct: 15 GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP--VTGPG 72
Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
D VFQQ ALLPW TV NV LGLE +P E + R E LE+V L
Sbjct: 73 PD-----------RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL 121
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
+ + + + LSGGM+QRV ARA A +LL+DEPFS+LD L R +LQ+ELL + R+
Sbjct: 122 SGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEG--GRIIQ 250
KT++ V+HDI+EA L +R+ ++ GRI+
Sbjct: 182 GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 212 bits (541), Expect = 1e-55
Identities = 94/215 (43%), Positives = 126/215 (58%), Gaps = 12/215 (5%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNP 97
YG V A+ +L V+ GE L L+G SG GK+TLLR I GL GE+L+D D V P
Sbjct: 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP 69
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
+ + MVFQ +AL P TVA N+ GL+ +P E ++RV E LE+V
Sbjct: 70 ERRN-----------IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV 118
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L + + LSGG +QRV ARA A +LL+DEP S+LD +R L++EL LQR
Sbjct: 119 GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
+L T ++V+HD EA L +RIA+M GRI+Q G
Sbjct: 179 ELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 203 bits (517), Expect = 7e-53
Identities = 102/293 (34%), Positives = 151/293 (51%), Gaps = 19/293 (6%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNP 97
+G + NL+++ GE +VL+G SG GKSTLLR I GL GE+L+D D + P
Sbjct: 13 FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP 72
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
++MVFQ +AL P TV N+ GL+ +P E RV E +++
Sbjct: 73 EKRG-----------IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL 121
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L + K LSGG +QRV ARA + L+DEP S+LD +R+ ++ E+ L
Sbjct: 122 GLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI--QKLNP 275
+L T ++V+HD EA L +RI +M GRI Q GTP E+ PAN +V+ FI +N
Sbjct: 182 RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSPPMNF 241
Query: 276 ITALVAADVMRVCSIDDESNIVHKIS---RQMPLIDIIDMVADNLGKIGVVED 325
+ A V AD + +D+ + ++ R + + LG + VVE
Sbjct: 242 LKAEVKADGNGLSIPEDKKVALEQVILGIRPEHI--SLSASGIILGTVEVVEP 292
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 190 bits (485), Expect = 3e-49
Identities = 99/242 (40%), Positives = 134/242 (55%), Gaps = 5/242 (2%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
+ K + G V+A+ +LE+ KGEI ++G SGAGKSTLLR IN L G V VD
Sbjct: 7 VSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVD 66
Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR 149
A LR+LR + M+FQ F LL RTV NV LE +P E K R
Sbjct: 67 GQDLT----ALSEAELRQLR-QKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209
VAE LE+V L+ AD LSGG KQRV ARA A ILL DE S+LDP +
Sbjct: 122 VAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEF 269
+ L + R+L TIV ++H++ R+ +R+A+++ GR+++ GT E+ +P + EF
Sbjct: 182 ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEF 241
Query: 270 IQ 271
I
Sbjct: 242 IG 243
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 189 bits (482), Expect = 7e-49
Identities = 100/266 (37%), Positives = 146/266 (54%), Gaps = 9/266 (3%)
Query: 28 YSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87
SI+ ++ +G A+ +L++K GE++ L+G SGAGKSTLLR I GL G +
Sbjct: 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 88 VDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF--LDIPDVE 145
++ F D + L +R V VFQ +AL P TVA N+ GL+ + E
Sbjct: 61 LNGRVLF------DVSNLA-VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAE 113
Query: 146 RKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
++RV E L +V L AD LSGG +QRV ARA A +LL+DEPF +LD +R
Sbjct: 114 IRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
L+ L L +L T VFV+HD EA L +R+ ++ GRI Q G P E+ HPA+ +
Sbjct: 174 KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
Query: 266 VSEFIQKLNPITALVAADVMRVCSID 291
V+ F+ ++N + V ++V + D
Sbjct: 234 VARFLGEVNVLPGEVILGQLQVGAHD 259
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 188 bits (480), Expect = 2e-48
Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 14/235 (5%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVN- 96
YG A+ +L++K+GE L+G SG GK+TLLR I G GE+L+D K N
Sbjct: 9 FYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD-GKDITNL 67
Query: 97 -PYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE 155
P+ N VFQ +AL P TV N+ GL +P E K RVAE L+
Sbjct: 68 PPHKRPVN-----------TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 156 IVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
+V L +A+ K + LSGG +QRV ARA +LL+DEP +LD +R +Q EL L
Sbjct: 117 LVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176
Query: 216 QRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
Q++L T VFV+HD EA + +RIA+M G+I Q GTP+EI PAN +V++FI
Sbjct: 177 QKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 179 bits (456), Expect = 1e-45
Identities = 97/223 (43%), Positives = 129/223 (57%), Gaps = 7/223 (3%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPY 98
G V+A+ +L V KGEI ++G SGAGKSTL+R INGL G VLVD TD ++
Sbjct: 16 GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGK 75
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
LRK R + M+FQ F LL RTV NV L LE +P E + RV E LE+V
Sbjct: 76 E-----LRKARRR-IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVG 129
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L AD LSGG KQRVG ARA A +LL DE S+LDP + L + R+
Sbjct: 130 LEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE 189
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
L TIV ++H++ R+ +R+A+ME G +++ GT +E+ +P
Sbjct: 190 LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 174 bits (443), Expect = 3e-44
Identities = 86/289 (29%), Positives = 140/289 (48%), Gaps = 11/289 (3%)
Query: 30 IKKHDKVSEYGMVSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88
I+ + +YG + + EV+ GEI L+G +GAGK+TLL+ + GL GE+LV
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 89 DTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKS 148
P K+R + V Q+ +L P TV N+E + E +
Sbjct: 65 LGYDVVKEP--------AKVRRR-IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEE 115
Query: 149 RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
R+ E LE+ L A+ K+ LSGGMKQR+ A A +L++DEP S LDP R +
Sbjct: 116 RIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175
Query: 209 QDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268
+ L L ++ TI+ +H + EA L +R+ I+ G+II GTP+E+ V E
Sbjct: 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIE 235
Query: 269 FIQKLNPITALVAADVMRVCSIDDESNIVHKISRQMPLIDIIDMVADNL 317
+ + L+ + V ++ + I+ + + I+ I++ +L
Sbjct: 236 LEPERLELAELL-EGLKLVKGEEELAEILEALLEEGVKIESIEVKEPSL 283
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 173 bits (441), Expect = 5e-44
Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 15/239 (6%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
+G + +L V+KGE++V++G SG+GKSTLLR +NGL G + VD G
Sbjct: 12 FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD---GEDVGD 68
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIV 157
D LR+ V MVFQQF L P TV NV L + + E + + E LE V
Sbjct: 69 KKDILKLRRK----VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV 124
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L AD LSGG +QRV ARA A ++L DEP S+LDP L E+L + +
Sbjct: 125 GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP----ELVGEVLDVMK 180
Query: 218 KLKK---TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKL 273
L + T++ V+H++ A + +R+ M+ G+II+ G P+E +P + +F+ K+
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFLSKI 239
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 171 bits (436), Expect = 2e-43
Identities = 86/222 (38%), Positives = 125/222 (56%), Gaps = 7/222 (3%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L+V++GEIL ++G SG+GKSTLLR I GL GEVL+D + L +L
Sbjct: 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG----EDISGLSEAELYRL 75
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
R + M+FQ AL TV NV L E + + E + V E LE V L D
Sbjct: 76 RRR-MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP 134
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGGMK+RV ARA A +LL DEP + LDP+ + D + +L+++L T + V+
Sbjct: 135 AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT 194
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEF 269
HD++ AF + +RIA++ G+I+ GTP+E+ + V +F
Sbjct: 195 HDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD-DPLVRQF 235
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 168 bits (428), Expect = 2e-42
Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 10/223 (4%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
++ + +G V+A+ NL++ GE +VL+G SG GK+T LR I GL G + +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR 149
+ + D ++ +MVFQ +AL P TV N+ GL+ +P E R
Sbjct: 61 -GRDVTDLPPKDRDI---------AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER 110
Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209
V E E++ + D K LSGG +QRV RA + LMDEP S+LD +R++++
Sbjct: 111 VREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
EL LQ++L T ++V+HD EA + +RIA+M G+I Q G
Sbjct: 171 AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 168 bits (428), Expect = 2e-42
Identities = 87/249 (34%), Positives = 135/249 (54%), Gaps = 10/249 (4%)
Query: 27 RYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV 86
RY +K V E G V AV + ++++GE L L+G SG+GKSTL R + GL P G +
Sbjct: 289 RYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI 348
Query: 87 LVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEF-LDIPD 143
+ D LR+LR + MVFQ +L P TV + L
Sbjct: 349 IFDGQ-----DLDLTGGELRRLR-RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402
Query: 144 VERKSRVAEHLEIVNL-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202
ER++RVAE LE+V L ++ D + LSGG +QRV ARA A +L++DEP S+LD
Sbjct: 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462
Query: 203 LIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
++ ++ + L LQ +L T +F+SHD+ + +R+A+M GRI++ G +++ +P
Sbjct: 463 SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQ 522
Query: 263 NCYVSEFIQ 271
+ Y + +
Sbjct: 523 HPYTRKLLA 531
Score = 147 bits (372), Expect = 5e-36
Identities = 80/251 (31%), Positives = 128/251 (50%), Gaps = 13/251 (5%)
Query: 37 SEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP----VVRGEVLVDTDK 92
++ G V AV + EV+ GEIL ++G SG+GKSTL ++ GL P + GEV++D
Sbjct: 17 TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG-- 74
Query: 93 GFVNPYAADANVLRKLRMHTVSMVFQ-QFALL-PWRTVARNVELGLEFLDIPDV-ERKSR 149
+ +RKLR ++M+FQ L P T+ + L E + R
Sbjct: 75 --RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR 132
Query: 150 VAEHLEIVNL--TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
E LE V L + D + LSGGM+QRV A A A +L+ DEP ++LD + +
Sbjct: 133 AVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVS 267
+ D L LQR+L ++F++HD+ L +R+ +M G I++ G +EI+ +P + Y
Sbjct: 193 ILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTR 252
Query: 268 EFIQKLNPITA 278
+ + +
Sbjct: 253 GLLAAVPRLGD 263
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 166 bits (422), Expect = 9e-42
Identities = 92/247 (37%), Positives = 131/247 (53%), Gaps = 14/247 (5%)
Query: 28 YSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87
SI+ + +G A+ +L++ GE++ L+G SG+GK+TLLR I GL G +L
Sbjct: 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 88 VDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDI----PD 143
+ DA ++ V VFQ +AL TV NV GL P+
Sbjct: 61 FGGE---------DATD-VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPE 110
Query: 144 VERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203
E +++V E L++V L AD LSGG +QRV ARA A +LL+DEPF +LD
Sbjct: 111 AEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 204 IRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN 263
+R L+ L L +L T VFV+HD EA + +R+ +M GRI Q GTP E+ HPA+
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAS 230
Query: 264 CYVSEFI 270
+V F+
Sbjct: 231 PFVYSFL 237
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 166 bits (421), Expect = 1e-41
Identities = 75/200 (37%), Positives = 100/200 (50%), Gaps = 5/200 (2%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L ++KGE + ++G SG+GKSTLL + GL GEV VD + L
Sbjct: 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG----TDISKLSEKELAAF 79
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
R + VFQ F LLP T NVEL L +P ER+ R E LE V L + +
Sbjct: 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS 139
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
LSGG +QRV ARA A I+L DEP +LD + + L L ++ TIV V+H
Sbjct: 140 ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199
Query: 229 DINEAFRLGNRIAIMEGGRI 248
D A +RI + G+I
Sbjct: 200 DPELA-EYADRIIELRDGKI 218
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 164 bits (416), Expect = 4e-41
Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 12/223 (5%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+LEV++G+ V++G +G+GKS LL +I G G++L++ D + P
Sbjct: 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---------- 68
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
+S V Q +AL P TV +N+ GL+ + E + +V E E++ + + K
Sbjct: 69 -EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG +QRV ARA ILL+DEPFS+LD + +L++EL ++++ T++ V+
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
HD EA+ L +++AIM G++IQ G P+E+ P N +V+EF+
Sbjct: 188 HDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFL 230
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 162 bits (412), Expect = 1e-40
Identities = 75/218 (34%), Positives = 110/218 (50%), Gaps = 40/218 (18%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
++ + YG + + +L ++ GEI+ L+G SG+GKSTLLR I GL G +L+D
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR 149
+ + L LR + MVFQ FAL P TV N+ LGL
Sbjct: 61 GE-----DLTDLEDELPPLRRR-IGMVFQDFALFPHLTVLENIALGL------------- 101
Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209
SGG +QRV ARA A +LL+DEP S+LDP+ R ++
Sbjct: 102 ---------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGR 247
L +LQ +L T+V V+HD++EA RL +R+ ++ G+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 156 bits (397), Expect = 6e-39
Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 15/215 (6%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
SA+ +L + GE++V++G SG GK+TLL I G RG + ++ + P A
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN-GRRIEGPGAER 76
Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
+VFQ ALLPW V NV GL+ I +R+ + L +V L
Sbjct: 77 G------------VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG 124
Query: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
I LSGGM+QRVG ARA A +LL+DEPF +LD L R ++Q+ LL L ++ K
Sbjct: 125 AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK 184
Query: 222 TIVFVSHDINEAFRLGNRIAIMEG--GRIIQCGTP 254
++ ++HDI EA L R+ ++ GR+++
Sbjct: 185 QVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 156 bits (397), Expect = 6e-39
Identities = 83/225 (36%), Positives = 128/225 (56%), Gaps = 10/225 (4%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L+V +GEIL ++G SG+GKSTLLR I GL +GE+L+D + + L ++
Sbjct: 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE----DIPQLSEEELYEI 83
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVNLT-KWADCK 166
R + ++FQQ AL TV NV L E +P+ + V LE+V L AD
Sbjct: 84 RKR-MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY 142
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA-LQRKLKKTIVF 225
+ LSGGM++RV ARA A +L +DEP S LDP I + DEL+ L L T++
Sbjct: 143 PSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP-ISAGVIDELIRELNDALGLTVIM 201
Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
V+HD++ + +R+A++ G++I GTP+E++ + +V +F
Sbjct: 202 VTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD-DPWVRQFF 245
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 155 bits (394), Expect = 1e-38
Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 18/249 (7%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-----VVRGEVLVDTDK 92
+ G+V AV + E+KKGEIL ++G SG+GKS L ++I GL P +V GE+L D
Sbjct: 14 DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK- 72
Query: 93 GFVNPYAADANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLE--FLDIPDVERKS 148
+ + LRK+R ++M+FQ +L P T+ + L + E K
Sbjct: 73 ---DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE 129
Query: 149 RVAEHLEIVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
R E LE+V + + ++ LSGGM+QRV A A A +L+ DEP ++LD +
Sbjct: 130 RAIELLELVGIPD-PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTV 188
Query: 205 RMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANC 264
+ ++ D L LQR+ ++ ++HD+ + +R+A+M GRI++ G +EI +P +
Sbjct: 189 QAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHP 248
Query: 265 YVSEFIQKL 273
Y + L
Sbjct: 249 YTRGLLNSL 257
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 155 bits (393), Expect = 2e-38
Identities = 76/208 (36%), Positives = 106/208 (50%), Gaps = 6/208 (2%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
V A+ NLE++ GE + ++G SG+GKSTLL + GL GEVL++ +
Sbjct: 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING----KDLTKLS 73
Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
L KLR + VFQ F LLP TV NVEL L RK E LE++ L
Sbjct: 74 EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED 133
Query: 162 WADCK-INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
K + LSGG +QRV ARA I+L DEP +LD + + L L ++
Sbjct: 134 RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERG 193
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRI 248
KTI+ V+HD E + +R+ ++ G+I
Sbjct: 194 KTIIMVTHD-PELAKYADRVIELKDGKI 220
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 154 bits (390), Expect = 4e-38
Identities = 86/217 (39%), Positives = 117/217 (53%), Gaps = 14/217 (6%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+LE++KGE ++L+G +G+GKSTLL+ +NGL GEVLVD G LR+
Sbjct: 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVD---GLDTSSEKSLLELRQ- 79
Query: 109 RMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164
V +VFQ Q TV V GLE L +P E + RVAE LE+V L + D
Sbjct: 80 ---KVGLVFQNPDDQLFG---PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD 133
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
LSGG KQRV A A G ILL+DEP + LDP R L + L L+ + KTI+
Sbjct: 134 RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTII 193
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
V+HD+ +R+ +++ G+I+ G P EI
Sbjct: 194 IVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 154 bits (390), Expect = 4e-38
Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 12/224 (5%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + + + KGEI ++G +G+GKSTLL+ + GL GEVL+D +
Sbjct: 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG----KDIA 67
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG----LEFLDIPDVERKSRVAEHL 154
+ L K ++ V Q + TV V LG L P E + V E L
Sbjct: 68 SLSPKELAK----KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEAL 123
Query: 155 EIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
E++ L AD ++ LSGG +QRV ARA A PILL+DEP S LD ++ + + L
Sbjct: 124 ELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
L R+ T+V V HD+N A R + + +++ G+I+ GTP+E++
Sbjct: 184 LNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 153 bits (389), Expect = 5e-38
Identities = 82/203 (40%), Positives = 112/203 (55%), Gaps = 16/203 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L +KKGE ++++G +G+GKSTLLR +NGL GEVLVD L++L
Sbjct: 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD-------GKDLTKLSLKEL 73
Query: 109 RMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164
R V +VFQ QF TV V GLE L +P+ E + RV E LE+V L D
Sbjct: 74 RRK-VGLVFQNPDDQFFGP---TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD 129
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
LSGG KQRV A A ILL+DEP + LDP R L + L L+ + KTI+
Sbjct: 130 RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTII 188
Query: 225 FVSHDINEAFRLGNRIAIMEGGR 247
V+HD++ L +R+ ++E G+
Sbjct: 189 IVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 151 bits (384), Expect = 2e-37
Identities = 83/223 (37%), Positives = 118/223 (52%), Gaps = 14/223 (6%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
I+ + +G + +L VKKGE++V++G SG+GKSTLLR IN L G +++D
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKS 148
K D + +LR V MVFQQF L P TV N+ L + + E +
Sbjct: 61 GLK-----LTDDKKNINELRQK-VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE 114
Query: 149 RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
R E LE V L AD LSGG +QRV ARA A ++L DEP S+LDP L
Sbjct: 115 RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP----EL 170
Query: 209 QDELLALQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRI 248
E+L + + L + T+V V+H++ A + +R+ M+ GRI
Sbjct: 171 VGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 150 bits (381), Expect = 4e-37
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 13/217 (5%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NLE+ +GE++ ++G SGAGKSTLLRS+NGL GE+L + V LRKL
Sbjct: 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG----VQITKLKGKELRKL 79
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGL--------EFLDIPDVERKSRVAEHLEIVNLT 160
R + M+FQQF L+P +V NV LG + E K++ + LE V +
Sbjct: 80 RRD-IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL 138
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
A + + LSGG +QRV ARA I+L DEP +SLDP ++ D L + ++
Sbjct: 139 DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG 198
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
T++ H ++ A + +RI ++ GRI+ G E+
Sbjct: 199 ITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 149 bits (379), Expect = 9e-37
Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 10/218 (4%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99
G V A+ + +KKGE L L+G SG+GKSTL R+I GL G ++ D
Sbjct: 16 GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG-----KDLL 70
Query: 100 ADANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVE--RKSRVAEHLE 155
+ LRK+R + MVFQ +L P T+ + L + RK V L
Sbjct: 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV 130
Query: 156 IVNLTK-WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
V L + + + LSGG +QRV ARA A +L+ DEP S+LD ++ ++ D L
Sbjct: 131 GVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
LQ +L T++F++HD+ ++ +R+A+M G+I++ G
Sbjct: 191 LQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 149 bits (378), Expect = 9e-37
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 11/229 (4%)
Query: 29 SIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88
I+ K + G AV +L V KGEI L+G +GAGK+T L+ + G G
Sbjct: 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-- 59
Query: 89 DTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKS 148
++N Y+ + + R + Q AL TV ++ +P E K
Sbjct: 60 -----YINGYSIRTD-RKAARQS-LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKE 112
Query: 149 RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
V L ++ LT A+ + LSGGMK+++ A A G +LL+DEP S LDP R +
Sbjct: 113 EVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172
Query: 209 QDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
D +L +++ ++I+ +H ++EA L +RIAIM G++ G+PQE+
Sbjct: 173 WDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 149 bits (377), Expect = 1e-36
Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 15/218 (6%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-DTDKGFVNPYAADANVLRK 107
+L + GE + L+G SGAGKSTLLR +NGL G VL+ TD + A LR+
Sbjct: 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKA-----LRQ 75
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGL--------EFLDIPDVERKSRVAEHLEIVNL 159
LR + M+FQQF L+ +V NV G + E K R LE V L
Sbjct: 76 LRRQ-IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL 134
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
A + + LSGG +QRV ARA ++L DEP +SLDP ++ D L + R+
Sbjct: 135 LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE 194
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
T++ H ++ A +RI ++ GRI+ G P E+
Sbjct: 195 GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 148 bits (374), Expect = 3e-36
Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV-----VRGEVLVDTDK 92
YG A+ +L++ KGEI L+G SG GKSTLLR +N L + GEVL+D
Sbjct: 9 YYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK- 67
Query: 93 GFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDI-PDVERKSRVA 151
+ Y D +VL LR V MVFQ+ P ++ NV GL I E RV
Sbjct: 68 ---DIYDLDVDVLE-LRR-RVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDERVE 121
Query: 152 EHLEIVNLTKWADCKINM--LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209
E L L +++ LSGG +QR+ ARA A +LL+DEP S+LDP+ +++
Sbjct: 122 EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE 181
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ + L+++ TIV V+H++ +A R+ +R A + GR+++ G ++I
Sbjct: 182 ELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 147 bits (372), Expect = 5e-36
Identities = 78/232 (33%), Positives = 130/232 (56%), Gaps = 12/232 (5%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+LE+++GE L ++G SG+GKSTL R + GL G +L+D P A K
Sbjct: 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG-----KPLAPKKR--AKA 79
Query: 109 RMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL-TKWADC 165
V MVFQ +L P RTV R + L + ++ R+AE L+ V L + D
Sbjct: 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQ--RIAELLDQVGLPPSFLDR 137
Query: 166 KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
+ + LSGG +QR+ ARA +L++DEP S+LD ++ ++ + LL L+++ T +F
Sbjct: 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLF 197
Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPIT 277
+SHD+ + +RIA+M+ G+I++ G +E++ HP++ Y E ++ + I
Sbjct: 198 ISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELLEAVPSID 249
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 144 bits (364), Expect = 4e-35
Identities = 77/205 (37%), Positives = 109/205 (53%), Gaps = 18/205 (8%)
Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAPVVRGE------VLVDTDKGFVNPYAADANVLRK 107
E+ + G SGAGKSTLLR I GL G VL D+ K P
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP---------- 71
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
+ + +VFQQ+AL P V N+ GL+ + E + V E L+++ L +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKR--NREDRISVDELLDLLGLDHLLNRYP 129
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG KQRV ARA A +LL+DEPFS+LD +R++L EL +++ L ++FV+
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCG 252
HD++EA L +RI +ME GR+ G
Sbjct: 190 HDLSEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 136 bits (344), Expect = 8e-33
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 24/221 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK-GFVNP 97
+G V A+ +L V+ GE+ L+G +GAGKSTL++ ++G+ P GE+L+D F +P
Sbjct: 18 FGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP 77
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE------FLDIPDVERKSRVA 151
A ++ V Q+ +L+P +VA N+ LG E +D + R++R
Sbjct: 78 RDA--------LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL 129
Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
L + L D + LS +Q V ARA + A +L++DEP ++L + +
Sbjct: 130 --LARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV----KETER 183
Query: 212 LLALQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRII 249
L L R+LK I+++SH ++E F + +RI ++ GR++
Sbjct: 184 LFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
Score = 86.7 bits (215), Expect = 8e-18
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 17/223 (7%)
Query: 35 KVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGF 94
+V V + V+ GEIL + GL GAG++ L R++ G P GE+L+D K
Sbjct: 265 EVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD-GKPV 323
Query: 95 VNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG-----LEFLDIPDVERKSR 149
DA K + V + L+ ++A N+ L I + ++
Sbjct: 324 RIRSPRDA---IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERAL 380
Query: 150 VAEHLEIVNL-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
++ + + T + I LSGG +Q+V AR AT +L++DEP +D +
Sbjct: 381 AERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID----VGA 436
Query: 209 QDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRI 248
+ E+ L R+L K I+ +S ++ E L +RI +M GRI
Sbjct: 437 KAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRI 479
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 134 bits (338), Expect = 4e-32
Identities = 75/211 (35%), Positives = 109/211 (51%), Gaps = 12/211 (5%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-DTDKGFVNPYAADANVLRK 107
+L V GEI+ ++G SGAGKSTLL I G GE+L+ D P
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE-------- 70
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
VSM+FQ+ L TVA+N+ LGL + E++ +V V L +
Sbjct: 71 ---RPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP 127
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG +QRV AR PILL+DEPFS+LDP +R + + L + K T++ V+
Sbjct: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
H +A R+ +R+ ++ GRI G+ QE++
Sbjct: 188 HHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 132 bits (335), Expect = 1e-31
Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 22/243 (9%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG A+ NL++ K ++ L+G SG GKSTLLR +N L P R GEVL+D
Sbjct: 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKN- 75
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
+ D LR+ V MVFQ+ P ++ NV GL I D E V
Sbjct: 76 -IYDPKVDVVELRR----RVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESS 129
Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
L+ L W + K + LSGG +QR+ ARA A +LLMDEP S+LDP+ ++
Sbjct: 130 LKKAAL--WDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLK 187
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVS 267
+++ + L++K TIV V+H++ +A R+ + A G +++ G +I +P +
Sbjct: 188 IEELITELKKKY--TIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKHKRTE 245
Query: 268 EFI 270
++I
Sbjct: 246 DYI 248
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 132 bits (334), Expect = 1e-31
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 21/230 (9%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + +L V+KGEI L+G +GAGKSTLL++I GL GE+ +
Sbjct: 14 YGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF--------- 64
Query: 99 AADANVLRKLRMHTVSMVFQQFAL---LPWRTVARNVELGLE----FLDIPDVERKSRVA 151
V ++ + + V Q+ ++ P TV V LG + + + K +V
Sbjct: 65 --GKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVD 121
Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
E LE V + D +I LSGG KQRV ARA A +LL+DEPF+ +D + + D
Sbjct: 122 EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD- 180
Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
LL R+ KT++ V+HD+ +R+ + +I G P+E++
Sbjct: 181 LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTEE 229
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 129 bits (327), Expect = 8e-31
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 42/214 (19%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + + +L ++ GEI+ ++G +GAGKSTLL+++ GL GE+L+D
Sbjct: 9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG-------- 60
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
+ A L + +AR + + V + LE++
Sbjct: 61 -------------------KDLASLSPKELARKI---------------AYVPQALELLG 86
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L AD N LSGG +QRV ARA A PILL+DEP S LD ++ L + L L R+
Sbjct: 87 LAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
KT+V V HD+N A R +R+ +++ GRI+ G
Sbjct: 147 RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 128 bits (323), Expect = 2e-30
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 13/230 (5%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
I+ + V +YG AV + V++GEI L+G +GAGK+T ++ + L G
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR---- 56
Query: 90 TDKGFVNPYAA--DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERK 147
V + + +R+ + +VFQ ++ T N+ + +P ER+
Sbjct: 57 ---ATVAGHDVVREPREVRR----RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERR 109
Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
R+ E L+ V L + AD + SGGM++R+ AR+ +L +DEP LDP R
Sbjct: 110 ERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAH 169
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ + + L+ + TI+ +H + EA +L +R+AI++ GRII GTP+E+
Sbjct: 170 VWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 128 bits (323), Expect = 3e-30
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 6/201 (2%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ + KGE + L G SGAGKSTLL+ I G RG++LV+ + LR+
Sbjct: 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVN-GHDLSRLKGREIPFLRR- 79
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
+ +VFQ F LLP RTV NV L L + P E + RV+E L++V L A +
Sbjct: 80 ---QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS 136
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
LSGG +QRV ARA +LL DEP +LDP + + + R L T++ +H
Sbjct: 137 QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATH 195
Query: 229 DINEAFRLGNRIAIMEGGRII 249
D+ R+ +R+ +E GR++
Sbjct: 196 DLELVNRMRHRVLALEDGRLV 216
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 125 bits (316), Expect = 1e-29
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 48/246 (19%)
Query: 27 RYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV 86
+ + K Y V AV + +K+GE L L+G SG GKSTL R I GL GE+
Sbjct: 13 YFPVGKGFGKKRY--VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI 70
Query: 87 LVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER 146
L + G + + ER
Sbjct: 71 LFE---------------------------------------------GKDITKLSKEER 85
Query: 147 KSRVAEHLEIVNLTK-WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
+ RV E LE V L + + + LSGG +QR+G ARA A +++ DEP S+LD ++
Sbjct: 86 RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ 145
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
++ + L LQ +L T +F+SHD++ + +RIA+M G+I++ G +E+ +P + Y
Sbjct: 146 AQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY 205
Query: 266 VSEFIQ 271
+
Sbjct: 206 TKALLS 211
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 125 bits (315), Expect = 2e-29
Identities = 65/210 (30%), Positives = 98/210 (46%), Gaps = 46/210 (21%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG +A+ +L V+KGEI L+G +GAGK+TL++ I GL GE+ V +
Sbjct: 10 YGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL----GKDIK 65
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
V R+ + + ++ +L TV N++L
Sbjct: 66 KEPEEVKRR-----IGYLPEEPSLYENLTVRENLKL------------------------ 96
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
SGGMKQR+ A+A +L++DEP S LDP R + L L+++
Sbjct: 97 ------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE 144
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRI 248
KTI+ SH + EA RL +R+AI+ GRI
Sbjct: 145 -GKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 125 bits (314), Expect = 2e-29
Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG A+ L+ +GE LVL+G SGAGKS+LLR +N L G + + + +
Sbjct: 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT 71
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARN-VELGLEFLDIPDVERKSRVAEHLEIV 157
+D + R LR V MVFQQ+ L P TV N +E L + + +R + L+ +
Sbjct: 72 PSDKAI-RDLR-RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL 129
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L +AD LSGG +QRV ARA +LL DEP ++LDP I ++ + L
Sbjct: 130 RLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA- 188
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGT 253
+ T V V+H++ A + +R+ ME G I++ G
Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 124 bits (313), Expect = 3e-29
Identities = 63/215 (29%), Positives = 112/215 (52%), Gaps = 19/215 (8%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+LE+ GE + ++G SG+GKSTLL+ + GL +G +L+D D ++ + LR+
Sbjct: 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS-----LRR 547
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCK 166
V V Q L ++ N+ LG ++ +++A H I NL D
Sbjct: 548 Q----VGYVLQD-PFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTP 602
Query: 167 I----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
+ LSGG +QR+ ARA + ILL+DE S+LDP + LL + + +T
Sbjct: 603 VGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRT 660
Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
++ ++H ++ R +RI +++ G+I++ G+ +E+
Sbjct: 661 VIIIAHRLS-TIRSADRIIVLDQGKIVEQGSHEEL 694
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 124 bits (312), Expect = 5e-29
Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNP 97
+G + A+ + V+ GEI L+G +GAGK+TL I+G G VL D D + P
Sbjct: 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP 69
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE------FLDIPDVERKS--- 148
+ ++ + FQ L P TV NV + + L +
Sbjct: 70 H--------EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR 121
Query: 149 -RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
R E LE V L AD LS G ++R+ ARA AT +LL+DEP + L+P
Sbjct: 122 ERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
L + + L R+ T++ V HD++ L +R+ +++ GR+I GTP E+ +P
Sbjct: 182 LAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 123 bits (311), Expect = 5e-29
Identities = 68/215 (31%), Positives = 102/215 (47%), Gaps = 22/215 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + + EVK GE L ++G +GAGKSTLL++I GL G + V
Sbjct: 9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP------ 62
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWR---TVARNVELGL----EFLDIPDVERKSRVA 151
L K R + V Q + +V V +GL K++V
Sbjct: 63 ------LEKER-KRIGYV-PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD 114
Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
E LE V L++ AD +I LSGG +QRV ARA +LL+DEPF+ +DP + + +
Sbjct: 115 EALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174
Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGG 246
L L+R+ TI+ V+HD+ +R+ ++
Sbjct: 175 LRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRT 208
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 123 bits (311), Expect = 7e-29
Identities = 77/237 (32%), Positives = 117/237 (49%), Gaps = 21/237 (8%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNP 97
+G ++AV +LEV+ GEI+ L+G +GAGK+TL I G G V+ D + P
Sbjct: 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP 73
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE-------FLDIPDVERKSRV 150
+ R R+ ++ FQ L P TV NV +G L P ++ R
Sbjct: 74 H-------RIARL-GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE 125
Query: 151 A-----EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
A E LE V L + AD LS G ++R+ ARA AT +LL+DEP + L+P
Sbjct: 126 ARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEET 185
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
L + + L+ + TI+ + HD+ L +RI ++ G +I GTP+E+ +P
Sbjct: 186 EELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 122 bits (307), Expect = 1e-28
Identities = 73/206 (35%), Positives = 103/206 (50%), Gaps = 14/206 (6%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+L +GEI ++G SG+GKSTLL I G G VL++ D P
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD-------- 69
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLE-FLDIPDVERKSRVAEHLEIVNLTKWADCK 166
VSM+FQ+ L TV +NV LGL L + +R+ + L V L
Sbjct: 70 ---RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ-AIEVALARVGLAGLEKRL 125
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226
LSGG +QRV AR P+LL+DEPF++LDP +R + D +L L + K T++ V
Sbjct: 126 PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185
Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCG 252
+H +A RL R+ ++ GRI G
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 122 bits (307), Expect = 2e-28
Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 15/258 (5%)
Query: 26 SRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGE 85
+ +++ D YG + +L+ G+++ ++G SG+GKST LR IN L G
Sbjct: 3 AENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS 62
Query: 86 VLVDTDKGFVNP------YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNV-ELGLEF 138
+ V+ ++ + AD L++LR + MVFQ F L TV NV E +
Sbjct: 63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR-LGMVFQHFNLWSHMTVLENVIEAPVHV 121
Query: 139 LDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFS 198
L + E R ++L V + + AD LSGG +QRV ARA A ++L DEP S
Sbjct: 122 LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTS 181
Query: 199 SLDPLIRMRLQDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQ 255
+LDP L E+L + + L +T+V V+H++ A + + + + G+I + G P+
Sbjct: 182 ALDP----ELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPE 237
Query: 256 EIILHPANCYVSEFIQKL 273
++ +P + + +F+ L
Sbjct: 238 QVFGNPQSPRLKQFLSSL 255
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 120 bits (303), Expect = 5e-28
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 19/231 (8%)
Query: 26 SRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGE 85
+++ + V A +L VKKGEI L+G +GAGKSTL++ + GL GE
Sbjct: 1 MEPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 86 VLVDTDK-GFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDV 144
+ VD + +P A + MV Q F L+P TVA N+ LGLE +
Sbjct: 61 IRVDGKEVRIKSPRDA--------IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLI 112
Query: 145 ERK---SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
+R+ +R+ E E L D K+ LS G +QRV +A GA +L++DEP + L
Sbjct: 113 DRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLT 172
Query: 202 PLIRMRLQDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRII 249
P DEL + R+L KTI+F++H + E + +R+ ++ G+++
Sbjct: 173 PQ----EADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
Score = 82.5 bits (204), Expect = 2e-16
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 32 KHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD 91
+ V + V+AV + EV+ GEI+ + G++G G+S L+ +I+GL G +L++
Sbjct: 261 EDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLN-- 318
Query: 92 KGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG---------LEFLDIP 142
G R+L + V L+ ++A N+ LG FLD
Sbjct: 319 -GKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377
Query: 143 DVERKS-RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
+ + + + E ++ + A LSGG +Q++ AR A +L+ +P LD
Sbjct: 378 AIRKFARELIEEFDVRAPSPDA--PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
Query: 202 ----PLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
I RL + R K ++ +S D++E L +RIA++ GRI+ P+E
Sbjct: 436 VGAIEFIHERLLEL-----RDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 120 bits (302), Expect = 6e-28
Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 9/225 (4%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + A+ +LEV++GEI+ L+G +GAGK+TLL++I GL G ++ D + +
Sbjct: 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGED--ITGL 70
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV- 157
+ + V + + P TV N+ LG ++ + E E+
Sbjct: 71 PPHERARLGI-----AYVPEGRRIFPRLTVEENLLLGAYARR-DKEAQERDLEEVYELFP 124
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L + + + LSGG +Q + ARA + +LL+DEP L P I + + + L++
Sbjct: 125 RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK 184
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
+ TI+ V + A + +R ++E GRI+ GT E++ P
Sbjct: 185 EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 117 bits (295), Expect = 5e-27
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 13/221 (5%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNP 97
YG + +L V +GEI+ L+G +GAGK+TLL++I GL P G + D D + P
Sbjct: 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP 69
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
+ + R + V + + P TV N+ LG +RK+R+ E+
Sbjct: 70 H-------ERARA-GIGYVPEGRRIFPELTVEENLLLGAYAR--RRAKRKARLERVYELF 119
Query: 158 -NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
L + LSGG +Q + ARA + +LL+DEP L P I + + + L
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL- 178
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
R TI+ V + A + +R ++E GR++ GT E+
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 117 bits (294), Expect = 5e-27
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 24/224 (10%)
Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP------VVRGEVLVDTDKG-FVNPY 98
+ AN + I L G SG+GK++L+ I GL + G VLVD +KG F+ P
Sbjct: 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE 74
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
R+ + VFQ L P TV N+ G+ ++ + ++
Sbjct: 75 ------KRR-----IGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQL------VALLG 117
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
+ D LSGG KQRV RA T +LLMDEP +SLD + + L L+ +
Sbjct: 118 IEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE 177
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
+ I++VSH ++E RL +R+ ++E G++ G +E+ P
Sbjct: 178 INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPD 221
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 114 bits (287), Expect = 3e-26
Identities = 76/212 (35%), Positives = 103/212 (48%), Gaps = 7/212 (3%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV-LVDTDKGFVNPY 98
G +S + L VK+GE + ++G SG+GKSTLL + GL GEV L+
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLH----- 75
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
D + LR V VFQ F L+P T NV L LE + ++ LE V
Sbjct: 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVG 135
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L K LSGG +QRV ARAFA +L DEP +LD ++ D L AL R+
Sbjct: 136 LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQ 250
T+V V+HD A R +R + GR+++
Sbjct: 196 RGTTLVLVTHDPQLAARC-DRQLRLRSGRLVE 226
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 112 bits (282), Expect = 1e-25
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 60/209 (28%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG +A+ +L +K GEI+ L+G +G+GKSTLLR+I GL GE+L+D
Sbjct: 9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG-------- 60
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
A + + + V Q
Sbjct: 61 KDIAKLPLEELRRRIGYVPQ---------------------------------------- 80
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
LSGG +QRV ARA +LL+DEP S LDP R RL + L L +
Sbjct: 81 -----------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGR 247
+T++ V+HD A +R+ +++ G+
Sbjct: 130 -GRTVIIVTHDPELAELAADRVIVLKDGK 157
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 111 bits (280), Expect = 2e-25
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 15/211 (7%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + +L VKKGEI +G +GAGK+T ++ I GL GE+ D K +
Sbjct: 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD-GKSYQKNI 68
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
A + + + P T N+ L L I K R+ E L++V
Sbjct: 69 EALRRI---------GALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVG 115
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L A K+ S GMKQR+G A A +L++DEP + LDP L++ +L+L R
Sbjct: 116 LKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL-RD 174
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRII 249
T++ SH ++E ++ +RI I+ G++I
Sbjct: 175 QGITVLISSHLLSEIQKVADRIGIINKGKLI 205
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 111 bits (280), Expect = 2e-25
Identities = 68/209 (32%), Positives = 97/209 (46%), Gaps = 6/209 (2%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99
+A+ N+ + GE + L+G SGAGKSTLL+ I G + V+ +
Sbjct: 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG----QDVSD 67
Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
+ LR + +VFQ F LLP R V NV LE +P E + RV LE+V L
Sbjct: 68 LRGRAIPYLRRK-IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGL 126
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
+ LSGG +QRV ARA IL+ DEP +LDP + + LL K
Sbjct: 127 SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN-LLKKINKA 185
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRI 248
T+V +H +R+ +E G++
Sbjct: 186 GTTVVVATHAKELVDTTRHRVIALERGKL 214
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 111 bits (278), Expect = 4e-25
Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 26/221 (11%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG A+ +L + G + L+G +GAGK+TL+R + L P G + +D P
Sbjct: 10 YGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP- 67
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLD-------IPDVERKSRVA 151
+KLR + + Q+F + P TV EFLD IP E K+RV
Sbjct: 68 -------QKLRRR-IGYLPQEFGVYPNFTV-------REFLDYIAWLKGIPSKEVKARVD 112
Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
E LE+VNL A KI LSGGM++RVG A+A IL++DEP + LDP R+R ++
Sbjct: 113 EVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL 172
Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
L L + ++ +H + + L N++A++ G+++ G
Sbjct: 173 LSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 110 bits (276), Expect = 7e-25
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 18/229 (7%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG V +L VK+GEI+ L+G +GAGK+T I GL G++L+D
Sbjct: 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD--------- 60
Query: 99 AADANVLRKLRMHT-----VSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
+ KL MH + + Q+ ++ TV N+ LE + ER+ ++ E
Sbjct: 61 ---GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL 117
Query: 154 LEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213
LE ++T K + LSGG ++RV ARA AT LL+DEPF+ +DP+ +Q +++
Sbjct: 118 LEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ-KII 176
Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
+ + ++ H++ E + +R I+ G+++ GTP+EI +
Sbjct: 177 KILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 110 bits (276), Expect = 7e-25
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 21/254 (8%)
Query: 5 AVKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLS 64
+K +V F K + + A+ + E+ KGE + ++G +
Sbjct: 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHN 62
Query: 65 GAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLP 124
GAGKSTLL+ I G+ G+V V A P
Sbjct: 63 GAGKSTLLKLIAGIYKPTSGKVKVTGK--VAPLIELGA------------------GFDP 102
Query: 125 WRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAF 184
T N+ L L + E +V E +E L + D + S GM R+ F+ A
Sbjct: 103 ELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVAT 162
Query: 185 ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIME 244
ILL+DE + D + + + L L K KTIV VSHD+ + +R +E
Sbjct: 163 HVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLE 221
Query: 245 GGRIIQCGTPQEII 258
G+I G+P+E+I
Sbjct: 222 HGQIRMEGSPEEVI 235
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 109 bits (275), Expect = 8e-25
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 16/213 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NL +K G++ L+G SGAGKSTLL + G +GE+ V+ ++ RK
Sbjct: 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG----IDLRDLSPEAWRK- 395
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI- 167
+S V Q L T+ N+ L ++ A LE V D I
Sbjct: 396 ---QISWVSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIG 451
Query: 168 ---NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
LSGG QR+ ARA + A +LL+DEP + LD + L L + +KT++
Sbjct: 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVL 509
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
++H + +A +RI +++ GR+++ GT +E+
Sbjct: 510 VITHRLEDA-ADADRIVVLDNGRLVEQGTHEEL 541
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 109 bits (274), Expect = 1e-24
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 13/214 (6%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
+G V+A+ + V+KGEI L+G +GAGK+T +R I G+ GEVL D P
Sbjct: 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG-----KPL 64
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
A + + + ++ L P V + + + E + R+ E LE +
Sbjct: 65 DIAAR-------NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE 117
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L+++A+ ++ LS G +Q+V F A +L++DEPFS LDP+ L+D + L R
Sbjct: 118 LSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
KT++ +H + L +R+ ++ GR + G
Sbjct: 178 -GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 109 bits (273), Expect = 1e-24
Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 8/218 (3%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99
G AV + V GE L+G++GAGK+T + + G GE L+ V+
Sbjct: 576 GKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDF 635
Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
+ Q AL T ++E +P + S + + L +V L
Sbjct: 636 QQV-------RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGL 688
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
+A+ ++ SGG K+R+ FA A ++L+DEP + LDP R R +++A RK
Sbjct: 689 GPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKAR-RHLWDIIARLRKN 747
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
K I+ SH + EA L R AIM G++ G+PQE+
Sbjct: 748 GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL 785
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 107 bits (270), Expect = 3e-24
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 17/215 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L++ G+ + L+G SG+GKSTL++ + GEVL+D + + LR
Sbjct: 373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN----LNLKWLRS- 427
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCKI 167
+ +V Q+ L T+ N+ G ++E ++ A H I+ L D +
Sbjct: 428 ---QIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLV 483
Query: 168 N----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
LSGG KQR+ ARA ILL+DE S+LD +Q+ L +T
Sbjct: 484 GERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA--SKGRTT 541
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+ V+H ++ R ++IA+ME G+I++ GT E+I
Sbjct: 542 IVVAHRLST-IRNADKIAVMEEGKIVEQGTHDELI 575
Score = 81.4 bits (201), Expect = 4e-16
Identities = 60/217 (27%), Positives = 111/217 (51%), Gaps = 21/217 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+L ++ G+ + L+G SG+GKST++ + G+V +D D +N L+
Sbjct: 1010 SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN--------LKW 1061
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCK 166
LR + +V Q+ L T+ N+ G E + ++ +++A H I +L + D +
Sbjct: 1062 LRKQ-IGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTR 1119
Query: 167 INM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR-KLKK 221
+ LSGG KQR+ ARA ILL+DE S+LD +Q+ AL R +
Sbjct: 1120 VGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQE---ALDRAMEGR 1176
Query: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
T + ++H ++ + + IA+++ G++++ GT E++
Sbjct: 1177 TTIVIAHRLS-TIQNADVIAVLKNGKVVEQGTHDELL 1212
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 107 bits (269), Expect = 4e-24
Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 10/216 (4%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
V AV + E ++GEI L+G +GAGK+TLLR I L G+V +D V+
Sbjct: 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG----VDTVRDP 70
Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
+ V RK + ++F + L T N++ + E K+R+AE + + L +
Sbjct: 71 SFVRRK-----IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE 125
Query: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
+ D ++ S GMKQ+V ARA IL++DEP S LD R + D + L+ + +
Sbjct: 126 YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-GR 184
Query: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
++F SH + E L +R+ ++ G ++ G+ + +
Sbjct: 185 AVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 106 bits (267), Expect = 7e-24
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 11/248 (4%)
Query: 28 YSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87
+ IK + AV +L +++G+ L L+G SG+GKSTL ++ L P +GE+
Sbjct: 286 FPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIR 344
Query: 88 VDTDKGFVNPYAADANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLD--IPD 143
D + +R LR + +VFQ +L P TV + +E GL + +
Sbjct: 345 FDGQ----DIDGLSRKEMRPLR-RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSA 399
Query: 144 VERKSRVAEHLEIVNLTKWADCKI-NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202
ER RV E LE V L + + SGG +QR+ ARA ++L+DEP S+LD
Sbjct: 400 AERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459
Query: 203 LIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
++ ++ D L LQ+K + +F+SHD+ L +R+ +M G+I++ G + + +P
Sbjct: 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQ 519
Query: 263 NCYVSEFI 270
+ Y +
Sbjct: 520 HEYTRALL 527
Score = 106 bits (266), Expect = 9e-24
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 13/245 (5%)
Query: 37 SEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP---VVRGEVLVDTDKG 93
E G V AV + +++ GE L L+G SG+GKS SI GL P + D
Sbjct: 18 QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG- 76
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEF-LDIPDVERKSRV 150
+ AA LR +R + + M+FQ+ +L P T+ + + L + ++R
Sbjct: 77 -EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARA 135
Query: 151 AEHLEIVNLTKWADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206
E LE+V + + + +++ LSGG +QRV A A A +L+ DEP ++LD ++
Sbjct: 136 LELLELVGIPE-PEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA 194
Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYV 266
++ D L LQ +L I+F++HD+ + +R+ +M+ G I++ GT + + P + Y
Sbjct: 195 QILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYT 254
Query: 267 SEFIQ 271
+ +
Sbjct: 255 RKLLA 259
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 105 bits (264), Expect = 2e-23
Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 23/247 (9%)
Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSG 65
++ +V + + K S + + E G A+ + EV +GE + L+G +G
Sbjct: 1 IELENVSKSYP--TYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNG 58
Query: 66 AGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPW 125
AGKSTLLR + G+ P G V +R S++ P
Sbjct: 59 AGKSTLLRLLAGIYPPDSGTV--------------------TVRGRVSSLLGLGGGFNPE 98
Query: 126 RTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFA 185
T N+ L L + E ++ E +E L + D + S GMK R+ FA A A
Sbjct: 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATA 158
Query: 186 TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG 245
ILL+DE + D + + Q L L ++ KT++ VSHD + RL +R ++E
Sbjct: 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEK 217
Query: 246 GRIIQCG 252
G+I G
Sbjct: 218 GKIRFDG 224
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 105 bits (263), Expect = 2e-23
Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 17/215 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ ++ GE + ++G SG+GKSTL++ + L GE+L+D ++ + LRK
Sbjct: 349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG----IDIRDISLDSLRK- 403
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCKI 167
+ +V Q L T+ N+ LG ++E ++A H I NL D +
Sbjct: 404 ---RIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV 459
Query: 168 N----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
LSGG +QR+ ARA PIL++DE S+LD +QD L L + +T
Sbjct: 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTT 517
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+ ++H ++ + +RI +++ GRI++ GT +E++
Sbjct: 518 LIIAHRLSTI-KNADRIIVLDNGRIVERGTHEELL 551
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 105 bits (264), Expect = 2e-23
Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L +K GE + ++G SG+GKSTLL+ + L GE+L+D V+ D LRK
Sbjct: 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG----VDLRDLDLESLRK- 76
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
++ V Q L T+ N+
Sbjct: 77 ---NIAYVPQDPFLFS-GTIRENI------------------------------------ 96
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
LSGG +QR+ ARA PIL++DE S+LDP + + L AL + KT++ ++H
Sbjct: 97 -LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAH 153
Query: 229 DINEAFRLGNRIAIMEGGR 247
+ R +RI +++ GR
Sbjct: 154 RL-STIRDADRIIVLDDGR 171
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 102 bits (255), Expect = 2e-22
Identities = 59/224 (26%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
V AV + +++G+ L ++G +G+GKSTL + + G+ GE+L++ Y+
Sbjct: 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFR 85
Query: 102 ANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEF-LDIPDVERKSRVAEHLEIVN 158
+ +R M+FQ +L P + + ++ L D+ +R+ ++ E L +V
Sbjct: 86 SKRIR--------MIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVG 137
Query: 159 L-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L A+ +ML+ G KQRV ARA I++ DE +SLD +R +L + +L LQ
Sbjct: 138 LLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQE 197
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
K + ++V+ I + +++ +M G +++ G+ +++ P
Sbjct: 198 KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 102 bits (255), Expect = 2e-22
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 67/215 (31%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK-GFVNP 97
+G V A+ +L V++GE+ L+G +GAGKSTL++ ++GL GE+LVD + F +P
Sbjct: 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP 69
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
A ++MV+Q
Sbjct: 70 RDARR--------AGIAMVYQ--------------------------------------- 82
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
LS G +Q V ARA A A +L++DEP ++L P + L + R
Sbjct: 83 ------------LSVGERQMVEIARALARNARLLILDEPTAALTP----AEVERLFKVIR 126
Query: 218 KLKK---TIVFVSHDINEAFRLGNRIAIMEGGRII 249
+L+ ++F+SH ++E F + +R+ ++ GR++
Sbjct: 127 RLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 101 bits (253), Expect = 3e-22
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 31/236 (13%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NL + +GE + ++G SG+GKSTLL+ + G +G + ++ V + D LR
Sbjct: 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG----VEIASLDEQALR-- 411
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK------- 161
T+S++ Q+ L T+ N+ L D D E + L+ V L K
Sbjct: 412 --ETISVLTQRVHLFS-GTLRDNLRLANP--DASDEE----LWAALQQVGLEKLLESAPD 462
Query: 162 ----WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
W LSGG ++R+ ARA AP+ L+DEP LDP+ ++ L
Sbjct: 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKL 273
KT++ V+H + R+ +RI +++ G+II+ GT E L N Q
Sbjct: 523 --GKTLLMVTHRLRGLERM-DRIIVLDNGKIIEEGTHAE--LLANNGRYKRLYQLD 573
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 101 bits (252), Expect = 4e-22
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
Y V +LEV GEI+ L+G +GAGK+T I GL G++L+D
Sbjct: 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD--------- 64
Query: 99 AADANVLRKLRMHT-----VSMVFQQFALLPWRTVARNVELGLEF--LDIPDVERKSRVA 151
D ++ KL MH + + Q+ ++ TV N+ LE D+ ERK +
Sbjct: 65 --DEDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELD 121
Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
LE ++T D K LSGG ++RV ARA A +L+DEPF+ +DP+ + +Q
Sbjct: 122 ALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ-R 180
Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
++ + ++ H++ E + +R I+ G+++ G+P+EI+ +
Sbjct: 181 IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 100 bits (251), Expect = 5e-22
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 23/205 (11%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L++ GEI+ L G +GAGK+TL + + GL G +L++ + K
Sbjct: 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN-----------GKPIKAKE 68
Query: 109 RMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164
R ++ V Q Q +V + LGL+ LD + L+ ++L +
Sbjct: 69 RRKSIGYVMQDVDYQLFT---DSVREELLLGLKELD----AGNEQAETVLKDLDLYALKE 121
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
LSGG KQR+ A A +G +L+ DEP S LD R+ + + L + K ++
Sbjct: 122 RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVI 180
Query: 225 FVSHDINEAFRLGNRIAIMEGGRII 249
++HD ++ +R+ ++ G I+
Sbjct: 181 VITHDYEFLAKVCDRVLLLANGAIV 205
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 100 bits (250), Expect = 7e-22
Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 23/220 (10%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
L+++ GE+L ++G +GAGKSTLL++++G GEV ++ P A L
Sbjct: 22 LDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIP-DVERKSRVAEH-LEIVNLTKWADCKI 167
++ S+ F P+ TV V++G + E R+A L +L+ A
Sbjct: 82 QNS-SLAF------PF-TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY 133
Query: 168 NMLSGGMKQRVGFARAFA------TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
LSGG +QRV AR A L +DEP S+LD Q L L R+L +
Sbjct: 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI----AHQHHTLRLARQLAR 189
Query: 222 ---TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
++ V HD+N A + +RI ++ GR+I G+PQ+++
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 99 bits (249), Expect = 8e-22
Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 14/300 (4%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP 97
+ + AV + E+ KGEI+ +G +GAGKST L+ + GL G+V V+ G P
Sbjct: 33 KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN---GKD-P 88
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPW-RTVARNVELGLEFLDIPDVERKSRVAEHLEI 156
+ LR + +V Q L W ++E+ +IPD E R+ EI
Sbjct: 89 FRRREEYLRSI-----GLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEI 143
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
++L + + LS G + R A A +L +DEP LD + +++ L
Sbjct: 144 LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYN 203
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPI 276
+ + T++ +H ++ L +R+ +++ G+++ GT ++ EF +L
Sbjct: 204 EERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP--YKEFSVELKQA 261
Query: 277 TALVAADVMRVCSIDDESNIVHKISRQMPLIDIIDMVADNLGKIGV-VEDDRIVGIITAI 335
+L ++ +I++ NI + +SR+ DII + + VED I +I I
Sbjct: 262 KSLSQLALLGDVTIEEGLNIKNDVSREE-SADIIAKLLAEFEVRDLTVEDPEIEDVIRRI 320
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 99 bits (249), Expect = 9e-22
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 10/213 (4%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99
V AV + VK GE+ L+G +GAGK+T LR + GL G VD P
Sbjct: 16 KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAE 75
Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
A + V L T N+E + E +R+ E + + +
Sbjct: 76 ARRRL---------GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM 126
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
+ D ++ S GM+Q+V ARA P+LL+DEP + LD + L++ + L R L
Sbjct: 127 EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-RAL 185
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
K I+F +H + E RL +R+ ++ GR++ G
Sbjct: 186 GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 97.5 bits (243), Expect = 4e-21
Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 19/216 (8%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L + G+ + L+G SG GKST++ + GE+L+D D N LR L
Sbjct: 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLD------GVDIRDLN-LRWL 75
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE-IVNLTKWADCKI 167
R + +V Q+ L T+A N+ G +VE ++ A + I++L D +
Sbjct: 76 RSQ-IGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133
Query: 168 ----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK-KT 222
+ LSGG KQR+ ARA ILL+DE S+LD +Q+ AL R +K +T
Sbjct: 134 GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE---ALDRAMKGRT 190
Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+ ++H ++ R + IA+++ G++++ GT E++
Sbjct: 191 TIVIAHRLS-TIRNADLIAVLQNGQVVEQGTHDELM 225
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 97.2 bits (242), Expect = 6e-21
Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 17/216 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N +K GE + ++G +GAGK+TL+ + +G++L+D ++ LR +
Sbjct: 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDG----IDIRDISRKSLRSM 78
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCKI 167
+ +V Q L T+ N+ LG +V ++ A H I+ L D +
Sbjct: 79 ----IGVVLQDTFLFS-GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVL 133
Query: 168 N----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
LS G +Q + ARA IL++DE S++D +Q+ L L + +T
Sbjct: 134 GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTS 191
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIIL 259
+ ++H ++ + ++I +++ G+II+ GT E++
Sbjct: 192 IIIAHRLS-TIKNADKILVLDDGKIIEEGTHDELLA 226
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 95.4 bits (237), Expect = 2e-20
Identities = 84/320 (26%), Positives = 135/320 (42%), Gaps = 38/320 (11%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV---VRGEVLVDTDKGFVNPYAADANVL 105
+ K GE+L +MG SG+GK+TLL ++ G + GE+L+ N D+
Sbjct: 50 SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL-------NGRPRDSRSF 102
Query: 106 RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL---DIPDVERKSRVAEHLEIVNLTKW 162
RK+ V Q LLP TV + + E++ RV E + + L K
Sbjct: 103 RKI----SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC 158
Query: 163 ADCKI-----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
AD I LSGG ++RV A T IL +DEP S LD +++ L L R
Sbjct: 159 ADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR 218
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII--LHPANCYVSEFIQKLNP 275
+ I + +E F L +++ ++ G ++ G+P+E++ E NP
Sbjct: 219 SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELE---NP 275
Query: 276 ITALVAADVMRVCSIDDE-------SNIVHKISRQMPLIDIIDMVADNLGKIGVVEDDRI 328
L+ D++ V S E + +++K S+ L ++ + +L VE
Sbjct: 276 ADFLL--DLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKKVEIGTS 333
Query: 329 VGIIT--AIDIVRGLSCCRR 346
T I + R L RR
Sbjct: 334 PSWWTQFKILLKRSLKNIRR 353
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 94.6 bits (235), Expect = 3e-20
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 27/220 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L +K GE++ ++G SG+GKSTL + I G VLVD + AD LR+
Sbjct: 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDG----HDLALADPAWLRR- 76
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCKI 167
V +V Q+ L R++ N+ L + + V +++A H I L + D +
Sbjct: 77 ---QVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIV 132
Query: 168 NM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK-- 221
LSGG +QR+ ARA IL+ DE S+LD + E A+ R +
Sbjct: 133 GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD------YESE-HAIMRNMHDIC 185
Query: 222 ---TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
T++ ++H ++ + +RI +ME GRI++ G+ E++
Sbjct: 186 AGRTVIIIAHRLS-TVKNADRIIVMEKGRIVEQGSHDELL 224
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 93.5 bits (233), Expect = 7e-20
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 69 STLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTV 128
STLL+ I GL G +L+D + G RK + +VFQ L P TV
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGT-------DLSSRKALRKRIGVVFQDPQLFPELTV 53
Query: 129 ARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD-CKINMLSGGMKQRVGFARAFATG 187
N+ GL D E +R E LE V L + D + LSGG KQRV ARA
Sbjct: 54 RENLFFGL-----RDKEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKK 108
Query: 188 APILLMDEPFS 198
+LL+DEP +
Sbjct: 109 PKLLLLDEPTA 119
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 93.0 bits (231), Expect = 1e-19
Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 17/215 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L++ GE + L+G SG+GKSTL+ I V G +L+D V Y L L
Sbjct: 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD--VRDYT-----LASL 74
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE-IVNLTKWADCKI 167
R + +V Q L TVA N+ G +VE +R A E I+ L + D I
Sbjct: 75 RRQ-IGLVSQD-VFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVI 132
Query: 168 N----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
LSGG +QR+ ARA PIL++DE S+LD +Q L L + +T
Sbjct: 133 GERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTT 190
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
++H ++ +RI ++E G+I++ GT +E++
Sbjct: 191 FVIAHRLS-TIENADRIVVLEDGKIVERGTHEELL 224
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 92.6 bits (230), Expect = 1e-19
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 10/213 (4%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP 97
+Y V A+ + ++KGEI+ +G +GAGK+T L+ ++GL GEV V G V P
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV---AGLV-P 85
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWR-TVARNVELGLEFLDIPDVERKSRVAEHLEI 156
+ LR++ +VF Q L W V + L D+P K R+ E E+
Sbjct: 86 WKRRKKFLRRI-----GVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
++L + D + LS G + R A A IL +DEP LD + + +++ L
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRII 249
R+ T++ SH + + L R+ +++ GR++
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 91.4 bits (227), Expect = 3e-19
Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 12/224 (5%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP 97
YG + +L++ KG I ++G +GAGKSTLL ++ L GE+ +D +
Sbjct: 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG----LEL 65
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF---LDIPDVERKSRVAEHL 154
+ + L K +S++ Q+ + TV V G F E + + E +
Sbjct: 66 TSTPSKELAK----KLSILKQENHINSRLTVRDLVGFG-RFPYSQGRLTKEDRRIINEAI 120
Query: 155 EIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
E ++L +D ++ LSGG +QR A A +L+DEP ++LD +++ L
Sbjct: 121 EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180
Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
L +L KTIV V HDIN A + I ++ G++++ G+P EII
Sbjct: 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 90.1 bits (224), Expect = 7e-19
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 39/201 (19%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+ EV+ GEI+ + GL G G++ L ++ GL P GE+ +D +P A +
Sbjct: 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA-----IR 74
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
+ V ++ L+ +VA N+ L
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIALS-------------------------------- 102
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
++LSGG +Q+V AR A +L++DEP +D + + + L K ++ +S
Sbjct: 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLIS 161
Query: 228 HDINEAFRLGNRIAIMEGGRI 248
+++E L +RI +M GRI
Sbjct: 162 SELDELLGLCDRILVMYEGRI 182
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 90.3 bits (224), Expect = 7e-19
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 17/214 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ +V GE ++G +GAGK+TLL + G P G+V + + + +L
Sbjct: 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL-----LGRRFGK-GETIFEL 104
Query: 109 RMHT--VSMVFQQFALLPWRTVARNVELGLEFLDI------PDVERKSRVAEHLEIVNLT 160
R VS + R R+V L F I E + LE++
Sbjct: 105 RKRIGLVSSELHE--RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL-QRKL 219
AD LS G ++RV ARA +L++DEP LD + R +L + L L
Sbjct: 163 HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPG 222
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGT 253
++FV+H E +++ G ++ G
Sbjct: 223 APALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 90.3 bits (224), Expect = 8e-19
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 24/220 (10%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ +LE+ +G+ + ++G +GAGKSTLL +I G G++L+D V +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVD--VTKKSVAK- 77
Query: 104 VLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLE------FLDIPDVERKSRVAEHLE 155
R + ++ VFQ P T+ N+ L + R+S E L
Sbjct: 78 -----RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA 132
Query: 156 IVN--LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP---LIRMRLQD 210
+ L +I +LSGG +Q + A ILL+DE ++LDP M L
Sbjct: 133 RLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTA 192
Query: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQ 250
+++ + K T + V+H++ +A GNR+ ++ G+I+
Sbjct: 193 KIVE---EHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 90.1 bits (224), Expect = 8e-19
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 37/208 (17%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NLEV KGE++ ++G G+GKS+LL ++ G + G V V +V+
Sbjct: 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVS------------ 72
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE------HLEIV---NL 159
Q + T+ N+ G F D ER +V + LEI+ +L
Sbjct: 73 ----------QEPWIQNGTIRENILFGKPF----DEERYEKVIKACALEPDLEILPDGDL 118
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
T+ + IN LSGG KQR+ ARA + A I L+D+P S++D + + + +
Sbjct: 119 TEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGR 247
KT + V+H + + ++I +++ GR
Sbjct: 178 NKTRILVTHQL-QLLPHADQIVVLDNGR 204
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 90.0 bits (223), Expect = 9e-19
Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 9/242 (3%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + ++ GE+L ++G SG+GK+TLL+ I+G G V G
Sbjct: 16 YGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDL 75
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWR-TVARNVELGLEFLDIPDV---ERKSRVAEHL 154
+ R+ + T Q R V+ +G + I ++ + L
Sbjct: 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWL 135
Query: 155 EIVNL-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213
E V + D SGGM+QR+ AR T ++ MDEP LD ++ RL D L
Sbjct: 136 EEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 195
Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY----VSEF 269
L R+L +V V+HD+ A L +R+ +M+ G++++ G ++ P + Y VS
Sbjct: 196 GLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSV 255
Query: 270 IQ 271
+Q
Sbjct: 256 LQ 257
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 89.6 bits (222), Expect = 1e-18
Identities = 58/224 (25%), Positives = 111/224 (49%), Gaps = 21/224 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+ ++ GE++ L+G SG+GKST+ + G +L+D +N +
Sbjct: 488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINH--------KY 539
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCK 166
LR + +V Q+ L ++ N+ GL+ ++E +++A H I N +
Sbjct: 540 LRRK-IGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTV 597
Query: 167 IN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK-K 221
+ LSGG KQR+ ARA +L++DE S+LD +Q+ AL R ++ +
Sbjct: 598 VGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE---ALDRLMQGR 654
Query: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
T++ ++H ++ R ++I +++ GR+++ GT E++ P Y
Sbjct: 655 TVLVIAHRLS-TVRHADQIVVIDKGRVVEMGTHDELLSKPNGLY 697
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 88.9 bits (220), Expect = 2e-18
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 14/188 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSING-LAP--VVRGEVLVDTDKGFVNPYAADANVL 105
N + KGEI+ LMG SG GKSTLL + G LA GE+ ++ ++L
Sbjct: 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN---------EQRLDML 72
Query: 106 RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC 165
+ + ++FQ L P +V +N+ L + R++ LE L
Sbjct: 73 PAAQRQ-IGILFQDALLFPHLSVGQNLLFALP-ATLKGNARRNAANAALERSGLDGAFHQ 130
Query: 166 KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
LSGG + RV RA LL+DEPFS LD +R + + + + R V
Sbjct: 131 DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQ 190
Query: 226 VSHDINEA 233
V+HD+ +
Sbjct: 191 VTHDLQDV 198
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 88.7 bits (220), Expect = 2e-18
Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 19/217 (8%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAA 100
+ A+ +L ++ GE + ++G G+GKSTLL+ + GL G VL+D TD ++P
Sbjct: 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP--- 73
Query: 101 DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL- 159
LR + + V Q L + T+ N+ LG D + R + +A + VN
Sbjct: 74 -----ADLRRN-IGYVPQDVTLF-YGTLRDNITLGAPLADDERILRAAELAGVTDFVNKH 126
Query: 160 TKWADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
D +I LSGG +Q V ARA PILL+DEP S++D RL++ L L
Sbjct: 127 PNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL 186
Query: 216 QRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
KT++ ++H + L +RI +M+ GRI+ G
Sbjct: 187 LG--DKTLIIITHRPS-LLDLVDRIIVMDSGRIVADG 220
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 88.8 bits (220), Expect = 2e-18
Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 44/222 (19%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N E+KKG+++ ++G G+GKS+LL +I G P + G V V+
Sbjct: 541 NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG------------------ 582
Query: 109 RMHTVSMVFQQFALLPW---RTVARNVELGLEFLDIPDVERKSRVAE------HLEIV-- 157
+V+ V QQ PW TV N+ G + D ER +V + LEI+
Sbjct: 583 ---SVAYVPQQ----PWIQNGTVRENILFGSPY----DEERYDKVIKACALKKDLEILPF 631
Query: 158 -NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
+LT+ + IN LSGG KQR+ ARA A I L+D+P S++D + + +E +
Sbjct: 632 GDLTEIGERGIN-LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL 690
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+ KT++ V+H + + ++I +++ G+I++ GT +E++
Sbjct: 691 LR-GKTVILVTHQL-QFLPHADQIIVLKDGKIVESGTYEELL 730
Score = 61.8 bits (150), Expect = 2e-10
Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ +K GE + ++G +GAGKS+L+ ++ L GE+L+D V+ + LR
Sbjct: 1160 SFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDG----VDISKIGLHDLRS- 1214
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA----- 163
+S++ Q L TV N++ E+ D + E LE L
Sbjct: 1215 ---RLSIIPQDPVLFS-GTVRFNLDPFDEYSD-------DEIWEALERCQLKDVVSSLPG 1263
Query: 164 --DCKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
D ++ S G +Q + ARA + IL++DE +S+DP +Q ++
Sbjct: 1264 GLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK---TIRE 1320
Query: 218 KLKK-TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+ K T++ ++H +N +R+ +++ GR+++ +P E++
Sbjct: 1321 EFKDCTVLTIAHRLNTVMDS-DRVLVLDAGRVVEFDSPAELL 1361
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 88.4 bits (219), Expect = 3e-18
Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 9/209 (4%)
Query: 40 GMVSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
G+ V++ +L V GE +VL G SG+GKSTLLRS+ G++LV + +V+
Sbjct: 21 GVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLV 80
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNV--ELGLEFLDIPDVERKSRVAEHLEI 156
A+ + ++R T+ V Q ++P R A +V E L +P +++ A+ L
Sbjct: 81 TAEPREVLEVRRTTIGYVSQFLRVIP-RVSALDVVAEPLLA-RGVPREVARAKAADLLTR 138
Query: 157 VNLTK--WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
+NL + W+ SGG +QRV AR F PILL+DEP +SLD R + EL+
Sbjct: 139 LNLPERLWS-LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNR-AVVVELIR 196
Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIM 243
+ +V + HD + +R+ +
Sbjct: 197 EAKARGAALVGIFHDEEVREAVADRLLDV 225
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 87.2 bits (216), Expect = 5e-18
Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 14/225 (6%)
Query: 34 DKVSE-YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK 92
+ V++ +G AV + EV GEI L+G +GAGK+T R I GL GE+ +
Sbjct: 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGP 65
Query: 93 GFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE 152
L + + + + ++ L P TV ++ E +P E + ++
Sbjct: 66 ------------LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA 113
Query: 153 HLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL 212
LE + + KI LS G +Q++ F A +L++DEPFS LDP+ L+D +
Sbjct: 114 WLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAI 173
Query: 213 LALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
L ++ TI+F SH + L +R+ +++ G+ + GT ++I
Sbjct: 174 FEL-KEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI 217
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 87.2 bits (216), Expect = 6e-18
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 17/216 (7%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK 107
+ + G+ + ++G SG+GKST+LR + V G +L+D + + LR+
Sbjct: 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDG----QDIREVTLDSLRR 75
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCK 166
+ +V Q L T+ N+ G +V ++ A+ H +I+ D
Sbjct: 76 ----AIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTI 130
Query: 167 IN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
+ LSGG KQRV ARA PILL+DE S+LD +Q L + + +T
Sbjct: 131 VGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRT 188
Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+ ++H ++ ++I +++ GRI++ GT +E++
Sbjct: 189 TIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELL 223
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 86.2 bits (213), Expect = 1e-17
Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ EV+ GEIL L+G +GAGKSTLL + G+ G + +A +L
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQ-------PLEAWSATEL 70
Query: 109 RMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC 165
H + QQ FA+ W + L PD R + + + L
Sbjct: 71 ARHRAYLSQQQTPPFAMPVWHYLT---------LHQPDKTRTELLNDVAGALALDDKLGR 121
Query: 166 KINMLSGGMKQRVGFARAFATGAP-------ILLMDEPFSSLDPLIRMRLQDELLALQRK 218
N LSGG QRV A P +LL+DEP +SLD + + D LL+ +
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-VAQQSALDRLLSALCQ 180
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
IV SHD+N R +R +++ G+++ G +E++ P
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 86.1 bits (213), Expect = 1e-17
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 16/218 (7%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK 107
+ ++ GE L ++G SG+GKSTL R + G+ P G V +D + D L +
Sbjct: 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG----ADLRQWDREQLGR 410
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCK 166
+ + Q L T+A N+ E D V +R+A H I+ L + D +
Sbjct: 411 ----HIGYLPQDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTR 465
Query: 167 IN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
I LSGG +QR+ ARA ++++DEP S+LD L +LA + T
Sbjct: 466 IGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA-KARGGT 524
Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
+V ++H + A ++I +++ GRI G +E++
Sbjct: 525 VVVIAHRPS-ALASVDKILVLQDGRIAAFGPREEVLAK 561
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 85.8 bits (212), Expect = 1e-17
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 35/226 (15%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY-AADANVLR 106
+L V+ GE + + G SG GKSTLL+ + L G +L + + R
Sbjct: 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-----DVSTLKPEAYR 76
Query: 107 KLRMHTVSMVFQQFALL----------PWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156
+ VS Q AL PW+ R + + +
Sbjct: 77 Q----QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI------ 126
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
LTK I LSGG KQR+ R ILL+DE S+LD + +++ +
Sbjct: 127 --LTK----NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
R+ +++++HD ++A R +++ ++ G G QE A
Sbjct: 181 REQNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEARQELA 223
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 85.7 bits (212), Expect = 2e-17
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 18/212 (8%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP---VVRGEVLVDTDKGFVNPYAADANV 104
+L V+ G+++ ++G SG+GK+TLL +I+G G++L +
Sbjct: 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP-----------R 74
Query: 105 LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL---DIPDVERKSRVA-EHLEIVNLT 160
V+ V Q LLP TV + D RK RV L + LT
Sbjct: 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT 134
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
+ + +SGG ++RV A +L++DEP S LD + L L L R+ +
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
I+ + ++ FRL +RI ++ G I+ G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 84.6 bits (209), Expect = 3e-17
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA-NVLRK 107
NL +K+GE++ L+G +G+GKSTL + GL GE+L+D P +A+ RK
Sbjct: 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG-----KPVSAEQLEDYRK 397
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
L S VF + L LG E + + + LE+ + T D +
Sbjct: 398 L----FSAVFSDYHLFD-------QLLGPE--GKASPQLIEKWLQRLELAHKTSLNDGRF 444
Query: 168 NM--LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
+ LS G K+R+ A IL++DE + DP R LL L ++ KTI
Sbjct: 445 SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFA 504
Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQ 250
+SHD + F +R+ M G++ +
Sbjct: 505 ISHD-DHYFIHADRLLEMRNGQLSE 528
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 84.5 bits (209), Expect = 4e-17
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 16/214 (7%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFV----NPYAADA 102
+L + GE + L+G +GAGKSTLL+ + G GEV P
Sbjct: 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE 80
Query: 103 NVLRKLRMHTVSMVFQ-------QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE 155
+ + + + +ALL EL ++ ++R E L
Sbjct: 81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL 140
Query: 156 IVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
+ D ++ LSGG ++RV ARA +LL+DEP + LD L+D L
Sbjct: 141 GLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL--- 196
Query: 216 QRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRII 249
++ T++ VSHD + I ++ G++
Sbjct: 197 -KRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229
Score = 76.4 bits (188), Expect = 1e-14
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 33/211 (15%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ + +G+ + ++G +GAGKSTLL+ + G + G V K+
Sbjct: 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV--------------------KV 381
Query: 109 RMHTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT-KWADC 165
F Q L P +TV + G F D + E V +L T + +
Sbjct: 382 GETVKIGYFDQHRDELDPDKTVLEELSEG--FPDGDEQE----VRAYLGRFGFTGEDQEK 435
Query: 166 KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
+ +LSGG K R+ A+ +LL+DEP + LD L++ L + T++
Sbjct: 436 PVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL----LDFEGTVLL 491
Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256
VSHD R+ RI ++E G ++
Sbjct: 492 VSHDRYFLDRVATRIWLVEDKVEEFEGGYED 522
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 82.1 bits (203), Expect = 2e-16
Identities = 56/202 (27%), Positives = 81/202 (40%), Gaps = 52/202 (25%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK- 107
+ ++ GE L ++G SG+GKSTL R I GL G V +D AD +
Sbjct: 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD---------GADISQWDPN 72
Query: 108 -LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166
L H V + Q L ++A N+
Sbjct: 73 ELGDH-VGYLPQDDELFS-GSIAENI---------------------------------- 96
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226
LSGG +QR+G ARA IL++DEP S LD L + AL + T + +
Sbjct: 97 ---LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVI 152
Query: 227 SHDINEAFRLGNRIAIMEGGRI 248
+H E +RI ++E GR+
Sbjct: 153 AHRP-ETLASADRILVLEDGRV 173
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 80.7 bits (199), Expect = 5e-16
Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 23/238 (9%)
Query: 29 SIKKHDKVSEYGMVSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87
SI+ D YG V+K + + KGE + ++G +G+GKST+LR + G +L
Sbjct: 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY-SGSIL 409
Query: 88 VDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD---V 144
+D + LR+ ++ +V Q L T+ N++ G D V
Sbjct: 410 IDG----QDIKEVSLESLRQ----SIGVVPQDSVLFN-DTILYNIKYGN--PSASDEEVV 458
Query: 145 ERKSRVAEHLEIVNLTKWADCKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSL 200
E R H I L + MLSGG KQRV ARAF APILL+DE S+L
Sbjct: 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSAL 518
Query: 201 DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
D + D ++ + +T++ + H ++ ++I +++ G + + GT E++
Sbjct: 519 DSETEREILDMIMDVMS--GRTVIMIVHRLDLLKDF-DKIIVLDNGTVKEYGTHSELL 573
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 78.8 bits (194), Expect = 2e-15
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ + GE L + G +GAGK+TLLR + GL GEV + + +L
Sbjct: 22 SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL--- 78
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVNLTKWADCKI 167
+ Q + T N L F + + E L V L D +
Sbjct: 79 ------YLGHQPGIKTELTALEN----LHFWQRFHGSGNAATIWEALAQVGLAGLEDLPV 128
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202
LS G ++RV AR + + AP+ ++DEPF++LD
Sbjct: 129 GQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 78.8 bits (194), Expect = 2e-15
Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP 97
+G A+ + V GE+ VL+G +GAGK+TL+ I G GEVL D D
Sbjct: 14 SFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTD---- 69
Query: 98 YAADANVLRKLRMHTVSMV-----FQQFALLPWRTVARNVELGLE--------FLDIPDV 144
L KL H ++ FQ+ + TV N+EL L
Sbjct: 70 -------LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRA 122
Query: 145 ERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
E + R+ E L + L D +LS G KQ + A +LL+DEP + +
Sbjct: 123 EERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182
Query: 205 RMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ + L +L K +I+ V HD+ + +++ ++ G ++ G+ E+
Sbjct: 183 TEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 77.7 bits (191), Expect = 4e-15
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 27/253 (10%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK---GFVN 96
G V AV + ++ + +GEI L+G SG+GKS + ++I G V + V D+ ++
Sbjct: 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICG---VNKDNWRVTADRMRFDDID 74
Query: 97 PYAADANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVE--------- 145
RKL H VSM+FQ Q L P V R + +IP
Sbjct: 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQL-----IQNIPAWTYKGRWWQRF 129
Query: 146 --RKSRVAEHLEIVNLTKWADCKI---NMLSGGMKQRVGFARAFATGAPILLMDEPFSSL 200
RK R E L V + D L+ G Q+V A A A +L+ DEP +S+
Sbjct: 130 GWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSM 189
Query: 201 DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
+P + ++ L L + TI+ +SHD+ + ++I ++ G+ ++ +E++
Sbjct: 190 EPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249
Query: 261 PANCYVSEFIQKL 273
P + Y I+ +
Sbjct: 250 PHHPYTQALIRAI 262
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 77.3 bits (190), Expect = 5e-15
Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
+ GE+ L+G SG+GKST++ + G+VL+D ++ Y + L
Sbjct: 35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP--ISQY--EHKYLHS-- 88
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGL---EFLDIPDVERKSRVAEHLEIVNLTKWADC- 165
VS+V Q+ L R++ N+ GL F + + +K+ + + +
Sbjct: 89 --KVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG 145
Query: 166 -KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
K + LSGG KQRV ARA +L++DE S+LD Q + ++T++
Sbjct: 146 EKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD--AESEQQVQQALYDWPERRTVL 203
Query: 225 FVSHDINEAFRLGNRIAIMEGGRI 248
++H ++ R ++I +++GGRI
Sbjct: 204 VIAHRLSTVER-ADQILVLDGGRI 226
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 77.5 bits (191), Expect = 5e-15
Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 44/207 (21%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV--VRGEVLVDTDKGFVNPYAADANVLR 106
+ + K GE+ +MG SGAGKSTLL ++ G V GEVL +N D R
Sbjct: 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL-------INGRPLDKRSFR 81
Query: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166
K+ + V Q L P TV + K
Sbjct: 82 KI----IGYVPQDDILHPTLTVRETLMFAA-----------------------------K 108
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226
+ LSGG ++RV A + +L +DEP S LD +++ L L +TI+
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-ADTGRTIICS 167
Query: 227 SHDI-NEAFRLGNRIAIMEGGRIIQCG 252
H +E F L +++ ++ GR+I G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 76.8 bits (189), Expect = 8e-15
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 47/204 (23%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+LE+K+GE + L+G SG+GKSTLL+ + G +GE+ +D + L K
Sbjct: 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD---------GVPVSDLEKA 72
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
+S++ Q+ L + T RN LG F
Sbjct: 73 LSSLISVLNQRPYL--FDTTLRN-NLGRRF------------------------------ 99
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
SGG +QR+ AR API+L+DEP LDP+ +L + + + KT+++++H
Sbjct: 100 --SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITH 155
Query: 229 DINEAFRLGNRIAIMEGGRIIQCG 252
+ + ++I +E G+II G
Sbjct: 156 HLTGIEHM-DKILFLENGKIIMQG 178
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 72.0 bits (177), Expect = 2e-13
Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ +K GE + ++G +G+GKS+LL ++ L + G +L+D V+ L L
Sbjct: 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG----VDISKIG---LHDL 76
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
R +S++ Q L T+ N LD + + LE V L ++ +
Sbjct: 77 RSR-ISIIPQDPVLFS-GTIRSN-------LDPFGEYSDEELWQALERVGLKEFVESLPG 127
Query: 169 ML-----------SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L S G +Q + ARA + IL++DE +S+DP +Q ++
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK---TIRE 184
Query: 218 KLKK-TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTP 254
K T++ ++H ++ +RI +++ GR+++ +P
Sbjct: 185 AFKDCTVLTIAHRLDTIIDS-DRILVLDKGRVVEFDSP 221
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 71.9 bits (176), Expect = 2e-13
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+ + GE L + G +G+GK+TLLR + GL+P + G VL++ F A
Sbjct: 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG----- 74
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
+ + P +V L F +V E L V L + D +
Sbjct: 75 --LLYL-------GHAPGIKTTLSVLENLRFWH--ADHSDEQVEEALARVGLNGFEDRPV 123
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
LS G ++RV AR +G P+ ++DEP ++LD
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 70.3 bits (172), Expect = 6e-13
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 38/191 (19%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLR 106
+ N EV+ GE L++ G SGAGK++LLR++ GL P G + AD+ +L
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS----------MPADSALL- 459
Query: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166
Q LP T+ + D D E + L V L A+ +
Sbjct: 460 ---------FLPQRPYLPQGTLREALCYPNAAPDFSDAE----LVAVLHKVGLGDLAE-R 505
Query: 167 IN-------MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL-ALQRK 218
++ +LSGG +QR+ FAR + +DE S+LD +D L L+ +
Sbjct: 506 LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE----ETEDRLYQLLKEE 561
Query: 219 LKK-TIVFVSH 228
L T++ V H
Sbjct: 562 LPDATVISVGH 572
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 69.6 bits (170), Expect = 1e-12
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKG-----FV--NPYAAD 101
+LEV G+ L++ G SG GK++LLR + GL P G++ TD G F+ PY
Sbjct: 455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTL 514
Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
LR +++ A A + ++ L L+ + L+
Sbjct: 515 GT-LRD------QVIYPLKAEDMDSKSASDEDI-LRILENVQLGHLLEREGGLDQQVDWD 566
Query: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
W D +LS G +QR+ FAR F ++DE S++ ++ L R++
Sbjct: 567 WMD----VLSPGEQQRLAFARLFYHKPKFAILDECTSAVT----EDVEGALYRKCREMGI 618
Query: 222 TIVFVSH 228
T + V H
Sbjct: 619 TFISVGH 625
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 68.9 bits (168), Expect = 2e-12
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 29/230 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ V+ G+ + L+G SGAGKST++R + V G + +D + +
Sbjct: 558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG---------------QDI 602
Query: 109 RMHTVSMVFQQFALLPWRTV------ARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTK 161
R T S + ++P TV N+ +V ++ A+ H I+ +
Sbjct: 603 RNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE 662
Query: 162 WADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
+ ++ LSGG KQRV AR I+L+DE S+LD +Q L L
Sbjct: 663 GYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA 722
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVS 267
+T + V+H ++ + I ++ GRI++ G +E++ Y
Sbjct: 723 --NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKRDGGAYAD 769
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 68.6 bits (168), Expect = 2e-12
Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 62/188 (32%)
Query: 45 VIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKG--FV--NPYAA 100
+ + E+K G+ L++ G SG GKS+L R++ GL P G + + + F+ PY
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP 76
Query: 101 DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT 160
+ +L + PW V
Sbjct: 77 LGTLREQL-------------IYPWDDV-------------------------------- 91
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
LSGG +QR+ FAR + +DE S+LD +D L L ++L
Sbjct: 92 ---------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDE----ESEDRLYQLLKELG 138
Query: 221 KTIVFVSH 228
T++ V H
Sbjct: 139 ITVISVGH 146
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 65.3 bits (159), Expect = 2e-11
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 28/219 (12%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSING--LAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
K G + LMG SGAGK+TLL + G + G++L+ GF A V
Sbjct: 814 FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILIS---GFPKDQETFARV----- 865
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEF---LDIPDVERKSRVAEHLEIVNLTKWADCK 166
V QQ P TV ++ ++ D E+ V E +E++ L ++AD
Sbjct: 866 ---SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADAL 922
Query: 167 INM----LSGGMKQRVGFA-RAFATGAPILLMDEPFSSLD---PLIRMRLQDELLALQRK 218
+ + LS ++R+ A + IL +DEP S LD I MR +L +
Sbjct: 923 VGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT 982
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIM-EGGRIIQCGTPQE 256
+ TI S DI EAF + + ++ GG+ + G E
Sbjct: 983 ILCTIHQPSIDIFEAF---DELLLLKRGGQTVYFGPLGE 1018
Score = 61.8 bits (150), Expect = 3e-10
Identities = 57/291 (19%), Positives = 111/291 (38%), Gaps = 32/291 (10%)
Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSG 65
+ D+ +G T I SI + + + + + +K GE+ +++G G
Sbjct: 92 ALGVEADVTYGPTLVNILSNPLESILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPG 151
Query: 66 AGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR-MHTVSMVFQQFALLP 124
+GK+TLL+++ G +D + + L++ TV+ +Q P
Sbjct: 152 SGKTTLLKALAGK---------LDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFP 202
Query: 125 WRTVARNVELGLEF----LDIPDVERKSRVA----EHLEIVNLTKWADCKIN-----MLS 171
TV ++ +V R+ ++A L+I+ L AD + +S
Sbjct: 203 ELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVS 262
Query: 172 GGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT-IVFVSHDI 230
GG ++RV A IL DE LD ++ L L T +V +
Sbjct: 263 GGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPS 322
Query: 231 NEAFRLGNRIAIMEGGRIIQCGTPQEIILH--------PANCYVSEFIQKL 273
E + L + + ++ G I G E++ + P ++F+ ++
Sbjct: 323 PEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEV 373
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 64.3 bits (156), Expect = 4e-11
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 26/195 (13%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N+ + G++ +++G G GKS+LL +I G + G+V N R
Sbjct: 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSN----KNESEPSFEATRSR 76
Query: 109 RMHTVSMVFQQFALLPW---RTVARNVELGLEFLDIPDVERKSRVAEH---------LEI 156
++V+ Q+ PW TV N+ G F + +R V + L
Sbjct: 77 NRYSVAYAAQK----PWLLNATVEENITFGSPF----NKQRYKAVTDACSLQPDIDLLPF 128
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD-PLIRMRLQDELLAL 215
+ T+ + IN LSGG +QR+ ARA I+ +D+PFS+LD L +Q+ +L
Sbjct: 129 GDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF 187
Query: 216 QRKLKKTIVFVSHDI 230
+ K+T+V V+H +
Sbjct: 188 LQDDKRTLVLVTHKL 202
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 63.3 bits (154), Expect = 9e-11
Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 29/241 (12%)
Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSG 65
V+FR +I F E + K ++ D YG ++ E+ GE++ ++G +G
Sbjct: 319 VRFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTYGDFKLEVEEG-EIYDGEVIGILGPNG 377
Query: 66 AGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY-AADANVLRKLRMHTVSMVFQQFALLP 124
GK+T ++ + G+ G D + Y + D + TV +
Sbjct: 378 IGKTTFVKLLAGVIKPDEGSE-EDLKVSYKPQYISPDYD-------GTVEDLL------- 422
Query: 125 WRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAF 184
R+ R+ K+ + + L + +L + ++ LSGG QRV A A
Sbjct: 423 -RSAIRS--------AFGSSYFKTEIVKPLNLEDLL---ERPVDELSGGELQRVAIAAAL 470
Query: 185 ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIME 244
+ A + L+DEP + LD R+ + + +KT + V HDI + +R+ + E
Sbjct: 471 SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530
Query: 245 G 245
G
Sbjct: 531 G 531
Score = 53.7 bits (129), Expect = 7e-08
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 12/184 (6%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA---NVLRKL 108
+ G+++ ++G +G GKST L+ + G G V N +KL
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 109 RMHTVSMVF--QQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166
+ V Q L+P + V V L+ V+ + + E +E + L D
Sbjct: 157 YEGELRAVHKPQYVDLIP-KVVKGKVGELLK-----KVDERGKFDEVVERLGLENVLDRD 210
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226
++ LSGG QRV A A A + DEP S LD R+ + L K IV V
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIV-V 269
Query: 227 SHDI 230
HD+
Sbjct: 270 EHDL 273
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 63.0 bits (153), Expect = 1e-10
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 17/217 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ + G+ + ++G SGAGKST+LR + V G + +D + + LR+
Sbjct: 283 SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID--GQDIRDVTQQS--LRR- 337
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA-EHLEIVNLTKWADCKI 167
+ +V Q L T+A N++ G +V + A H I +L + D +
Sbjct: 338 ---AIGIVPQDTVLFN-DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393
Query: 168 NM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
LSGG KQRV AR PIL++DE S+LD +Q L + +T
Sbjct: 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTT 451
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
+ ++H ++ + I +++ GRI++ GT +E++
Sbjct: 452 LVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 62.3 bits (151), Expect = 2e-10
Identities = 54/198 (27%), Positives = 80/198 (40%), Gaps = 35/198 (17%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLR 106
K N + + L+G +GAGKSTLL+ I G G V + N L
Sbjct: 408 KLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456
Query: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFL--DIPDVERKSRVAEHLEIVNLTKWA- 163
+ H L ++ LEF+ PD + + L LT A
Sbjct: 457 RYNQH------LAEQLDLDKSS-------LEFMMPKFPDEKELEEMRSILGRFGLTGDAQ 503
Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
++ LS G ++RV FAR +LL+DEP + LD L + + + +
Sbjct: 504 VVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAI----NEFPGGV 559
Query: 224 VFVSHDINEAFRLGNRIA 241
V VSHD FRL +++A
Sbjct: 560 VLVSHD----FRLISQVA 573
Score = 56.1 bits (135), Expect = 1e-08
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
LE+ +G L+G +G+GKST LR+I G P+ + ++ ++ +
Sbjct: 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIE---PSEKQAVQAV 152
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERK---------SRVAEHL-EIVN 158
M T + L A + + E ++ ER ++ A+ L +
Sbjct: 153 VMETDHERKRLEYLAEDLAQACDDKEKDELDEL--YERLDEMDNDTFEAKAAKILHGLGF 210
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L++ D K+ LSGG + R ARA +LL+DEP + LD + L++ L +
Sbjct: 211 LSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEY---LAKY 267
Query: 219 LKKTIVFVSHD 229
+ +V VSH
Sbjct: 268 DRIILVIVSHS 278
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 61.5 bits (149), Expect = 3e-10
Identities = 67/256 (26%), Positives = 104/256 (40%), Gaps = 32/256 (12%)
Query: 7 KFRDVDIVF--GETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLS 64
+FR +VF + S++ R+ RYS K K G IK E EI+V++G +
Sbjct: 320 RFRPECLVFLASDLSSEDRRTGRYSYPKMKK--TVGDFCLCIKVG-EFSDSEIIVMLGEN 376
Query: 65 GAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLP 124
G GK+T +R + G G + V + + R TV +
Sbjct: 377 GTGKTTFIRMLAGRLKPDEGGEIP------VLNVSYKPQKISPKREGTVRQLL------- 423
Query: 125 WRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAF 184
T R+ + +F + V + L+I N+ D ++ LSGG QRV A
Sbjct: 424 -HTKIRDAYMHPQF--------VNDVMKPLQIENII---DQEVQGLSGGELQRVALALCL 471
Query: 185 ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIME 244
A + L+DEP + LD R+ + KKT V HD A L +R+ + E
Sbjct: 472 GKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531
Query: 245 G--GRIIQCGTPQEII 258
G +PQ ++
Sbjct: 532 GQPSVNTVANSPQSLL 547
Score = 42.6 bits (100), Expect = 2e-04
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA---NVLRKLR 109
+ G++L L+G +G GKST L+ + G G D + Y + N K+
Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157
Query: 110 MHTVSMVF--QQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
+ + Q +P R V V L+ D + + K V + L++ NL D ++
Sbjct: 158 EDNLKAIIKPQYVDQIP-RAVKGTVGSLLDRKD--ERDNKEEVCDQLDLNNLL---DREV 211
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG QR A A + + DEP S LD R++ + +L + IV V
Sbjct: 212 EQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIV-VE 270
Query: 228 HDI 230
HD+
Sbjct: 271 HDL 273
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 60.4 bits (146), Expect = 6e-10
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 22/183 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NLE+K G+++ ++G SGAGK+TLLR I G RGE D G V + L
Sbjct: 403 NLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ-KGRGEEKYRPDSGKVEVPKNTVSALIPG 461
Query: 109 RMH---TVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC 165
+ + + VE+ L + D R
Sbjct: 462 EYEPEFGEVTILEHLRSKT-GDLNAAVEI-LNRAGLSDAVLYRR---------------- 503
Query: 166 KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
K + LS G K+R A+ A +LL+DE + LD L +R+ ++ L R+ T++
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 226 VSH 228
V+H
Sbjct: 564 VTH 566
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 59.8 bits (145), Expect = 1e-09
Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 44/206 (21%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPV---VRGEVLVDTDKGFVNPYAADANVLRKL 108
VK GE+++++G G+G STLL+++ V G++ + PY A
Sbjct: 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG-----IPYKEFAEKYP-- 82
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
+ V ++ P TV ++ L CK N
Sbjct: 83 --GEIIYVSEEDVHFPTLTVRETLDFALR---------------------------CKGN 113
Query: 169 M----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
+SGG ++RV A A + A +L D LD + + + + LK T
Sbjct: 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTF 173
Query: 225 F-VSHDINEAFRLGNRIAIMEGGRII 249
+ +E + L +++ ++ GR I
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQI 199
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 58.6 bits (142), Expect = 3e-09
Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 45/216 (20%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLA--PVVRGEVLVDTDKGFVNPYAADANVLR 106
NL +KKGE+ LMG +G+GKSTL ++I G V GE+L + D
Sbjct: 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED------ITDLPPEE 73
Query: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166
+ R+ + + FQ +IP V + A+ L VN
Sbjct: 74 RARL-GIFLAFQ------------------YPPEIPGV----KNADFLRYVNEG------ 104
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226
SGG K+R + + ++DEP S LD + +RL E++ R+ K+++ +
Sbjct: 105 ---FSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVAEVINKLREEGKSVLII 160
Query: 227 SH--DINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
+H + + + +R+ ++ GRI++ G +E+ L
Sbjct: 161 THYQRLLDYIK-PDRVHVLYDGRIVKSG-DKELALE 194
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 58.0 bits (140), Expect = 3e-09
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 24/195 (12%)
Query: 51 EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRM 110
+ + E++ ++G +G GK+T ++ + G+ G++ ++ D P A+ +R
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVR- 79
Query: 111 HTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINML 170
LL ++ ++ F K+ +A+ L+I + D ++ L
Sbjct: 80 ----------DLL--SSITKDFYTHPYF--------KTEIAKPLQIEQIL---DREVPEL 116
Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDI 230
SGG QRV A + A I L+DEP + LD R+ + +KT V HDI
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176
Query: 231 NEAFRLGNRIAIMEG 245
L +R+ + EG
Sbjct: 177 IMIDYLADRLIVFEG 191
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 57.4 bits (139), Expect = 6e-09
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229
LSGG K R+ A+ +LL+DEP + LD L++ L ++ T++ VSHD
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL----KEYPGTVILVSHD 126
Query: 230 INEAFRLGNRIAIMEGGR 247
++ +I +E G+
Sbjct: 127 RYFLDQVATKIIELEDGK 144
Score = 40.1 bits (94), Expect = 9e-04
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
+L + G+ + L+G +GAGKSTLL+ I G G V
Sbjct: 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 56.7 bits (137), Expect = 1e-08
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 30/232 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAP--VVRGEVLVDTDKGFVNPYAADANVLR 106
NL VK+GE+ +MG +G+GKSTL +I G V GE+L D + + +
Sbjct: 24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED------ILELSPDE 77
Query: 107 KLRMHTVSMVFQQFALLP------WRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT 160
+ R + + FQ +P + A N G E + E E++ L
Sbjct: 78 RARA-GIFLAFQYPVEIPGVTNSDFLRAAMNARRG---ARGILPEFIKELKEKAELLGLD 133
Query: 161 -KWADCKINM-LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
++ + +N SGG K+R + + ++DEP S LD + +++ E + R+
Sbjct: 134 EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD-IDALKIVAEGINALRE 192
Query: 219 LKKTIVFVSHDINEAFRLGN-----RIAIMEGGRIIQCGTPQEIILHPANCY 265
+ ++ ++H + RL + ++ ++ GRI++ G P+ Y
Sbjct: 193 EGRGVLIITH--YQ--RLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEKGY 240
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 53.8 bits (129), Expect = 7e-08
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 41/227 (18%)
Query: 42 VSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAA 100
+ V+K NL+++KGE+L + G +G+GK++LL I G G++
Sbjct: 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-------------- 94
Query: 101 DANVLRKLRMHTVSMVF-QQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV-N 158
H+ + F QF+ + T+ N+ G+ + D R V + ++ +
Sbjct: 95 ---------KHSGRISFSSQFSWIMPGTIKENIIFGVSY----DEYRYKSVVKACQLEED 141
Query: 159 LTKWADCKINM--------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210
+TK+ + K N LSGG + R+ ARA A + L+D PF LD + +
Sbjct: 142 ITKFPE-KDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFE 200
Query: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ + KT + V+ + E + ++I I+ G GT E+
Sbjct: 201 SCVC-KLMANKTRILVTSKM-EHLKKADKILILHEGSSYFYGTFSEL 245
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 52.7 bits (126), Expect = 1e-07
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 9/210 (4%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NL++ G +L+G +GAGK+TLL+ ++G V G V V F + + L L
Sbjct: 34 NLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYL 93
Query: 109 RMHTVSMV-FQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
V L A ++ G+ D ER+ ++ + L+I +L +W ++
Sbjct: 94 GGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDP---ERREKLIDILDI-DL-RW---RM 145
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
+ +S G ++RV +LL+DE LD L R L + L + TIV+ +
Sbjct: 146 HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYAT 205
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
H + + ++ G+++ Q+I
Sbjct: 206 HIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 52.2 bits (125), Expect = 2e-07
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 30/185 (16%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSI-NGLAPVVRGEVLVDTDKGFVNPYAADANVL 105
KANL + +G L+G +G GKSTLLR+I NG E V D +++
Sbjct: 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTE 157
Query: 106 RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC 165
R + ++ LL GL +I + L + T
Sbjct: 158 RL------DFLAEEKELL----------AGLTLEEI--------YDKILAGLGFTPEMQL 193
Query: 166 K-INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
+ LSGG + R+ ARA +LL+DEP + LD + L++ L + K T +
Sbjct: 194 QPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYL----QTWKITSL 249
Query: 225 FVSHD 229
VSHD
Sbjct: 250 IVSHD 254
Score = 43.4 bits (102), Expect = 9e-05
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 152 EHLEIVNLT-KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210
HL L+ + A I LSGG K RV FA +L++DEP + LD +D
Sbjct: 464 RHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD-------RD 516
Query: 211 ELLALQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRI 248
L AL + LK +V VSHD L + ++E G++
Sbjct: 517 SLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKV 557
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 51.8 bits (124), Expect = 2e-07
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 14/218 (6%)
Query: 34 DKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDK 92
+ V YG S + ++G++L L+G +G GKST L+ + G L P +
Sbjct: 5 EPVHRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWD 64
Query: 93 GFVNPYAADA--NVLRKLRMHTVSMVF--QQFALLPWRTVARNVELGLEFLDIPDVERKS 148
++ + N KL V ++ Q L+P + V V L+ D + +
Sbjct: 65 EILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIP-KAVKGKVGELLKKKD--ERGKLD 121
Query: 149 RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
+ + LE+ ++ D I+ LSGG QRV A A A A DEP S LD I+ RL
Sbjct: 122 ELVDQLELRHVL---DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD--IKQRL 176
Query: 209 QDELLALQR-KLKKTIVFVSHDINEAFRLGNRIAIMEG 245
L + + ++ V HD+ L + I + G
Sbjct: 177 NAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 51.3 bits (123), Expect = 4e-07
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 56/236 (23%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTL----------LRSINGLAPVVR------GEVLVDTDK 92
++++ + +++V+ G+SG+GKS+L R + L+ R + VD+ +
Sbjct: 15 DVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE 74
Query: 93 GFVNPYAADANVLRK---LRMHTVSMVFQQFALLPWRTVARN-----VELGLEFLDIPDV 144
G A D + + TV+ ++ LL R R V++GL +L +
Sbjct: 75 GLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTL--- 131
Query: 145 ERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATG--APILLMDEPFSSLDP 202
SR A LSGG QR+ A +G + ++DEP L P
Sbjct: 132 ---SRSA----------------PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHP 172
Query: 203 LIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRI------AIMEGGRIIQCG 252
RL + L L R L T++ V HD + R + + A + GG I+ G
Sbjct: 173 RDNDRLIETLKRL-RDLGNTVLVVEHD-EDTIRAADHVIDIGPGAGVHGGEIVAQG 226
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 48.5 bits (115), Expect = 3e-06
Identities = 29/76 (38%), Positives = 37/76 (48%)
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229
LSGG QRV A A A L DEP + LD R+ + L + KKT + V HD
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 230 INEAFRLGNRIAIMEG 245
+ L +RI + EG
Sbjct: 132 LAVLDYLSDRIHVFEG 147
Score = 33.0 bits (75), Expect = 0.11
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSING 77
D V YG+ +++ VK+GE++ ++G +G GK+T ++ + G
Sbjct: 1 QLYPDCVKRYGVFFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAG 47
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 46.0 bits (109), Expect = 1e-05
Identities = 53/200 (26%), Positives = 75/200 (37%), Gaps = 49/200 (24%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSING--LAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
VK G + LMG SGAGK+TLL + G A V+ GE+L++ D N R
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING-------RPLDKNFQR--- 79
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINM 169
+ V QQ P TV L F +
Sbjct: 80 --STGYVEQQDVHSPNLTV----REALRF-------------------------SALLRG 108
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLD---PLIRMRLQDELLALQRKLKKTIVFV 226
LS ++R+ A IL +DEP S LD +R +L + + TI
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168
Query: 227 SHDINEAFRLGNRIAIMEGG 246
S I E F +R+ +++ G
Sbjct: 169 SASIFEKF---DRLLLLKRG 185
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 46.1 bits (109), Expect = 1e-05
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 45 VIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDT-DKGFV---NPYAA 100
V K +++ G L++ G +G GKS+L R + GL PV G + + + F PY +
Sbjct: 498 VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMS 557
Query: 101 DANVLRKLRMHTV-SMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
LR + +Q R + +L LDI +E + + V
Sbjct: 558 ----GGTLRDQIIYPDSSEQMK----RKGYTDQDL-EAILDIVHLEHILQREGGWDAVR- 607
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202
W D +LSGG KQR+G AR F L+DE S++
Sbjct: 608 -DWKD----VLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI 645
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 45.1 bits (106), Expect = 3e-05
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 16/194 (8%)
Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV---------RGEVLVDTDKGFVN 96
+ A+L + G L+G +G GK+TLL+ I A + EV+ D+
Sbjct: 281 VNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340
Query: 97 PYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156
AD L L M Q R E+ E I ++R L
Sbjct: 341 VLKADKKRLALLEEEAKLM--SQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG 398
Query: 157 VNLTK-WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
+ +K + SGG + RV ARA +L++DEP + LD + L + L
Sbjct: 399 LGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYL--- 455
Query: 216 QRKLKKTIVFVSHD 229
+ KKT++ VSHD
Sbjct: 456 -QGWKKTLLIVSHD 468
Score = 41.2 bits (96), Expect = 4e-04
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 33/187 (17%)
Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD--TDKGFVNPYAADAN 103
K + + + ++G +G GKSTLL+ + G GE+ + G+ + +A +A
Sbjct: 604 KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA- 662
Query: 104 VLRKLRMHTVSMVFQQFAL-LPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162
L + + Q LP++ + +LG +A H +
Sbjct: 663 ----LNGEETPVEYLQRKFNLPYQEARK--QLG-----------TFGLASHAHTI----- 700
Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
KI LSGG K RV A G +L++DEP ++LD + D L +
Sbjct: 701 ---KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD----IESIDALAEAINEYNGG 753
Query: 223 IVFVSHD 229
++ VSHD
Sbjct: 754 VIMVSHD 760
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 44.6 bits (105), Expect = 4e-05
Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 46/251 (18%)
Query: 30 IKKHDKVSEY-GMVSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87
IK HD Y + V+K +K G+ + + G +G+GKS+L + + + G+++
Sbjct: 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79
Query: 88 VDTDKGFVNPYAADANVLRKLRMHTV----SMVFQQFALLPWRTVARNVELGLEFLDIPD 143
+D + KL +HT+ S++ Q L + ++ L D
Sbjct: 80 IDGID------------ISKLPLHTLRSRLSIILQDPILF-----SGSIRFNL------D 116
Query: 144 VERK---SRVAEHLEIVNLTKWA-------DCKINM----LSGGMKQRVGFARAFATGAP 189
E K R+ E LEI L D + S G +Q ARAF +
Sbjct: 117 PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176
Query: 190 ILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRII 249
IL+MDE +S+D LQ + + +T+V ++H ++ + + ++ G ++
Sbjct: 177 ILIMDEATASIDMATENILQK--VVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILV 233
Query: 250 QCGTPQEIILH 260
+C TP+ ++
Sbjct: 234 ECDTPENLLAQ 244
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 43.7 bits (103), Expect = 8e-05
Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 51/190 (26%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
V + ++ + ++V+ G+SG+GKSTL+ +G A
Sbjct: 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVN------------------EGLYASGKAR 49
Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
+ Q L +++GL +L +
Sbjct: 50 LISFLPKFSRNKLIFIDQLQFL--------IDVGLGYLTL-------------------- 81
Query: 162 WADCKINMLSGGMKQRVGFARAFATGAP--ILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
K++ LSGG QRV A + P + ++DEP + L +L + + L L
Sbjct: 82 --GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDL 138
Query: 220 KKTIVFVSHD 229
T++ + H+
Sbjct: 139 GNTVILIEHN 148
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 43.7 bits (103), Expect = 8e-05
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 28/205 (13%)
Query: 51 EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRKLR 109
+VK GE + ++G +GAGKSTL+ ++ G++ +D D + L LR
Sbjct: 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP--------LEDLR 81
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINM 169
+++++ Q L T+ N++ E+ D EI + ++ +N
Sbjct: 82 -SSLTIIPQDPTLFS-GTIRSNLDPFDEYSDE-------------EIYGALRVSEGGLN- 125
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229
LS G +Q + ARA +L++DE +S+D +Q + TI+ ++H
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAHR 183
Query: 230 INEAFRLGNRIAIMEGGRIIQCGTP 254
+ ++I +M+ G + + P
Sbjct: 184 LRTIIDY-DKILVMDAGEVKEYDHP 207
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 43.6 bits (103), Expect = 9e-05
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 170 LSGGMKQRVGFARAFATGAPILL--MDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG QR+ A +G +L +DEP L RL + L L R L T++ V
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVE 540
Query: 228 HDINEAFRLGNRI------AIMEGGRIIQCGTPQEIILHP 261
HD + R + I A GG I+ GTP+E++ +P
Sbjct: 541 HD-EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579
Score = 40.5 bits (95), Expect = 7e-04
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 132 VELGLEFL-DIPDVERKSRVAEH--LEIVNLTKWADCKINMLSGGMKQRVGFARAF---A 185
VE LEF IP + RK + L + L + A LSGG QRV A+ +
Sbjct: 786 VEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPA----TTLSGGEAQRVKLAKELSKRS 841
Query: 186 TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIM-- 243
TG + ++DEP + L +L + L L T++ + H++ + + + I +
Sbjct: 842 TGKTLYILDEPTTGLHFDDIKKLLEVLHRL-VDKGNTVIVIEHNL-DVIKTADWIIDLGP 899
Query: 244 ----EGGRIIQCGTPQEIILHPANCYVSEFIQKL 273
GG I+ GTP+E+ A+ Y ++++K
Sbjct: 900 EGGDGGGEIVASGTPEEVAKVKAS-YTGKYLKKY 932
Score = 32.5 bits (74), Expect = 0.19
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTL 71
+LE+ + +++V+ GLSG+GKS+L
Sbjct: 20 DLEIPRNKLVVITGLSGSGKSSL 42
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 43.1 bits (101), Expect = 1e-04
Identities = 53/229 (23%), Positives = 107/229 (46%), Gaps = 47/229 (20%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ + G+ + L+G +G+GKSTLL + L G++ +D + ++ L+K
Sbjct: 24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGDIQIDG-------VSWNSVPLQKW 75
Query: 109 RMHTVSMVFQQFALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162
R + F ++P + T +N++ ++ D E +VAE + + ++ +
Sbjct: 76 R--------KAFGVIPQKVFIFSGTFRKNLDPYGKWSD----EEIWKVAEEVGLKSVIEQ 123
Query: 163 ADCKIN--------MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
+++ +LS G KQ + AR+ + A ILL+DEP + LDP+
Sbjct: 124 FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT-------YQV 176
Query: 215 LQRKLKK-----TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+++ LK+ T++ H I EA R ++E ++ Q + Q+++
Sbjct: 177 IRKTLKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVRQYDSIQKLL 224
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 40.4 bits (94), Expect = 7e-04
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 170 LSGGMKQRVGFARAFA--------TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
LSGG + A A +L +DEPF +LD +L + L L +
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG-R 874
Query: 222 TIVFVSHD--INEAFRLGNRIAIMEGGRIIQC 251
I+ +SH + E + R+ G ++
Sbjct: 875 QIIIISHVEELKERADVRIRVKKDGGRSRVEV 906
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 40.2 bits (94), Expect = 9e-04
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKG 93
KG+ VL+G SG GKSTL+ ++ + GE+ +G
Sbjct: 160 KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRG 199
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 39.9 bits (94), Expect = 0.001
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKG 93
+K L KG+ VL G SG GKSTLL ++ + GE+ +G
Sbjct: 29 LKPLL---KGKTSVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRG 73
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 39.5 bits (92), Expect = 0.001
Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 32/207 (15%)
Query: 51 EVKKGEILVLMGLSGAGKSTLLRSIN-GLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
+ + ++ G +GAGKST+L +I L + + P A V
Sbjct: 24 GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEV----- 78
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINM 169
S FQ L + GL++ D + + E ++
Sbjct: 79 ----SFTFQ----LGGKKYRVERSRGLDY----DQFTRIVLLPQGEFDRFLARP---VST 123
Query: 170 LSGGMKQRVGFARAFA--------TGAPI--LLMDEPFSSLDPLIRMRLQDELLALQRKL 219
LSGG + A A GA + L +DE F +LDP + L L R
Sbjct: 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTE 182
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGG 246
+ + +SH R+ R+ +++
Sbjct: 183 NRMVGVISHVEELKERIPQRLEVIKTP 209
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKG 93
++ E+ G+I VL+G SG GKSTL+ ++ GE+ +G
Sbjct: 155 LEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRG 202
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 38.1 bits (89), Expect = 0.003
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSING 77
NL + KGEI +MG +G+GKSTL + I G
Sbjct: 27 NLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 37.2 bits (86), Expect = 0.007
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 170 LSGGMKQRVGFARAFA----TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
LSGG K+ A A P+ ++DE LDP L + + ++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAE-AILEHLVKGAQVIV 136
Query: 226 VSHD 229
++H
Sbjct: 137 ITHL 140
Score = 29.2 bits (65), Expect = 2.0
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTV 113
+G + ++ G +G+GKST+L +I GLA A + +
Sbjct: 20 EGSLTIITGPNGSGKSTILDAI-GLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQL 78
Query: 114 S 114
S
Sbjct: 79 S 79
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 35.9 bits (83), Expect = 0.016
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 170 LSGGMKQ------RVGFARAFATGAPILLMDEPFSSLDP-LIRMRLQDELLALQRKLKKT 222
SGG K R+ A F + IL +DEP ++LD I L + + + +
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 223 IVFVSHD 229
++ ++HD
Sbjct: 176 LIVITHD 182
>gnl|CDD|73120 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 135
Score = 35.7 bits (82), Expect = 0.018
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 267 SEFIQKLNPITALVAADVMR--VCSIDDESNIVHKISRQMPLIDIIDMVADNLGKIGVVE 324
+ + LVA D+M + ++ ++V M+ N+ + VV+
Sbjct: 69 GQKRYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAK---------LMLEANISGLPVVD 119
Query: 325 DDRIVGIITAIDIVRG 340
+D IVG+IT DI R
Sbjct: 120 NDNIVGVITKTDICRE 135
>gnl|CDD|73095 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains associated with an upstream DHH domain which
performs a phosphoesterase function and a downstream
polyA polymerase domain. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 110
Score = 35.1 bits (81), Expect = 0.031
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 297 VHKISRQMPLIDIID-MVADNLGKIGVVEDDRIVGIITAIDIVR 339
V + PL ++ + MV ++G++ VVED R+VGI+T D++R
Sbjct: 66 VVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR 109
>gnl|CDD|73132 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 143
Score = 34.4 bits (79), Expect = 0.050
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 253 TPQEIILHPANCYVS--EFIQKLNPITALVAADVMRVCSIDDESNIVHKISRQMPLIDII 310
+P E+I P +++ E + L + D+M + V IS + D
Sbjct: 61 SPLELIELPLREFINWEETKRALTDAGKMKVRDIM--------TKKVITISPDASIEDAA 112
Query: 311 D-MVADNLGKIGVVEDDRIVGIITAIDIVRG 340
+ MV + ++ VVED R+VGI+T DI+ G
Sbjct: 113 ELMVRHKIKRLPVVEDGRLVGIVTRGDIIEG 143
Score = 27.9 bits (62), Expect = 4.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 316 NLGKIGVVEDDRIVGIITAIDIVRGLS 342
+ V++ ++VGI++ DI++ L
Sbjct: 23 KISGAPVLDGGKLVGIVSESDILKLLV 49
>gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 34.1 bits (78), Expect = 0.058
Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 36/181 (19%)
Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTV 113
+ I + G +G+GKSTLL +I GF N N +L
Sbjct: 36 RAPITFITGENGSGKSTLLEAIAAGM-------------GF-NAAGGGKNFKGELDASHS 81
Query: 114 SMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINML--- 170
++ +A L R +G FL E VA +L+ A+ L
Sbjct: 82 AL--VDYAKLHKRK---KPPIGF-FLR---AESFYNVASYLD--EADGEANYGGRSLHHM 130
Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT---IVFVS 227
S G F F G I ++DEP ++L P ++ ELLA+ R L + I+ +
Sbjct: 131 SHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQL----ELLAILRDLADSGAQIIIAT 185
Query: 228 H 228
H
Sbjct: 186 H 186
>gnl|CDD|73131 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 121
Score = 33.6 bits (77), Expect = 0.086
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 239 RIAIMEGGRIIQCGTPQEII--LHPANCYVSEFIQKLNPITALVAADVMRVCSIDDESNI 296
R+ ++EGG+++ T ++I L V + Q+ I L +D+M +
Sbjct: 26 RLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQE-RRIRNLPVSDIM--------TRP 76
Query: 297 VHKISRQMPLIDIID-MVADNLGKIGVVEDDRIVGIITAIDIVR 339
V I + D+ M+ +N+G + VV+D ++VGI+T DI+R
Sbjct: 77 VITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR 120
Score = 32.1 bits (73), Expect = 0.22
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVRGL 341
M+ ++ ++ V+E ++VGI+T DI L
Sbjct: 19 MLDHDISRLPVIEGGKLVGIVTEKDIADAL 48
>gnl|CDD|73086 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of
the cystathionine beta-synthase (CBS pair) domains
associated with the BON (bacterial OsmY and nodulation
domain) domain. BON is a putative phospholipid-binding
domain found in a family of osmotic shock protection
proteins. It is also found in some secretins and a group
of potential haemolysins. Its likely function is
attachment to phospholipid membranes. CBS is a small
domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is
unknown..
Length = 135
Score = 33.2 bits (76), Expect = 0.10
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 300 ISRQMPLIDIID-MVADNLGKIGVVEDDRIVGIITAIDIVR 339
+ PL ++ + M + ++ VV R+VGI++ D++R
Sbjct: 94 VGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR 134
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 33.2 bits (76), Expect = 0.11
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 138 FLDIPDVERKSRVAEH--LEIVNLTKWADCKINMLSGGMKQRVGFARAF---ATGAPILL 192
F +IP + RK + L + L + A LSGG QR+ A+ +TG + +
Sbjct: 140 FENIPKIARKLQTLCDVGLGYIKLGQPA----TTLSGGEAQRIKLAKELSKRSTGKTLYI 195
Query: 193 MDEPFSSLDPLIRMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIM------E 244
+DEP + L +L L LQR + K T+V + H++ + + + I +
Sbjct: 196 LDEPTTGLHFHDVKKL---LEVLQRLVDKGNTVVVIEHNL-DVIKCADWIIDLGPEGGDG 251
Query: 245 GGRIIQCGTP 254
GG+++ GTP
Sbjct: 252 GGQVVASGTP 261
>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 32.8 bits (75), Expect = 0.16
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSI 75
+ KG ++VL G SG GKSTL++++
Sbjct: 1 MSKGLLIVLSGPSGVGKSTLVKAL 24
>gnl|CDD|73134 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 132
Score = 32.6 bits (74), Expect = 0.16
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 240 IAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALVAADVMRVCSIDDESNIVHK 299
+ I+ G +I+ + + + S + I L+ V + + V
Sbjct: 37 VGIVSEGDLIRKIYKGKGLFY-VTLLYSVIFLDESKIKKLLGKKVEEIMTKK-----VIT 90
Query: 300 ISRQMPLIDIID-MVADNLGKIGVVEDDRIVGIITAIDIVR 339
+ + D+ M N+ ++ VV+D ++VGII+ DI+R
Sbjct: 91 VDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR 131
>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arl9/Arfrp2-like subfamily. Arl9
(Arf-like 9) was first identified as part of the Human
Cancer Genome Project. It maps to chromosome 4q12 and
is sometimes referred to as Arfrp2 (Arf-related protein
2). This is a novel subfamily identified in human
cancers that is uncharacterized to date.
Length = 164
Score = 32.4 bits (74), Expect = 0.20
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 56 EILVLMGLSGAGKSTLLRSING 77
+ILVL GL GAGK++LL S++
Sbjct: 1 QILVL-GLDGAGKTSLLHSLSS 21
>gnl|CDD|73136 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 106
Score = 32.1 bits (73), Expect = 0.23
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVRG 340
MV +N+ ++ VV+D ++VGI+T DIVR
Sbjct: 78 MVENNIRRVPVVDDGKLVGIVTVADIVRA 106
>gnl|CDD|73142 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domains associated with either the CAP_ED (cAMP
receptor protein effector domain) family of
transcription factors and the DUF294 domain or the PB1
(Phox and Bem1p) domain. Members of CAP_ED, include CAP
which binds cAMP, FNR (fumarate and nitrate reductase)
which uses an iron-sulfur cluster to sense oxygen, and
CooA a heme containing CO sensor. In all cases binding
of the effector leads to conformational changes and the
ability to activate transcription. DUF294 is a putative
nucleotidyltransferase with a conserved DxD motif. The
PB1 domain adopts a beta-grasp fold, similar to that
found in ubiquitin and Ras-binding domains. A motif,
variously termed OPR, PC and AID, represents the most
conserved region of the majority of PB1 domains, and is
necessary for PB1 domain function. This function is the
formation of PB1 domain heterodimers, although not all
PB1 domain pairs associate. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 111
Score = 32.0 bits (73), Expect = 0.27
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVR 339
M+ + + VV+D R+VG+I+A D++R
Sbjct: 83 MLERGIHHLPVVDDGRLVGVISATDLLR 110
>gnl|CDD|73144 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 112
Score = 31.4 bits (71), Expect = 0.36
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVRG 340
M + ++ VV+DD +VGI+T DIV G
Sbjct: 84 MAKHGIKRLPVVDDDELVGIVTTTDIVMG 112
Score = 30.6 bits (69), Expect = 0.67
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVRG 340
M +N+G++ VV++++ VGIIT D+V+
Sbjct: 19 MTENNIGRLIVVDNEKPVGIITERDLVKK 47
>gnl|CDD|32729 COG2905, COG2905, Predicted signal-transduction protein containing
cAMP-binding and CBS domains [Signal transduction
mechanisms].
Length = 610
Score = 31.0 bits (70), Expect = 0.54
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 270 IQKLNPITALVAADVMRVCSIDDESNIVHKISRQM--PLIDI----------IDMVADNL 317
+ P+ +V +R I D + K+S M P+I + + M+ + +
Sbjct: 186 LDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRI 245
Query: 318 GKIGVVEDDRIVGIITAIDIVRGLS 342
+ V ED + +GI+T DI+R S
Sbjct: 246 KHLPVTEDGQPLGILTLTDILRLFS 270
>gnl|CDD|144238 pfam00571, CBS, CBS domain. CBS domains are small intracellular
modules that pair together to form a stable globular
domain. This family represents a single CBS domain.
Pairs of these domains have been termed a Bateman
domain. CBS domains have been shown to bind ligands with
an adenosyl group such as AMP, ATP and S-AdoMet. CBS
domains are found attached to a wide range of other
protein domains suggesting that CBS domains may play a
regulatory role making proteins sensitive to adenosyl
carrying ligands. The region containing the CBS domains
in Cystathionine-beta synthase is involved in regulation
by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP.
The CBS domains from IMPDH and the chloride channel CLC2
bind ATP.
Length = 57
Score = 30.6 bits (70), Expect = 0.59
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 297 VHKISRQMPLIDIID-MVADNLGKIGVV-EDDRIVGIITAIDIVRGLS 342
V + L + ++ M + + ++ VV ED ++VGI+T D++R L
Sbjct: 9 VVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALL 56
>gnl|CDD|73084 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of
the cystathionine beta-synthase (CBS pair) domains in
the acetoin utilization proteins in bacteria. Acetoin is
a product of fermentative metabolism in many prokaryotic
and eukaryotic microorganisms. They produce acetoin as
an external carbon storage compound and then later reuse
it as a carbon and energy source during their stationary
phase and sporulation. In addition these CBS domains are
associated with a downstream ACT domain, which is linked
to a wide range of metabolic enzymes that are regulated
by amino acid concentration. Pairs of ACT domains bind
specifically to a particular amino acid leading to
regulation of the linked enzyme. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 121
Score = 30.5 bits (69), Expect = 0.60
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVR 339
M +G + VVED R+VGIIT D++R
Sbjct: 93 MREHRIGCLPVVEDGRLVGIITETDLLR 120
>gnl|CDD|73121 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 113
Score = 30.5 bits (69), Expect = 0.65
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIV 338
M ++G + V E+DR+VGI+T DIV
Sbjct: 19 MREHDVGALPVCENDRLVGIVTDRDIV 45
>gnl|CDD|73111 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with a PAS domain, a GGDEF
(DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain
downstream. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in signal
transduction. The GGDEF domain has been suggested to be
homologous to the adenylyl cyclase catalytic domain and
is thought to be involved in regulating cell surface
adhesiveness in bacteria. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 111
Score = 30.5 bits (69), Expect = 0.66
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 300 ISRQMPLIDIID-MVADNLGKIGVVEDDRIVGIITAIDIVR 339
L + M + I VV+D R +GI+T DI+R
Sbjct: 6 CPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILR 46
>gnl|CDD|73122 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 113
Score = 30.5 bits (69), Expect = 0.73
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 297 VHKISRQMPLIDIIDMVAD-NLGKIGVVED-DRIVGIITAIDIVRGL 341
V + + + ++A+ N+G + VV+D R+VGI + DIVR +
Sbjct: 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKV 49
>gnl|CDD|73112 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with either the SpoIVFB domain
(sporulation protein, stage IV cell wall formation, F
locus, promoter-distal B) or the chloride channel
protein EriC. SpoIVFB is one of 4 proteins involved in
endospore formation; the others are SpoIVFA (sporulation
protein, stage IV cell wall formation, F locus,
promoter-proximal A), BofA (bypass-of-forespore A ), and
SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the
space between the two where it activates SpoIVFB. EriC
is involved in inorganic ion transport and metabolism.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown..
Length = 111
Score = 30.2 bits (68), Expect = 0.78
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 305 PLIDIID-MVADNLGKIGVVEDD-RIVGIITAIDIVR 339
L D + M ++G++ VV+D R+VGI++ D++R
Sbjct: 74 TLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110
>gnl|CDD|34310 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 30.4 bits (68), Expect = 0.83
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 168 NMLSGGMKQRVGF----ARAFATG----APILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
N LS G K + F A+ ++++D+P SS D I R+ L+ ++
Sbjct: 528 NTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVS-VLVKEEKTN 586
Query: 220 KKTIVFVSHD 229
K ++ ++H+
Sbjct: 587 IKQVIVLTHN 596
>gnl|CDD|30863 COG0517, COG0517, FOG: CBS domain [General function prediction
only].
Length = 117
Score = 30.1 bits (67), Expect = 0.84
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 297 VHKISRQMPLIDIIDMVADN-LGKIGVVEDDRIVGIITAIDIVRGLS 342
V + + D + ++++N + + VV+D ++VGIIT DI+R L+
Sbjct: 9 VITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALA 55
>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds including sugars, ions, peptides,
and more complex organic molecules. The nucleotide
binding domain shows the highest similarity between all
members of the family. ABC transporters are a subset
of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition
to, the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 276
Score = 30.2 bits (68), Expect = 0.86
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 44 AVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGL 78
A+I+ L+ ++G + VL G +GAGKS LL +++ L
Sbjct: 10 ALIEELELDFEEG-LTVLTGETGAGKSILLDALSLL 44
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 30.1 bits (68), Expect = 0.87
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 57 ILVLMGLSGAGKSTLLRSI 75
++VL G SG GKSTLL+ +
Sbjct: 1 LIVLSGPSGVGKSTLLKRL 19
>gnl|CDD|34256 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 30.0 bits (67), Expect = 1.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV 86
+L+++ + V++G +GAGKS ++ LA VRG +
Sbjct: 15 RSLDLEIRRVNVIIGANGAGKSNFYDALRLLADAVRGNL 53
>gnl|CDD|73042 cd03283, ABC_MutS-like, MutS-like homolog in eukaryotes. The
MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family
possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 199
Score = 29.8 bits (67), Expect = 1.0
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSI 75
+++++K +++ G + +GKST LR+I
Sbjct: 19 DIDMEKKNGILITGSNMSGKSTFLRTI 45
>gnl|CDD|32858 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 30.0 bits (67), Expect = 1.1
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDI 230
SG A GA LL+DE S+ + L+R ++LA + + ++T+ + +I
Sbjct: 322 SGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVR-----DVLAKESEGERTLTPLVDEI 376
Query: 231 NEAFRLGNRIAIMEGG 246
+ GG
Sbjct: 377 GSLRGDLISTIAVTGG 392
>gnl|CDD|30108 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 767
Score = 29.6 bits (66), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKST----LLRSINGLAPVVRGEVLVD 89
Y + +A LE ++ + ++ +G SGAGK+T L + A V G V V+
Sbjct: 70 YSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVE 124
>gnl|CDD|29833 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates
the utilization of carbon sources by gram-positive
bacteria. It catalyzes both the ATP-dependent
phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter reaction
uses inorganic phosphate as substrate and produces
pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK)
and the C-terminal catalytic domain of HprK/P are
structurally similar with conserved active site residues
suggesting these two phosphotransferases have related
functions. The HprK/P N-terminal domain is structurally
similar to the N-terminal domains of the MurE and MurF
amino acid ligases..
Length = 149
Score = 29.8 bits (67), Expect = 1.3
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 17/113 (15%)
Query: 58 LVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-----DTDKGFVNPYAADANVLRKLR--- 109
+++ G SG GKS L L + RG LV + L+ L
Sbjct: 17 VLITGPSGIGKSEL-----ALELIKRGHRLVADDRVVVKREGGRLVGRAPEALKGLIEIR 71
Query: 110 ---MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
+ V ++ A+ + + +EL E+ + + +R E+ I+ +
Sbjct: 72 GLGIIDVPRLYGIEAVRDRKVIDLVIEL-EEWEEEKNFDRLGLEEEYKRILGV 123
>gnl|CDD|73104 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains associated with KpsF/GutQ domains in the API
[A5P (D-arabinose 5-phosphate) isomerase] protein.
These APIs catalyze the conversion of the pentose
pathway intermediate D-ribulose 5-phosphate into A5P, a
precursor of 3-deoxy-D-manno-octulosonate, which is an
integral carbohydrate component of various glycolipids
coating the surface of the outer membrane of
Gram-negative bacteria, including lipopolysaccharide and
many group 2 K-antigen capsules. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The
interface between the two CBS domains forms a cleft that
is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is
unknown..
Length = 114
Score = 29.3 bits (66), Expect = 1.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 297 VHKISRQMPLID-IIDMVADNLGKIGVV-EDDRIVGIITAIDIVRGLS 342
+ +S L D +++M LG VV ED R+VGI T D+ R L
Sbjct: 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALE 51
>gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction
mechanisms].
Length = 889
Score = 29.5 bits (66), Expect = 1.5
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 16 GETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSI 75
GE+ + K I+ V M+ + L I+ + G+ G GK+TL R I
Sbjct: 141 GESLDPREKVETRPIQSESDVGLETMLEKLWN-RLMEDDVGIVGIYGMGGVGKTTLARQI 199
Query: 76 N 76
Sbjct: 200 F 200
>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 29.4 bits (66), Expect = 1.7
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 21 KIRKRSRYSIKK-HDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSI 75
KI + Y ++K +++ EY V + K KG IL L+G G GK++L +SI
Sbjct: 319 KILDKDHYGLEKVKERILEYLAVQKLTKK----LKGPILCLVGPPGVGKTSLGKSI 370
>gnl|CDD|30843 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 29.4 bits (66), Expect = 1.7
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 44 AVI-KANLEVKKGEILVLMGLSGAGKSTLLRSINGL 78
A+I + LE +KG + VL G +GAGKS ++ ++ L
Sbjct: 11 AIIEELELEFEKG-LTVLTGETGAGKSIIIDALGLL 45
>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 29.1 bits (65), Expect = 1.8
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSI 75
+K G++++L G GAGK+TL+R I
Sbjct: 22 LKAGDVVLLSGDLGAGKTTLVRGI 45
>gnl|CDD|29834 cd01919, PEPCK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP or GTP) for
the phosphoryl transfer, and has a strict requirement
for divalent metal ions for activity. PEPCK's separate
into two phylogenetic groups based on their nucleotide
substrate specificity (the ATP-, and GTP-dependent
groups)..
Length = 515
Score = 29.2 bits (65), Expect = 1.9
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 23/147 (15%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHT 112
G++LV GLSG GK+TL S++ ++ + D G NP L + T
Sbjct: 215 TNGDVLVFFGLSGTGKTTL--SMDPKRELIGDDEHWWKDDGVFNPEGGCYAKAIGLSVKT 272
Query: 113 VSMVFQQFALLPWRTVARNVEL----GLEFLDIPDVERKSRV---AEHLEIVNLTKWADC 165
+++ + + NV G++F DI +RV A H+ I+ W
Sbjct: 273 EPNIYKA---IRKNAIFENVAETSDGGIDFEDI-SAHPNTRVCYPASHIPII-DAAWE-- 325
Query: 166 KINMLSGGMKQRVGF--ARAFATGAPI 190
S G + V F AF P+
Sbjct: 326 -----SAGHIEGVIFLTRDAFGVVPPV 347
>gnl|CDD|73100 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of
the cystathionine beta-synthase (CBS pair) domains
associated with the HPP motif domain. These proteins are
integral membrane proteins with four transmembrane
spanning helices. The function of these proteins is
uncertain, but they are thought to be transporters. CBS
is a small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is
unknown..
Length = 124
Score = 29.0 bits (65), Expect = 2.0
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 277 TALVAADVMRVCSIDDESNIVHKISRQMPLIDIIDMVADN-LGKIGVVEDD-RIVGIITA 334
D+M S V + P+ +++ ++AD + VV++D R+VGI+T
Sbjct: 67 KPETVGDIM--------SPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQ 118
Query: 335 IDIVRG 340
D++
Sbjct: 119 TDLIAA 124
>gnl|CDD|133255 cd00879, Sar1, Sar1 subfamily. Sar1 is an essential component of
COPII vesicle coats involved in export of cargo from
the ER. The GTPase activity of Sar1 functions as a
molecular switch to control protein-protein and
protein-lipid interactions that direct vesicle budding
from the ER. Activation of the GDP to the GTP-bound
form of Sar1 involves the membrane-associated guanine
nucleotide exchange factor (GEF) Sec12. Sar1 is unlike
all Ras superfamily GTPases that use either myristoyl
or prenyl groups to direct membrane association and
function, in that Sar1 lacks such modification.
Instead, Sar1 contains a unique nine-amino-acid
N-terminal extension. This extension contains an
evolutionarily conserved cluster of bulky hydrophobic
amino acids, referred to as the Sar1-N-terminal
activation recruitment (STAR) motif. The STAR motif
mediates the recruitment of Sar1 to ER membranes and
facilitates its interaction with mammalian Sec12 GEF
leading to activation.
Length = 190
Score = 29.1 bits (66), Expect = 2.0
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 53 KKGEILVLMGLSGAGKSTLLR 73
K+ +IL L GL AGK+TLL
Sbjct: 18 KEAKILFL-GLDNAGKTTLLH 37
>gnl|CDD|133354 cd04154, Arl2, Arl2 subfamily. Arl2 (Arf-like 2) GTPases are
members of the Arf family that bind GDP and GTP with
very low affinity. Unlike most Arf family proteins,
Arl2 is not myristoylated at its N-terminal helix. The
protein PDE-delta, first identified in photoreceptor
rod cells, binds specifically to Arl2 and is
structurally very similar to RhoGDI. Despite the high
structural similarity between Arl2 and Rho proteins and
between PDE-delta and RhoGDI, the interactions between
the GTPases and their effectors are very different. In
its GTP bound form, Arl2 interacts with the protein
Binder of Arl2 (BART), and the complex is believed to
play a role in mitochondrial adenine nucleotide
transport. In its GDP bound form, Arl2 interacts with
tubulin- folding Cofactor D; this interaction is
believed to play a role in regulation of microtubule
dynamics that impact the cytoskeleton, cell division,
and cytokinesis.
Length = 173
Score = 29.1 bits (66), Expect = 2.0
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 53 KKGEILVLM-GLSGAGKSTLLRSING 77
K+ E+ +L+ GL AGK+T+L+ + G
Sbjct: 11 KEREMRILILGLDNAGKTTILKKLLG 36
>gnl|CDD|34258 COG4639, COG4639, Predicted kinase [General function prediction
only].
Length = 168
Score = 29.2 bits (65), Expect = 2.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 57 ILVLMGLSGAGKSTLLRSINGLAPVVR 83
++VL G SG+GKST + V+
Sbjct: 4 LVVLRGASGSGKSTFAKENFLQNYVLS 30
>gnl|CDD|36702 KOG1489, KOG1489, KOG1489, Predicted GTP-binding protein (ODN
superfamily) [General function prediction only].
Length = 366
Score = 28.8 bits (64), Expect = 2.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 18 TSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSING 77
SN+ R K S+ G+ LE+K + L+G AGKSTLL +++
Sbjct: 168 LSNENRSP---------KFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSR 218
Query: 78 LAPVV 82
P V
Sbjct: 219 AKPKV 223
>gnl|CDD|73081 cd02205, CBS_pair, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 113
Score = 29.0 bits (64), Expect = 2.1
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 297 VHKISRQMPLIDIID-MVADNLGKIGVVEDD-RIVGIITAIDIVR 339
V +S L + + M+ + ++ VV+D+ R+VGI+T DI+R
Sbjct: 68 VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112
Score = 26.6 bits (58), Expect = 9.3
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 297 VHKISRQMPLIDIID-MVADNLGKIGVVEDD-RIVGIITAIDIVRGLS 342
V +S + + + M+ + + VV+DD R+VGI+T D++R L+
Sbjct: 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALA 50
>gnl|CDD|133298 cd01898, Obg, Obg subfamily. The Obg nucleotide binding protein
subfamily has been implicated in stress response,
chromosome partitioning, replication initiation,
mycelium development, and sporulation. Obg proteins
are among a large group of GTP binding proteins
conserved from bacteria to humans. The E. coli
homolog, ObgE is believed to function in ribosomal
biogenesis. Members of the subfamily contain two
equally and highly conserved domains, a C-terminal GTP
binding domain and an N-terminal glycine-rich domain.
Length = 170
Score = 28.9 bits (66), Expect = 2.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 60 LMGLSGAGKSTLLRSI 75
L+GL AGKSTLL +I
Sbjct: 5 LVGLPNAGKSTLLSAI 20
>gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 243
Score = 28.6 bits (64), Expect = 2.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 166 KINMLSGGMKQRVGFARAFATG----APILLMDEPFSSLDPLIR 205
++ LSGG K V A FA AP L DE ++LD R
Sbjct: 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYR 198
>gnl|CDD|29830 cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP) for the
phosphoryl transfer, and has a strict requirement for
divalent metal ions for activity. PEPCK's separate into
two phylogenetic groups based on their nucleotide
substrate specificity, this model describes the
ATP-dependent groups..
Length = 508
Score = 28.6 bits (64), Expect = 2.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 53 KKGEILVLMGLSGAGKSTL 71
KKG++ + GLSG GK+TL
Sbjct: 207 KKGDVALFFGLSGTGKTTL 225
>gnl|CDD|147030 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region. GTR1
was first identified in S. cerevisiae as a suppressor
of a mutation in RCC1. Biochemical analysis revealed
that Gtr1 is in fact a G protein of the Ras family. The
RagA/B proteins are the human homologues of Gtr1.
Included in this family is the human Rag C, a novel
protein that has been shown to interact with RagA/B.
Length = 230
Score = 28.7 bits (65), Expect = 2.5
Identities = 11/18 (61%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
Query: 58 LVLMGLSGAGKSTLLRSI 75
++LMGL G+GKS+ +RSI
Sbjct: 2 VLLMGLRGSGKSS-MRSI 18
>gnl|CDD|31846 COG1660, COG1660, Predicted P-loop-containing kinase [General
function prediction only].
Length = 286
Score = 28.6 bits (64), Expect = 2.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 56 EILVLMGLSGAGKSTLLRSI 75
++++ GLSGAGKS LR +
Sbjct: 2 RLVIVTGLSGAGKSVALRVL 21
>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 28.7 bits (64), Expect = 2.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTL 71
V+ + L+ +KG ++ GLSG+GKST+
Sbjct: 10 VTKQEREALKGQKGAVIWFTGLSGSGKSTI 39
>gnl|CDD|73105 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains
associated with the MET2 domain. Met2 is a key enzyme in
the biosynthesis of methionine. It encodes a homoserine
transacetylase involved in converting homoserine to
O-acetyl homoserine. CBS is a small domain originally
identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 110
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 312 MVADNLGKIGVVEDD-RIVGIITAIDIVRGLSCCRR 346
M+ +N+ + VV++D R+VGI+T+ DI + ++ ++
Sbjct: 20 MIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKK 55
>gnl|CDD|30084 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle..
Length = 679
Score = 28.7 bits (64), Expect = 2.6
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 8 FRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAG 67
++D+ ET K R +SR + H + + + L ++ + +++ G SGAG
Sbjct: 43 YKDLPNYGPETIRKYRGKSRSELPPHV----FAIADRAYRNMLRDRRNQSIIISGESGAG 98
Query: 68 KST 70
K+
Sbjct: 99 KTE 101
>gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079.
This uncharacterized family contains a P-loop.
Length = 123
Score = 28.4 bits (64), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV 86
K G++++L G GAGK+T +R + + G V
Sbjct: 13 KAGDVVLLSGDLGAGKTTFVRGL-AKGLGITGNV 45
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 28.7 bits (64), Expect = 2.8
Identities = 10/15 (66%), Positives = 15/15 (100%)
Query: 57 ILVLMGLSGAGKSTL 71
I+V+MG+SG+GKST+
Sbjct: 1 IIVVMGVSGSGKSTV 15
>gnl|CDD|39108 KOG3905, KOG3905, KOG3905, Dynein light intermediate chain [Cell
motility].
Length = 473
Score = 28.5 bits (63), Expect = 2.8
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87
+ ++ G+ ++++G +G+GK++L+ + G V +G L
Sbjct: 44 RTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGL 84
>gnl|CDD|73129 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 125
Score = 28.6 bits (64), Expect = 2.8
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 297 VHKISRQMPLIDIID-MVADNLGKIGVVEDD--RIVGIITAIDIVRGLSCCRRFS 348
V + P+++ MV + ++ VV++ ++VGIITA DI++ L +F+
Sbjct: 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFN 57
Score = 28.2 bits (63), Expect = 3.0
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 297 VHKISRQMPLIDIID-MVADNLGKIGVVEDD-RIVGIITAIDIVR 339
V I+ + D + M+ +G + VV+DD ++VGI+T D+++
Sbjct: 80 VITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124
>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 28.4 bits (63), Expect = 3.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 51 EVKKGEILVLMGLSGAGKSTLL 72
G ++ ++G SGAGK TLL
Sbjct: 1 RTFMGRLIAVVGPSGAGKDTLL 22
>gnl|CDD|32629 COG2766, PrkA, Putative Ser protein kinase [Signal transduction
mechanisms].
Length = 649
Score = 28.3 bits (63), Expect = 3.1
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 12 DIVFGETSNKIRKRSRYSIKKHDKVSE----YGMVSAVIK---------ANLEVKKGEIL 58
D +T + R +S + D+ +GM ++ + LE +K +IL
Sbjct: 48 DPEMVDTEHDGRLSRIFSNRVIDRYPAFNDFFGMEESIEQIVGYFKHAAQGLEERK-QIL 106
Query: 59 VLMGLSGAGKSTLLRSINGLA 79
L+G G GKS+L + L
Sbjct: 107 YLLGPVGGGKSSLAERLKRLM 127
>gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 28.4 bits (62), Expect = 3.1
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 58 LVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHT 112
+V++G G GK+TLL + V E N A + +
Sbjct: 8 IVVLGDGGVGKTTLLNRL------VGDEFPEGYPPTIGNLDPAKTIEPYRRNIKL 56
>gnl|CDD|31388 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 28.3 bits (63), Expect = 3.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 188 APILLMDEPFSSLDPLIRMRLQD 210
PILL+D+ S LD R L D
Sbjct: 303 YPILLLDDVASELDDGRRAALLD 325
>gnl|CDD|133356 cd04156, ARLTS1, ARLTS1 subfamily. ARLTS1 (Arf-like tumor
suppressor gene 1), also known as Arl11, is a member of
the Arf family of small GTPases that is believed to
play a major role in apoptotic signaling. ARLTS1 is
widely expressed and functions as a tumor suppressor
gene in several human cancers. ARLTS1 is a
low-penetrance suppressor that accounts for a small
percentage of familial melanoma or familial chronic
lymphocytic leukemia (CLL). ARLTS1 inactivation seems
to occur most frequently through biallelic
down-regulation by hypermethylation of the promoter.
In breast cancer, ARLTS1 alterations were typically a
combination of a hypomorphic polymorphism plus loss of
heterozygosity. In a case of thyroid adenoma, ARLTS1
alterations were polymorphism plus promoter
hypermethylation. The nonsense polymorphism Trp149Stop
occurs with significantly greater frequency in familial
cancer cases than in sporadic cancer cases, and the
Cys148Arg polymorphism is associated with an increase
in high-risk familial breast cancer.
Length = 160
Score = 28.2 bits (63), Expect = 3.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 58 LVLMGLSGAGKSTLLRSINGLAPV 81
++L+GL AGKSTLL + V
Sbjct: 2 VLLLGLDSAGKSTLLYKLKHAELV 25
>gnl|CDD|143815 pfam00025, Arf, ADP-ribosylation factor family. Pfam combines a
number of different Prosite families together.
Length = 174
Score = 28.4 bits (64), Expect = 3.5
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 53 KKGEILVLMGLSGAGKSTLL 72
K+ IL+L GL AGK+T+L
Sbjct: 13 KEMRILIL-GLDNAGKTTIL 31
>gnl|CDD|73099 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains in
association with the GGDEF (DiGuanylate-Cyclase (DGC))
domain. The GGDEF domain has been suggested to be
homologous to the adenylyl cyclase catalytic domain and
is thought to be involved in regulating cell surface
adhesiveness in bacteria. CBS is a small domain
originally identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown..
Length = 105
Score = 28.3 bits (63), Expect = 3.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVR 339
M +G + VVED ++VGIIT+ D+ R
Sbjct: 19 MEKHRIGGLPVVEDGKLVGIITSRDVRR 46
Score = 26.8 bits (59), Expect = 9.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVR 339
M + ++ V+ + ++VGIIT I
Sbjct: 77 MEEKKIERLPVLRERKLVGIITKGTIAL 104
>gnl|CDD|73128 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 114
Score = 28.2 bits (63), Expect = 3.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 312 MVADNLGKIGVVEDDRIVGIITAIDIVR 339
M N+ + VVE++ ++GII+ DI
Sbjct: 86 MERTNIRRAPVVENNELIGIISLTDIFL 113
>gnl|CDD|36182 KOG0964, KOG0964, KOG0964, Structural maintenance of chromosome
protein 3 (sister chromatid cohesion complex Cohesin,
subunit SMC3) [Cell cycle control, cell division,
chromosome partitioning].
Length = 1200
Score = 28.0 bits (62), Expect = 3.7
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 167 INMLSGGMKQRVGFARAFA----TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
+ LSGG K V A FA AP L DE ++LD R + D L ++L +
Sbjct: 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVAD----LIKELSDS 1150
Query: 223 IVFV 226
F+
Sbjct: 1151 AQFI 1154
>gnl|CDD|73045 cd03286, ABC_MSH6_euk, MutS6 homolog in eukaryotes. The MutS
protein initiates DNA mismatch repair by recognizing
mispaired and unpaired bases embedded in duplex DNA and
activating endo- and exonucleases to remove the
mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2),
whereas seven MSH proteins (MSH1 to MSH7) have been
identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 218
Score = 28.0 bits (62), Expect = 4.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSI 75
+L ILVL G + GKSTLLR++
Sbjct: 24 DLGATSPRILVLTGPNMGGKSTLLRTV 50
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 27.7 bits (61), Expect = 4.7
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 55 GEILVLMGLSGAGKSTLLRSI-NGLAPVVRG 84
E +++G +G+GK+T+L +I N L +
Sbjct: 24 SETTIIVGPNGSGKTTVLDAIRNALNKFIDF 54
>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyses the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 27.6 bits (62), Expect = 5.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 54 KGEILVLMGLSGAGKSTL 71
+G + GLSG+GKST+
Sbjct: 1 RGCTVWFTGLSGSGKSTI 18
>gnl|CDD|35296 KOG0073, KOG0073, KOG0073, GTP-binding ADP-ribosylation
factor-like protein ARL2 [Intracellular trafficking,
secretion, and vesicular transport, Cytoskeleton].
Length = 185
Score = 27.5 bits (61), Expect = 5.4
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP 80
G++S + K L+ ++ IL+L GL +GK+T+++ + G
Sbjct: 2 GLLSILRKQKLKEREVRILIL-GLDNSGKTTIVKKLLGEDT 41
>gnl|CDD|32051 COG1866, PckA, Phosphoenolpyruvate carboxykinase (ATP) [Energy
production and conversion].
Length = 529
Score = 27.6 bits (61), Expect = 5.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 53 KKGEILVLMGLSGAGKSTL 71
+KG++ + GLSG GK+TL
Sbjct: 225 EKGDVALFFGLSGTGKTTL 243
>gnl|CDD|73109 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains
associated with the pyridoxal-phosphate (PALP) dependent
enzyme domain upstream. The vitamin B6 complex
comprises pyridoxine, pyridoxal, and pyridoxamine, as
well as the 5'-phosphate esters of pyridoxal (PALP) and
pyridoxamine, the last two being the biologically active
coenzyme derivatives. The members of the PALP family
are principally involved in the biosynthesis of amino
acids and amino acid-derived metabolites, but they are
also found in the biosynthetic pathways of amino sugars
and other amine-containing compounds. CBS is a small
domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is
unknown..
Length = 110
Score = 27.4 bits (61), Expect = 5.6
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 300 ISRQMPLIDIIDMVADNLGKIGVVEDDRIVGIITAIDIVR 339
+ P+ ++ +++ + V E + VGIIT D+++
Sbjct: 70 VDPDAPIEELSELLDRGNVAVVVDEGGKFVGIITRADLLK 109
>gnl|CDD|34627 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 27.3 bits (60), Expect = 5.9
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 8 FRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAG 67
+RD+ I + ++R ++ H + + + L K+ + +++ G SGAG
Sbjct: 109 YRDLGIYTDDIIQSYSGKNRLELEPH----VFAIAEEAYRNLLSEKENQTIIISGESGAG 164
Query: 68 KS 69
K+
Sbjct: 165 KT 166
>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands..
Length = 271
Score = 27.6 bits (61), Expect = 6.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSI 75
+KGE+++L +G GK+T LR
Sbjct: 28 RKGELIILTAGTGVGKTTFLREY 50
>gnl|CDD|33698 COG3911, COG3911, Predicted ATPase [General function prediction
only].
Length = 183
Score = 27.3 bits (60), Expect = 6.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 51 EVKKGEILVLMGLSGAGKSTLLRSI 75
+ + +L G GAGK+TLL ++
Sbjct: 5 PFNRHKRFILTGGPGAGKTTLLAAL 29
>gnl|CDD|133278 cd01876, YihA_EngB, The YihA (EngB) subfamily. This subfamily of
GTPases is typified by the E. coli YihA, an essential
protein involved in cell division control. YihA and
its orthologs are small proteins that typically contain
less than 200 amino acid residues and consists of the
GTPase domain only (some of the eukaryotic homologs
contain an N-terminal extension of about 120 residues
that might be involved in organellar targeting).
Homologs of yihA are found in most Gram-positive and
Gram-negative pathogenic bacteria, with the exception
of Mycobacterium tuberculosis. The broad-spectrum
nature of YihA and its essentiality for cell viability
in bacteria make it an attractive antibacterial target.
Length = 170
Score = 27.5 bits (62), Expect = 6.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 EILVLMGLSGAGKSTLLRSI---NGLAPV 81
EI G S GKS+L+ ++ LA
Sbjct: 1 EI-AFAGRSNVGKSSLINALTNRKKLART 28
>gnl|CDD|32881 COG3067, NhaB, Na+/H+ antiporter [Inorganic ion transport and
metabolism].
Length = 516
Score = 27.2 bits (60), Expect = 6.1
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 227 SHDINEAFRLGNRIAIME-------GGRIIQCGTPQE-IILHPANCYVSEFIQKLNPITA 278
+ E FR R +M GG + G PQ II A + EF ++ P+T
Sbjct: 191 YKVVLEQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQAGWHFGEFFLRMAPVTV 250
Query: 279 LVAADVMRVC 288
V + C
Sbjct: 251 PVLICGLLTC 260
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 27.2 bits (60), Expect = 6.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLL 72
NL V++ ++ L+G +G GK+T L
Sbjct: 197 NLIVEQKRVIALVGPTGVGKTTTL 220
>gnl|CDD|111395 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether
UreG binds GTP or some other nucleotide. Both enzymes
are involved in nickel binding. HypB can store nickel
and is required for nickel dependent hydrogenase
expression. UreG is required for functional
incorporation of the urease nickel metallocenter. GTP
hydrolysis may required by these proteins for nickel
incorporation into other nickel proteins. This family
of domains also contains P47K, a Pseudomonas
chlororaphis protein needed for nitrile hydratase
expression, and the cobW gene product, which may be
involved in cobalamin biosynthesis in Pseudomonas
denitrificans.
Length = 174
Score = 27.2 bits (61), Expect = 6.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 57 ILVLMGLSGAGKSTLLRSI 75
+ VL G G+GK+TLL +
Sbjct: 2 VTVLTGFLGSGKTTLLEHL 20
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 27.4 bits (60), Expect = 6.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 57 ILVLMGLSGAGKSTLLRSI 75
I+ ++G G GKSTL+RS+
Sbjct: 71 IVAVVGPPGTGKSTLIRSL 89
>gnl|CDD|112483 pfam03668, ATP_bind_2, P-loop ATPase protein family. This family
contains an ATP-binding site and could be an ATPase
(personal obs:C Yeats).
Length = 284
Score = 27.5 bits (61), Expect = 6.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 56 EILVLMGLSGAGKSTLLRSINGL 78
+++++ G SGAGKS LR++ L
Sbjct: 2 DLVIITGRSGAGKSVALRALEDL 24
>gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA
mismatch repair by recognizing mispaired and unpaired
bases embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the
MutS family also possess a conserved ATPase activity
that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 202
Score = 27.1 bits (60), Expect = 6.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSI 75
+ ++ + G +L++ G + GKST LRSI
Sbjct: 18 TFVPNDINLGSGRLLLITGPNMGGKSTYLRSI 49
>gnl|CDD|30882 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 27.1 bits (60), Expect = 6.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 60 LMGLSGAGKSTLLRSINGLAPVVR-----------GEVLVDTDKGFV 95
L+GL AGKSTLL +++ P + G V VD + FV
Sbjct: 164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFV 210
>gnl|CDD|73001 cd03242, ABC_RecF, RecF is a recombinational DNA repair ATPase that
maintains replication in the presence of DNA damage.
When replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 270
Score = 27.1 bits (60), Expect = 7.0
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 187 GAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
P+LL+D+ + LD + L D + +
Sbjct: 210 EYPVLLLDDVLAELDLGRQAALLDAIEGRVQTF 242
>gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis..
Length = 273
Score = 27.1 bits (60), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 57 ILVLMGLSGAGKSTLLRSINGL 78
I+ + G SG GKST LR + L
Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSL 22
>gnl|CDD|73145 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase)..
Length = 122
Score = 27.1 bits (60), Expect = 7.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 312 MVADNLGKIGVVEDD-RIVGIITAIDIVR 339
MV + +G + VV+D +VGIIT D +R
Sbjct: 93 MVENKIGCLPVVDDKGTLVGIITRSDFLR 121
>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 26.9 bits (59), Expect = 8.3
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 11 VDIVFGETSNK------IRKRSRYSIKKHDKVSEYGMVSAVIKANLE--VKKGEILVLMG 62
+ IV G + IRK S + + EYG +S A L ++ + +++ G
Sbjct: 92 IQIVLGPEVSPNGSSFTIRKFSDE-PITPEDLIEYGTISPEQAAYLWLAIEARKSIIICG 150
Query: 63 LSGAGKSTLLRSI 75
+ +GK+TLL ++
Sbjct: 151 GTASGKTTLLNAL 163
>gnl|CDD|176169 cd08480, PBP2_CrgA_like_10, The C-terminal substrate binding domain
of an uncharacterized LysR-type transcriptional
regulator CrgA-like, contains the type 2 periplasmic
binding fold. This CD represents the substrate binding
domain of an uncharacterized LysR-type transcriptional
regulator (LTTR) CrgA-like 10. The LTTRs are acting as
both auto-repressors and activators of target promoters,
controlling operons involved in a wide variety of
cellular processes such as amino acid biosynthesis, CO2
fixation, antibiotic resistance, degradation of aromatic
compounds, nodule formation of nitrogen-fixing bacteria,
and synthesis of virulence factors, to name a few. In
contrast to the tetrameric form of other LTTRs, CrgA
from Neisseria meningitides assembles into an octameric
ring, which can bind up to four 63-bp DNA
oligonucleotides. Phylogenetic cluster analysis showed
that the CrgA-like regulators form a subclass of the
LTTRs that function as octamers. The CrgA is an
auto-repressor of its own gene and activates the
expression of the mdaB gene which coding for an
NADPH-quinone reductase and that its action is increased
by MBL (alpha-methylene-gamma-butyrolactone), an inducer
of NADPH-quinone oxidoreductase. The structural
topology of this substrate-binding domain is most
similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 198
Score = 26.9 bits (60), Expect = 8.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAG 67
+V+ + N+ V GE L + L+GAG
Sbjct: 117 RIVALPVSGNILVNDGEALRRLALAGAG 144
>gnl|CDD|114021 pfam05272, VirE, Virulence-associated protein E. This family
contains several bacterial virulence-associated protein
E like proteins.
Length = 198
Score = 27.0 bits (60), Expect = 8.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 36 VSEYGMVSAVIKA-NLEVKKGEILVLMGLSGAGKSTLLRSING 77
VS+ ++ AV + K +L+L G G+GKST L+ + G
Sbjct: 32 VSKLFLIGAVARVYEPGCKFDHVLILQGAQGSGKSTFLKKLGG 74
>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 122
Score = 26.9 bits (60), Expect = 8.4
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 57 ILVLMGLSGAGKSTLLRSI------NGLAPVVRGEVLVDTDKG 93
I++++G +GK+TL+R + G V+ D G
Sbjct: 2 IVLVVGPKDSGKTTLIRKLLNYLKRRGYRVA----VVKHLDHG 40
>gnl|CDD|32593 COG2524, COG2524, Predicted transcriptional regulator, contains
C-terminal CBS domains [Transcription].
Length = 294
Score = 26.8 bits (59), Expect = 9.0
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 270 IQKLNPITALVAADVMRVCSIDDESNIVHKISRQMPLI-----DIID----MVADNLGKI 320
+ + + +D+ + + + V R+ + DI D M +N+G++
Sbjct: 209 VDDDKIVGIITLSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRL 268
Query: 321 GVVED-DRIVGIITAIDIVRGLS 342
V + + VGIIT DI+ ++
Sbjct: 269 LVTDSNGKPVGIITRTDILTRIA 291
Score = 26.8 bits (59), Expect = 9.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 322 VVEDDRIVGIITAIDIVRGLSCC 344
VV+DD+IVGIIT DI + ++
Sbjct: 208 VVDDDKIVGIITLSDIAKAIANG 230
>gnl|CDD|144347 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.
Length = 420
Score = 26.7 bits (60), Expect = 9.3
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG 245
+E L +L+ I S +N A + G ++ + EG
Sbjct: 186 EEYLEYAERLRPYITDTSELLNRALKEGKKV-LFEG 220
>gnl|CDD|39822 KOG4622, KOG4622, KOG4622, Predicted nucleotide kinase [General
function prediction only].
Length = 291
Score = 26.7 bits (58), Expect = 9.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 57 ILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDT 90
+L L+G+ AGKS+ R I G +R +
Sbjct: 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHL 36
>gnl|CDD|30913 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 26.7 bits (59), Expect = 9.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 134 LGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLS 171
+G+E++ I D E K + E +E T A+ K +L
Sbjct: 145 IGVEYMHISDPEEKRWLQERIESGKPTFTAEEKKAILK 182
>gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 26.9 bits (59), Expect = 9.6
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 185 ATGAPILL-MDEPFSSLD-PLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAI 242
G P L+ +DE + LD P ++D L L RKL +VF + I + L +RIA
Sbjct: 631 LDGRPFLIFIDEFWKLLDNPKFADFIRDWLKTL-RKLNGVVVFATQSILDI--LKSRIA- 686
Query: 243 MEGGRIIQCGTPQEIILH 260
I P +I L
Sbjct: 687 ----DAIIEQCPTKIFLP 700
>gnl|CDD|133256 cd00880, Era_like, Era (E. coli Ras-like protein)-like. This
family includes several distinct subfamilies
(TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that
generally show sequence conservation in the region
between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. TrmE is
ubiquitous in bacteria and is a widespread
mitochondrial protein in eukaryotes, but is absent from
archaea. The yeast member of TrmE family, MSS1, is
involved in mitochondrial translation; bacterial
members are often present in translation-related
operons. FeoB represents an unusual adaptation of
GTPases for high-affinity iron (II) transport. YihA
(EngB) family of GTPases is typified by the E. coli
YihA, which is an essential protein involved in cell
division control. Era is characterized by a distinct
derivative of the KH domain (the pseudo-KH domain)
which is located C-terminal to the GTPase domain. EngA
and its orthologs are composed of two GTPase domains
and, since the sequences of the two domains are more
similar to each other than to other GTPases, it is
likely that an ancient gene duplication, rather than a
fusion of evolutionarily distinct GTPases, gave rise to
this family.
Length = 163
Score = 26.9 bits (60), Expect = 9.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 60 LMGLSGAGKSTLLRSI 75
L G + AGKS+LL ++
Sbjct: 1 LFGRTNAGKSSLLNAL 16
>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
(SMC) proteins are essential for successful chromosome
transmission during replication and segregation of the
genome in all organisms. SMCs are generally present as
single proteins in bacteria, and as at least six
distinct proteins in eukaryotes. The proteins range in
size from approximately 110 to 170 kDa, and each has
five distinct domains: amino- and carboxy-terminal
globular domains, which contain sequences characteristic
of ATPases, two coiled-coil regions separating the
terminal domains , and a central flexible hinge. SMC
proteins function together with other proteins in a
range of chromosomal transactions, including chromosome
condensation, sister-chromatid cohesion, recombination,
DNA repair, and epigenetic silencing of gene
expression..
Length = 178
Score = 26.8 bits (59), Expect = 9.7
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 169 MLSGGMKQRVGFARAFA----TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
+LSGG K A FA +P ++DE ++LDP R R+ D + + + + IV
Sbjct: 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIV 153
>gnl|CDD|30598 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 843
Score = 26.8 bits (59), Expect = 9.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSI 75
I+++ G + GKST LR +
Sbjct: 605 GNRRIILITGPNMGGKSTYLRQV 627
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.324 0.140 0.402
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,141,015
Number of extensions: 222587
Number of successful extensions: 1651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1415
Number of HSP's successfully gapped: 379
Length of query: 348
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 253
Effective length of database: 4,210,882
Effective search space: 1065353146
Effective search space used: 1065353146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)